>input_sequence_73318
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---------ATGGCGTGCATTGCAGCCCCAGTTC------------CCTTTGCTCCTTTCTGCAGGACACCATTTAC---
------------CTCGACCTCGTTGTCGGCCTCGTCCCCTTCGTTCCATCCGAGCCGCGTTCTGGTCAGGTGGGAACCTC
CTCCCCGGGAATGGTTGAAGCTGAATTTCGATGGATCTGTCTATCACGACGGGTCCGGCCGGGCGAGCATCGGCGGCTCC
ATCCGCGACTGCAACGGCCACGTCCTCGTCGCCTTCGCCGAGCCGACGGAGCACTCCACGGTGGGCATAGTGGAGGCGCG
AGCACTGATCCGCGGGCTGCGGCTCGCGATGAGTTTCTTCCGTGGCGGGCTTGTGGTGGAAGGCGACGACCAGGTGCTGG
TGGACCTC----CTGACCGGCAAGGAGATGCAGACCCGCATACCGCTGTCCATGCAACAGGAGATCAAGACTCTGCTTGC
GCACTTCTCGACGTACGAGCTGCAGCACATATACCGCGAGGGCAACCAGGTCGCCCACGTCCTGTGCAAAGAAGCATACC
AGCGACCGGGGGTGTGGAGGAGCGGGATCGTGCCGCACGCCGTGTGGGAGAAGGCGCTCGAAGACATGCATGGCGTGGCG
CACGAGCGGATCTGCAAGAAGAAGAA---CCAG--TGGTAG---------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------
>chr2A_1_TraesCS2A01G438600
ACCCTAGGCACCCTGAACGTCTATATAAGCCGTACGGTTTAGTCTGTAGAGGCACTATTGCAAGGTTTAGAGCTTAGAAC
TCCTTCATACGATCTTGCGGTAGATCATACTATACACTATACCCCATCACAATCAATATATCAGAAGCAGGATGTAGATT
TTTATCTCATCAAGAGGGTCCGTACCTGGGTTAATATTGTGTCCGTTTTGTCTCATGTTACATCTAGC-TCATATCACCA
AGCTTGGGACCCCCTACCCGAGATCTGTCGGGTTTAACACCGACACCTTGCTGGTGGGAGGGCTATGTTTTTGGATTTTT
TTTTTCGAGTTTTGTTAGGGTTTTTGTCCTGCTCAGGAAGGCGAGACAACGATGGCTCCTTGAAGATGGAATAAGGTTCT
CTCCGTCTAGCCTTCATTTCCATGGTGCGTC--GCATCATCGGTGGACATGTGCAGGTGTGTCTCCGGTGAATATGTCTT
TGGTTGATTTGCTCAGATCTGGTTGTCGTTTGT----------GTGTCTTCAGATTAGATCATTTTGATCTACGCTACTC
TTCATAAGTGGCGTTTGTTGTTCTGATGCGCTGGTCTTATGGGGCCTTAGCATGACGACTTTCTGATTGTCTACTACAAC
AAGTTCTGTTCGGCTCCCGCGACGATGATGGCGTCACGTCTTCATCTTGCTTCAGTGTTTATAGTCGTCGGTAGATAGTC
TATGGATTTGTGTAATTTTTTGGTGTTCGTTGTATTGTCTTGATTTAAGACGAGTAGATCGGAAGTTTTTTTTAGAAAAA
TGTGATCGGGCGATCGGATGGCATAGTGAGCGCGGTCGACGCAAAGCGATAAAGTTAGCCGACCGAATACGAGCCTTTTC
CAAGCCGAAAACGGATTGGATTTTGAATCCGACTGGCGGACCACGAAATCAATAATAAATAGACCAGCAGCTAGGCTTTC
TTCCTCATTTGC--------------------AGTACGCAAGAGAAAGCGAAGAGATCTAGCTT--GCGCTAG-------
-------ACATGGCGTGCATTGCAGCCCCAGTTC------------CCTTTGCTCCTTTCTGCAGGACACCATTTAC---
------------CTCGACCTCGTTGTCGGCCTCGTCCCCTTCGTTCCATCCGAGCCGCGTTCTGGTCAGGTGGGAACCTC
CTCCCCGGGAATGGTTGAAGCTGAATTTCGATGGATCTGTCTATCACGACGGGTCCGGCCGGGCGAGCATCGGCGGCTCC
ATCCGCGACTGCAACGGCCACGTCCTCGTCGCCTTCGCCGAGCCGACGGAGCACTCCACGGTGGGCATAGTGGAGGCGCG
AGCACTGATCCGCGGGCTGCGGCTCGCGATGAGTTTCTTCCGTGGCGGGCTTGTGGTGGAAGGCGACGACCAGGTGCTGG
TGGACCTC----CTGACCGGCAAGGAGATGCAGACCCGCATACCGCTGTCCATGCAACAGGAGATCAAGACTCTGCTTGC
GCACTTCTCGACGTACGAGCTGCAGCACATATACCGCGAGGGCAACCAGGTCGCCCACGTCCTGTGCAAAGAAGCATACC
AGCGACCGGGGGTGTGGAGGAGCGGGATCGTGCCGCACGCCGTGTGGGAGAAGGCGCTCGAAGACATGCATGGCGTGGCG
CACGAGCGGATCTGCAAGAAGAAGAA---CCAG--TGGTAGCTTCCAAGATGGG----CGCGTACCAAGCCAAGCGCAAG
CG------GCGGCATGGTGTCCGACCGGCTGGTCCA--AGAACGTGGCCGGGGAGAAGGTGCTGGCTTCATCGACGTGAT
AAGTTTCGTCGAGATGGATCTG----CATAG--------------------CCGGTGTAGTCGACC---------GGATT
