Multiple sequence alignment - TraesCS2A01G432400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G432400 chr2A 100.000 2231 0 0 1 2231 685409655 685411885 0.000000e+00 4120.0
1 TraesCS2A01G432400 chr2A 81.215 1070 92 47 821 1818 685491355 685492387 0.000000e+00 761.0
2 TraesCS2A01G432400 chr2A 81.727 695 65 34 785 1458 685373446 685374099 7.060000e-145 523.0
3 TraesCS2A01G432400 chr2A 83.959 586 44 21 823 1381 685626660 685627222 1.180000e-142 516.0
4 TraesCS2A01G432400 chr2A 84.501 471 47 17 999 1458 685380584 685381039 2.030000e-120 442.0
5 TraesCS2A01G432400 chr2A 73.832 428 49 31 1424 1805 685627412 685627822 6.510000e-21 111.0
6 TraesCS2A01G432400 chr2D 87.320 765 32 33 660 1388 542777658 542778393 0.000000e+00 815.0
7 TraesCS2A01G432400 chr2D 82.458 781 62 37 756 1489 542710305 542711057 4.070000e-172 614.0
8 TraesCS2A01G432400 chr2D 92.021 376 23 4 3 375 542777175 542777546 2.540000e-144 521.0
9 TraesCS2A01G432400 chr2D 88.732 426 12 10 1400 1805 542778444 542778853 2.570000e-134 488.0
10 TraesCS2A01G432400 chr2D 88.020 409 24 13 823 1231 542328626 542329009 5.610000e-126 460.0
11 TraesCS2A01G432400 chr2D 88.398 362 19 11 871 1232 542543827 542544165 4.430000e-112 414.0
12 TraesCS2A01G432400 chr2D 87.200 375 18 16 3 375 542689227 542689573 1.240000e-107 399.0
13 TraesCS2A01G432400 chr2D 90.566 53 5 0 1406 1458 542544363 542544415 1.110000e-08 71.3
14 TraesCS2A01G432400 chr2D 97.297 37 1 0 1314 1350 542329113 542329149 1.850000e-06 63.9
15 TraesCS2A01G432400 chr2D 94.737 38 1 1 558 595 190325207 190325171 8.610000e-05 58.4
16 TraesCS2A01G432400 chr2B 88.294 598 32 17 660 1236 647603504 647604084 0.000000e+00 682.0
17 TraesCS2A01G432400 chr2B 87.778 360 21 14 880 1235 647538946 647539286 1.240000e-107 399.0
18 TraesCS2A01G432400 chr2B 84.152 448 26 17 1400 1814 647604329 647604764 2.080000e-105 392.0
19 TraesCS2A01G432400 chr2B 88.387 310 25 6 3 312 647600995 647601293 1.630000e-96 363.0
20 TraesCS2A01G432400 chr2B 93.886 229 13 1 333 560 647603245 647603473 5.900000e-91 344.0
21 TraesCS2A01G432400 chr2B 82.692 156 15 8 1314 1458 647539464 647539618 6.470000e-26 128.0
22 TraesCS2A01G432400 chr2B 94.872 39 1 1 558 596 247362136 247362099 2.390000e-05 60.2
23 TraesCS2A01G432400 chr4D 76.393 377 81 8 1858 2230 401073652 401073280 1.750000e-46 196.0
24 TraesCS2A01G432400 chr4D 78.378 185 33 4 1899 2076 6392175 6392359 1.810000e-21 113.0
25 TraesCS2A01G432400 chr5A 75.550 409 91 8 1816 2218 585099475 585099880 2.260000e-45 193.0
26 TraesCS2A01G432400 chr3B 74.528 424 90 14 1818 2231 592865860 592865445 3.810000e-38 169.0
27 TraesCS2A01G432400 chr6D 74.038 416 88 15 1816 2225 397339179 397339580 3.840000e-33 152.0
28 TraesCS2A01G432400 chr3A 74.531 373 79 11 1815 2182 573827903 573827542 4.960000e-32 148.0
29 TraesCS2A01G432400 chr3A 74.373 359 84 6 1814 2166 527412498 527412142 1.790000e-31 147.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G432400 chr2A 685409655 685411885 2230 False 4120.00 4120 100.000000 1 2231 1 chr2A.!!$F3 2230
1 TraesCS2A01G432400 chr2A 685491355 685492387 1032 False 761.00 761 81.215000 821 1818 1 chr2A.!!$F4 997
2 TraesCS2A01G432400 chr2A 685373446 685374099 653 False 523.00 523 81.727000 785 1458 1 chr2A.!!$F1 673
3 TraesCS2A01G432400 chr2A 685626660 685627822 1162 False 313.50 516 78.895500 823 1805 2 chr2A.!!$F5 982
4 TraesCS2A01G432400 chr2D 542710305 542711057 752 False 614.00 614 82.458000 756 1489 1 chr2D.!!$F2 733
5 TraesCS2A01G432400 chr2D 542777175 542778853 1678 False 608.00 815 89.357667 3 1805 3 chr2D.!!$F5 1802
6 TraesCS2A01G432400 chr2D 542328626 542329149 523 False 261.95 460 92.658500 823 1350 2 chr2D.!!$F3 527
7 TraesCS2A01G432400 chr2D 542543827 542544415 588 False 242.65 414 89.482000 871 1458 2 chr2D.!!$F4 587
8 TraesCS2A01G432400 chr2B 647600995 647604764 3769 False 445.25 682 88.679750 3 1814 4 chr2B.!!$F2 1811
9 TraesCS2A01G432400 chr2B 647538946 647539618 672 False 263.50 399 85.235000 880 1458 2 chr2B.!!$F1 578

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
867 2848 0.108329 CCGCTATATAACGGGGCCTG 60.108 60.0 15.45 11.83 45.74 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2131 4588 0.03582 TACCCGTTCATGGCTTCCAC 60.036 55.0 0.0 0.0 35.8 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 4.836125 ATGTGTGTGTTGAACTCAATCC 57.164 40.909 1.26 0.00 38.24 3.01
76 77 1.541670 GGCTTGTAGGGTGACGAAACA 60.542 52.381 0.00 0.00 0.00 2.83
168 169 5.221441 GGAGGCTACTTCCAACAACAAAAAT 60.221 40.000 0.00 0.00 0.00 1.82
242 243 6.952358 ACCTAGAGTTACATTGAAGTGGAGTA 59.048 38.462 0.00 0.00 0.00 2.59
243 244 7.453752 ACCTAGAGTTACATTGAAGTGGAGTAA 59.546 37.037 0.00 0.00 0.00 2.24
244 245 8.478877 CCTAGAGTTACATTGAAGTGGAGTAAT 58.521 37.037 0.00 0.00 0.00 1.89
312 313 3.259207 GTAGTATACTGGCGGTGTACG 57.741 52.381 22.52 0.00 44.00 3.67
374 2306 7.069569 CGGCCGATGTTAATATGTTTCTTAAG 58.930 38.462 24.07 0.00 0.00 1.85
486 2445 8.053355 TCCATTTCTCAGTACTCATGACTAGTA 58.947 37.037 0.00 0.00 0.00 1.82
487 2446 8.349245 CCATTTCTCAGTACTCATGACTAGTAG 58.651 40.741 0.00 0.00 30.26 2.57
522 2481 3.181499 CGAGATACACTAGCGGTTTGTCT 60.181 47.826 4.97 0.00 30.59 3.41
565 2524 1.808411 GCAGCAGCTACTTTACCACA 58.192 50.000 0.00 0.00 37.91 4.17
566 2525 2.359900 GCAGCAGCTACTTTACCACAT 58.640 47.619 0.00 0.00 37.91 3.21
567 2526 2.096496 GCAGCAGCTACTTTACCACATG 59.904 50.000 0.00 0.00 37.91 3.21
568 2527 2.679837 CAGCAGCTACTTTACCACATGG 59.320 50.000 0.00 0.00 42.17 3.66
583 2542 2.127271 CATGGTCCATGTGGTAAGCA 57.873 50.000 21.98 0.00 37.12 3.91
584 2543 2.445427 CATGGTCCATGTGGTAAGCAA 58.555 47.619 21.98 0.00 37.12 3.91
585 2544 2.666272 TGGTCCATGTGGTAAGCAAA 57.334 45.000 0.00 0.00 36.34 3.68
586 2545 2.235016 TGGTCCATGTGGTAAGCAAAC 58.765 47.619 0.00 0.00 36.34 2.93
587 2546 2.158534 TGGTCCATGTGGTAAGCAAACT 60.159 45.455 0.00 0.00 36.34 2.66
588 2547 3.073209 TGGTCCATGTGGTAAGCAAACTA 59.927 43.478 0.00 0.00 36.34 2.24
589 2548 4.263727 TGGTCCATGTGGTAAGCAAACTAT 60.264 41.667 0.00 0.00 36.34 2.12
590 2549 5.045505 TGGTCCATGTGGTAAGCAAACTATA 60.046 40.000 0.00 0.00 36.34 1.31
591 2550 5.883673 GGTCCATGTGGTAAGCAAACTATAA 59.116 40.000 0.00 0.00 36.34 0.98
592 2551 6.376018 GGTCCATGTGGTAAGCAAACTATAAA 59.624 38.462 0.00 0.00 36.34 1.40
593 2552 7.094118 GGTCCATGTGGTAAGCAAACTATAAAA 60.094 37.037 0.00 0.00 36.34 1.52
594 2553 8.301002 GTCCATGTGGTAAGCAAACTATAAAAA 58.699 33.333 0.00 0.00 36.34 1.94
