Multiple sequence alignment - TraesCS2A01G423700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G423700 chr2A 100.000 3487 0 0 1 3487 678359744 678363230 0.000000e+00 6440.0
1 TraesCS2A01G423700 chr2B 92.460 2467 106 27 659 3100 636461217 636463628 0.000000e+00 3452.0
2 TraesCS2A01G423700 chr2B 92.453 159 10 2 1 157 636450567 636450725 3.500000e-55 226.0
3 TraesCS2A01G423700 chr2B 89.474 171 15 3 3120 3288 403702442 403702273 2.730000e-51 213.0
4 TraesCS2A01G423700 chr2B 92.079 101 6 2 546 644 636458968 636459068 1.300000e-29 141.0
5 TraesCS2A01G423700 chr2B 96.491 57 2 0 3431 3487 636463651 636463707 1.030000e-15 95.3
6 TraesCS2A01G423700 chr2D 97.125 1287 32 5 1477 2763 535097087 535098368 0.000000e+00 2167.0
7 TraesCS2A01G423700 chr2D 89.013 1256 64 25 244 1428 535095828 535097080 0.000000e+00 1487.0
8 TraesCS2A01G423700 chr2D 90.909 385 13 5 2716 3100 535098367 535098729 6.720000e-137 497.0
9 TraesCS2A01G423700 chr2D 94.634 205 10 1 5 209 535095489 535095692 2.020000e-82 316.0
10 TraesCS2A01G423700 chr2D 92.810 153 11 0 3127 3279 79056167 79056319 4.530000e-54 222.0
11 TraesCS2A01G423700 chr2D 92.982 57 4 0 3431 3487 535098750 535098806 2.230000e-12 84.2
12 TraesCS2A01G423700 chr4D 93.671 158 8 2 3124 3279 74079347 74079504 5.820000e-58 235.0
13 TraesCS2A01G423700 chr7D 93.333 150 10 0 3130 3279 34757015 34756866 4.530000e-54 222.0
14 TraesCS2A01G423700 chr7D 90.058 171 14 3 3126 3294 436459778 436459609 5.860000e-53 219.0
15 TraesCS2A01G423700 chr6D 91.824 159 12 1 3122 3279 392273068 392273226 1.630000e-53 220.0
16 TraesCS2A01G423700 chr6D 91.304 161 13 1 3120 3279 410398439 410398279 5.860000e-53 219.0
17 TraesCS2A01G423700 chr3B 91.772 158 13 0 3122 3279 396271874 396272031 1.630000e-53 220.0
18 TraesCS2A01G423700 chr3B 93.023 43 3 0 988 1030 642217911 642217869 2.910000e-06 63.9
19 TraesCS2A01G423700 chr3D 90.798 163 14 1 3119 3280 288550619 288550457 2.110000e-52 217.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G423700 chr2A 678359744 678363230 3486 False 6440.000000 6440 100.000000 1 3487 1 chr2A.!!$F1 3486
1 TraesCS2A01G423700 chr2B 636458968 636463707 4739 False 1229.433333 3452 93.676667 546 3487 3 chr2B.!!$F2 2941
2 TraesCS2A01G423700 chr2D 535095489 535098806 3317 False 910.240000 2167 92.932600 5 3487 5 chr2D.!!$F2 3482

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
466 605 0.179048 CAGCCGCATACCCTCATGAA 60.179 55.0 0.0 0.0 0.0 2.57 F
1773 4083 0.247736 CCACTAGAGGGCAGTGACAC 59.752 60.0 0.0 0.0 45.1 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2407 4717 1.185618 TACTGTCTCCAGCACCGCTT 61.186 55.0 0.0 0.0 42.81 4.68 R
3359 5724 0.106708 TCGCACATATCTTCTGCCCC 59.893 55.0 0.0 0.0 0.00 5.80 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 9.523168 ACCATAGTAAGGTTAATGCAAAGTTAA 57.477 29.630 0.00 0.00 35.33 2.01
139 140 8.545229 TTGAATTGCTTTGTTTCTCTTTTGAA 57.455 26.923 0.00 0.00 0.00 2.69
141 142 9.165035 TGAATTGCTTTGTTTCTCTTTTGAAAT 57.835 25.926 0.00 0.00 38.09 2.17
202 203 8.585471 ATCAAAAAGATGAATAGTGTCCACAT 57.415 30.769 0.00 0.00 35.06 3.21
209 210 9.739276 AAGATGAATAGTGTCCACATAGAAAAA 57.261 29.630 0.00 0.00 0.00 1.94
210 211 9.167311 AGATGAATAGTGTCCACATAGAAAAAC 57.833 33.333 0.00 0.00 0.00 2.43
211 212 8.862325 ATGAATAGTGTCCACATAGAAAAACA 57.138 30.769 0.00 0.00 0.00 2.83
212 213 8.322906 TGAATAGTGTCCACATAGAAAAACAG 57.677 34.615 0.00 0.00 0.00 3.16
213 214 7.936847 TGAATAGTGTCCACATAGAAAAACAGT 59.063 33.333 0.00 0.00 0.00 3.55
214 215 8.691661 AATAGTGTCCACATAGAAAAACAGTT 57.308 30.769 0.00 0.00 0.00 3.16
216 217 6.119536 AGTGTCCACATAGAAAAACAGTTCA 58.880 36.000 0.00 0.00 0.00 3.18
217 218 6.772716 AGTGTCCACATAGAAAAACAGTTCAT 59.227 34.615 0.00 0.00 0.00 2.57
218 219 7.936847 AGTGTCCACATAGAAAAACAGTTCATA 59.063 33.333 0.00 0.00 0.00 2.15
219 220 8.730680 GTGTCCACATAGAAAAACAGTTCATAT 58.269 33.333 0.00 0.00 0.00 1.78
221 222 9.774742 GTCCACATAGAAAAACAGTTCATATTC 57.225 33.333 0.00 0.00 0.00 1.75
222 223 8.956426 TCCACATAGAAAAACAGTTCATATTCC 58.044 33.333 0.00 0.00 0.00 3.01
223 224 8.739039 CCACATAGAAAAACAGTTCATATTCCA 58.261 33.333 0.00 0.00 0.00 3.53
230 231 9.271828 GAAAAACAGTTCATATTCCAATGGTTT 57.728 29.630 0.00 0.00 0.00 3.27
231 232 8.831715 AAAACAGTTCATATTCCAATGGTTTC 57.168 30.769 0.00 0.00 0.00 2.78
232 233 7.781324 AACAGTTCATATTCCAATGGTTTCT 57.219 32.000 0.00 0.00 0.00 2.52
233 234 7.396540 ACAGTTCATATTCCAATGGTTTCTC 57.603 36.000 0.00 0.00 0.00 2.87
234 235 6.378280 ACAGTTCATATTCCAATGGTTTCTCC 59.622 38.462 0.00 0.00 0.00 3.71
236 237 5.732331 TCATATTCCAATGGTTTCTCCCT 57.268 39.130 0.00 0.00 34.77 4.20
237 238 6.840090 TCATATTCCAATGGTTTCTCCCTA 57.160 37.500 0.00 0.00 34.77 3.53
238 239 7.406620 TCATATTCCAATGGTTTCTCCCTAT 57.593 36.000 0.00 0.00 34.77 2.57
239 240 7.825709 TCATATTCCAATGGTTTCTCCCTATT 58.174 34.615 0.00 0.00 34.77 1.73
240 241 7.725397 TCATATTCCAATGGTTTCTCCCTATTG 59.275 37.037 0.00 0.00 34.77 1.90
242 243 5.269554 TCCAATGGTTTCTCCCTATTGTT 57.730 39.130 0.00 0.00 34.77 2.83
343 468 7.316640 GGTATACGACCTCTCTAACTATACGA 58.683 42.308 0.00 0.00 45.89 3.43
361 486 3.067106 ACGACATCAAAACTTCGAGCAT 58.933 40.909 0.00 0.00 35.45 3.79
382 507 7.104939 AGCATGCACACAACCAAATTATTATT 58.895 30.769 21.98 0.00 0.00 1.40
383 508 7.607223 AGCATGCACACAACCAAATTATTATTT 59.393 29.630 21.98 0.00 34.29 1.40
404 543 9.894783 TTATTTAAAAACCGAAATGATCAACGA 57.105 25.926 17.43 1.21 0.00 3.85
408 547 6.489127 AAAACCGAAATGATCAACGACATA 57.511 33.333 17.43 0.00 0.00 2.29
420 559 4.637276 TCAACGACATACAACAATGACCT 58.363 39.130 0.00 0.00 0.00 3.85