GTAGCGAGGGCAAATTAATCCTTTGTTTGTAG-TCTTGTAGAGTCAC------ACGTGACGAGGTCTTTACACTT--CTC
TGTATTA----C--------------TAGTACGTTTCAAGATGATGTTTACTGTTGAAGCAGCTCTGGATGCGCTTACAG
TAACATCGATCGCTGTG-GCTACGTTGTGCTATGCGCA----CGTAGGGTAATAAAAGATAC---AGCATAATTCATTTA
CTATGATTTCTTTAAGTAGCTGTGCACGAGTGCTTCC---------------------ACGTCAAAATGTGTAGTACTTT
GTTGTTTGTAGGG-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------TCCGTGGACGTGAGGCACGCAGGACAAAGGCGCAGAGA
CTCCTGACCACCACGTCGA-CTCCTGATCAATCGCGACATGGCCGCCGACACCTCGAAGGCCAGGATGCCGAGCCCGTCC
TGTATCGCTCTAGAGCTGGACATGGGCGGTATCGACGACACGCACAGGATGTGGAGGTGAAGAAGGATGCACAGGATGTC
T--GTCTGTGAACTCGTATCTCCCGACTCACAG--------GCGTCACCACGAGAGCACGCCGACGGCGGCGTCCTTCGT
CCTCGTGGCCAACGGCTTCCCCGAGCCCAGCCGCCATGTCCTAGCGCTCTGCCTCGCCCCAAGTTACCCTCCCGCCAAAG
GAATCGGTCCAGGGCGCGCTTGATCGTCGCCTTGGCCGTCATCTTCTCC---------GCCTCCGTGCGGTGCGGTCTCC
TCTTCGACAAGCTCCGGTTCCCCTTGTCGACACCCACGGGCTCGCGTTGGCCTCCTGCAGGCATTGGTGTCGTCCGTTCC
TCCCCGTGCGTCCACGTGCCTGCCTCGCCACGGTGCCGAGCTCCGACGACCGCCGCGACTGGCCATGTGGG
>chr2D_1
ACCCTAGGTTCCCCGAACGTCTATATAAGCCATAGGTTTTAGTCTGTAGAGGCACGA-TGCAAGGTTTAGAGCTTATAAC
TCCTTCTTACGATCTCAAGGTAGATCATATTGTACACTGTACCCCATCACAATCAATATATCAAAAGCAGGACGTAGGAT
TTTATCTCATCAAGAGGGTCCGAACCTGGGTAAATATCATGTCCCTTATGTGTCCTGTTACCATCTAGTTCATATCACCA
AGATTGGGACCCCCTACCCAAGATCTGCCGGTTTTAGCACCGACACCTTGCTGGTGGGAGGGCTATGTTTTTAGATG---
TTTTTTGAGTTTTGTCAGGGTTTTTGTCCTGCTCAGGAAGACGAGACAGCGGCGGCTCCCTGAAGATGGA-TAAGGTTCT
CCCCGTCTAGCCTTCGTTTCTATGGTGCGTCTAGTATCGTCGTTGGGCGTGTGCATGTGTGTCTCTGGTGAATCTATCTT
AGGTGGATTTGTTCAGATCTGGTTGTCGTTTGT----------GTGTCTTCAGGTTAGATCATTTTGATCTATGCTACTC
TTCATATGTGGTGGTTGTTT------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------TTCTGATGCACCGGTC
CT------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------------------------------ATGGAGCCTTAGCATGA
CGACTTCCCGACTG------------------------------------------------------------------
--------------------------------------------------------------------------------
----------TCTACTACAACAAGTTCTGTCTGGCTCCGGTGACA---GAGGG----ACGATTA----------------
------CGGCGACG------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------CGTCTTCATCCCACTTAAGTGTTTATAGTCGTCGGTAGGTGGTCTATGGATTTGCATGTAACTTTCTGT
TGATCA--------TTGTATTGTCATGAT---------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------CGAAGATGAATAAATCGAAAGTT
T-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------
>chr3A_284
ACCTCT--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------GCCGGTGGGAGGGCTCCATTTTTATATGTGT
TTTA--GAGTTTTGTTAGGGTTTGTGTCCTGCTCAGGAAGGCGAGGCGACAGCGGCTCCTTGAAGATGGAATAAGGTTCT
CCCCGCCCAGCCCCCGTTTCAGTGCTGCATCTAGCATCGTCAGTGGGCGTGTGAAGGTGTGTCTCCGGCAGATCTGTTTT
TGGTGGATTTGCTCGGATCTGTTCGCTGTTTGTCTACGTGTTTGTGTCTTCAAGTTGGATCCTTTCGA------------