746 2716 2.668550 GGGTTGCCCACACTCGAC 60.669 66.667 0.00 0.00 44.65 4.20
763 2733 3.824443 CTCGACCAGGTAAAAACCCAAAT 59.176 43.478 0.00 0.00 0.00 2.32
852 2833 4.824515 CTCGTCCCCTCCTCCGCT 62.825 72.222 0.00 0.00 0.00 5.52
853 2834 3.414193 TCGTCCCCTCCTCCGCTA 61.414 66.667 0.00 0.00 0.00 4.26
854 2835 2.203509 CGTCCCCTCCTCCGCTAT 60.204 66.667 0.00 0.00 0.00 2.97
855 2836 1.074423 CGTCCCCTCCTCCGCTATA 59.926 63.158 0.00 0.00 0.00 1.31
856 2837 0.323542 CGTCCCCTCCTCCGCTATAT 60.324 60.000 0.00 0.00 0.00 0.86
857 2838 1.064906 CGTCCCCTCCTCCGCTATATA 60.065 57.143 0.00 0.00 0.00 0.86
858 2839 2.619849 CGTCCCCTCCTCCGCTATATAA 60.620 54.545 0.00 0.00 0.00 0.98
859 2840 2.759535 GTCCCCTCCTCCGCTATATAAC 59.240 54.545 0.00 0.00 0.00 1.89
860 2841 1.749634 CCCCTCCTCCGCTATATAACG 59.250 57.143 0.00 0.00 0.00 3.18
865 2846 4.926207 CCGCTATATAACGGGGCC 57.074 61.111 15.45 0.00 45.74 5.80
866 2847 2.283824 CCGCTATATAACGGGGCCT 58.716 57.895 15.45 0.00 45.74 5.19
867 2848 0.108329 CCGCTATATAACGGGGCCTG 60.108 60.000 15.45 11.83 45.74 4.85
868 2849 0.108329 CGCTATATAACGGGGCCTGG 60.108 60.000 18.49 5.37 0.00 4.45
869 2850 0.392595 GCTATATAACGGGGCCTGGC 60.393 60.000 18.49 11.05 0.00 4.85
914 2922 3.760684 CTCAAAATCCCCAGACTTTCCAG 59.239 47.826 0.00 0.00 0.00 3.86
957 2974 0.691078 CCGATCCCCCTCTTCTTCCA 60.691 60.000 0.00 0.00 0.00 3.53
964 2981 1.066787 CCCCTCTTCTTCCACTCGTTC 60.067 57.143 0.00 0.00 0.00 3.95
1038 3059 2.598045 CGGAGCGGTGAAGATGATG 58.402 57.895 0.00 0.00 0.00 3.07
1188 3209 2.802816 CAAGAACAAGCGCAAGTACTCT 59.197 45.455 11.47 5.40 41.68 3.24
1235 3262 1.096386 ACCGTCTACAGCTAGCTCGG 61.096 60.000 29.94 29.94 40.17 4.63
1396 3711 9.663365 ATTCCTCTAGTTTCCTAGTAGCTAATT 57.337 33.333 0.00 0.00 41.31 1.40
1490 3851 1.676006 CACCGGCCTGTATTGGAAATC 59.324 52.381 0.00 0.00 0.00 2.17
1492 3853 2.222027 CCGGCCTGTATTGGAAATCTC 58.778 52.381 0.00 0.00 0.00 2.75
1520 3899 4.024809 GCGCTTCCTTCATTAAGATGGTAC 60.025 45.833 0.00 0.00 41.23 3.34
1642 4066 0.179134 GCTACGGAATCACTGTCGCT 60.179 55.000 0.00 0.00 41.43 4.93
1643 4067 1.550065 CTACGGAATCACTGTCGCTG 58.450 55.000 0.00 0.00 39.10 5.18
1644 4068 0.457853 TACGGAATCACTGTCGCTGC 60.458 55.000 0.00 0.00 39.10 5.25
1645 4069 1.737735 CGGAATCACTGTCGCTGCA 60.738 57.895 0.00 0.00 0.00 4.41
1670 4101 4.813161 GCATGTATTGTGCTGATCACTACT 59.187 41.667 0.00 0.00 45.81 2.57
1672 4103 5.405935 TGTATTGTGCTGATCACTACTGT 57.594 39.130 0.00 0.00 45.81 3.55
1673 4104 6.524101 TGTATTGTGCTGATCACTACTGTA 57.476 37.500 0.00 0.00 45.81 2.74
1674 4105 6.330278 TGTATTGTGCTGATCACTACTGTAC 58.670 40.000 0.00 3.01 45.81 2.90
1675 4106 4.864704 TTGTGCTGATCACTACTGTACA 57.135 40.909 0.00 0.00 45.81 2.90
1699 4130 2.480555 CAGCCACAAATCGACGGC 59.519 61.111 0.00 0.00 45.23 5.68
1736 4179 1.286880 GTGTGCATGCTCCCACAAC 59.713 57.895 20.33 7.20 42.90 3.32
1737 4180 1.902918 TGTGCATGCTCCCACAACC 60.903 57.895 20.33 0.00 38.87 3.77
1738 4181 1.902918 GTGCATGCTCCCACAACCA 60.903 57.895 20.33 0.00 32.37 3.67
1739 4182 1.902918 TGCATGCTCCCACAACCAC 60.903 57.895 20.33 0.00 0.00 4.16
1740 4183 1.902918 GCATGCTCCCACAACCACA 60.903 57.895 11.37 0.00 0.00 4.17
1741 4184 1.462731 GCATGCTCCCACAACCACAA 61.463 55.000 11.37 0.00 0.00 3.33
1751 4194 0.969917 ACAACCACAAGCCACAGCAA 60.970 50.000 0.00 0.00 43.56 3.91
1799 4256 0.108041 TGTTCCTTTCGCGGGTATCC 60.108 55.000 6.13 0.00 0.00 2.59
1822 4279 2.887360 GCCGTACGACTAAGGCCA 59.113 61.111 18.76 0.00 40.62 5.36
1823 4280 1.216178 GCCGTACGACTAAGGCCAA 59.784 57.895 18.76 0.00 40.62 4.52
1824 4281 0.179092 GCCGTACGACTAAGGCCAAT 60.179 55.000 18.76 0.00 40.62 3.16
1825 4282 1.741394 GCCGTACGACTAAGGCCAATT 60.741 52.381 18.76 0.00 40.62 2.32
1826 4283 2.199236 CCGTACGACTAAGGCCAATTC 58.801 52.381 18.76 0.00 0.00 2.17
1827 4284 2.199236 CGTACGACTAAGGCCAATTCC 58.801 52.381 10.44 0.00 0.00 3.01
1828 4285 2.417651 CGTACGACTAAGGCCAATTCCA 60.418 50.000 10.44 0.00 0.00 3.53
1829 4286 2.871096 ACGACTAAGGCCAATTCCAA 57.129 45.000 5.01 0.00 0.00 3.53
1830 4287 2.433436 ACGACTAAGGCCAATTCCAAC 58.567 47.619 5.01 0.00 0.00 3.77
1831 4288 1.396996 CGACTAAGGCCAATTCCAACG 59.603 52.381 5.01 0.00 0.00 4.10
1832 4289 1.132453 GACTAAGGCCAATTCCAACGC 59.868 52.381 5.01 0.00 0.00 4.84
1833 4290 1.173043 CTAAGGCCAATTCCAACGCA 58.827 50.000 5.01 0.00 0.00 5.24
1834 4291 0.885196 TAAGGCCAATTCCAACGCAC 59.115 50.000 5.01 0.00 0.00 5.34
1835 4292 1.112315 AAGGCCAATTCCAACGCACA 61.112 50.000 5.01 0.00 0.00 4.57
1836 4293 1.112315 AGGCCAATTCCAACGCACAA 61.112 50.000 5.01 0.00 0.00 3.33
1837 4294 0.037419 GGCCAATTCCAACGCACAAT 60.037 50.000 0.00 0.00 0.00 2.71
1838 4295 1.349234 GCCAATTCCAACGCACAATC 58.651 50.000 0.00 0.00 0.00 2.67
1839 4296 1.994916 CCAATTCCAACGCACAATCC 58.005 50.000 0.00 0.00 0.00 3.01
1840 4297 1.404047 CCAATTCCAACGCACAATCCC 60.404 52.381 0.00 0.00 0.00 3.85
1841 4298 1.271934 CAATTCCAACGCACAATCCCA 59.728 47.619 0.00 0.00 0.00 4.37
1842 4299 1.851304 ATTCCAACGCACAATCCCAT 58.149 45.000 0.00 0.00 0.00 4.00
1843 4300 1.173043 TTCCAACGCACAATCCCATC 58.827 50.000 0.00 0.00 0.00 3.51
1844 4301 0.679640 TCCAACGCACAATCCCATCC 60.680 55.000 0.00 0.00 0.00 3.51
1845 4302 1.429021 CAACGCACAATCCCATCCG 59.571 57.895 0.00 0.00 0.00 4.18
1846 4303 1.748879 AACGCACAATCCCATCCGG 60.749 57.895 0.00 0.00 0.00 5.14
1847 4304 3.585990 CGCACAATCCCATCCGGC 61.586 66.667 0.00 0.00 0.00 6.13
1848 4305 3.219198 GCACAATCCCATCCGGCC 61.219 66.667 0.00 0.00 0.00 6.13
1849 4306 2.519302 CACAATCCCATCCGGCCC 60.519 66.667 0.00 0.00 0.00 5.80
1850 4307 4.189580 ACAATCCCATCCGGCCCG 62.190 66.667 0.00 0.00 0.00 6.13
1874 4331 4.837704 CGTATTCGTTTTGGTTCAAACG 57.162 40.909 11.52 11.52 32.79 3.60
1875 4332 4.516359 CGTATTCGTTTTGGTTCAAACGA 58.484 39.130 15.41 15.41 36.23 3.85
1876 4333 4.962751 CGTATTCGTTTTGGTTCAAACGAA 59.037 37.500 26.96 26.96 43.23 3.85
1877 4334 5.109039 CGTATTCGTTTTGGTTCAAACGAAC 60.109 40.000 27.19 18.87 42.65 3.95
1878 4335 3.826236 TCGTTTTGGTTCAAACGAACA 57.174 38.095 16.67 0.00 43.87 3.18
1879 4336 3.749404 TCGTTTTGGTTCAAACGAACAG 58.251 40.909 16.67 0.14 43.87 3.16
1880 4337 3.436015 TCGTTTTGGTTCAAACGAACAGA 59.564 39.130 16.67 0.00 43.87 3.41
1881 4338 3.540738 CGTTTTGGTTCAAACGAACAGAC 59.459 43.478 12.22 0.00 43.87 3.51
1882 4339 3.392769 TTTGGTTCAAACGAACAGACG 57.607 42.857 7.56 0.00 43.87 4.18
1883 4340 1.292061 TGGTTCAAACGAACAGACGG 58.708 50.000 7.56 0.00 43.87 4.79
1884 4341 0.041576 GGTTCAAACGAACAGACGGC 60.042 55.000 7.56 0.00 43.87 5.68