421 560 5.060506 TCAACGACATACAACAATGACCTT 58.939 37.500 0.00 0.00 0.00 3.50
430 569 0.609131 ACAATGACCTTTGGCTCCGG 60.609 55.000 0.00 0.00 0.00 5.14
451 590 3.177600 TCGCAATCGAAAGCAGCC 58.822 55.556 12.14 0.00 42.44 4.85
458 597 1.160329 ATCGAAAGCAGCCGCATACC 61.160 55.000 0.00 0.00 42.27 2.73
466 605 0.179048 CAGCCGCATACCCTCATGAA 60.179 55.000 0.00 0.00 0.00 2.57
472 611 2.576615 GCATACCCTCATGAACCCTTC 58.423 52.381 0.00 0.00 0.00 3.46
492 631 1.478105 CATCGTCTCATGGTCCAGACA 59.522 52.381 11.55 1.70 39.29 3.41
510 649 2.979006 CATGAGTAATGTCACGCGAC 57.021 50.000 15.93 0.75 42.93 5.19
512 651 3.691498 CATGAGTAATGTCACGCGACTA 58.309 45.455 15.93 0.00 43.06 2.59
530 677 6.456315 CGCGACTAATAACCATGACATTTCAA 60.456 38.462 0.00 0.00 34.61 2.69
666 2952 4.329801 TGAGTCGTTTAGTTGCTATGCATG 59.670 41.667 10.16 0.26 38.76 4.06
703 2989 2.423577 CTACCAAACTTCGGGTCCAAG 58.576 52.381 0.00 0.00 38.60 3.61
742 3028 2.202987 GCCAGATGCCGACTCAGG 60.203 66.667 0.00 0.00 0.00 3.86
817 3103 1.729470 CGTCTCTCTCCCATCCCACG 61.729 65.000 0.00 0.00 0.00 4.94
915 3203 3.003173 AACCTAGGGCTCGCAGCA 61.003 61.111 14.81 0.00 44.75 4.41
943 3231 2.434359 AAGACAAGCCGCGGTAGC 60.434 61.111 28.70 12.90 40.74 3.58
972 3260 1.628340 TCAGCCGGGAGAGAAAAATCA 59.372 47.619 2.18 0.00 0.00 2.57
978 3266 2.103373 GGGAGAGAAAAATCAAGGGGC 58.897 52.381 0.00 0.00 0.00 5.80
979 3267 2.291865 GGGAGAGAAAAATCAAGGGGCT 60.292 50.000 0.00 0.00 0.00 5.19
1204 3508 4.452733 CCGCGGAGACCAGGAACC 62.453 72.222 24.07 0.00 0.00 3.62
1361 3665 1.995626 GGTGAGCAGGCCTTCCCTA 60.996 63.158 0.00 0.00 44.09 3.53
1366 3670 1.151679 GCAGGCCTTCCCTATTCCC 59.848 63.158 0.00 0.00 44.09 3.97
1368 3672 2.113351 GGCCTTCCCTATTCCCGC 59.887 66.667 0.00 0.00 0.00 6.13
1428 3737 9.733556 ATATTAGTGGTGTGTTTTGTCTGATTA 57.266 29.630 0.00 0.00 0.00 1.75
1454 3763 9.227777 AGTTATCTAAAAAGCTCGTTGGTAATT 57.772 29.630 0.00 0.00 0.00 1.40
1505 3814 1.092345 GCTCGGCAGTTCCAGGAATC 61.092 60.000 4.80 0.00 34.01 2.52
1511 3820 1.888512 GCAGTTCCAGGAATCAAAGCA 59.111 47.619 4.80 0.00 0.00 3.91
1578 3887 4.023707 AGTGCTCATAAAATGGCTATTCGC 60.024 41.667 0.00 0.00 38.13 4.70
1583 3892 2.869233 AAAATGGCTATTCGCGCAAT 57.131 40.000 8.75 9.20 40.44 3.56
1653 3962 5.220931 GGATGTGATAGGCATTTGTTCTGTC 60.221 44.000 0.00 0.00 0.00 3.51
1660 3969 2.094545 GGCATTTGTTCTGTCATCCCAC 60.095 50.000 0.00 0.00 0.00 4.61
1690 3999 8.996651 AGCCCTTTATTAACTGCTAATATGTT 57.003 30.769 0.00 0.00 33.40 2.71
1773 4083 0.247736 CCACTAGAGGGCAGTGACAC 59.752 60.000 0.00 0.00 45.10 3.67
1798 4108 2.425668 CAGTCCATCATCAGCAATTGCA 59.574 45.455 30.89 13.06 45.16 4.08
1863 4173 3.997021 CCGAGTATGATTCTGGTTATGCC 59.003 47.826 0.00 0.00 37.90 4.40
1947 4257 1.967779 TGCACTGTAGGCACACTCTTA 59.032 47.619 0.00 0.00 36.11 2.10
2372 4682 0.890683 CTTTCTGGGATGTGGTTGGC 59.109 55.000 0.00 0.00 0.00 4.52
2375 4685 2.282110 TGGGATGTGGTTGGCACG 60.282 61.111 0.00 0.00 0.00 5.34
2407 4717 2.819608 GCTCATGGACAAAGCTTTACCA 59.180 45.455 27.65 27.65 33.23 3.25
2450 4760 2.106683 GGAAGGTGACATTCCCGCG 61.107 63.158 17.60 0.00 40.37 6.46
2537 4847 4.986659 TCGGTAGTGAGTTTTGCTAGAAAC 59.013 41.667 0.00 0.00 39.28 2.78
2615 4925 8.007405 TGTATAATGTAGCTCAGCACTAGAAA 57.993 34.615 0.00 0.00 0.00 2.52
2696 5006 4.202441 AGGATATTACTGCCACTTGCTTG 58.798 43.478 0.00 0.00 42.00 4.01
2863 5220 0.259938 CTTAGGGAGCTGGGCCATTT 59.740 55.000 6.72 0.00 0.00 2.32
2864 5221 0.033208 TTAGGGAGCTGGGCCATTTG 60.033 55.000 6.72 0.00 0.00 2.32
2865 5222 0.918799 TAGGGAGCTGGGCCATTTGA 60.919 55.000 6.72 0.00 0.00 2.69
2866 5223 1.305213 GGGAGCTGGGCCATTTGAA 60.305 57.895 6.72 0.00 0.00 2.69
2868 5225 1.197812 GGAGCTGGGCCATTTGAATT 58.802 50.000 6.72 0.00 0.00 2.17
2869 5226 2.387757 GGAGCTGGGCCATTTGAATTA 58.612 47.619 6.72 0.00 0.00 1.40
2870 5227 2.967887 GGAGCTGGGCCATTTGAATTAT 59.032 45.455 6.72 0.00 0.00 1.28
2871 5228 3.243975 GGAGCTGGGCCATTTGAATTATG 60.244 47.826 6.72 0.00 0.00 1.90
2872 5229 3.638160 GAGCTGGGCCATTTGAATTATGA 59.362 43.478 6.72 0.00 0.00 2.15
2873 5230 4.032310 AGCTGGGCCATTTGAATTATGAA 58.968 39.130 6.72 0.00 0.00 2.57
2874 5231 4.100498 AGCTGGGCCATTTGAATTATGAAG 59.900 41.667 6.72 0.00 0.00 3.02
2875 5232 4.141869 GCTGGGCCATTTGAATTATGAAGT 60.142 41.667 6.72 0.00 0.00 3.01
2876 5233 5.068987 GCTGGGCCATTTGAATTATGAAGTA 59.931 40.000 6.72 0.00 0.00 2.24
2877 5234 6.239402 GCTGGGCCATTTGAATTATGAAGTAT 60.239 38.462 6.72 0.00 0.00 2.12
2878 5235 7.673641 TGGGCCATTTGAATTATGAAGTATT 57.326 32.000 0.00 0.00 0.00 1.89
2879 5236 7.499292 TGGGCCATTTGAATTATGAAGTATTG 58.501 34.615 0.00 0.00 0.00 1.90
2880 5237 7.125507 TGGGCCATTTGAATTATGAAGTATTGT 59.874 33.333 0.00 0.00 0.00 2.71
2881 5238 7.986889 GGGCCATTTGAATTATGAAGTATTGTT 59.013 33.333 4.39 0.00 0.00 2.83
2912 5269 6.495181 CCATGAACTGTAGATAGACCCTATGT 59.505 42.308 0.00 0.00 0.00 2.29
2979 5336 2.029838 ATCTTGACCATGCGGAGTTC 57.970 50.000 0.00 0.00 35.59 3.01
3029 5386 9.796120 TTAAACATTCAAAACTTTGACTACCAG 57.204 29.630 4.38 0.00 45.99 4.00
3115 5480 9.662545 AAAGAAACTTGTGTTCAAAACAAATTG 57.337 25.926 0.00 0.00 44.16 2.32
3116 5481 7.805700 AGAAACTTGTGTTCAAAACAAATTGG 58.194 30.769 0.00 0.00 44.16 3.16
3117 5482 6.493449 AACTTGTGTTCAAAACAAATTGGG 57.507 33.333 0.00 0.00 44.16 4.12
3118 5483 5.555966 ACTTGTGTTCAAAACAAATTGGGT 58.444 33.333 0.00 0.00 44.16 4.51
3119 5484 6.000840 ACTTGTGTTCAAAACAAATTGGGTT 58.999 32.000 0.00 0.00 44.16 4.11
3120 5485 6.488344 ACTTGTGTTCAAAACAAATTGGGTTT 59.512 30.769 0.00 0.00 44.16 3.27
3121 5486 6.800892 CTTGTGTTCAAAACAAATTGGGTTTG 59.199 34.615 16.07 16.07 44.16 2.93
3134 5499 8.716646 CAAATTGGGTTTGTAAATATTCCCTC 57.283 34.615 8.64 0.00 41.80 4.30