--------------------------------------------------------------------------------
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--------------------------------CCTACGCTACTCTTCATCGGCGGCGGCTACTGTTCTGGTGCACTGGTC
CT------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------ATAGGTCCTTAGCACGA
CGAATTCCCGACTG------------------------------------------------------------------
--------------------------------------------------------------------------------
----------TCTACTACAACAAGTTTTGCTCGGCTCCGATGAGG---GATGA----GCGATGA----------------
------CGGCGGCG------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------CACCTTCGACTCGCCTCAGATCTTATAGTAGTCGCTAGATAGTCTATGAATCTGAATGTAATTTTTATT
ATTTCTGGTATTCGTTGTACTATCATGAT---------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------------------------TGAAGATGAACACATCGGATGTT
T--TTT--------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------
>chr2A_846
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----------------------------------------------------------CCGGCCGAATAGGAGCCGTTTC
CAAACCGAAAACGGATTTGACTTTGAATCCGACTGGCGGACCACGAAATCAATAATAAATAGACGAGCAGCTAGGCTTTC
TTCCTCATTTGC--------------------AGTACGCGAGAGAAATTGAGGAGATCTAGCTT--GCGCTAGTACTACC
TAGCTAGACATGGCGTGCATCGCAGCCCCAGTTC------------CCTTTGCTCCTTTCTGCAGGACACCATTTAC---
------------CTCGACCTCGTTGTCGGCCTCGTCCCCTCCGTTCCATCCGAGCCGCGTTCTGGTCAGGTGGGAACCTC
CTCCCCGGGGATGGTTGAAGCTGAATTTCGATGGATCTGTCTATCACGACGGGTCCGGCCGGGCGAGCATCGGCGGCTCC
ATCCACGACTGCAACGGCCACGTCCTCGTCGCCTTCGCCGAGCCGACGGAGCACTCCACGGTGGGCATAGTGGAGGCGTG
AGCACTGATCCGCGGGCTGCGGCTCGCGATGAGTTTCTTCCGTGGCGGGCTTGTGGTGGAAGGCGACGACCAGGTGCTGG
AGGACCTC----CTGACCGGCAAGGAGATGCAGGCCCGCATACCGCTGTCCATGCAACAGGAGATCCGCGCGCTGCTTGC
GCACTTCTCGACGTACGAGCTGCAGCACATATACCGCGAGGGCAACCAGGTCGCCCACGTCCTGTGCAAAGAAGCATACC
AGCGACCGGGGGTGTGGAAGAGCGGGATCGTTCCGCACGCCGTCTGGGAGAAGGCGCTGGAAGACATGCATGGGGTGGCG
CACGAGCGGATCTGCAAGAAGAAGCA---GCTG--TGGTAGCTTCCAAGATGGG----CGTGTGCCAAGACAAGCGCAAG
CG------GCGGCGTGGTGTCCGACCGGCTGGTCCAAAAGAACGTGGCCGGCG---------------------------
-AGCTTCGTCGAGATGGATCTG----CAATCTGCATAACCGATTGAGTCGACCGGT-------------TCAGAAGGATT
AT----AGTGTCAATTAATCTTTTGTTTGTAG-TCTTGTATAGTCATACTCATACGTGACGAGGTCTTTACACTT--GTC
TGTATTAGTTACCTTGTAGATGGATCTGCAT-------AGACGATGTTTACTGTTGAAGCAGCTCTGGACGCGCTTACAG
TAAGATCGATCCCTGTG-GCTACGTTGTGCTATGCGCG----CGTAGGGTAGAAGA-----------TGTAATTGATTCA
CTATGATTTCTTTAAGTATCTGTGCACGAGTGCT----------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------
>chr2A_920
--------------------------------------------------------------------------------
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----------------------------------------------------TAATAAATAGACCAGCAGCTAGGCTTTC
TTCCTCATTTGCAGTACTTCTTCCTCATTTGCAGTACGAGAGATAAACTGAAGAGATCAAGGAAAAGCCCTATTACTACC
TAGCTAGACATGGCGTGCATCGCAGCCCCAGTTC------------CCTTTGCTCCTTTCTGCAGAACGCCATTTAC---