1885 4342 0.653636 GTTCAAACGAACAGACGGCA 59.346 50.000 0.00 0.00 42.04 5.69
1886 4343 0.653636 TTCAAACGAACAGACGGCAC 59.346 50.000 0.00 0.00 37.61 5.01
1907 4364 4.570663 CCGACGCTCGACCCCATC 62.571 72.222 8.63 0.00 43.74 3.51
1908 4365 4.570663 CGACGCTCGACCCCATCC 62.571 72.222 0.00 0.00 43.74 3.51
1909 4366 3.148279 GACGCTCGACCCCATCCT 61.148 66.667 0.00 0.00 0.00 3.24
1910 4367 2.683933 ACGCTCGACCCCATCCTT 60.684 61.111 0.00 0.00 0.00 3.36
1911 4368 1.380785 ACGCTCGACCCCATCCTTA 60.381 57.895 0.00 0.00 0.00 2.69
1912 4369 0.974010 ACGCTCGACCCCATCCTTAA 60.974 55.000 0.00 0.00 0.00 1.85
1913 4370 0.393077 CGCTCGACCCCATCCTTAAT 59.607 55.000 0.00 0.00 0.00 1.40
1914 4371 1.202651 CGCTCGACCCCATCCTTAATT 60.203 52.381 0.00 0.00 0.00 1.40
1915 4372 2.222027 GCTCGACCCCATCCTTAATTG 58.778 52.381 0.00 0.00 0.00 2.32
1916 4373 2.421529 GCTCGACCCCATCCTTAATTGT 60.422 50.000 0.00 0.00 0.00 2.71
1917 4374 3.467803 CTCGACCCCATCCTTAATTGTC 58.532 50.000 0.00 0.00 0.00 3.18
1918 4375 2.171870 TCGACCCCATCCTTAATTGTCC 59.828 50.000 0.00 0.00 0.00 4.02
1919 4376 2.092646 CGACCCCATCCTTAATTGTCCA 60.093 50.000 0.00 0.00 0.00 4.02
1920 4377 3.435026 CGACCCCATCCTTAATTGTCCAT 60.435 47.826 0.00 0.00 0.00 3.41
1921 4378 4.546674 GACCCCATCCTTAATTGTCCATT 58.453 43.478 0.00 0.00 0.00 3.16
1922 4379 4.959080 ACCCCATCCTTAATTGTCCATTT 58.041 39.130 0.00 0.00 0.00 2.32
1923 4380 4.716287 ACCCCATCCTTAATTGTCCATTTG 59.284 41.667 0.00 0.00 0.00 2.32
1924 4381 4.443315 CCCCATCCTTAATTGTCCATTTGC 60.443 45.833 0.00 0.00 0.00 3.68
1925 4382 4.406649 CCCATCCTTAATTGTCCATTTGCT 59.593 41.667 0.00 0.00 0.00 3.91
1926 4383 5.598005 CCCATCCTTAATTGTCCATTTGCTA 59.402 40.000 0.00 0.00 0.00 3.49
1927 4384 6.268387 CCCATCCTTAATTGTCCATTTGCTAT 59.732 38.462 0.00 0.00 0.00 2.97
1928 4385 7.373493 CCATCCTTAATTGTCCATTTGCTATC 58.627 38.462 0.00 0.00 0.00 2.08
1929 4386 6.959639 TCCTTAATTGTCCATTTGCTATCC 57.040 37.500 0.00 0.00 0.00 2.59
1930 4387 5.530915 TCCTTAATTGTCCATTTGCTATCCG 59.469 40.000 0.00 0.00 0.00 4.18
1931 4388 5.278463 CCTTAATTGTCCATTTGCTATCCGG 60.278 44.000 0.00 0.00 0.00 5.14
1932 4389 2.799126 TTGTCCATTTGCTATCCGGT 57.201 45.000 0.00 0.00 0.00 5.28
1933 4390 2.325583 TGTCCATTTGCTATCCGGTC 57.674 50.000 0.00 0.00 0.00 4.79
1934 4391 1.134220 TGTCCATTTGCTATCCGGTCC 60.134 52.381 0.00 0.00 0.00 4.46
1935 4392 0.105964 TCCATTTGCTATCCGGTCCG 59.894 55.000 3.60 3.60 0.00 4.79
1936 4393 0.179056 CCATTTGCTATCCGGTCCGT 60.179 55.000 11.06 0.00 0.00 4.69
1937 4394 1.217882 CATTTGCTATCCGGTCCGTC 58.782 55.000 11.06 0.00 0.00 4.79
1938 4395 0.106149 ATTTGCTATCCGGTCCGTCC 59.894 55.000 11.06 0.00 0.00 4.79
1939 4396 1.963464 TTTGCTATCCGGTCCGTCCC 61.963 60.000 11.06 0.00 0.00 4.46
1940 4397 2.836360 GCTATCCGGTCCGTCCCA 60.836 66.667 11.06 0.00 0.00 4.37
1941 4398 2.207924 GCTATCCGGTCCGTCCCAT 61.208 63.158 11.06 0.00 0.00 4.00
1942 4399 1.755393 GCTATCCGGTCCGTCCCATT 61.755 60.000 11.06 0.00 0.00 3.16
1943 4400 0.756903 CTATCCGGTCCGTCCCATTT 59.243 55.000 11.06 0.00 0.00 2.32
1944 4401 1.140252 CTATCCGGTCCGTCCCATTTT 59.860 52.381 11.06 0.00 0.00 1.82
1945 4402 0.330267 ATCCGGTCCGTCCCATTTTT 59.670 50.000 11.06 0.00 0.00 1.94
1946 4403 0.606944 TCCGGTCCGTCCCATTTTTG 60.607 55.000 11.06 0.00 0.00 2.44
1947 4404 0.606944 CCGGTCCGTCCCATTTTTGA 60.607 55.000 11.06 0.00 0.00 2.69
1948 4405 0.519961 CGGTCCGTCCCATTTTTGAC 59.480 55.000 2.08 0.00 0.00 3.18
1958 4415 7.255770 CGTCCCATTTTTGACGTAAATTTAC 57.744 36.000 16.87 16.87 46.83 2.01
1959 4416 6.856938 CGTCCCATTTTTGACGTAAATTTACA 59.143 34.615 24.27 6.10 46.83 2.41
1960 4417 7.149096 CGTCCCATTTTTGACGTAAATTTACAC 60.149 37.037 24.27 17.99 46.83 2.90
1961 4418 7.115236 GTCCCATTTTTGACGTAAATTTACACC 59.885 37.037 24.27 16.22 33.28 4.16
1962 4419 7.014422 TCCCATTTTTGACGTAAATTTACACCT 59.986 33.333 24.27 8.99 33.28 4.00
1963 4420 7.115663 CCCATTTTTGACGTAAATTTACACCTG 59.884 37.037 24.27 12.63 33.28 4.00
1964 4421 7.863375 CCATTTTTGACGTAAATTTACACCTGA 59.137 33.333 24.27 7.62 33.28 3.86
1965 4422 9.405587 CATTTTTGACGTAAATTTACACCTGAT 57.594 29.630 24.27 9.08 33.28 2.90
1966 4423 9.974980 ATTTTTGACGTAAATTTACACCTGATT 57.025 25.926 24.27 3.95 33.28 2.57
1967 4424 9.804758 TTTTTGACGTAAATTTACACCTGATTT 57.195 25.926 24.27 2.00 33.28 2.17
1969 4426 9.881529 TTTGACGTAAATTTACACCTGATTTAC 57.118 29.630 24.27 7.70 40.36 2.01
1974 4431 8.031848 GTAAATTTACACCTGATTTACGTCCA 57.968 34.615 20.95 0.00 36.85 4.02
1975 4432 6.737254 AATTTACACCTGATTTACGTCCAG 57.263 37.500 0.00 0.00 0.00 3.86
1976 4433 5.471556 TTTACACCTGATTTACGTCCAGA 57.528 39.130 0.00 0.00 0.00 3.86
1977 4434 3.314541 ACACCTGATTTACGTCCAGAC 57.685 47.619 0.00 0.00 0.00 3.51
1988 4445 4.047059 TCCAGACGGACGGCGAAC 62.047 66.667 16.62 7.14 35.91 3.95
2032 4489 4.812476 CGCCTCGAACCCGCATGA 62.812 66.667 0.00 0.00 35.37 3.07
2033 4490 2.203070 GCCTCGAACCCGCATGAT 60.203 61.111 0.00 0.00 35.37 2.45
2034 4491 1.069090 GCCTCGAACCCGCATGATA 59.931 57.895 0.00 0.00 35.37 2.15
2035 4492 0.946221 GCCTCGAACCCGCATGATAG 60.946 60.000 0.00 0.00 35.37 2.08
2036 4493 0.946221 CCTCGAACCCGCATGATAGC 60.946 60.000 0.00 0.00 35.37 2.97
2037 4494 0.946221 CTCGAACCCGCATGATAGCC 60.946 60.000 0.00 0.00 35.37 3.93
2038 4495 2.310233 CGAACCCGCATGATAGCCG 61.310 63.158 0.00 0.00 0.00 5.52
2039 4496 2.591715 AACCCGCATGATAGCCGC 60.592 61.111 0.00 0.00 0.00 6.53
2040 4497 4.626081 ACCCGCATGATAGCCGCC 62.626 66.667 0.00 0.00 0.00 6.13
2042 4499 4.624364 CCGCATGATAGCCGCCCA 62.624 66.667 0.00 0.00 0.00 5.36
2043 4500 3.349006 CGCATGATAGCCGCCCAC 61.349 66.667 0.00 0.00 0.00 4.61
2044 4501 2.980233 GCATGATAGCCGCCCACC 60.980 66.667 0.00 0.00 0.00 4.61
2045 4502 2.831770 CATGATAGCCGCCCACCT 59.168 61.111 0.00 0.00 0.00 4.00
2046 4503 2.057830 CATGATAGCCGCCCACCTA 58.942 57.895 0.00 0.00 0.00 3.08
2047 4504 0.320771 CATGATAGCCGCCCACCTAC 60.321 60.000 0.00 0.00 0.00 3.18
2048 4505 1.481056 ATGATAGCCGCCCACCTACC 61.481 60.000 0.00 0.00 0.00 3.18
2049 4506 1.837499 GATAGCCGCCCACCTACCT 60.837 63.158 0.00 0.00 0.00 3.08
2050 4507 1.817911 GATAGCCGCCCACCTACCTC 61.818 65.000 0.00 0.00 0.00 3.85
2054 4511 3.782443 CGCCCACCTACCTCCCAC 61.782 72.222 0.00 0.00 0.00 4.61
2055 4512 3.408853 GCCCACCTACCTCCCACC 61.409 72.222 0.00 0.00 0.00 4.61
2056 4513 3.081409 CCCACCTACCTCCCACCG 61.081 72.222 0.00 0.00 0.00 4.94
2057 4514 3.782443 CCACCTACCTCCCACCGC 61.782 72.222 0.00 0.00 0.00 5.68
2058 4515 3.782443 CACCTACCTCCCACCGCC 61.782 72.222 0.00 0.00 0.00 6.13