3135 5500 7.432148 AATTGGGTTTGTAAATATTCCCTCC 57.568 36.000 8.64 0.00 36.23 4.30
3136 5501 4.528920 TGGGTTTGTAAATATTCCCTCCG 58.471 43.478 8.64 0.00 36.23 4.63
3137 5502 4.018233 TGGGTTTGTAAATATTCCCTCCGT 60.018 41.667 8.64 0.00 36.23 4.69
3138 5503 4.951715 GGGTTTGTAAATATTCCCTCCGTT 59.048 41.667 1.26 0.00 32.89 4.44
3139 5504 5.066893 GGGTTTGTAAATATTCCCTCCGTTC 59.933 44.000 1.26 0.00 32.89 3.95
3140 5505 5.648960 GGTTTGTAAATATTCCCTCCGTTCA 59.351 40.000 0.00 0.00 0.00 3.18
3141 5506 6.403964 GGTTTGTAAATATTCCCTCCGTTCAC 60.404 42.308 0.00 0.00 0.00 3.18
3142 5507 5.423704 TGTAAATATTCCCTCCGTTCACA 57.576 39.130 0.00 0.00 0.00 3.58
3143 5508 5.806818 TGTAAATATTCCCTCCGTTCACAA 58.193 37.500 0.00 0.00 0.00 3.33
3144 5509 6.239396 TGTAAATATTCCCTCCGTTCACAAA 58.761 36.000 0.00 0.00 0.00 2.83
3145 5510 6.887545 TGTAAATATTCCCTCCGTTCACAAAT 59.112 34.615 0.00 0.00 0.00 2.32
3146 5511 8.047911 TGTAAATATTCCCTCCGTTCACAAATA 58.952 33.333 0.00 0.00 0.00 1.40
3147 5512 6.937436 AATATTCCCTCCGTTCACAAATAC 57.063 37.500 0.00 0.00 0.00 1.89
3148 5513 3.773418 TTCCCTCCGTTCACAAATACA 57.227 42.857 0.00 0.00 0.00 2.29
3149 5514 3.773418 TCCCTCCGTTCACAAATACAA 57.227 42.857 0.00 0.00 0.00 2.41
3150 5515 3.670625 TCCCTCCGTTCACAAATACAAG 58.329 45.455 0.00 0.00 0.00 3.16
3151 5516 3.325425 TCCCTCCGTTCACAAATACAAGA 59.675 43.478 0.00 0.00 0.00 3.02
3152 5517 4.019681 TCCCTCCGTTCACAAATACAAGAT 60.020 41.667 0.00 0.00 0.00 2.40
3153 5518 4.094887 CCCTCCGTTCACAAATACAAGATG 59.905 45.833 0.00 0.00 0.00 2.90
3154 5519 4.695455 CCTCCGTTCACAAATACAAGATGT 59.305 41.667 0.00 0.00 0.00 3.06
3155 5520 5.181245 CCTCCGTTCACAAATACAAGATGTT 59.819 40.000 0.00 0.00 0.00 2.71
3156 5521 6.236017 TCCGTTCACAAATACAAGATGTTC 57.764 37.500 0.00 0.00 0.00 3.18
3157 5522 5.995282 TCCGTTCACAAATACAAGATGTTCT 59.005 36.000 0.00 0.00 0.00 3.01
3158 5523 7.156000 TCCGTTCACAAATACAAGATGTTCTA 58.844 34.615 0.00 0.00 0.00 2.10
3159 5524 7.658167 TCCGTTCACAAATACAAGATGTTCTAA 59.342 33.333 0.00 0.00 0.00 2.10
3160 5525 7.744715 CCGTTCACAAATACAAGATGTTCTAAC 59.255 37.037 0.00 0.00 0.00 2.34
3161 5526 8.495949 CGTTCACAAATACAAGATGTTCTAACT 58.504 33.333 0.00 0.00 0.00 2.24
3186 5551 7.756395 TTTTTGTGAACCGGGTTTATATACA 57.244 32.000 14.69 11.30 0.00 2.29
3187 5552 6.740411 TTTGTGAACCGGGTTTATATACAC 57.260 37.500 14.69 15.59 0.00 2.90
3188 5553 5.417754 TGTGAACCGGGTTTATATACACA 57.582 39.130 19.83 19.83 34.24 3.72
3189 5554 5.177326 TGTGAACCGGGTTTATATACACAC 58.823 41.667 19.83 16.90 32.23 3.82
3190 5555 4.268405 GTGAACCGGGTTTATATACACACG 59.732 45.833 14.69 15.24 0.00 4.49
3191 5556 4.081752 TGAACCGGGTTTATATACACACGT 60.082 41.667 19.36 4.98 0.00 4.49
3192 5557 4.470334 ACCGGGTTTATATACACACGTT 57.530 40.909 19.36 5.51 0.00 3.99
3193 5558 4.831107 ACCGGGTTTATATACACACGTTT 58.169 39.130 19.36 6.18 0.00 3.60
3194 5559 5.244755 ACCGGGTTTATATACACACGTTTT 58.755 37.500 19.36 4.03 0.00 2.43
3195 5560 6.402222 ACCGGGTTTATATACACACGTTTTA 58.598 36.000 19.36 0.00 0.00 1.52
3196 5561 6.534793 ACCGGGTTTATATACACACGTTTTAG 59.465 38.462 19.36 8.56 0.00 1.85
3197 5562 6.534793 CCGGGTTTATATACACACGTTTTAGT 59.465 38.462 19.36 0.00 0.00 2.24
3198 5563 7.393327 CGGGTTTATATACACACGTTTTAGTG 58.607 38.462 14.20 2.47 46.83 2.74
3209 5574 5.658674 CACGTTTTAGTGTGTTTGTTCAC 57.341 39.130 0.00 0.00 37.35 3.18
3210 5575 5.147865 CACGTTTTAGTGTGTTTGTTCACA 58.852 37.500 0.00 0.00 44.54 3.58
3220 5585 5.932021 GTGTTTGTTCACACATTTCAGTC 57.068 39.130 0.00 0.00 45.57 3.51
3221 5586 4.798387 GTGTTTGTTCACACATTTCAGTCC 59.202 41.667 0.00 0.00 45.57 3.85
3222 5587 3.961477 TTGTTCACACATTTCAGTCCG 57.039 42.857 0.00 0.00 31.06 4.79
3223 5588 2.912771 TGTTCACACATTTCAGTCCGT 58.087 42.857 0.00 0.00 0.00 4.69
3224 5589 4.061357 TGTTCACACATTTCAGTCCGTA 57.939 40.909 0.00 0.00 0.00 4.02
3225 5590 4.637276 TGTTCACACATTTCAGTCCGTAT 58.363 39.130 0.00 0.00 0.00 3.06
3226 5591 4.450757 TGTTCACACATTTCAGTCCGTATG 59.549 41.667 0.00 0.00 0.00 2.39
3227 5592 4.265904 TCACACATTTCAGTCCGTATGT 57.734 40.909 0.00 0.00 0.00 2.29
3228 5593 5.394224 TCACACATTTCAGTCCGTATGTA 57.606 39.130 0.00 0.00 30.53 2.29
3229 5594 5.407502 TCACACATTTCAGTCCGTATGTAG 58.592 41.667 0.00 0.00 30.53 2.74
3230 5595 5.047590 TCACACATTTCAGTCCGTATGTAGT 60.048 40.000 0.00 0.00 30.53 2.73
3231 5596 5.288712 CACACATTTCAGTCCGTATGTAGTC 59.711 44.000 0.00 0.00 30.53 2.59
3232 5597 4.804139 CACATTTCAGTCCGTATGTAGTCC 59.196 45.833 0.00 0.00 30.53 3.85
3233 5598 4.464951 ACATTTCAGTCCGTATGTAGTCCA 59.535 41.667 0.00 0.00 29.93 4.02
3234 5599 5.128827 ACATTTCAGTCCGTATGTAGTCCAT 59.871 40.000 0.00 0.00 37.58 3.41
3235 5600 6.322969 ACATTTCAGTCCGTATGTAGTCCATA 59.677 38.462 0.00 0.00 34.86 2.74
3236 5601 6.971726 TTTCAGTCCGTATGTAGTCCATAT 57.028 37.500 0.00 0.00 38.29 1.78
3237 5602 6.971726 TTCAGTCCGTATGTAGTCCATATT 57.028 37.500 0.00 0.00 38.29 1.28
3238 5603 6.327279 TCAGTCCGTATGTAGTCCATATTG 57.673 41.667 0.00 0.00 38.29 1.90
3239 5604 6.066032 TCAGTCCGTATGTAGTCCATATTGA 58.934 40.000 0.00 0.00 38.29 2.57
3240 5605 6.548251 TCAGTCCGTATGTAGTCCATATTGAA 59.452 38.462 0.00 0.00 38.29 2.69
3241 5606 7.068962 TCAGTCCGTATGTAGTCCATATTGAAA 59.931 37.037 0.00 0.00 38.29 2.69
3242 5607 7.872993 CAGTCCGTATGTAGTCCATATTGAAAT 59.127 37.037 0.00 0.00 38.29 2.17
3243 5608 9.085645 AGTCCGTATGTAGTCCATATTGAAATA 57.914 33.333 0.00 0.00 38.29 1.40
3244 5609 9.871238 GTCCGTATGTAGTCCATATTGAAATAT 57.129 33.333 0.00 0.00 38.29 1.28
3246 5611 9.314321 CCGTATGTAGTCCATATTGAAATATCC 57.686 37.037 0.00 0.00 38.29 2.59
3247 5612 9.869757 CGTATGTAGTCCATATTGAAATATCCA 57.130 33.333 0.00 0.00 38.29 3.41
3269 5634 9.787532 ATCCAAAACATCTTATATTTGTGAACG 57.212 29.630 0.00 0.00 32.29 3.95