------------CTCCACTTCGTTGTCGGCCTCCTCCCCTCCCTTCCATCCGAGCCGCGTTCTGGTCAGGTGGGAGGCTC
CTCCCCGGGGATGGTTGAAGCTGAATTTCGACGGATCCGTCTACCACGACGGGTCCAGCCGGGCGAGCATCGGCGGCGCC
ATCCGTGACTACAACGGC--CGTCCTCGTCGCCTTCGCCGAGCCGACGGAGCACTCCACGGTGGGGATAGTGGAGGCGCG
GGCACTGATCCGCGGGCTGCTGCTGGCGATGAGTTGCTTCCGTGGCGGGCTGGTGGTGGAAGGCGACGACCAGGTGCTGG
TGGACCTCGATCCTGACCGGCAAGGAGATGCAGACCCGCATACCGCTGTCCATGCAACAGGAGATCAACACTCTGCTTAA
GCACTTCTCGACGTACCAGCTGCAACACATATACCGCGAGGGAAACCAGGTCGCCCACGTCCTGTGCAAAGAAGCATACC
AGCGACCGGGGGTGTGGAGGAGCGGGATCGTGCCGCACGCCGTGTGGGAGAAGGCGCTCGAAGACATGCATGGCGTGGCT
CACGAGCGGATCTGCAAGAAGAAGAAGAAGCTG--TGGTAGGTTCGGAGATGGGCGCGCACGTACCAAGCCAAGCGGAAG
CTGGTCCAAGAACGT-----------GGC-------------------CGGGGAGAAGGCGCTGGCTTCATCGACGTGAT
AAGCTTCGTCGAGATGGATCTG----CATAG--------------------CCCGTGGAGTCGACC---------GGATT
GTAGTGAGGGCAGATTAATCCTTTGTAATAGTCTT-----GTAG---AATCATACGTGACGAGGTCTTTACACTT--CTC
TGTATTA----CCTGG----------TAGTACGTTTCAAGACGATGTTTACTGTTGAAGCAGCTCTGGAAGCGCTTACAG
TAACATCTATTGCTGTG-GCTACGTTGTGCTATGCGCA----CGTAGGGTAAAAGA-----------TATAATTCATTCA
CTCTGATTTCTTTAAGTAGCTGTGCACGAGTGCTAGTAGTCTTTCCACTTCAAAATG------------TGTAGTTCTTA
GCTGTTTGTA----------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------
>chr2D_936
AGCTAG--------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------GGCTTTC
TTCCTCATTTGC--------------------GGGACGCAAGAAAAACAGAAGAGATCGCTTGCGG--------------
--------CATGGCGTGCATCGCTGCCCCAGCCTCGTTTGCTCCCTCCTTTGCTCCTCTCTGCAGCAGGATCCCGTTTGC
GCCTCCGCTCAGCTCCACTTCGTTGTCGGCCTCGT--CCTCCGTTCCATCCCAGCCGCATCATGGTGAGGTGGGAGGCTC
CTCCGATGGGCTGGTTGAAGCTAAACTTTGACGGATCCGTCTACCACGACGGGTCCGGCCGGGCGAGCATCGGCGGCGCC
ATCCGCGACTGCAACGGCCACGTCCTCGCCGCCTTCGCCGAGCCGACGGAGCACTCGACGGTGGGGATAGTGGAGGCGCG
GGCACTGATCCGCGGGCTGCGGCTCGCGATGAGTTTCTTCCGTGGCGGGCTGGTGGTGGAAGGCGACGACCAGGTGCTGG
TGGACCTC----CTGACCGGCAAGGAGACGCAGACCCGCATACCGCTGTCGATGCAACAGGAGATCCGCGCGCTGCTCAA
GCACTTCTCGACGTACCAGCTGCAGCACATATACCGCGAGGGCAACCAGGTCGCCCATGTCCTGTGCAAAGAAGCATATC
GGCGGCCAGGGGTGTGGAAGAGCGGGATCGTGCCGCACGCCGTGTGGGAGAAGGCACTGGAGGACATGCATGGCGTGGCG
CACGAGCGGATCTGCAAGAAGAAGCA---ACTG--TGGTAGCTTCCAAGATGGG---GCGCGTACCAAACCAAGCGCAAG
CG------GCGGCGTGGTGTCCGACCGGC-------------------CGGGGAGAAGGTGCTGGCTTCATCGACGTGAT
AAGCTTCGTCGAGATGGATCTA----CCTAG--------------------CCCGTGGAGTCGACC---------GGATT
GTAGTGAGGGCAAATTGATCCTTTGTTTGTAG-TCTTGTAGTAG---AGTCATACGTGACGAGGTCTTTT-ACAT--TTG
TCTGTTAATTACCTCGTAGTAG-----AGTACGTTTCAAGACGATGTTTACTGTTGAAGCAGCTCTGGA-GCGCTCACAG
TAACATCGATCTCTGTG-GCTTCGTTGTGCTATGCACA----TGTAGGGTAAAAGA-----------CATAATTCATTCA
CTCTGATTTCTTGAAGTAGCTGTGCACAA-TGCTAGTAGTCTTTCCACTTCAAAATG------------TGTAGTACTTC
GCTGTTTGTAACAGCTTCGTCTAGCCCCAGAGCGCTGCGTGAGGCGTCGCACCTAGTGCCGCTGCAACCTAGAAGACGAT
TGTGGCGTCCAGGCGCGCGAGGCTGATTCCGCACTTCTCCTCAACGTAGACGCGGTCTAAGTCGTGGAGGAATGGCGCGT