2066 4523 3.690685 CTCCCACCGCCCGCATTTA 62.691 63.158 0.00 0.00 0.00 1.40
2067 4524 3.514362 CCCACCGCCCGCATTTAC 61.514 66.667 0.00 0.00 0.00 2.01
2068 4525 3.871574 CCACCGCCCGCATTTACG 61.872 66.667 0.00 0.00 0.00 3.18
2084 4541 2.733218 CGGCACACGCTCTTTCGA 60.733 61.111 0.00 0.00 38.60 3.71
2085 4542 2.094659 CGGCACACGCTCTTTCGAT 61.095 57.895 0.00 0.00 38.60 3.59
2086 4543 1.710339 GGCACACGCTCTTTCGATC 59.290 57.895 0.00 0.00 38.60 3.69
2087 4544 1.696832 GGCACACGCTCTTTCGATCC 61.697 60.000 0.00 0.00 38.60 3.36
2088 4545 1.696832 GCACACGCTCTTTCGATCCC 61.697 60.000 0.00 0.00 34.30 3.85
2089 4546 0.389817 CACACGCTCTTTCGATCCCA 60.390 55.000 0.00 0.00 0.00 4.37
2090 4547 0.389948 ACACGCTCTTTCGATCCCAC 60.390 55.000 0.00 0.00 0.00 4.61
2091 4548 1.084370 CACGCTCTTTCGATCCCACC 61.084 60.000 0.00 0.00 0.00 4.61
2092 4549 1.258445 ACGCTCTTTCGATCCCACCT 61.258 55.000 0.00 0.00 0.00 4.00
2093 4550 0.528684 CGCTCTTTCGATCCCACCTC 60.529 60.000 0.00 0.00 0.00 3.85
2094 4551 0.528684 GCTCTTTCGATCCCACCTCG 60.529 60.000 0.00 0.00 37.47 4.63
2095 4552 0.528684 CTCTTTCGATCCCACCTCGC 60.529 60.000 0.00 0.00 36.11 5.03
2096 4553 1.218047 CTTTCGATCCCACCTCGCA 59.782 57.895 0.00 0.00 36.11 5.10
2097 4554 0.391130 CTTTCGATCCCACCTCGCAA 60.391 55.000 0.00 0.00 36.11 4.85
2098 4555 0.672401 TTTCGATCCCACCTCGCAAC 60.672 55.000 0.00 0.00 36.11 4.17
2099 4556 2.511600 CGATCCCACCTCGCAACC 60.512 66.667 0.00 0.00 0.00 3.77
2100 4557 2.668632 GATCCCACCTCGCAACCA 59.331 61.111 0.00 0.00 0.00 3.67
2101 4558 1.745489 GATCCCACCTCGCAACCAC 60.745 63.158 0.00 0.00 0.00 4.16
2102 4559 3.268103 ATCCCACCTCGCAACCACC 62.268 63.158 0.00 0.00 0.00 4.61
2119 4576 2.670251 CCGGCCAAGCGGTTGTTA 60.670 61.111 24.38 0.00 33.28 2.41
2120 4577 2.043980 CCGGCCAAGCGGTTGTTAT 61.044 57.895 24.38 0.00 33.28 1.89
2121 4578 1.427819 CGGCCAAGCGGTTGTTATC 59.572 57.895 24.38 11.10 33.28 1.75
2122 4579 1.807226 GGCCAAGCGGTTGTTATCC 59.193 57.895 24.38 15.64 33.28 2.59
2123 4580 0.679960 GGCCAAGCGGTTGTTATCCT 60.680 55.000 24.38 0.00 33.28 3.24
2124 4581 1.173913 GCCAAGCGGTTGTTATCCTT 58.826 50.000 24.38 0.00 33.28 3.36
2125 4582 1.544246 GCCAAGCGGTTGTTATCCTTT 59.456 47.619 24.38 0.00 33.28 3.11
2126 4583 2.029380 GCCAAGCGGTTGTTATCCTTTT 60.029 45.455 24.38 0.00 33.28 2.27
2127 4584 3.554129 GCCAAGCGGTTGTTATCCTTTTT 60.554 43.478 24.38 0.00 33.28 1.94
2128 4585 4.321378 GCCAAGCGGTTGTTATCCTTTTTA 60.321 41.667 24.38 0.00 33.28 1.52
2129 4586 5.774630 CCAAGCGGTTGTTATCCTTTTTAA 58.225 37.500 24.38 0.00 30.95 1.52
2130 4587 6.394809 CCAAGCGGTTGTTATCCTTTTTAAT 58.605 36.000 24.38 0.00 30.95 1.40
2131 4588 6.310224 CCAAGCGGTTGTTATCCTTTTTAATG 59.690 38.462 24.38 1.11 30.95 1.90
2132 4589 6.584185 AGCGGTTGTTATCCTTTTTAATGT 57.416 33.333 0.00 0.00 0.00 2.71
2133 4590 6.386654 AGCGGTTGTTATCCTTTTTAATGTG 58.613 36.000 0.00 0.00 0.00 3.21
2134 4591 5.575218 GCGGTTGTTATCCTTTTTAATGTGG 59.425 40.000 0.00 0.00 0.00 4.17
2135 4592 6.570764 GCGGTTGTTATCCTTTTTAATGTGGA 60.571 38.462 0.00 0.00 0.00 4.02
2136 4593 7.371936 CGGTTGTTATCCTTTTTAATGTGGAA 58.628 34.615 0.00 0.00 31.87 3.53
2137 4594 7.540745 CGGTTGTTATCCTTTTTAATGTGGAAG 59.459 37.037 0.00 0.00 31.87 3.46
2138 4595 7.330946 GGTTGTTATCCTTTTTAATGTGGAAGC 59.669 37.037 0.00 0.00 31.87 3.86
2139 4596 6.930731 TGTTATCCTTTTTAATGTGGAAGCC 58.069 36.000 0.00 0.00 31.87 4.35
2140 4597 6.495181 TGTTATCCTTTTTAATGTGGAAGCCA 59.505 34.615 0.00 0.00 31.87 4.75
2141 4598 7.180051 TGTTATCCTTTTTAATGTGGAAGCCAT 59.820 33.333 0.00 0.00 35.28 4.40
2142 4599 5.404466 TCCTTTTTAATGTGGAAGCCATG 57.596 39.130 0.00 0.00 35.28 3.66
2143 4600 5.083122 TCCTTTTTAATGTGGAAGCCATGA 58.917 37.500 0.00 0.00 35.28 3.07
2144 4601 5.541868 TCCTTTTTAATGTGGAAGCCATGAA 59.458 36.000 0.00 0.00 35.28 2.57
2145 4602 5.639082 CCTTTTTAATGTGGAAGCCATGAAC 59.361 40.000 0.00 0.00 35.28 3.18
2146 4603 4.433186 TTTAATGTGGAAGCCATGAACG 57.567 40.909 0.00 0.00 35.28 3.95
2147 4604 1.176527 AATGTGGAAGCCATGAACGG 58.823 50.000 0.00 0.00 35.28 4.44
2148 4605 0.680921 ATGTGGAAGCCATGAACGGG 60.681 55.000 0.00 0.00 35.28 5.28
2149 4606 1.303317 GTGGAAGCCATGAACGGGT 60.303 57.895 0.00 0.00 38.81 5.28
2150 4607 0.035820 GTGGAAGCCATGAACGGGTA 60.036 55.000 0.00 0.00 35.11 3.69
2151 4608 0.693622 TGGAAGCCATGAACGGGTAA 59.306 50.000 0.00 0.00 35.11 2.85
2152 4609 1.339631 TGGAAGCCATGAACGGGTAAG 60.340 52.381 0.00 0.00 35.11 2.34
2153 4610 1.339727 GGAAGCCATGAACGGGTAAGT 60.340 52.381 0.00 0.00 35.11 2.24
2154 4611 2.007608 GAAGCCATGAACGGGTAAGTC 58.992 52.381 0.00 0.00 35.11 3.01
2155 4612 0.252197 AGCCATGAACGGGTAAGTCC 59.748 55.000 0.00 0.00 34.17 3.85
2156 4613 0.035820 GCCATGAACGGGTAAGTCCA 60.036 55.000 0.00 0.00 38.11 4.02
2157 4614 1.734163 CCATGAACGGGTAAGTCCAC 58.266 55.000 0.00 0.00 38.11 4.02
2158 4615 1.002659 CCATGAACGGGTAAGTCCACA 59.997 52.381 0.00 0.00 38.11 4.17
2159 4616 2.073816 CATGAACGGGTAAGTCCACAC 58.926 52.381 0.00 0.00 38.11 3.82
2160 4617 1.416243 TGAACGGGTAAGTCCACACT 58.584 50.000 0.00 0.00 38.11 3.55
2161 4618 1.764134 TGAACGGGTAAGTCCACACTT 59.236 47.619 0.00 0.00 45.39 3.16
2162 4619 2.171027 TGAACGGGTAAGTCCACACTTT 59.829 45.455 0.00 0.00 40.16 2.66
2163 4620 2.538512 ACGGGTAAGTCCACACTTTC 57.461 50.000 0.00 0.00 40.16 2.62
2164 4621 1.764134 ACGGGTAAGTCCACACTTTCA 59.236 47.619 0.00 0.00 40.16 2.69
2165 4622 2.140717 CGGGTAAGTCCACACTTTCAC 58.859 52.381 0.00 0.00 40.16 3.18
2166 4623 2.484065 CGGGTAAGTCCACACTTTCACA 60.484 50.000 0.00 0.00 40.16 3.58
2167 4624 2.876550 GGGTAAGTCCACACTTTCACAC 59.123 50.000 0.00 0.00 40.16 3.82
2168 4625 2.876550 GGTAAGTCCACACTTTCACACC 59.123 50.000 0.00 0.00 40.16 4.16
2169 4626 2.052782 AAGTCCACACTTTCACACCC 57.947 50.000 0.00 0.00 40.16 4.61
2170 4627 0.179056 AGTCCACACTTTCACACCCG 60.179 55.000 0.00 0.00 0.00 5.28
2171 4628 1.147376 TCCACACTTTCACACCCGG 59.853 57.895 0.00 0.00 0.00 5.73
2172 4629 1.153046 CCACACTTTCACACCCGGT 60.153 57.895 0.00 0.00 0.00 5.28
2181 4638 3.758172 ACACCCGGTGACATTTGC 58.242 55.556 24.80 0.00 36.96 3.68
2182 4639 1.150536 ACACCCGGTGACATTTGCT 59.849 52.632 24.80 0.00 36.96 3.91
2183 4640 0.889186 ACACCCGGTGACATTTGCTC 60.889 55.000 24.80 0.00 36.96 4.26
2184 4641 1.303317 ACCCGGTGACATTTGCTCC 60.303 57.895 0.00 0.00 0.00 4.70
2185 4642 2.046285 CCCGGTGACATTTGCTCCC 61.046 63.158 0.00 0.00 0.00 4.30
2186 4643 1.002134 CCGGTGACATTTGCTCCCT 60.002 57.895 0.00 0.00 0.00 4.20
2187 4644 1.026718 CCGGTGACATTTGCTCCCTC 61.027 60.000 0.00 0.00 0.00 4.30