3270 5635 8.240682 TCCAAAACATCTTATATTTGTGAACGG 58.759 33.333 0.00 0.00 32.29 4.44
3271 5636 8.240682 CCAAAACATCTTATATTTGTGAACGGA 58.759 33.333 0.00 0.00 32.29 4.69
3272 5637 9.277565 CAAAACATCTTATATTTGTGAACGGAG 57.722 33.333 0.00 0.00 0.00 4.63
3273 5638 7.553881 AACATCTTATATTTGTGAACGGAGG 57.446 36.000 0.00 0.00 0.00 4.30
3274 5639 6.055588 ACATCTTATATTTGTGAACGGAGGG 58.944 40.000 0.00 0.00 0.00 4.30
3275 5640 5.943349 TCTTATATTTGTGAACGGAGGGA 57.057 39.130 0.00 0.00 0.00 4.20
3276 5641 5.914033 TCTTATATTTGTGAACGGAGGGAG 58.086 41.667 0.00 0.00 0.00 4.30
3277 5642 5.424252 TCTTATATTTGTGAACGGAGGGAGT 59.576 40.000 0.00 0.00 0.00 3.85
3278 5643 6.608405 TCTTATATTTGTGAACGGAGGGAGTA 59.392 38.462 0.00 0.00 0.00 2.59
3279 5644 5.888982 ATATTTGTGAACGGAGGGAGTAT 57.111 39.130 0.00 0.00 0.00 2.12
3280 5645 6.989155 ATATTTGTGAACGGAGGGAGTATA 57.011 37.500 0.00 0.00 0.00 1.47
3281 5646 4.460948 TTTGTGAACGGAGGGAGTATAC 57.539 45.455 0.00 0.00 0.00 1.47
3282 5647 3.377253 TGTGAACGGAGGGAGTATACT 57.623 47.619 4.68 4.68 0.00 2.12
3283 5648 3.021695 TGTGAACGGAGGGAGTATACTG 58.978 50.000 10.90 0.00 0.00 2.74
3284 5649 3.022406 GTGAACGGAGGGAGTATACTGT 58.978 50.000 10.90 0.00 0.00 3.55
3285 5650 4.202441 GTGAACGGAGGGAGTATACTGTA 58.798 47.826 10.90 0.00 0.00 2.74
3286 5651 4.641989 GTGAACGGAGGGAGTATACTGTAA 59.358 45.833 10.90 0.00 0.00 2.41
3287 5652 4.885907 TGAACGGAGGGAGTATACTGTAAG 59.114 45.833 10.90 0.00 42.29 2.34
3288 5653 4.785346 ACGGAGGGAGTATACTGTAAGA 57.215 45.455 10.90 0.00 37.43 2.10
3289 5654 5.121380 ACGGAGGGAGTATACTGTAAGAA 57.879 43.478 10.90 0.00 37.43 2.52
3290 5655 5.703310 ACGGAGGGAGTATACTGTAAGAAT 58.297 41.667 10.90 0.00 37.43 2.40
3291 5656 5.535406 ACGGAGGGAGTATACTGTAAGAATG 59.465 44.000 10.90 0.00 37.43 2.67
3292 5657 5.047943 CGGAGGGAGTATACTGTAAGAATGG 60.048 48.000 10.90 0.00 37.43 3.16
3293 5658 5.839606 GGAGGGAGTATACTGTAAGAATGGT 59.160 44.000 10.90 0.00 37.43 3.55
3294 5659 6.326843 GGAGGGAGTATACTGTAAGAATGGTT 59.673 42.308 10.90 0.00 37.43 3.67
3295 5660 7.508296 GGAGGGAGTATACTGTAAGAATGGTTA 59.492 40.741 10.90 0.00 37.43 2.85
3296 5661 8.480133 AGGGAGTATACTGTAAGAATGGTTAG 57.520 38.462 10.90 0.00 37.43 2.34
3297 5662 8.066247 AGGGAGTATACTGTAAGAATGGTTAGT 58.934 37.037 10.90 0.00 37.43 2.24
3298 5663 8.142551 GGGAGTATACTGTAAGAATGGTTAGTG 58.857 40.741 10.90 0.00 37.43 2.74
3299 5664 8.142551 GGAGTATACTGTAAGAATGGTTAGTGG 58.857 40.741 10.90 0.00 37.43 4.00
3300 5665 8.605325 AGTATACTGTAAGAATGGTTAGTGGT 57.395 34.615 4.10 0.00 37.43 4.16
3301 5666 9.705103 AGTATACTGTAAGAATGGTTAGTGGTA 57.295 33.333 4.10 0.00 37.43 3.25
3306 5671 9.582648 ACTGTAAGAATGGTTAGTGGTAAAATT 57.417 29.630 0.00 0.00 37.43 1.82
3316 5681 9.262358 TGGTTAGTGGTAAAATTAATGTTTTGC 57.738 29.630 0.00 0.00 34.31 3.68
3317 5682 9.262358 GGTTAGTGGTAAAATTAATGTTTTGCA 57.738 29.630 0.00 0.00 36.00 4.08
3321 5686 9.389755 AGTGGTAAAATTAATGTTTTGCAAACT 57.610 25.926 12.39 0.00 36.00 2.66
3322 5687 9.432077 GTGGTAAAATTAATGTTTTGCAAACTG 57.568 29.630 12.39 0.00 36.00 3.16
3323 5688 9.167311 TGGTAAAATTAATGTTTTGCAAACTGT 57.833 25.926 12.39 0.21 36.00 3.55
3331 5696 9.539825 TTAATGTTTTGCAAACTGTATTGATGT 57.460 25.926 12.39 0.00 31.84 3.06
3332 5697 7.642071 ATGTTTTGCAAACTGTATTGATGTC 57.358 32.000 12.39 0.00 31.84 3.06
3333 5698 5.982516 TGTTTTGCAAACTGTATTGATGTCC 59.017 36.000 12.39 0.00 31.84 4.02
3334 5699 5.781210 TTTGCAAACTGTATTGATGTCCA 57.219 34.783 8.05 0.00 31.84 4.02
3335 5700 5.781210 TTGCAAACTGTATTGATGTCCAA 57.219 34.783 0.00 0.00 39.41 3.53
3336 5701 5.781210 TGCAAACTGTATTGATGTCCAAA 57.219 34.783 6.82 0.00 38.43 3.28
3337 5702 6.154203 TGCAAACTGTATTGATGTCCAAAA 57.846 33.333 6.82 0.00 38.43 2.44
3338 5703 5.982516 TGCAAACTGTATTGATGTCCAAAAC 59.017 36.000 6.82 0.00 38.43 2.43
3339 5704 5.405269 GCAAACTGTATTGATGTCCAAAACC 59.595 40.000 6.82 0.00 38.43 3.27
3340 5705 6.511416 CAAACTGTATTGATGTCCAAAACCA 58.489 36.000 0.00 0.00 38.43 3.67
3341 5706 6.723298 AACTGTATTGATGTCCAAAACCAA 57.277 33.333 0.00 0.00 38.43 3.67
3342 5707 6.723298 ACTGTATTGATGTCCAAAACCAAA 57.277 33.333 0.00 0.00 38.43 3.28
3343 5708 7.118496 ACTGTATTGATGTCCAAAACCAAAA 57.882 32.000 0.00 0.00 38.43 2.44
3344 5709 6.983890 ACTGTATTGATGTCCAAAACCAAAAC 59.016 34.615 0.00 0.00 38.43 2.43
3345 5710 7.118496 TGTATTGATGTCCAAAACCAAAACT 57.882 32.000 0.00 0.00 38.43 2.66
3346 5711 7.560368 TGTATTGATGTCCAAAACCAAAACTT 58.440 30.769 0.00 0.00 38.43 2.66
3347 5712 8.043710 TGTATTGATGTCCAAAACCAAAACTTT 58.956 29.630 0.00 0.00 38.43 2.66
3348 5713 7.936496 ATTGATGTCCAAAACCAAAACTTTT 57.064 28.000 0.00 0.00 38.43 2.27
3349 5714 6.976636 TGATGTCCAAAACCAAAACTTTTC 57.023 33.333 0.00 0.00 0.00 2.29
3350 5715 6.706295 TGATGTCCAAAACCAAAACTTTTCT 58.294 32.000 0.00 0.00 0.00 2.52
3351 5716 7.841956 TGATGTCCAAAACCAAAACTTTTCTA 58.158 30.769 0.00 0.00 0.00 2.10
3352 5717 7.978975 TGATGTCCAAAACCAAAACTTTTCTAG 59.021 33.333 0.00 0.00 0.00 2.43
3353 5718 7.234661 TGTCCAAAACCAAAACTTTTCTAGT 57.765 32.000 0.00 0.00 39.32 2.57
3355 5720 7.600752 TGTCCAAAACCAAAACTTTTCTAGTTG 59.399 33.333 0.00 0.00 46.34 3.16
3356 5721 7.601130 GTCCAAAACCAAAACTTTTCTAGTTGT 59.399 33.333 0.00 0.00 46.34 3.32
3357 5722 8.804204 TCCAAAACCAAAACTTTTCTAGTTGTA 58.196 29.630 0.00 0.00 46.34 2.41
3358 5723 9.083080 CCAAAACCAAAACTTTTCTAGTTGTAG 57.917 33.333 0.00 0.00 46.34 2.74
3359 5724 9.083080 CAAAACCAAAACTTTTCTAGTTGTAGG 57.917 33.333 0.00 0.00 46.34 3.18
3360 5725 6.954487 ACCAAAACTTTTCTAGTTGTAGGG 57.046 37.500 0.00 0.00 46.34 3.53
3361 5726 5.831525 ACCAAAACTTTTCTAGTTGTAGGGG 59.168 40.000 0.00 0.00 46.34 4.79