CTGGCAGTCCATGGCATGGCGTCCCCAGGCGACGCGGCGGCGTTGGCAACGCAGCGGTGTCGGCAACGCGGCCAAGATCC
GCCACGAGCTCGCCGCACGTGAGCCGGAGCAGGCGGGACTGTTCCGTGGACGTGAGGCACGCAGGACGAAGGCGCAGAGA
CTCCTGACCACCACGTCGGAG--------------GACATGGCCGCCGCCACCTCAAAGGCCAGGATACTGAGCC-GTCC
TGTCTCGCTCTGGAG-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------
>chr2D_1057
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------CTCCACCTCGTTGTCGGCCTCCTCCCCTCCCTTCCATCCCAGCCGCATCATGGTGAGGTGGGAGGCTC
CTCCGATGGGCTGGTTGAAGCTGAATTTCGACGGATCCGTCTACCACGACGGGTCCGGCCGGGCGAGCATCGGCGGCGCC
ATCCGCGACTGCAACGGCCACGTCCTCGTCGCCTTCGCCGAGCTGACGGAGCACTCCACGGTGGGGATAGTGGAGGCGCG
AGCACTGATCCACGGGCTGCGGCTCGCGATGAGTTTCTTCCGTGGCGGGCTGGTGGTGGAAGGCGACGACCAGGTGCTGG
TGGACCTC----CTGACCGGCAAGGAGACGCAGACGCGTATACCGCTGTCCATGCAACAGGAGATCAAGACTCTGCTTAA
GCACTTCTCGACGTACCAGCTGCAACACATATACCGTGAAGGCAACCAGGTCGCCCACGTCCTGTGCAAAGAAGCATACC
AGCGGCCAGGGGTGTGGAGGAGAGGGATCGTGCCGCACGCCGTCTGGGAGAAGGCGCTGGAGGACATGCATGGCGTGGCG
CACGAGCGGATCTGCAAGAAGAAGCA---GCTG--TGGTAGCTTCGAAGATGA----GCGCGTACCAAGCCAAGCGCAAG
CG------GCGGCATGGTGTCCGACCGGCTGGTCCA--AGAACGTGGCCGGG-AGAAGGTGCTGACTTCATCGACGTGAT
AAGCTTCGTCGAGATGGATCTA----CATAG--------------------CCGGTGGAGTCCACC---------GGATT
GTAGTGTGGGCAAATTAATCTACAAGGTATGACTCTTGTAGAAG---AGTCATACGTGACGAGGTCTTTT-ACACTAGTC
TGTATTAGTTACATCGTCAAGC-----AGTACGTTTCAAGACGATGTTGACTGTTGAAGCAGCTCTGGAAGCGCTTACAG
TAACATCGATCGCTGTG-GCTACGTTGTGCTATGCGCG----C-TAGGGTAAAAGA-----------TATAATTCATTCA
CTCTGATTTCTTTGAGTATCTGTACACGAGTGC--GTATTCTTTCAATTTCAAAATAT---------------GTACTTT
GCTGTTTGTAACACCTTCCTCTCGCTCCACGTCGGGCTCCTCCATGAGGCGCGCTGCAAGCCTGCAATC-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------CCACCACGTCGGGCTCCTGATCAATCGCGACATGGCCGCCGCCACCTCCAAGGCCAGGATGCCGAGCCCGTCC
TGTCTCGCTATGGAGCTGGCCATG--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------
>chr2D_1061
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------ACCTCGTTGTCGGCCTCCTCCCCTCCCTTCCATCCCAGCCGCCTCATGGTGAGGTGGGAGGCTC
CTCCGATGGGCTGGTTGAAGCTGAATTTCGACGGATCCGTCTACCACGACGGGTCCGGCCGGGCGAGCATCGGCGGCGTC
ATCCGCGACTGCAACGGCCACGTCCTCGTCGCGTTCGCCGAGCCGACAGAGCACTCCACGGTGGGGATAGTGGAGGCGCG
GGCACTGATCCGCGGGCTGCTGCTGGCGATGAGTTGCTTCCGTGGCGGGCTGGTGGTGGAAGGCGACGACCAGGTGCTGG
TGGAGCTC----CTGACCGGCAAGGAGACGCAGACGCGTATACCGCTGTCCATGCAACAGGAGATCAAAACTCTGCTTAA
GCACTTCTCGACATACCAGCTGCAGCACATATACCGCGAGGGAAACCAGGTCGCCCACGTCCTGTGCAAAGAAGCATACC
AGCGACCGGGGGTGTGGAGGAGCGGGATCGTGCCGCACGCCGTCTGGGCGAAGGCGCTAGAGGACATGCAGGGCGTGGCG
CACGAGCGGATCTGCAAGAAGAAGAA---GCTG--TGGTAGCTTCCAAGATGGG----CGCGTCCCAAGCCAAGCGGAAG
CG------GCGGCGTGGTGTCCGACCGGCCGGTCCA--AGAACGTGGCCGGGGAGGAGGTGCTGGCTTCATCGACG----
----------------------------------------------------CGGTGGAGTCGACCGGTTCAGAAGGATT
GTAGTGAGGGCAAATTAATCCTTTGTTTGTAG-TT-----GTTG---AGTAATACGTGACGAGGTGTTTACACTT--GTC