2188 4645 0.321564 CGGTGACATTTGCTCCCTCA 60.322 55.000 0.00 0.00 0.00 3.86
2189 4646 1.881925 CGGTGACATTTGCTCCCTCAA 60.882 52.381 0.00 0.00 0.00 3.02
2190 4647 2.238521 GGTGACATTTGCTCCCTCAAA 58.761 47.619 0.00 0.00 39.87 2.69
2191 4648 2.627699 GGTGACATTTGCTCCCTCAAAA 59.372 45.455 0.00 0.00 39.13 2.44
2192 4649 3.552890 GGTGACATTTGCTCCCTCAAAAC 60.553 47.826 0.00 0.00 39.13 2.43
2193 4650 2.627699 TGACATTTGCTCCCTCAAAACC 59.372 45.455 0.00 0.00 39.13 3.27
2194 4651 1.970640 ACATTTGCTCCCTCAAAACCC 59.029 47.619 0.00 0.00 39.13 4.11
2195 4652 1.067635 CATTTGCTCCCTCAAAACCCG 60.068 52.381 0.00 0.00 39.13 5.28
2196 4653 0.183971 TTTGCTCCCTCAAAACCCGA 59.816 50.000 0.00 0.00 33.47 5.14
2197 4654 0.404040 TTGCTCCCTCAAAACCCGAT 59.596 50.000 0.00 0.00 0.00 4.18
2198 4655 1.281419 TGCTCCCTCAAAACCCGATA 58.719 50.000 0.00 0.00 0.00 2.92
2199 4656 1.065709 TGCTCCCTCAAAACCCGATAC 60.066 52.381 0.00 0.00 0.00 2.24
2200 4657 1.209747 GCTCCCTCAAAACCCGATACT 59.790 52.381 0.00 0.00 0.00 2.12
2201 4658 2.742204 GCTCCCTCAAAACCCGATACTC 60.742 54.545 0.00 0.00 0.00 2.59
2202 4659 2.500098 CTCCCTCAAAACCCGATACTCA 59.500 50.000 0.00 0.00 0.00 3.41
2203 4660 3.112263 TCCCTCAAAACCCGATACTCAT 58.888 45.455 0.00 0.00 0.00 2.90
2204 4661 3.134081 TCCCTCAAAACCCGATACTCATC 59.866 47.826 0.00 0.00 0.00 2.92
2205 4662 3.118408 CCCTCAAAACCCGATACTCATCA 60.118 47.826 0.00 0.00 0.00 3.07
2206 4663 4.513442 CCTCAAAACCCGATACTCATCAA 58.487 43.478 0.00 0.00 0.00 2.57
2207 4664 4.941263 CCTCAAAACCCGATACTCATCAAA 59.059 41.667 0.00 0.00 0.00 2.69
2208 4665 5.163754 CCTCAAAACCCGATACTCATCAAAC 60.164 44.000 0.00 0.00 0.00 2.93
2209 4666 5.556915 TCAAAACCCGATACTCATCAAACT 58.443 37.500 0.00 0.00 0.00 2.66
2210 4667 5.642063 TCAAAACCCGATACTCATCAAACTC 59.358 40.000 0.00 0.00 0.00 3.01
2211 4668 5.422214 AAACCCGATACTCATCAAACTCT 57.578 39.130 0.00 0.00 0.00 3.24
2212 4669 6.540438 AAACCCGATACTCATCAAACTCTA 57.460 37.500 0.00 0.00 0.00 2.43
2213 4670 5.776173 ACCCGATACTCATCAAACTCTAG 57.224 43.478 0.00 0.00 0.00 2.43
2214 4671 4.038162 ACCCGATACTCATCAAACTCTAGC 59.962 45.833 0.00 0.00 0.00 3.42
2215 4672 4.279671 CCCGATACTCATCAAACTCTAGCT 59.720 45.833 0.00 0.00 0.00 3.32
2216 4673 5.457140 CCGATACTCATCAAACTCTAGCTC 58.543 45.833 0.00 0.00 0.00 4.09
2217 4674 5.457140 CGATACTCATCAAACTCTAGCTCC 58.543 45.833 0.00 0.00 0.00 4.70
2218 4675 3.791973 ACTCATCAAACTCTAGCTCCG 57.208 47.619 0.00 0.00 0.00 4.63
2219 4676 3.093057 ACTCATCAAACTCTAGCTCCGT 58.907 45.455 0.00 0.00 0.00 4.69
2220 4677 3.129638 ACTCATCAAACTCTAGCTCCGTC 59.870 47.826 0.00 0.00 0.00 4.79
2221 4678 2.427453 TCATCAAACTCTAGCTCCGTCC 59.573 50.000 0.00 0.00 0.00 4.79
2222 4679 0.809385 TCAAACTCTAGCTCCGTCCG 59.191 55.000 0.00 0.00 0.00 4.79
2223 4680 0.802607 CAAACTCTAGCTCCGTCCGC 60.803 60.000 0.00 0.00 0.00 5.54
2224 4681 1.946475 AAACTCTAGCTCCGTCCGCC 61.946 60.000 0.00 0.00 0.00 6.13
2225 4682 2.517402 CTCTAGCTCCGTCCGCCT 60.517 66.667 0.00 0.00 0.00 5.52
2226 4683 2.516460 TCTAGCTCCGTCCGCCTC 60.516 66.667 0.00 0.00 0.00 4.70
2227 4684 3.597728 CTAGCTCCGTCCGCCTCC 61.598 72.222 0.00 0.00 0.00 4.30
2228 4685 4.124943 TAGCTCCGTCCGCCTCCT 62.125 66.667 0.00 0.00 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.664410 CACACACATACGAAAAACAGAACG 59.336 41.667 0.00 0.00 0.00 3.95
53 54 0.249120 TCGTCACCCTACAAGCCATG 59.751 55.000 0.00 0.00 0.00 3.66
108 109 0.841289 AAGTTCCAACCGTCCTTCCA 59.159 50.000 0.00 0.00 0.00 3.53
120 121 4.759693 ACGCTTTAATCATGTGAAGTTCCA 59.240 37.500 0.00 0.00 0.00 3.53
122 123 5.088739 CCACGCTTTAATCATGTGAAGTTC 58.911 41.667 0.00 0.00 32.39 3.01
192 193 4.105486 GTTGAACAGGAAAACTCACAAGC 58.895 43.478 0.00 0.00 0.00 4.01
193 194 5.123820 TCTGTTGAACAGGAAAACTCACAAG 59.876 40.000 23.65 0.00 45.94 3.16
195 196 4.394920 GTCTGTTGAACAGGAAAACTCACA 59.605 41.667 23.65 0.00 45.94 3.58
196 197 4.201920 GGTCTGTTGAACAGGAAAACTCAC 60.202 45.833 23.65 12.20 45.94 3.51
197 198 3.945285 GGTCTGTTGAACAGGAAAACTCA 59.055 43.478 23.65 0.31 45.94 3.41
199 200 4.236527 AGGTCTGTTGAACAGGAAAACT 57.763 40.909 23.65 10.97 45.94 2.66
201 202 5.130477 ACTCTAGGTCTGTTGAACAGGAAAA 59.870 40.000 23.65 2.93 45.94 2.29
218 219 6.287589 ACTCCACTTCAATGTAACTCTAGG 57.712 41.667 0.00 0.00 0.00 3.02
300 301 0.236449 GAAAAACCGTACACCGCCAG 59.764 55.000 0.00 0.00 34.38 4.85
301 302 1.497223 CGAAAAACCGTACACCGCCA 61.497 55.000 0.00 0.00 34.38 5.69
374 2306 9.683069 AAATTGTCATGTCTACATCTGTTTTTC 57.317 29.630 0.00 0.00 33.61 2.29
380 2339 6.892310 TCGAAATTGTCATGTCTACATCTG 57.108 37.500 0.00 0.00 33.61 2.90
421 2380 4.323485 CCAGGCACCAGTAGTTCAAGATAA 60.323 45.833 0.00 0.00 0.00 1.75
454 2413 7.719193 TCATGAGTACTGAGAAATGGACAAAAA 59.281 33.333 0.00 0.00 0.00 1.94
487 2446 9.851043 GCTAGTGTATCTCGTTTGAAAATAATC 57.149 33.333 0.00 0.00 0.00 1.75
522 2481 8.687824 GCTAGCAGCACTGATTTAAATTTTTA 57.312 30.769 10.63 0.00 41.89 1.52
564 2523 2.127271 TGCTTACCACATGGACCATG 57.873 50.000 29.36 29.36 46.18 3.66
565 2524 2.825532 GTTTGCTTACCACATGGACCAT 59.174 45.455 4.53 0.00 38.94 3.55
566 2525 2.158534 AGTTTGCTTACCACATGGACCA 60.159 45.455 4.53 0.00 38.94 4.02
567 2526 2.514803 AGTTTGCTTACCACATGGACC 58.485 47.619 4.53 0.00 38.94 4.46
568 2527 6.995511 TTATAGTTTGCTTACCACATGGAC 57.004 37.500 4.53 0.00 38.94 4.02
569 2528 8.410673 TTTTTATAGTTTGCTTACCACATGGA 57.589 30.769 4.53 0.00 38.94 3.41
647 2606 4.749245 GCAGCTGCTAGTTGTCTAAAAA 57.251 40.909 31.33 0.00 38.21 1.94
716 2675 4.404098 AACCCACGGGCGGCTTAG 62.404 66.667 9.56 3.37 39.32 2.18
742 2712 3.294038 TTTGGGTTTTTACCTGGTCGA 57.706 42.857 0.63 0.00 0.00 4.20
763 2733 2.837291 GCTTGGTGTTGGTGCCCA 60.837 61.111 0.00 0.00 0.00 5.36
849 2830 0.108329 CCAGGCCCCGTTATATAGCG 60.108 60.000 11.61 11.61 0.00 4.26
850 2831 0.392595 GCCAGGCCCCGTTATATAGC 60.393 60.000 0.00 0.00 0.00 2.97
851 2832 0.981183 TGCCAGGCCCCGTTATATAG 59.019 55.000 9.64 0.00 0.00 1.31
852 2833 1.280710 CATGCCAGGCCCCGTTATATA 59.719 52.381 9.64 0.00 0.00 0.86
853 2834 0.038166 CATGCCAGGCCCCGTTATAT 59.962 55.000 9.64 0.00 0.00 0.86
854 2835 1.454104 CATGCCAGGCCCCGTTATA 59.546 57.895 9.64 0.00 0.00 0.98
855 2836 2.195683 CATGCCAGGCCCCGTTAT 59.804 61.111 9.64 0.00 0.00 1.89
856 2837 4.813235 GCATGCCAGGCCCCGTTA 62.813 66.667 9.64 0.00 0.00 3.18
914 2922 0.324368 GGGAGGTGGGATTTTGGGTC 60.324 60.000 0.00 0.00 0.00 4.46
1038 3059 2.838225 TCCTCCTTCGCCCCGATC 60.838 66.667 0.00 0.00 35.23 3.69