3362 5727 5.243060 CCAAAACTTTTCTAGTTGTAGGGGG 59.757 44.000 0.00 0.00 46.34 5.40
3363 5728 3.715638 ACTTTTCTAGTTGTAGGGGGC 57.284 47.619 0.00 0.00 31.29 5.80
3364 5729 2.983898 ACTTTTCTAGTTGTAGGGGGCA 59.016 45.455 0.00 0.00 31.29 5.36
3365 5730 3.009143 ACTTTTCTAGTTGTAGGGGGCAG 59.991 47.826 0.00 0.00 31.29 4.85
3366 5731 2.634639 TTCTAGTTGTAGGGGGCAGA 57.365 50.000 0.00 0.00 0.00 4.26
3367 5732 2.634639 TCTAGTTGTAGGGGGCAGAA 57.365 50.000 0.00 0.00 0.00 3.02
3368 5733 2.467880 TCTAGTTGTAGGGGGCAGAAG 58.532 52.381 0.00 0.00 0.00 2.85
3369 5734 2.043939 TCTAGTTGTAGGGGGCAGAAGA 59.956 50.000 0.00 0.00 0.00 2.87
3370 5735 1.972588 AGTTGTAGGGGGCAGAAGAT 58.027 50.000 0.00 0.00 0.00 2.40
3371 5736 3.130734 AGTTGTAGGGGGCAGAAGATA 57.869 47.619 0.00 0.00 0.00 1.98
3372 5737 3.669949 AGTTGTAGGGGGCAGAAGATAT 58.330 45.455 0.00 0.00 0.00 1.63
3373 5738 3.392616 AGTTGTAGGGGGCAGAAGATATG 59.607 47.826 0.00 0.00 0.00 1.78
3374 5739 3.060479 TGTAGGGGGCAGAAGATATGT 57.940 47.619 0.00 0.00 0.00 2.29
3375 5740 2.705658 TGTAGGGGGCAGAAGATATGTG 59.294 50.000 0.00 0.00 0.00 3.21
3384 5749 5.914085 GCAGAAGATATGTGCGAGTTTAT 57.086 39.130 0.00 0.00 38.68 1.40
3385 5750 6.292389 GCAGAAGATATGTGCGAGTTTATT 57.708 37.500 0.00 0.00 38.68 1.40
3386 5751 6.132056 GCAGAAGATATGTGCGAGTTTATTG 58.868 40.000 0.00 0.00 38.68 1.90
3387 5752 6.018751 GCAGAAGATATGTGCGAGTTTATTGA 60.019 38.462 0.00 0.00 38.68 2.57
3388 5753 7.307632 GCAGAAGATATGTGCGAGTTTATTGAT 60.308 37.037 0.00 0.00 38.68 2.57
3389 5754 8.008279 CAGAAGATATGTGCGAGTTTATTGATG 58.992 37.037 0.00 0.00 0.00 3.07
3390 5755 7.712639 AGAAGATATGTGCGAGTTTATTGATGT 59.287 33.333 0.00 0.00 0.00 3.06
3391 5756 7.792374 AGATATGTGCGAGTTTATTGATGTT 57.208 32.000 0.00 0.00 0.00 2.71
3392 5757 8.213518 AGATATGTGCGAGTTTATTGATGTTT 57.786 30.769 0.00 0.00 0.00 2.83
3393 5758 8.677300 AGATATGTGCGAGTTTATTGATGTTTT 58.323 29.630 0.00 0.00 0.00 2.43
3394 5759 9.289303 GATATGTGCGAGTTTATTGATGTTTTT 57.711 29.630 0.00 0.00 0.00 1.94
3395 5760 6.984740 TGTGCGAGTTTATTGATGTTTTTC 57.015 33.333 0.00 0.00 0.00 2.29
3396 5761 5.918011 TGTGCGAGTTTATTGATGTTTTTCC 59.082 36.000 0.00 0.00 0.00 3.13
3397 5762 5.344933 GTGCGAGTTTATTGATGTTTTTCCC 59.655 40.000 0.00 0.00 0.00 3.97
3398 5763 4.862574 GCGAGTTTATTGATGTTTTTCCCC 59.137 41.667 0.00 0.00 0.00 4.81
3399 5764 5.407502 CGAGTTTATTGATGTTTTTCCCCC 58.592 41.667 0.00 0.00 0.00 5.40
3400 5765 5.185056 CGAGTTTATTGATGTTTTTCCCCCT 59.815 40.000 0.00 0.00 0.00 4.79
3401 5766 6.295067 CGAGTTTATTGATGTTTTTCCCCCTT 60.295 38.462 0.00 0.00 0.00 3.95
3402 5767 7.004555 AGTTTATTGATGTTTTTCCCCCTTC 57.995 36.000 0.00 0.00 0.00 3.46
3403 5768 5.652994 TTATTGATGTTTTTCCCCCTTCG 57.347 39.130 0.00 0.00 0.00 3.79
3404 5769 2.668144 TGATGTTTTTCCCCCTTCGT 57.332 45.000 0.00 0.00 0.00 3.85
3405 5770 2.952116 TGATGTTTTTCCCCCTTCGTT 58.048 42.857 0.00 0.00 0.00 3.85
3406 5771 3.301274 TGATGTTTTTCCCCCTTCGTTT 58.699 40.909 0.00 0.00 0.00 3.60
3407 5772 3.068873 TGATGTTTTTCCCCCTTCGTTTG 59.931 43.478 0.00 0.00 0.00 2.93
3408 5773 2.736347 TGTTTTTCCCCCTTCGTTTGA 58.264 42.857 0.00 0.00 0.00 2.69
3409 5774 2.427812 TGTTTTTCCCCCTTCGTTTGAC 59.572 45.455 0.00 0.00 0.00 3.18
3410 5775 1.694844 TTTTCCCCCTTCGTTTGACC 58.305 50.000 0.00 0.00 0.00 4.02
3411 5776 0.848053 TTTCCCCCTTCGTTTGACCT 59.152 50.000 0.00 0.00 0.00 3.85
3412 5777 0.848053 TTCCCCCTTCGTTTGACCTT 59.152 50.000 0.00 0.00 0.00 3.50
3413 5778 0.848053 TCCCCCTTCGTTTGACCTTT 59.152 50.000 0.00 0.00 0.00 3.11
3414 5779 1.215924 TCCCCCTTCGTTTGACCTTTT 59.784 47.619 0.00 0.00 0.00 2.27
3415 5780 2.442502 TCCCCCTTCGTTTGACCTTTTA 59.557 45.455 0.00 0.00 0.00 1.52
3416 5781 3.074836 TCCCCCTTCGTTTGACCTTTTAT 59.925 43.478 0.00 0.00 0.00 1.40
3417 5782 3.442625 CCCCCTTCGTTTGACCTTTTATC 59.557 47.826 0.00 0.00 0.00 1.75
3418 5783 4.076394 CCCCTTCGTTTGACCTTTTATCA 58.924 43.478 0.00 0.00 0.00 2.15
3419 5784 4.156008 CCCCTTCGTTTGACCTTTTATCAG 59.844 45.833 0.00 0.00 0.00 2.90
3420 5785 4.379499 CCCTTCGTTTGACCTTTTATCAGC 60.379 45.833 0.00 0.00 0.00 4.26
3421 5786 4.215399 CCTTCGTTTGACCTTTTATCAGCA 59.785 41.667 0.00 0.00 0.00 4.41
3422 5787 4.742438 TCGTTTGACCTTTTATCAGCAC 57.258 40.909 0.00 0.00 0.00 4.40
3423 5788 4.130857 TCGTTTGACCTTTTATCAGCACA 58.869 39.130 0.00 0.00 0.00 4.57
3424 5789 4.213270 TCGTTTGACCTTTTATCAGCACAG 59.787 41.667 0.00 0.00 0.00 3.66
3425 5790 4.229876 GTTTGACCTTTTATCAGCACAGC 58.770 43.478 0.00 0.00 0.00 4.40
3426 5791 2.436417 TGACCTTTTATCAGCACAGCC 58.564 47.619 0.00 0.00 0.00 4.85
3427 5792 2.224744 TGACCTTTTATCAGCACAGCCA 60.225 45.455 0.00 0.00 0.00 4.75
3428 5793 3.019564 GACCTTTTATCAGCACAGCCAT 58.980 45.455 0.00 0.00 0.00 4.40
3429 5794 3.434309 ACCTTTTATCAGCACAGCCATT 58.566 40.909 0.00 0.00 0.00 3.16
3432 5797 3.763097 TTTATCAGCACAGCCATTTCG 57.237 42.857 0.00 0.00 0.00 3.46
3447 5812 0.884704 TTTCGCCTGTCCTTCACTGC 60.885 55.000 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.862371 GTTCTTATGATTCTTGTGACTTCTCTA 57.138 33.333 0.00 0.00 0.00 2.43
2 3 7.604164 TGGTTCTTATGATTCTTGTGACTTCTC 59.396 37.037 0.00 0.00 0.00 2.87
4 5 7.672983 TGGTTCTTATGATTCTTGTGACTTC 57.327 36.000 0.00 0.00 0.00 3.01
5 6 9.388506 CTATGGTTCTTATGATTCTTGTGACTT 57.611 33.333 0.00 0.00 0.00 3.01
6 7 8.543774 ACTATGGTTCTTATGATTCTTGTGACT 58.456 33.333 0.00 0.00 0.00 3.41
7 8 8.723942 ACTATGGTTCTTATGATTCTTGTGAC 57.276 34.615 0.00 0.00 0.00 3.67
121 122 9.265938 GTTTGAATTTCAAAAGAGAAACAAAGC 57.734 29.630 22.57 5.60 46.53 3.51
160 161 9.835389 TCTTTTTGATTCAAAAGAAACATGGAT 57.165 25.926 20.48 0.00 42.91 3.41
183 184 9.739276 TTTTTCTATGTGGACACTATTCATCTT 57.261 29.630 3.91 0.00 0.00 2.40