TGTATTA----CCTTGTAGTTTGTACTAGTACGTTTCAAGACGATGTTTACTGTTGAAGCAGCTCTGGAAGCGCTTACAG
TAACATCGATCCCTGTG-GCTACGTTGTGCTATATATGCGCACGTAGGGTAATAAAAGATAC--TAGTATAATTCATTCA
CTCTGGTTTCTTTAAGTAGCTGTGCACGAGTGCTTCC---------------------TCGTCAAAATGTGTAGTACTTT
GTTGTTTGTAGGG-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------TCCGTGGACGTGAGGCACGCAGGACGAAGGCGCAGAGA
CTCCTGACCACCACGTCGA-CTCCTGATCAATCGCGACATGGCCGCTGCCACCTCGAAGGCCAGGATGCCGAGCCCGTCC
TGTCTCGCTCTGGAGCTCGCCATGCGTGGTGTCGACGACACGCACAGGATGTGGAGGTGAAGAAGGATGCATAGGATGTC
T--GTCTGTGAACTCGTACCCCCCGGCTCACAG--------GCGTCACCATGAGAGCACGCCGACGGCTGCGTCCTTCGT
CCTCGTGGCCAACGGCTTCCCCGAGCCAAGCCGCCATGTCCTAGCGCTCTGCCTCGCCCCAGG--ACCCTCCCGCCAAAG
GAATCGGTCCAAGGCGCGCTTAATCGTCGCCCTCGCCGTCATCTTCTCC---------GCCTCC-----GTGCGGTCTCC
TCTTCGACAAGCTCCGGTTC------------------------------------------------------------
-----------------------------------------------------------------------
>chr2D_1061
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------ACCTCGTTGTCGGCCTCCTCCCCTCCCTTCCATCCCAGCCGCCTCATGGTGAGGTGGGAGGCTC
CTCCGATGGGCTGGTTCAAGCTGAATTTCGACGGATCCGTTTACCACGACGGGTCCGGCCGGGCGAGCATCGGCGGCGCC
ATCCGTGACTGCAACGGCCACGTCCTCGTCGCCTTCGCCGAGCCGACGGAGCACTCGACGGTGGGGATAGTGGAGGCGCG
AGCACTGATCTACGGGCTGCGGCTCGCGATGAGTTTCTTCTGTGGCGGGCTGGTGGTGGAAGGCGACGACCAGGTGCTGG
TGGAGCTC----CTGACCGGCAAGGGGACGCAGACGCGTATACCGCTGTCCATGCAACAGGAGATCAAGACTCTGCTTAA
GCACTTCTCGACATACCAGCTGCAGCACATATACCGCGAGGGCAACCAGGTCGCCCATGTCCTGTGCAAAGAAGCATATC
GGCGGCCAGGGGTGTGGAAGAGCGGGATCGTGCCGCACGCCGTGTGGGAGAAGGCACTGGAAGACATGCATGGCGTCGCG
CACGAGAGGATCTGCAAGAAGTC---------G--TGGTAGCTTCGAAGATGGG----TGCGTACGAAGCC------AAG
CG------GCGGCGTGGTGTCCGACCGGCCGGTCCA--AGAACGTGGCCGGGGAGAAGGTGCTGGCTTCATCGACGTGAT
AAGCTTCGTCGAGATGGATCTAGCTACATAG--------------------CCGGTGGAGGTGACC---------GGATT
GTAGTGAGGGCACATTAATCCTTTGTTTGTAG-TCTTGTAGTAG---AGTCATATTAG----------------------
----TTA----CCTCG----------TAGTATGTTTCAAGACGATGTTTACTGTTGAAGCAGCTCTGGAAGCGCTTACAG
TAACATCGATCGGTGTG-GCTACGTTGTGCTATGCGCG---ACGTAGGGTAAAAGATA------TAGTATAATTCATTCA
CTCTGATTTCTTTAAGTA--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------
>chr2B_1061
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------ACCTCCTTGTCGGCCTCCACCCCTCCCTTCCATCCCAACCGCCTCATGGTGAGGTGGGAGGTTC
CTCTGATGGGCTGGTTGAAGCTGAATATCGACGGATCCGTTTACCACGACGGGTCCGGCCAGGTGAGAATCGGCGGCACC
ATCCACGACTACCACGGCCGCTTCCTCTTCGCCTTCGCTGAGCCGACGGAGCACTCGACGGTGGGAATATTGGAGGTGCG
AGCACTGAATCACGGGCTGTGGCTCACTATGAGTTTCTTCTATGGCGGGCTGGTGGTGGAAGGCGACGACCAGGTGCTGG
TGGAGCTC----CTTACCGGGAAGGAAAGGTAGACCCGCATACCGATATCGATGCAACAGGAGATCCGCGCACTGCTTGA
GCACTTCTCGACGTACCAGCTGCAGCACATATACCGGGAGGGAAACTAGGTCTCCCAAGTCATGTGCAAACAAGCATACC
AGCGACCAGGGGTATGGACAAGCGGGATCGTGCCGCACGCCATGTGGGAGAAGGCGCTAGAGGACATGCATGGTGTGGCA
CACAAGCGGATCTGCAAGAAGAAGCTATGGTGGGCTGGTGGCTTCCAAGATGGG----CGCGTACCAAGCC------AAG