1152 3173 2.922503 TTGAGGCACAGCGGGAGA 60.923 61.111 0.00 0.00 0.00 3.71
1235 3262 4.602340 TGGATCGGTAATAGAAGAAGCC 57.398 45.455 0.00 0.00 0.00 4.35
1264 3293 1.100510 CTGATTCCCTCCGTACGTCA 58.899 55.000 15.21 8.32 0.00 4.35
1396 3711 0.383949 GTTTTCCAGCGCTTCACCAA 59.616 50.000 7.50 0.00 0.00 3.67
1490 3851 5.755375 TCTTAATGAAGGAAGCGCATTAGAG 59.245 40.000 11.47 4.22 36.29 2.43
1492 3853 5.991328 TCTTAATGAAGGAAGCGCATTAG 57.009 39.130 11.47 0.00 36.29 1.73
1520 3899 4.509616 TGGTCCCATCAGTACGTTAATTG 58.490 43.478 0.00 0.00 0.00 2.32
1521 3900 4.829872 TGGTCCCATCAGTACGTTAATT 57.170 40.909 0.00 0.00 0.00 1.40
1642 4066 2.093106 TCAGCACAATACATGCATGCA 58.907 42.857 26.53 25.04 45.92 3.96
1643 4067 2.855660 TCAGCACAATACATGCATGC 57.144 45.000 26.53 11.82 45.92 4.06
1644 4068 4.287720 GTGATCAGCACAATACATGCATG 58.712 43.478 25.09 25.09 46.91 4.06
1645 4069 4.563337 GTGATCAGCACAATACATGCAT 57.437 40.909 0.00 0.00 46.91 3.96
1670 4101 4.545208 TTTGTGGCTGCTACTATGTACA 57.455 40.909 17.13 0.00 0.00 2.90
1672 4103 4.098807 TCGATTTGTGGCTGCTACTATGTA 59.901 41.667 17.13 0.00 0.00 2.29
1673 4104 3.118775 TCGATTTGTGGCTGCTACTATGT 60.119 43.478 17.13 2.16 0.00 2.29
1674 4105 3.246226 GTCGATTTGTGGCTGCTACTATG 59.754 47.826 17.13 3.70 0.00 2.23
1675 4106 3.458189 GTCGATTTGTGGCTGCTACTAT 58.542 45.455 17.13 10.29 0.00 2.12
1708 4139 2.990967 ATGCACACCGGCCAAAGG 60.991 61.111 0.00 0.00 0.00 3.11
1736 4179 2.730094 GGTTGCTGTGGCTTGTGG 59.270 61.111 0.00 0.00 39.59 4.17
1737 4180 2.332514 CGGTTGCTGTGGCTTGTG 59.667 61.111 0.00 0.00 39.59 3.33
1738 4181 2.906897 CCGGTTGCTGTGGCTTGT 60.907 61.111 0.00 0.00 39.59 3.16
1739 4182 4.347453 GCCGGTTGCTGTGGCTTG 62.347 66.667 1.90 0.00 45.40 4.01
1806 4263 2.199236 GAATTGGCCTTAGTCGTACGG 58.801 52.381 16.52 0.00 0.00 4.02
1814 4271 1.135402 GTGCGTTGGAATTGGCCTTAG 60.135 52.381 3.32 0.00 0.00 2.18
1818 4275 0.037419 ATTGTGCGTTGGAATTGGCC 60.037 50.000 0.00 0.00 0.00 5.36
1819 4276 1.349234 GATTGTGCGTTGGAATTGGC 58.651 50.000 0.00 0.00 0.00 4.52
1820 4277 1.404047 GGGATTGTGCGTTGGAATTGG 60.404 52.381 0.00 0.00 0.00 3.16
1821 4278 1.271934 TGGGATTGTGCGTTGGAATTG 59.728 47.619 0.00 0.00 0.00 2.32
1822 4279 1.626686 TGGGATTGTGCGTTGGAATT 58.373 45.000 0.00 0.00 0.00 2.17
1823 4280 1.750778 GATGGGATTGTGCGTTGGAAT 59.249 47.619 0.00 0.00 0.00 3.01
1824 4281 1.173043 GATGGGATTGTGCGTTGGAA 58.827 50.000 0.00 0.00 0.00 3.53
1825 4282 0.679640 GGATGGGATTGTGCGTTGGA 60.680 55.000 0.00 0.00 0.00 3.53
1826 4283 1.809207 GGATGGGATTGTGCGTTGG 59.191 57.895 0.00 0.00 0.00 3.77
1827 4284 1.429021 CGGATGGGATTGTGCGTTG 59.571 57.895 0.00 0.00 0.00 4.10
1828 4285 1.748879 CCGGATGGGATTGTGCGTT 60.749 57.895 0.00 0.00 38.47 4.84
1829 4286 2.124736 CCGGATGGGATTGTGCGT 60.125 61.111 0.00 0.00 38.47 5.24
1830 4287 3.585990 GCCGGATGGGATTGTGCG 61.586 66.667 5.05 0.00 38.47 5.34
1831 4288 3.219198 GGCCGGATGGGATTGTGC 61.219 66.667 5.05 0.00 38.47 4.57
1832 4289 2.519302 GGGCCGGATGGGATTGTG 60.519 66.667 5.05 0.00 38.47 3.33
1833 4290 4.189580 CGGGCCGGATGGGATTGT 62.190 66.667 20.56 0.00 38.47 2.71
1867 4324 0.653636 GTGCCGTCTGTTCGTTTGAA 59.346 50.000 0.00 0.00 0.00 2.69
1868 4325 1.484227 CGTGCCGTCTGTTCGTTTGA 61.484 55.000 0.00 0.00 0.00 2.69
1869 4326 1.083657 CGTGCCGTCTGTTCGTTTG 60.084 57.895 0.00 0.00 0.00 2.93
1870 4327 2.241880 CCGTGCCGTCTGTTCGTTT 61.242 57.895 0.00 0.00 0.00 3.60
1871 4328 2.660552 CCGTGCCGTCTGTTCGTT 60.661 61.111 0.00 0.00 0.00 3.85
1890 4347 4.570663 GATGGGGTCGAGCGTCGG 62.571 72.222 8.77 0.00 40.88 4.79
1891 4348 4.570663 GGATGGGGTCGAGCGTCG 62.571 72.222 8.77 1.67 42.10 5.12
1892 4349 1.389609 TAAGGATGGGGTCGAGCGTC 61.390 60.000 8.77 6.63 0.00 5.19
1893 4350 0.974010 TTAAGGATGGGGTCGAGCGT 60.974 55.000 8.77 0.00 0.00 5.07
1894 4351 0.393077 ATTAAGGATGGGGTCGAGCG 59.607 55.000 8.77 0.00 0.00 5.03
1895 4352 2.222027 CAATTAAGGATGGGGTCGAGC 58.778 52.381 5.93 5.93 0.00 5.03
1896 4353 3.467803 GACAATTAAGGATGGGGTCGAG 58.532 50.000 0.00 0.00 0.00 4.04
1897 4354 2.171870 GGACAATTAAGGATGGGGTCGA 59.828 50.000 0.00 0.00 0.00 4.20
1898 4355 2.092646 TGGACAATTAAGGATGGGGTCG 60.093 50.000 0.00 0.00 0.00 4.79
1899 4356 3.662759 TGGACAATTAAGGATGGGGTC 57.337 47.619 0.00 0.00 0.00 4.46
1900 4357 4.625225 AATGGACAATTAAGGATGGGGT 57.375 40.909 0.00 0.00 0.00 4.95
1901 4358 4.443315 GCAAATGGACAATTAAGGATGGGG 60.443 45.833 0.00 0.00 0.00 4.96
1902 4359 4.406649 AGCAAATGGACAATTAAGGATGGG 59.593 41.667 0.00 0.00 0.00 4.00
1903 4360 5.603170 AGCAAATGGACAATTAAGGATGG 57.397 39.130 0.00 0.00 0.00 3.51
1904 4361 7.373493 GGATAGCAAATGGACAATTAAGGATG 58.627 38.462 0.00 0.00 0.00 3.51
1905 4362 6.207417 CGGATAGCAAATGGACAATTAAGGAT 59.793 38.462 0.00 0.00 0.00 3.24
1906 4363 5.530915 CGGATAGCAAATGGACAATTAAGGA 59.469 40.000 0.00 0.00 0.00 3.36
1907 4364 5.278463 CCGGATAGCAAATGGACAATTAAGG 60.278 44.000 0.00 0.00 0.00 2.69
1908 4365 5.299279 ACCGGATAGCAAATGGACAATTAAG 59.701 40.000 9.46 0.00 0.00 1.85
1909 4366 5.197451 ACCGGATAGCAAATGGACAATTAA 58.803 37.500 9.46 0.00 0.00 1.40
1910 4367 4.787551 ACCGGATAGCAAATGGACAATTA 58.212 39.130 9.46 0.00 0.00 1.40
1911 4368 3.631250 ACCGGATAGCAAATGGACAATT 58.369 40.909 9.46 0.00 0.00 2.32
1912 4369 3.214328 GACCGGATAGCAAATGGACAAT 58.786 45.455 9.46 0.00 0.00 2.71
1913 4370 2.639065 GACCGGATAGCAAATGGACAA 58.361 47.619 9.46 0.00 0.00 3.18
1914 4371 1.134220 GGACCGGATAGCAAATGGACA 60.134 52.381 9.46 0.00 0.00 4.02
1915 4372 1.594331 GGACCGGATAGCAAATGGAC 58.406 55.000 9.46 0.00 0.00 4.02
1916 4373 0.105964 CGGACCGGATAGCAAATGGA 59.894 55.000 9.46 0.00 0.00 3.41
1917 4374 0.179056 ACGGACCGGATAGCAAATGG 60.179 55.000 20.00 0.00 0.00 3.16
1918 4375 1.217882 GACGGACCGGATAGCAAATG 58.782 55.000 20.00 0.00 0.00 2.32
1919 4376 0.106149 GGACGGACCGGATAGCAAAT 59.894 55.000 20.00 0.00 0.00 2.32
1920 4377 1.518774 GGACGGACCGGATAGCAAA 59.481 57.895 20.00 0.00 0.00 3.68
1921 4378 2.428925 GGGACGGACCGGATAGCAA 61.429 63.158 20.00 0.00 40.11 3.91
1922 4379 2.836360 GGGACGGACCGGATAGCA 60.836 66.667 20.00 0.00 40.11 3.49
1923 4380 1.755393 AATGGGACGGACCGGATAGC 61.755 60.000 20.00 1.70 40.11 2.97
1924 4381 0.756903 AAATGGGACGGACCGGATAG 59.243 55.000 20.00 0.00 40.11 2.08
1925 4382 1.205966 AAAATGGGACGGACCGGATA 58.794 50.000 20.00 1.64 40.11 2.59
1926 4383 0.330267 AAAAATGGGACGGACCGGAT 59.670 50.000 20.00 0.00 40.11 4.18
1927 4384 0.606944 CAAAAATGGGACGGACCGGA 60.607 55.000 20.00 0.00 40.11 5.14
1928 4385 0.606944 TCAAAAATGGGACGGACCGG 60.607 55.000 20.00 0.00 40.11 5.28