185 186 8.946085 TGTTTTTCTATGTGGACACTATTCATC 58.054 33.333 3.91 0.00 0.00 2.92
202 203 9.308000 ACCATTGGAATATGAACTGTTTTTCTA 57.692 29.630 10.37 0.00 0.00 2.10
209 210 6.378280 GGAGAAACCATTGGAATATGAACTGT 59.622 38.462 10.37 0.00 38.79 3.55
210 211 6.183360 GGGAGAAACCATTGGAATATGAACTG 60.183 42.308 10.37 0.00 41.20 3.16
211 212 5.893824 GGGAGAAACCATTGGAATATGAACT 59.106 40.000 10.37 0.00 41.20 3.01
212 213 5.893824 AGGGAGAAACCATTGGAATATGAAC 59.106 40.000 10.37 0.00 41.20 3.18
213 214 6.091076 AGGGAGAAACCATTGGAATATGAA 57.909 37.500 10.37 0.00 41.20 2.57
214 215 5.732331 AGGGAGAAACCATTGGAATATGA 57.268 39.130 10.37 0.00 41.20 2.15
216 217 7.595488 ACAATAGGGAGAAACCATTGGAATAT 58.405 34.615 10.37 0.00 41.20 1.28
217 218 6.980577 ACAATAGGGAGAAACCATTGGAATA 58.019 36.000 10.37 0.00 41.20 1.75
218 219 5.842339 ACAATAGGGAGAAACCATTGGAAT 58.158 37.500 10.37 0.00 41.20 3.01
219 220 5.269554 ACAATAGGGAGAAACCATTGGAA 57.730 39.130 10.37 0.00 41.20 3.53
221 222 5.594317 CCTAACAATAGGGAGAAACCATTGG 59.406 44.000 0.00 0.00 44.39 3.16
222 223 6.699575 CCTAACAATAGGGAGAAACCATTG 57.300 41.667 0.00 0.00 44.39 2.82
284 390 3.224884 ACAAAAGGTGTCAAAACCACG 57.775 42.857 0.00 0.00 43.20 4.94
341 466 3.410850 CATGCTCGAAGTTTTGATGTCG 58.589 45.455 0.00 0.00 34.85 4.35
343 468 2.553602 TGCATGCTCGAAGTTTTGATGT 59.446 40.909 20.33 0.00 0.00 3.06
382 507 6.726230 TGTCGTTGATCATTTCGGTTTTTAA 58.274 32.000 0.00 0.00 0.00 1.52
383 508 6.301687 TGTCGTTGATCATTTCGGTTTTTA 57.698 33.333 0.00 0.00 0.00 1.52
386 511 5.410132 TGTATGTCGTTGATCATTTCGGTTT 59.590 36.000 0.00 0.00 0.00 3.27
389 514 5.163903 TGTTGTATGTCGTTGATCATTTCGG 60.164 40.000 0.00 0.00 0.00 4.30
391 516 7.962373 TCATTGTTGTATGTCGTTGATCATTTC 59.038 33.333 0.00 0.00 0.00 2.17
392 517 7.750458 GTCATTGTTGTATGTCGTTGATCATTT 59.250 33.333 0.00 0.00 0.00 2.32
402 541 4.722194 CCAAAGGTCATTGTTGTATGTCG 58.278 43.478 0.00 0.00 0.00 4.35
404 543 4.151883 AGCCAAAGGTCATTGTTGTATGT 58.848 39.130 0.00 0.00 0.00 2.29
408 547 1.963515 GGAGCCAAAGGTCATTGTTGT 59.036 47.619 0.00 0.00 42.52 3.32
451 590 0.469917 AGGGTTCATGAGGGTATGCG 59.530 55.000 0.00 0.00 0.00 4.73
466 605 1.482593 GACCATGAGACGATGAAGGGT 59.517 52.381 0.00 0.00 0.00 4.34
472 611 1.478105 TGTCTGGACCATGAGACGATG 59.522 52.381 0.00 0.00 41.37 3.84
542 689 1.016627 ATGTGTGTGTGTGTGTGCTC 58.983 50.000 0.00 0.00 0.00 4.26
552 701 4.943705 AGAACTGAACTGAAATGTGTGTGT 59.056 37.500 0.00 0.00 0.00 3.72
556 705 5.368145 TGCTAGAACTGAACTGAAATGTGT 58.632 37.500 0.00 0.00 0.00 3.72
648 823 4.598406 TGACATGCATAGCAACTAAACG 57.402 40.909 0.00 0.00 43.62 3.60
657 2943 1.202336 GCCCAGTTTGACATGCATAGC 60.202 52.381 0.00 0.00 0.00 2.97
662 2948 0.895100 TCAGGCCCAGTTTGACATGC 60.895 55.000 0.00 0.00 0.00 4.06
666 2952 0.324943 TAGCTCAGGCCCAGTTTGAC 59.675 55.000 0.00 0.00 39.73 3.18
703 2989 0.034896 TTCTTCCGAGACAAGTGGCC 59.965 55.000 0.00 0.00 0.00 5.36
765 3051 5.114423 CGTTACACTGAATGCGGTTAAAAAC 59.886 40.000 0.00 0.00 0.00 2.43
915 3203 1.003003 GGCTTGTCTTCTTCTCCTGCT 59.997 52.381 0.00 0.00 0.00 4.24
943 3231 2.152297 CTCCCGGCTGATCTCGATGG 62.152 65.000 0.00 0.00 0.00 3.51
972 3260 1.946475 GCTCTCGTTCGTAGCCCCTT 61.946 60.000 9.70 0.00 0.00 3.95
978 3266 1.795889 GCTTCCTGCTCTCGTTCGTAG 60.796 57.143 0.00 0.00 38.95 3.51
979 3267 0.170561 GCTTCCTGCTCTCGTTCGTA 59.829 55.000 0.00 0.00 38.95 3.43
1126 3430 4.410400 CGGGAGGTTGAGGTGGGC 62.410 72.222 0.00 0.00 0.00 5.36
1361 3665 3.078837 ACAAAAATAGTCACGCGGGAAT 58.921 40.909 18.07 18.07 0.00 3.01
1366 3670 3.806316 AGGAACAAAAATAGTCACGCG 57.194 42.857 3.53 3.53 0.00 6.01
1408 3717 5.751243 ACTAATCAGACAAAACACACCAC 57.249 39.130 0.00 0.00 0.00 4.16
1428 3737 8.788325 ATTACCAACGAGCTTTTTAGATAACT 57.212 30.769 0.00 0.00 0.00 2.24
1441 3750 4.439057 TCCATGACTAATTACCAACGAGC 58.561 43.478 0.00 0.00 0.00 5.03
1454 3763 7.194112 TGGATGTAAGATGTTTCCATGACTA 57.806 36.000 0.00 0.00 31.67 2.59
1505 3814 7.063780 ACAATTTCAGTTCAAGTTTCTGCTTTG 59.936 33.333 0.00 0.00 0.00 2.77
1511 3820 7.703621 CACATCACAATTTCAGTTCAAGTTTCT 59.296 33.333 0.00 0.00 0.00 2.52
1578 3887 5.853282 GTGGCAAGCTCTATTAATTATTGCG 59.147 40.000 10.13 0.00 41.78 4.85
1583 3892 7.598869 CGTATGAGTGGCAAGCTCTATTAATTA 59.401 37.037 6.66 0.00 34.30 1.40
1624 3933 4.141088 ACAAATGCCTATCACATCCAGGAT 60.141 41.667 0.00 0.00 0.00 3.24
1653 3962 2.459555 AAAGGGCTAATGGTGGGATG 57.540 50.000 0.00 0.00 0.00 3.51
1660 3969 7.817418 TTAGCAGTTAATAAAGGGCTAATGG 57.183 36.000 0.00 0.00 38.49 3.16
1708 4017 7.177216 TGTTAAGCCAGTTCATCAATTGATTCT 59.823 33.333 18.41 13.44 33.34 2.40
1773 4083 2.685850 TGCTGATGATGGACTGTCAG 57.314 50.000 10.38 0.00 40.71 3.51
1850 4160 3.264193 TCAGTGTCAGGCATAACCAGAAT 59.736 43.478 0.00 0.00 43.14 2.40
1863 4173 2.469274 AGCATTCCTGTCAGTGTCAG 57.531 50.000 10.07 10.07 0.00 3.51
2372 4682 2.969238 GAGCATCCATCGCCCGTG 60.969 66.667 0.00 0.00 0.00 4.94
2375 4685 1.970114 CCATGAGCATCCATCGCCC 60.970 63.158 0.00 0.00 0.00 6.13
2407 4717 1.185618 TACTGTCTCCAGCACCGCTT 61.186 55.000 0.00 0.00 42.81 4.68
2450 4760 2.212900 GACCTTCCATGCAAACGCCC 62.213 60.000 0.00 0.00 0.00 6.13
2454 4764 3.437049 GTGAGTAGACCTTCCATGCAAAC 59.563 47.826 0.00 0.00 0.00 2.93
2783 5139 5.062683 ACATCACAAATGTTCTTCGAGATCG 59.937 40.000 0.00 0.00 41.45 3.69
2863 5220 9.521841 TGGGTGTTAACAATACTTCATAATTCA 57.478 29.630 10.51 0.00 0.00 2.57
2866 5223 9.693739 TCATGGGTGTTAACAATACTTCATAAT 57.306 29.630 10.51 0.00 0.00 1.28
2868 5225 8.952278 GTTCATGGGTGTTAACAATACTTCATA 58.048 33.333 10.51 0.00 0.00 2.15
2869 5226 7.669722 AGTTCATGGGTGTTAACAATACTTCAT 59.330 33.333 10.51 5.51 0.00 2.57