CGCGAGCGGCGGCGTGGTG-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------
>chr2B_1061
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------ACCTCGTTGTCGGCCTCCTCCCCTCCCTTCCATCCGAGCCGCGTCATGGTAAGGTGGGAGGCTC
CTCCGATGGGCTGGTTGAAGCTGAATTTCGACGGATCCGTCTACCACGACGGGTCCGGCCGGGCGAGCATCGGCGGCGCC
ATCCGCGACTGCAACGGCCACGTCCTCGCCGCCTTTGCCGAGCCGACGGAGCACTCGACGGTGGGGATAGTGGAGGCGCG
AGCACTGATCCGAGGGCTGCGGCTCGCTATGAGTTTCTTCCGTGGCGGGCTGGTGGTGGAAGGCGACGACCAGGTGCTGG
TGGAGCTC----CTGACCGGCAAGGAGATGCAGACCCGCATACCGCAGGCAATGCAACAGGAAATCAAGACTCTGCTCAA
GCACTTCTCGACGTACCAGCTGCAGCACATATACCGCGAGGGCAACCAGGTCGCCCACGTCCTGTGCAAAGAAGCATATC
AGCGGCCAGGGGTGTGGAGGAGCGGGATCGTGCCGCACGCCGTGTGGGAGAAGGCGCTGGAAGACATGCATGGCGTGGCG
CACGAGCGGATCTGCAAGAAGAAGAA---GCTG--TGATAGCTTCCAAGATGGG----CGTGTACCAAGCC------AAG
CGCAAGCGGCGGCGTGGTGTCCGACCGGCCGGTG----------------------------------------------
--GCTTCGTCAAGATGGATCAG----TATAG--------------------CCGGT-------------TCAGAGGGATT
GT----AGTGTCAATTAATCCTTTGTTTGTAGAGTCAT---------------------------------ACTT--GTA
TGTATTA----CCTCGTAGTAC------GTACGTTTCAAGACGATGTTTACTGTTGAAGCAGCTCTGGACGCGCTTACAG
TAACATCGATCCCTGTGAGCTACGTTGTGCTATGCGCA----CGTAGGGTAATAAAAGATACAGTACTATAATTCATTCA
CTCTGGTTTCTTGGAGTATTTGTGCACGAGTAC--GTATTCTTTCAACTACAAAATGAACTTCAAAATGTGCAC------
--------------------------------------------------------------------------------
---TCTGGTTTGCGT-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------ATGTGGAGGTGGAGAAGGGAGATGGGAAGGAG
GCCGTCTGTGAGCCCGTACCTCCCGGCTCACAGTCACCGCGGCTTCGCGACCAGAGCACGCCGCCGACGTCGTCCTTCGT
CCTCGTGGCCAACGGCTTCCC-GAGCCAAGCTGCCATGTCCTAGCGCTCTGCCTCGCCCCAGG--ACCCTCCCGCCAAAG
GAATCGGTCCAAGGCGCGCTTAATCGTCGTCCTCACCGTCATCTTCTCTCAGTTCTCTGCCTCC-----GTGTGTTCTCC
TCTTCGACAAGCTCCGGTTCTCCTT-------------------------------------------------------
-----------------------------------------------------------------------
>chr5A_1085
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------TCGTTCCATCCGAGCCGCACCAT-GTGAGGTGGGAGGCTC
CTCCGATGGGTTGGTTGAAGCTAAACTTTGACGGATCCGTCTACCACAACGGGTCCGGCCGGGCGAGCATCGGCGGCGTC
ATCCGCGACTGCAACGGCCACGTCCTCGTCGCCTTCGCCGAGCCGACGGAGCACTCGACGGTGGGGATAGTGGAGGCGCG
AGCACTGATCCGCGGGCTGCGGCTGGCGATGAGTTTCTTCCGTGGCGGGCTGGTGGTGGAAGGCGACGACCAGGTGCTGG
TGGAGCTC----CTGACCGGGAAGGAGACGCAGACCCGCATACCGCTTTCCATGCAACAGGAGATCCGCGCGCTGCTCAA
GCATTTCTCGACGTACCAGCGTCAGCACATATACCGCGAGGGCAACCAGGTCGCCCACGTCCTGTGCAAAGAAGCATACC
AGCGGCCGGGGGTGTGGAGGAGCGGGATTGTGCCGCACGCCGTGTGGGAGAAGGCGCTGGAGGACATGCATGGCGTGGCG
CATGAGCGGATCTGCAAGAAGAAGCA---GCTG--TGGTAGCTTCGAAGATGGG----CGCGTACCAAGCC------AAG
CGCAAGCGGCGGCGTGGTGTCCGACCGGCCGGTCCA--AGAACGTGGCCGGGGAGAAGGTGCTGGCTTCATCGACGTGAT
AAGCTTCGTCGAGATGGATCTA----CATAG--------------------CCCGTGGAGTCGACCG--------GGATT
GTAGTGAGCGTAAATTGATCCTTTGTTTGTAG-TCTTGTAGTAG---ACTCATACATGACGAGGTCTTTT-ACAT--TTG