1929 4386 0.519961 GTCAAAAATGGGACGGACCG 59.480 55.000 13.61 13.61 40.11 4.79
1935 4392 7.115236 GGTGTAAATTTACGTCAAAAATGGGAC 59.885 37.037 20.51 9.91 36.45 4.46
1936 4393 7.014422 AGGTGTAAATTTACGTCAAAAATGGGA 59.986 33.333 20.51 0.00 36.45 4.37
1937 4394 7.115663 CAGGTGTAAATTTACGTCAAAAATGGG 59.884 37.037 20.51 0.83 36.45 4.00
1938 4395 7.863375 TCAGGTGTAAATTTACGTCAAAAATGG 59.137 33.333 20.51 5.08 36.45 3.16
1939 4396 8.789881 TCAGGTGTAAATTTACGTCAAAAATG 57.210 30.769 20.51 11.61 36.45 2.32
1940 4397 9.974980 AATCAGGTGTAAATTTACGTCAAAAAT 57.025 25.926 20.51 7.82 36.45 1.82
1941 4398 9.804758 AAATCAGGTGTAAATTTACGTCAAAAA 57.195 25.926 20.51 6.13 36.45 1.94
1943 4400 9.881529 GTAAATCAGGTGTAAATTTACGTCAAA 57.118 29.630 20.51 8.82 36.61 2.69
1949 4406 8.031848 TGGACGTAAATCAGGTGTAAATTTAC 57.968 34.615 19.44 19.44 40.21 2.01
1950 4407 8.095792 TCTGGACGTAAATCAGGTGTAAATTTA 58.904 33.333 0.00 0.00 0.00 1.40
1951 4408 6.938030 TCTGGACGTAAATCAGGTGTAAATTT 59.062 34.615 0.00 0.00 0.00 1.82
1952 4409 6.370718 GTCTGGACGTAAATCAGGTGTAAATT 59.629 38.462 0.00 0.00 0.00 1.82
1953 4410 5.873164 GTCTGGACGTAAATCAGGTGTAAAT 59.127 40.000 0.00 0.00 0.00 1.40
1954 4411 5.232463 GTCTGGACGTAAATCAGGTGTAAA 58.768 41.667 0.00 0.00 0.00 2.01
1955 4412 4.813027 GTCTGGACGTAAATCAGGTGTAA 58.187 43.478 0.00 0.00 0.00 2.41
1956 4413 4.445452 GTCTGGACGTAAATCAGGTGTA 57.555 45.455 0.00 0.00 0.00 2.90
1957 4414 3.314541 GTCTGGACGTAAATCAGGTGT 57.685 47.619 0.00 0.00 0.00 4.16
1971 4428 4.047059 GTTCGCCGTCCGTCTGGA 62.047 66.667 0.00 0.00 43.88 3.86
2015 4472 2.693250 TATCATGCGGGTTCGAGGCG 62.693 60.000 0.00 0.00 39.00 5.52
2016 4473 0.946221 CTATCATGCGGGTTCGAGGC 60.946 60.000 0.00 0.00 39.00 4.70
2017 4474 0.946221 GCTATCATGCGGGTTCGAGG 60.946 60.000 0.00 0.00 39.00 4.63
2018 4475 0.946221 GGCTATCATGCGGGTTCGAG 60.946 60.000 0.00 0.00 39.00 4.04
2019 4476 1.069090 GGCTATCATGCGGGTTCGA 59.931 57.895 0.00 0.00 39.00 3.71
2020 4477 2.310233 CGGCTATCATGCGGGTTCG 61.310 63.158 0.00 0.00 39.81 3.95
2021 4478 2.607892 GCGGCTATCATGCGGGTTC 61.608 63.158 0.00 0.00 34.48 3.62
2022 4479 2.591715 GCGGCTATCATGCGGGTT 60.592 61.111 0.00 0.00 34.48 4.11
2023 4480 4.626081 GGCGGCTATCATGCGGGT 62.626 66.667 0.00 0.00 34.48 5.28
2025 4482 4.624364 TGGGCGGCTATCATGCGG 62.624 66.667 9.56 0.00 36.54 5.69
2026 4483 3.349006 GTGGGCGGCTATCATGCG 61.349 66.667 9.56 0.00 0.00 4.73
2027 4484 2.111999 TAGGTGGGCGGCTATCATGC 62.112 60.000 8.63 0.00 0.00 4.06
2028 4485 0.320771 GTAGGTGGGCGGCTATCATG 60.321 60.000 8.63 0.00 0.00 3.07
2029 4486 1.481056 GGTAGGTGGGCGGCTATCAT 61.481 60.000 8.63 0.00 0.00 2.45
2030 4487 2.138179 GGTAGGTGGGCGGCTATCA 61.138 63.158 8.63 0.00 0.00 2.15
2031 4488 1.817911 GAGGTAGGTGGGCGGCTATC 61.818 65.000 9.56 2.13 0.00 2.08
2032 4489 1.837499 GAGGTAGGTGGGCGGCTAT 60.837 63.158 9.56 0.00 0.00 2.97
2033 4490 2.443390 GAGGTAGGTGGGCGGCTA 60.443 66.667 9.56 0.00 0.00 3.93
2037 4494 3.782443 GTGGGAGGTAGGTGGGCG 61.782 72.222 0.00 0.00 0.00 6.13
2038 4495 3.408853 GGTGGGAGGTAGGTGGGC 61.409 72.222 0.00 0.00 0.00 5.36
2039 4496 3.081409 CGGTGGGAGGTAGGTGGG 61.081 72.222 0.00 0.00 0.00 4.61
2040 4497 3.782443 GCGGTGGGAGGTAGGTGG 61.782 72.222 0.00 0.00 0.00 4.61
2041 4498 3.782443 GGCGGTGGGAGGTAGGTG 61.782 72.222 0.00 0.00 0.00 4.00
2048 4505 3.690685 TAAATGCGGGCGGTGGGAG 62.691 63.158 0.00 0.00 0.00 4.30
2049 4506 3.718395 TAAATGCGGGCGGTGGGA 61.718 61.111 0.00 0.00 0.00 4.37
2050 4507 3.514362 GTAAATGCGGGCGGTGGG 61.514 66.667 0.00 0.00 0.00 4.61
2051 4508 3.871574 CGTAAATGCGGGCGGTGG 61.872 66.667 0.00 0.00 0.00 4.61
2059 4516 2.573167 GCGTGTGCCGTAAATGCG 60.573 61.111 0.00 0.00 39.32 4.73
2060 4517 1.226018 GAGCGTGTGCCGTAAATGC 60.226 57.895 0.00 0.00 44.31 3.56
2061 4518 0.796312 AAGAGCGTGTGCCGTAAATG 59.204 50.000 0.00 0.00 44.31 2.32
2062 4519 1.463444 GAAAGAGCGTGTGCCGTAAAT 59.537 47.619 0.00 0.00 44.31 1.40
2063 4520 0.863144 GAAAGAGCGTGTGCCGTAAA 59.137 50.000 0.00 0.00 44.31 2.01
2064 4521 1.279527 CGAAAGAGCGTGTGCCGTAA 61.280 55.000 0.00 0.00 44.31 3.18
2065 4522 1.731613 CGAAAGAGCGTGTGCCGTA 60.732 57.895 0.00 0.00 44.31 4.02
2066 4523 3.036084 CGAAAGAGCGTGTGCCGT 61.036 61.111 0.00 0.00 44.31 5.68
2067 4524 2.733218 TCGAAAGAGCGTGTGCCG 60.733 61.111 0.00 0.00 44.31 5.69
2078 4535 0.391130 TTGCGAGGTGGGATCGAAAG 60.391 55.000 0.00 0.00 42.76 2.62
2079 4536 0.672401 GTTGCGAGGTGGGATCGAAA 60.672 55.000 0.00 0.00 42.76 3.46
2080 4537 1.079405 GTTGCGAGGTGGGATCGAA 60.079 57.895 0.00 0.00 42.76 3.71
2081 4538 2.577059 GTTGCGAGGTGGGATCGA 59.423 61.111 0.00 0.00 42.76 3.59
2082 4539 2.511600 GGTTGCGAGGTGGGATCG 60.512 66.667 0.00 0.00 43.00 3.69
2083 4540 1.745489 GTGGTTGCGAGGTGGGATC 60.745 63.158 0.00 0.00 0.00 3.36
2084 4541 2.351276 GTGGTTGCGAGGTGGGAT 59.649 61.111 0.00 0.00 0.00 3.85
2085 4542 3.948719 GGTGGTTGCGAGGTGGGA 61.949 66.667 0.00 0.00 0.00 4.37
2103 4560 1.427819 GATAACAACCGCTTGGCCG 59.572 57.895 0.00 0.00 35.53 6.13
2104 4561 0.679960 AGGATAACAACCGCTTGGCC 60.680 55.000 0.00 0.00 35.53 5.36
2105 4562 1.173913 AAGGATAACAACCGCTTGGC 58.826 50.000 0.00 0.00 35.53 4.52
2106 4563 3.934457 AAAAGGATAACAACCGCTTGG 57.066 42.857 0.00 0.00 39.35 3.61
2107 4564 6.866248 ACATTAAAAAGGATAACAACCGCTTG 59.134 34.615 0.00 0.00 0.00 4.01
2108 4565 6.866248 CACATTAAAAAGGATAACAACCGCTT 59.134 34.615 0.00 0.00 0.00 4.68
2109 4566 6.386654 CACATTAAAAAGGATAACAACCGCT 58.613 36.000 0.00 0.00 0.00 5.52
2110 4567 5.575218 CCACATTAAAAAGGATAACAACCGC 59.425 40.000 0.00 0.00 0.00 5.68
2111 4568 6.915349 TCCACATTAAAAAGGATAACAACCG 58.085 36.000 0.00 0.00 0.00 4.44
2112 4569 7.330946 GCTTCCACATTAAAAAGGATAACAACC 59.669 37.037 0.00 0.00 0.00 3.77
2113 4570 7.330946 GGCTTCCACATTAAAAAGGATAACAAC 59.669 37.037 0.00 0.00 0.00 3.32
2114 4571 7.015682 TGGCTTCCACATTAAAAAGGATAACAA 59.984 33.333 0.00 0.00 0.00 2.83
2115 4572 6.495181 TGGCTTCCACATTAAAAAGGATAACA 59.505 34.615 0.00 0.00 0.00 2.41
2116 4573 6.930731 TGGCTTCCACATTAAAAAGGATAAC 58.069 36.000 0.00 0.00 0.00 1.89
2117 4574 7.398618 TCATGGCTTCCACATTAAAAAGGATAA 59.601 33.333 0.00 0.00 35.80 1.75
2118 4575 6.894654 TCATGGCTTCCACATTAAAAAGGATA 59.105 34.615 0.00 0.00 35.80 2.59
2119 4576 5.721000 TCATGGCTTCCACATTAAAAAGGAT 59.279 36.000 0.00 0.00 35.80 3.24
2120 4577 5.083122 TCATGGCTTCCACATTAAAAAGGA 58.917 37.500 0.00 0.00 35.80 3.36
2121 4578 5.404466 TCATGGCTTCCACATTAAAAAGG 57.596 39.130 0.00 0.00 35.80 3.11
2122 4579 5.345741 CGTTCATGGCTTCCACATTAAAAAG 59.654 40.000 0.00 0.00 35.80 2.27