2870 5227 7.001674 AGTTCATGGGTGTTAACAATACTTCA 58.998 34.615 10.51 3.44 0.00 3.02
2871 5228 7.040686 ACAGTTCATGGGTGTTAACAATACTTC 60.041 37.037 10.51 0.00 0.00 3.01
2872 5229 6.775629 ACAGTTCATGGGTGTTAACAATACTT 59.224 34.615 10.51 0.00 0.00 2.24
2873 5230 6.303839 ACAGTTCATGGGTGTTAACAATACT 58.696 36.000 10.51 0.00 0.00 2.12
2874 5231 6.569179 ACAGTTCATGGGTGTTAACAATAC 57.431 37.500 10.51 4.26 0.00 1.89
2875 5232 7.681679 TCTACAGTTCATGGGTGTTAACAATA 58.318 34.615 10.51 0.00 0.00 1.90
2876 5233 6.539173 TCTACAGTTCATGGGTGTTAACAAT 58.461 36.000 10.51 0.00 0.00 2.71
2877 5234 5.931294 TCTACAGTTCATGGGTGTTAACAA 58.069 37.500 10.51 0.00 0.00 2.83
2878 5235 5.554437 TCTACAGTTCATGGGTGTTAACA 57.446 39.130 3.59 3.59 0.00 2.41
2879 5236 7.491696 GTCTATCTACAGTTCATGGGTGTTAAC 59.508 40.741 0.00 0.00 0.00 2.01
2880 5237 7.364408 GGTCTATCTACAGTTCATGGGTGTTAA 60.364 40.741 0.00 0.00 0.00 2.01
2881 5238 6.097839 GGTCTATCTACAGTTCATGGGTGTTA 59.902 42.308 0.00 0.00 0.00 2.41
2882 5239 5.104900 GGTCTATCTACAGTTCATGGGTGTT 60.105 44.000 0.00 0.00 0.00 3.32
2883 5240 4.406003 GGTCTATCTACAGTTCATGGGTGT 59.594 45.833 0.00 0.00 0.00 4.16
2884 5241 4.202264 GGGTCTATCTACAGTTCATGGGTG 60.202 50.000 0.00 0.00 0.00 4.61
2885 5242 3.967987 GGGTCTATCTACAGTTCATGGGT 59.032 47.826 0.00 0.00 0.00 4.51
2886 5243 4.227197 AGGGTCTATCTACAGTTCATGGG 58.773 47.826 0.00 0.00 0.00 4.00
2887 5244 6.495181 ACATAGGGTCTATCTACAGTTCATGG 59.505 42.308 0.00 0.00 0.00 3.66
2888 5245 7.231519 TCACATAGGGTCTATCTACAGTTCATG 59.768 40.741 0.00 0.00 0.00 3.07
2912 5269 5.181009 CAACTCTCAGTTAATGGCATCTCA 58.819 41.667 0.00 0.00 36.03 3.27
2979 5336 1.475751 GGCCCTATGACAGACCATGTG 60.476 57.143 0.00 0.00 44.17 3.21
3060 5417 6.064060 AGAAAATTGACACATGACTCTCCAA 58.936 36.000 0.00 0.00 0.00 3.53
3095 5452 5.555966 ACCCAATTTGTTTTGAACACAAGT 58.444 33.333 0.00 0.00 41.97 3.16
3096 5453 6.493449 AACCCAATTTGTTTTGAACACAAG 57.507 33.333 0.00 0.00 41.97 3.16
3098 5455 6.246420 CAAACCCAATTTGTTTTGAACACA 57.754 33.333 12.26 0.00 42.46 3.72
3113 5478 4.951094 CGGAGGGAATATTTACAAACCCAA 59.049 41.667 9.64 0.00 39.73 4.12
3114 5479 4.018233 ACGGAGGGAATATTTACAAACCCA 60.018 41.667 9.64 0.00 39.73 4.51
3115 5480 4.529897 ACGGAGGGAATATTTACAAACCC 58.470 43.478 0.00 0.00 37.79 4.11
3116 5481 5.648960 TGAACGGAGGGAATATTTACAAACC 59.351 40.000 0.00 0.00 0.00 3.27
3117 5482 6.149807 TGTGAACGGAGGGAATATTTACAAAC 59.850 38.462 0.00 0.00 0.00 2.93
3118 5483 6.239396 TGTGAACGGAGGGAATATTTACAAA 58.761 36.000 0.00 0.00 0.00 2.83
3119 5484 5.806818 TGTGAACGGAGGGAATATTTACAA 58.193 37.500 0.00 0.00 0.00 2.41
3120 5485 5.423704 TGTGAACGGAGGGAATATTTACA 57.576 39.130 0.00 0.00 0.00 2.41
3121 5486 6.746745 TTTGTGAACGGAGGGAATATTTAC 57.253 37.500 0.00 0.00 0.00 2.01
3122 5487 8.047911 TGTATTTGTGAACGGAGGGAATATTTA 58.952 33.333 0.00 0.00 0.00 1.40
3123 5488 6.887545 TGTATTTGTGAACGGAGGGAATATTT 59.112 34.615 0.00 0.00 0.00 1.40
3124 5489 6.419791 TGTATTTGTGAACGGAGGGAATATT 58.580 36.000 0.00 0.00 0.00 1.28
3125 5490 5.996644 TGTATTTGTGAACGGAGGGAATAT 58.003 37.500 0.00 0.00 0.00 1.28
3126 5491 5.423704 TGTATTTGTGAACGGAGGGAATA 57.576 39.130 0.00 0.00 0.00 1.75
3127 5492 4.295141 TGTATTTGTGAACGGAGGGAAT 57.705 40.909 0.00 0.00 0.00 3.01
3128 5493 3.773418 TGTATTTGTGAACGGAGGGAA 57.227 42.857 0.00 0.00 0.00 3.97
3129 5494 3.325425 TCTTGTATTTGTGAACGGAGGGA 59.675 43.478 0.00 0.00 0.00 4.20
3130 5495 3.670625 TCTTGTATTTGTGAACGGAGGG 58.329 45.455 0.00 0.00 0.00 4.30
3131 5496 4.695455 ACATCTTGTATTTGTGAACGGAGG 59.305 41.667 0.00 0.00 0.00 4.30
3132 5497 5.862924 ACATCTTGTATTTGTGAACGGAG 57.137 39.130 0.00 0.00 0.00 4.63
3133 5498 5.995282 AGAACATCTTGTATTTGTGAACGGA 59.005 36.000 0.00 0.00 0.00 4.69
3134 5499 6.241207 AGAACATCTTGTATTTGTGAACGG 57.759 37.500 0.00 0.00 0.00 4.44
3135 5500 8.495949 AGTTAGAACATCTTGTATTTGTGAACG 58.504 33.333 0.00 0.00 0.00 3.95
3162 5527 7.230108 TGTGTATATAAACCCGGTTCACAAAAA 59.770 33.333 14.65 0.00 31.85 1.94
3163 5528 6.713903 TGTGTATATAAACCCGGTTCACAAAA 59.286 34.615 14.65 0.00 31.85 2.44
3164 5529 6.149142 GTGTGTATATAAACCCGGTTCACAAA 59.851 38.462 17.34 5.29 35.59 2.83
3165 5530 5.642919 GTGTGTATATAAACCCGGTTCACAA 59.357 40.000 17.34 4.61 35.59 3.33
3166 5531 5.177326 GTGTGTATATAAACCCGGTTCACA 58.823 41.667 13.52 13.52 0.00 3.58
3167 5532 4.268405 CGTGTGTATATAAACCCGGTTCAC 59.732 45.833 2.46 6.91 0.00 3.18
3168 5533 4.081752 ACGTGTGTATATAAACCCGGTTCA 60.082 41.667 11.84 0.00 0.00 3.18
3169 5534 4.432712 ACGTGTGTATATAAACCCGGTTC 58.567 43.478 11.84 0.00 0.00 3.62
3170 5535 4.470334 ACGTGTGTATATAAACCCGGTT 57.530 40.909 11.84 0.00 0.00 4.44
3171 5536 4.470334 AACGTGTGTATATAAACCCGGT 57.530 40.909 11.84 2.94 0.00 5.28
3172 5537 5.799681 AAAACGTGTGTATATAAACCCGG 57.200 39.130 11.84 0.00 0.00 5.73
3173 5538 7.063308 ACACTAAAACGTGTGTATATAAACCCG 59.937 37.037 7.55 6.40 45.74 5.28
3174 5539 8.255394 ACACTAAAACGTGTGTATATAAACCC 57.745 34.615 7.55 0.00 45.74 4.11
3187 5552 5.147865 TGTGAACAAACACACTAAAACGTG 58.852 37.500 0.00 0.00 44.29 4.49
3188 5553 5.359716 TGTGAACAAACACACTAAAACGT 57.640 34.783 0.00 0.00 44.29 3.99
3199 5564 4.438065 CGGACTGAAATGTGTGAACAAACA 60.438 41.667 0.14 0.14 0.00 2.83
3200 5565 4.035017 CGGACTGAAATGTGTGAACAAAC 58.965 43.478 0.00 0.00 0.00 2.93
3201 5566 3.692101 ACGGACTGAAATGTGTGAACAAA 59.308 39.130 0.00 0.00 0.00 2.83
3202 5567 3.275143 ACGGACTGAAATGTGTGAACAA 58.725 40.909 0.00 0.00 0.00 2.83
3203 5568 2.912771 ACGGACTGAAATGTGTGAACA 58.087 42.857 0.00 0.00 0.00 3.18
3204 5569 4.451096 ACATACGGACTGAAATGTGTGAAC 59.549 41.667 6.32 0.00 31.56 3.18
3205 5570 4.637276 ACATACGGACTGAAATGTGTGAA 58.363 39.130 6.32 0.00 31.56 3.18