TCT-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------
>SNPs
--------SS---S-----------------S--S-S------------------S-S------------------S---
------S--------SSS-----------S-S------S------------------------S--------S----SS-
----------------------S--------S-----SS-----S--S---S--S------SSSSSSS------------
--S----------------S-------S---S----S-----------------------------------S---S-S-
-----S---------------------------------------------SS---------------------------
-S-------------S----S-----------------S-------S-S------------------------S------
----S------------------------------------------------S------------------S-------
------S----S-S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S-------S-----S----
---S-------------S--S-----------------------------------------------------------
-----------------------------------------------SS-------------------------------
--------------------S-----------------------------------------------------------
--------------------------------------------------------------------------------
---------S----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------S------------------------------------------------
--------------------------------------------------------------------------------
---S-----------------------------------------------------S----------------------
----S-----------------------------------------S---------------------------------
-----------------------------------------S---------------------------S----------
------------------------------------------------------------------------------S-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------S------------
------------------------------------------------S-------------------------------
---S-------S-------S----S-S---S----------------------------------------S--------
------------------S------S------------------------------------------------------
---------------------------S---------------------------------S-SS---------------
-----------S---------S---------S-S------------------------------SSSSS-----------
--------------------S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_597
--------------------------------------------------------------------------------
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-----------------TTGTTCTGATGCGCTGGTCT-------------------------------------------
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-----------------------------------------------------------------------
>reverse_3023
--------------------------------------------------------------------------------
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--------------------------------------------------------------ATTGGTGTCGTCCGTTCC
TC---------------------------------------------------------------------