2123 4580 5.226396 CGTTCATGGCTTCCACATTAAAAA 58.774 37.500 0.00 0.00 35.80 1.94
2124 4581 4.321601 CCGTTCATGGCTTCCACATTAAAA 60.322 41.667 0.00 0.00 35.80 1.52
2125 4582 3.192422 CCGTTCATGGCTTCCACATTAAA 59.808 43.478 0.00 0.00 35.80 1.52
2126 4583 2.752354 CCGTTCATGGCTTCCACATTAA 59.248 45.455 0.00 0.00 35.80 1.40
2127 4584 2.364632 CCGTTCATGGCTTCCACATTA 58.635 47.619 0.00 0.00 35.80 1.90
2128 4585 1.176527 CCGTTCATGGCTTCCACATT 58.823 50.000 0.00 0.00 35.80 2.71
2129 4586 0.680921 CCCGTTCATGGCTTCCACAT 60.681 55.000 0.00 0.00 35.80 3.21
2130 4587 1.303236 CCCGTTCATGGCTTCCACA 60.303 57.895 0.00 0.00 35.80 4.17
2131 4588 0.035820 TACCCGTTCATGGCTTCCAC 60.036 55.000 0.00 0.00 35.80 4.02
2132 4589 0.693622 TTACCCGTTCATGGCTTCCA 59.306 50.000 0.00 0.00 38.19 3.53
2133 4590 1.339727 ACTTACCCGTTCATGGCTTCC 60.340 52.381 0.00 0.00 0.00 3.46
2134 4591 2.007608 GACTTACCCGTTCATGGCTTC 58.992 52.381 0.00 0.00 0.00 3.86
2135 4592 1.339727 GGACTTACCCGTTCATGGCTT 60.340 52.381 0.00 0.00 0.00 4.35
2136 4593 0.252197 GGACTTACCCGTTCATGGCT 59.748 55.000 0.00 0.00 0.00 4.75
2137 4594 0.035820 TGGACTTACCCGTTCATGGC 60.036 55.000 0.00 0.00 38.00 4.40
2138 4595 1.002659 TGTGGACTTACCCGTTCATGG 59.997 52.381 0.00 0.00 38.00 3.66
2139 4596 2.073816 GTGTGGACTTACCCGTTCATG 58.926 52.381 0.00 0.00 38.00 3.07
2140 4597 1.975680 AGTGTGGACTTACCCGTTCAT 59.024 47.619 0.00 0.00 38.00 2.57
2141 4598 1.416243 AGTGTGGACTTACCCGTTCA 58.584 50.000 0.00 0.00 38.00 3.18
2142 4599 2.538512 AAGTGTGGACTTACCCGTTC 57.461 50.000 0.00 0.00 40.85 3.95
2143 4600 2.171027 TGAAAGTGTGGACTTACCCGTT 59.829 45.455 0.00 0.00 41.87 4.44
2144 4601 1.764134 TGAAAGTGTGGACTTACCCGT 59.236 47.619 0.00 0.00 41.87 5.28
2145 4602 2.140717 GTGAAAGTGTGGACTTACCCG 58.859 52.381 0.00 0.00 41.87 5.28
2146 4603 2.876550 GTGTGAAAGTGTGGACTTACCC 59.123 50.000 0.00 0.00 41.87 3.69
2147 4604 2.876550 GGTGTGAAAGTGTGGACTTACC 59.123 50.000 0.00 0.00 41.87 2.85
2148 4605 2.876550 GGGTGTGAAAGTGTGGACTTAC 59.123 50.000 0.00 0.00 41.87 2.34
2149 4606 2.484065 CGGGTGTGAAAGTGTGGACTTA 60.484 50.000 0.00 0.00 41.87 2.24
2150 4607 1.745827 CGGGTGTGAAAGTGTGGACTT 60.746 52.381 0.00 0.00 44.79 3.01
2151 4608 0.179056 CGGGTGTGAAAGTGTGGACT 60.179 55.000 0.00 0.00 0.00 3.85
2152 4609 1.164041 CCGGGTGTGAAAGTGTGGAC 61.164 60.000 0.00 0.00 0.00 4.02
2153 4610 1.147376 CCGGGTGTGAAAGTGTGGA 59.853 57.895 0.00 0.00 0.00 4.02
2154 4611 1.153046 ACCGGGTGTGAAAGTGTGG 60.153 57.895 6.32 0.00 0.00 4.17
2155 4612 4.551729 ACCGGGTGTGAAAGTGTG 57.448 55.556 6.32 0.00 0.00 3.82
2163 4620 1.172180 AGCAAATGTCACCGGGTGTG 61.172 55.000 25.53 17.07 46.88 3.82
2164 4621 0.889186 GAGCAAATGTCACCGGGTGT 60.889 55.000 25.53 4.95 34.79 4.16
2165 4622 1.586154 GGAGCAAATGTCACCGGGTG 61.586 60.000 21.27 21.27 34.45 4.61
2166 4623 1.303317 GGAGCAAATGTCACCGGGT 60.303 57.895 6.32 0.00 0.00 5.28
2167 4624 2.046285 GGGAGCAAATGTCACCGGG 61.046 63.158 6.32 0.00 0.00 5.73
2168 4625 1.002134 AGGGAGCAAATGTCACCGG 60.002 57.895 0.00 0.00 0.00 5.28
2169 4626 0.321564 TGAGGGAGCAAATGTCACCG 60.322 55.000 0.00 0.00 0.00 4.94
2170 4627 1.909700 TTGAGGGAGCAAATGTCACC 58.090 50.000 0.00 0.00 0.00 4.02
2171 4628 3.552890 GGTTTTGAGGGAGCAAATGTCAC 60.553 47.826 0.00 0.00 37.57 3.67
2172 4629 2.627699 GGTTTTGAGGGAGCAAATGTCA 59.372 45.455 0.00 0.00 37.57 3.58
2173 4630 2.029020 GGGTTTTGAGGGAGCAAATGTC 60.029 50.000 0.00 0.00 37.57 3.06
2174 4631 1.970640 GGGTTTTGAGGGAGCAAATGT 59.029 47.619 0.00 0.00 37.57 2.71
2175 4632 1.067635 CGGGTTTTGAGGGAGCAAATG 60.068 52.381 0.00 0.00 37.57 2.32
2176 4633 1.203001 TCGGGTTTTGAGGGAGCAAAT 60.203 47.619 0.00 0.00 37.57 2.32
2177 4634 0.183971 TCGGGTTTTGAGGGAGCAAA 59.816 50.000 0.00 0.00 36.08 3.68
2178 4635 0.404040 ATCGGGTTTTGAGGGAGCAA 59.596 50.000 0.00 0.00 0.00 3.91
2179 4636 1.065709 GTATCGGGTTTTGAGGGAGCA 60.066 52.381 0.00 0.00 0.00 4.26
2180 4637 1.209747 AGTATCGGGTTTTGAGGGAGC 59.790 52.381 0.00 0.00 0.00 4.70
2181 4638 2.500098 TGAGTATCGGGTTTTGAGGGAG 59.500 50.000 0.00 0.00 38.61 4.30
2182 4639 2.542550 TGAGTATCGGGTTTTGAGGGA 58.457 47.619 0.00 0.00 38.61 4.20
2183 4640 3.118408 TGATGAGTATCGGGTTTTGAGGG 60.118 47.826 0.00 0.00 38.61 4.30
2184 4641 4.137116 TGATGAGTATCGGGTTTTGAGG 57.863 45.455 0.00 0.00 38.61 3.86
2185 4642 5.643777 AGTTTGATGAGTATCGGGTTTTGAG 59.356 40.000 0.00 0.00 38.61 3.02
2186 4643 5.556915 AGTTTGATGAGTATCGGGTTTTGA 58.443 37.500 0.00 0.00 38.61 2.69
2187 4644 5.643777 AGAGTTTGATGAGTATCGGGTTTTG 59.356 40.000 0.00 0.00 38.61 2.44
2188 4645 5.805728 AGAGTTTGATGAGTATCGGGTTTT 58.194 37.500 0.00 0.00 38.61 2.43
2189 4646 5.422214 AGAGTTTGATGAGTATCGGGTTT 57.578 39.130 0.00 0.00 38.61 3.27
2190 4647 5.452077 GCTAGAGTTTGATGAGTATCGGGTT 60.452 44.000 0.00 0.00 38.61 4.11
2191 4648 4.038162 GCTAGAGTTTGATGAGTATCGGGT 59.962 45.833 0.00 0.00 38.61 5.28
2192 4649 4.279671 AGCTAGAGTTTGATGAGTATCGGG 59.720 45.833 0.00 0.00 38.61 5.14
2193 4650 5.446143 AGCTAGAGTTTGATGAGTATCGG 57.554 43.478 0.00 0.00 38.61 4.18
2194 4651 5.457140 GGAGCTAGAGTTTGATGAGTATCG 58.543 45.833 0.00 0.00 38.61 2.92
2195 4652 5.009210 ACGGAGCTAGAGTTTGATGAGTATC 59.991 44.000 0.00 0.00 0.00 2.24
2196 4653 4.890581 ACGGAGCTAGAGTTTGATGAGTAT 59.109 41.667 0.00 0.00 0.00 2.12
2197 4654 4.270834 ACGGAGCTAGAGTTTGATGAGTA 58.729 43.478 0.00 0.00 0.00 2.59
2198 4655 3.093057 ACGGAGCTAGAGTTTGATGAGT 58.907 45.455 0.00 0.00 0.00 3.41
2199 4656 3.490078 GGACGGAGCTAGAGTTTGATGAG 60.490 52.174 0.00 0.00 0.00 2.90
2200 4657 2.427453 GGACGGAGCTAGAGTTTGATGA 59.573 50.000 0.00 0.00 0.00 2.92
2201 4658 2.796383 CGGACGGAGCTAGAGTTTGATG 60.796 54.545 0.00 0.00 0.00 3.07
2202 4659 1.405821 CGGACGGAGCTAGAGTTTGAT 59.594 52.381 0.00 0.00 0.00 2.57
2203 4660 0.809385 CGGACGGAGCTAGAGTTTGA 59.191 55.000 0.00 0.00 0.00 2.69
2204 4661 0.802607 GCGGACGGAGCTAGAGTTTG 60.803 60.000 0.00 0.00 0.00 2.93
2205 4662 1.511768 GCGGACGGAGCTAGAGTTT 59.488 57.895 0.00 0.00 0.00 2.66
2206 4663 2.416432 GGCGGACGGAGCTAGAGTT 61.416 63.158 0.00 0.00 34.52 3.01
2207 4664 2.829458 GGCGGACGGAGCTAGAGT 60.829 66.667 0.00 0.00 34.52 3.24
2208 4665 2.517402 AGGCGGACGGAGCTAGAG 60.517 66.667 0.00 0.00 34.52 2.43
2209 4666 2.516460 GAGGCGGACGGAGCTAGA 60.516 66.667 0.00 0.00 34.52 2.43
2210 4667 3.597728 GGAGGCGGACGGAGCTAG 61.598 72.222 0.00 0.00 34.52 3.42
2211 4668 4.124943 AGGAGGCGGACGGAGCTA 62.125 66.667 0.00 0.00 34.52 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.