3206 5571 4.265904 ACATACGGACTGAAATGTGTGA 57.734 40.909 6.32 0.00 31.56 3.58
3207 5572 5.168569 ACTACATACGGACTGAAATGTGTG 58.831 41.667 13.75 10.18 34.54 3.82
3208 5573 5.401531 ACTACATACGGACTGAAATGTGT 57.598 39.130 13.75 8.99 34.54 3.72
3209 5574 4.804139 GGACTACATACGGACTGAAATGTG 59.196 45.833 13.75 8.57 34.54 3.21
3210 5575 4.464951 TGGACTACATACGGACTGAAATGT 59.535 41.667 10.46 10.46 36.56 2.71
3211 5576 5.006153 TGGACTACATACGGACTGAAATG 57.994 43.478 0.00 0.00 0.00 2.32
3212 5577 5.871396 ATGGACTACATACGGACTGAAAT 57.129 39.130 0.00 0.00 38.26 2.17
3213 5578 6.971726 ATATGGACTACATACGGACTGAAA 57.028 37.500 0.00 0.00 44.41 2.69
3214 5579 6.548251 TCAATATGGACTACATACGGACTGAA 59.452 38.462 0.00 0.00 44.41 3.02
3215 5580 6.066032 TCAATATGGACTACATACGGACTGA 58.934 40.000 0.00 0.00 44.41 3.41
3216 5581 6.327279 TCAATATGGACTACATACGGACTG 57.673 41.667 0.00 0.00 44.41 3.51
3217 5582 6.971726 TTCAATATGGACTACATACGGACT 57.028 37.500 0.00 0.00 44.41 3.85
3218 5583 9.871238 ATATTTCAATATGGACTACATACGGAC 57.129 33.333 0.00 0.00 44.41 4.79
3220 5585 9.314321 GGATATTTCAATATGGACTACATACGG 57.686 37.037 0.00 0.00 44.41 4.02
3221 5586 9.869757 TGGATATTTCAATATGGACTACATACG 57.130 33.333 0.00 0.00 44.41 3.06
3243 5608 9.787532 CGTTCACAAATATAAGATGTTTTGGAT 57.212 29.630 0.00 0.00 34.23 3.41
3244 5609 8.240682 CCGTTCACAAATATAAGATGTTTTGGA 58.759 33.333 0.00 0.00 34.23 3.53
3245 5610 8.240682 TCCGTTCACAAATATAAGATGTTTTGG 58.759 33.333 0.00 0.00 34.23 3.28
3246 5611 9.277565 CTCCGTTCACAAATATAAGATGTTTTG 57.722 33.333 0.00 0.00 35.66 2.44
3247 5612 8.458843 CCTCCGTTCACAAATATAAGATGTTTT 58.541 33.333 0.00 0.00 0.00 2.43
3248 5613 7.067008 CCCTCCGTTCACAAATATAAGATGTTT 59.933 37.037 0.00 0.00 0.00 2.83
3249 5614 6.542370 CCCTCCGTTCACAAATATAAGATGTT 59.458 38.462 0.00 0.00 0.00 2.71
3250 5615 6.055588 CCCTCCGTTCACAAATATAAGATGT 58.944 40.000 0.00 0.00 0.00 3.06
3251 5616 6.288294 TCCCTCCGTTCACAAATATAAGATG 58.712 40.000 0.00 0.00 0.00 2.90
3252 5617 6.099845 ACTCCCTCCGTTCACAAATATAAGAT 59.900 38.462 0.00 0.00 0.00 2.40
3253 5618 5.424252 ACTCCCTCCGTTCACAAATATAAGA 59.576 40.000 0.00 0.00 0.00 2.10
3254 5619 5.671493 ACTCCCTCCGTTCACAAATATAAG 58.329 41.667 0.00 0.00 0.00 1.73
3255 5620 5.687166 ACTCCCTCCGTTCACAAATATAA 57.313 39.130 0.00 0.00 0.00 0.98
3256 5621 6.989155 ATACTCCCTCCGTTCACAAATATA 57.011 37.500 0.00 0.00 0.00 0.86
3257 5622 5.888982 ATACTCCCTCCGTTCACAAATAT 57.111 39.130 0.00 0.00 0.00 1.28
3258 5623 5.895534 AGTATACTCCCTCCGTTCACAAATA 59.104 40.000 0.00 0.00 0.00 1.40
3259 5624 4.715297 AGTATACTCCCTCCGTTCACAAAT 59.285 41.667 0.00 0.00 0.00 2.32
3260 5625 4.081862 CAGTATACTCCCTCCGTTCACAAA 60.082 45.833 1.26 0.00 0.00 2.83
3261 5626 3.446161 CAGTATACTCCCTCCGTTCACAA 59.554 47.826 1.26 0.00 0.00 3.33
3262 5627 3.021695 CAGTATACTCCCTCCGTTCACA 58.978 50.000 1.26 0.00 0.00 3.58
3263 5628 3.022406 ACAGTATACTCCCTCCGTTCAC 58.978 50.000 1.26 0.00 0.00 3.18
3264 5629 3.377253 ACAGTATACTCCCTCCGTTCA 57.623 47.619 1.26 0.00 0.00 3.18
3265 5630 5.128919 TCTTACAGTATACTCCCTCCGTTC 58.871 45.833 1.26 0.00 0.00 3.95
3266 5631 5.121380 TCTTACAGTATACTCCCTCCGTT 57.879 43.478 1.26 0.00 0.00 4.44
3267 5632 4.785346 TCTTACAGTATACTCCCTCCGT 57.215 45.455 1.26 0.00 0.00 4.69
3268 5633 5.047943 CCATTCTTACAGTATACTCCCTCCG 60.048 48.000 1.26 0.00 0.00 4.63
3269 5634 5.839606 ACCATTCTTACAGTATACTCCCTCC 59.160 44.000 1.26 0.00 0.00 4.30
3270 5635 6.980416 ACCATTCTTACAGTATACTCCCTC 57.020 41.667 1.26 0.00 0.00 4.30
3271 5636 8.066247 ACTAACCATTCTTACAGTATACTCCCT 58.934 37.037 1.26 0.00 0.00 4.20
3272 5637 8.142551 CACTAACCATTCTTACAGTATACTCCC 58.857 40.741 1.26 0.00 0.00 4.30
3273 5638 8.142551 CCACTAACCATTCTTACAGTATACTCC 58.857 40.741 1.26 0.00 0.00 3.85
3274 5639 8.693625 ACCACTAACCATTCTTACAGTATACTC 58.306 37.037 1.26 0.00 0.00 2.59
3275 5640 8.605325 ACCACTAACCATTCTTACAGTATACT 57.395 34.615 0.00 0.00 0.00 2.12
3280 5645 9.582648 AATTTTACCACTAACCATTCTTACAGT 57.417 29.630 0.00 0.00 0.00 3.55
3290 5655 9.262358 GCAAAACATTAATTTTACCACTAACCA 57.738 29.630 0.00 0.00 30.57 3.67
3291 5656 9.262358 TGCAAAACATTAATTTTACCACTAACC 57.738 29.630 0.00 0.00 30.57 2.85
3295 5660 9.389755 AGTTTGCAAAACATTAATTTTACCACT 57.610 25.926 14.67 0.00 30.57 4.00
3296 5661 9.432077 CAGTTTGCAAAACATTAATTTTACCAC 57.568 29.630 14.67 0.00 30.57 4.16
3297 5662 9.167311 ACAGTTTGCAAAACATTAATTTTACCA 57.833 25.926 14.67 0.00 30.57 3.25
3305 5670 9.539825 ACATCAATACAGTTTGCAAAACATTAA 57.460 25.926 14.67 0.00 0.00 1.40
3306 5671 9.190858 GACATCAATACAGTTTGCAAAACATTA 57.809 29.630 14.67 3.63 0.00 1.90
3307 5672 7.171337 GGACATCAATACAGTTTGCAAAACATT 59.829 33.333 14.67 8.03 0.00 2.71
3308 5673 6.646240 GGACATCAATACAGTTTGCAAAACAT 59.354 34.615 14.67 4.53 0.00 2.71
3309 5674 5.982516 GGACATCAATACAGTTTGCAAAACA 59.017 36.000 14.67 0.00 0.00 2.83
3310 5675 5.982516 TGGACATCAATACAGTTTGCAAAAC 59.017 36.000 14.67 8.45 0.00 2.43
3311 5676 6.154203 TGGACATCAATACAGTTTGCAAAA 57.846 33.333 14.67 0.00 0.00 2.44
3312 5677 5.781210 TGGACATCAATACAGTTTGCAAA 57.219 34.783 8.05 8.05 0.00 3.68
3313 5678 5.781210 TTGGACATCAATACAGTTTGCAA 57.219 34.783 0.00 0.00 0.00 4.08
3314 5679 5.781210 TTTGGACATCAATACAGTTTGCA 57.219 34.783 0.00 0.00 34.98 4.08
3315 5680 5.405269 GGTTTTGGACATCAATACAGTTTGC 59.595 40.000 0.00 0.00 38.50 3.68
3316 5681 6.511416 TGGTTTTGGACATCAATACAGTTTG 58.489 36.000 0.00 0.00 38.50 2.93
3317 5682 6.723298 TGGTTTTGGACATCAATACAGTTT 57.277 33.333 0.00 0.00 38.50 2.66
3318 5683 6.723298 TTGGTTTTGGACATCAATACAGTT 57.277 33.333 0.00 0.00 38.50 3.16
3319 5684 6.723298 TTTGGTTTTGGACATCAATACAGT 57.277 33.333 0.00 0.00 38.50 3.55
3320 5685 7.209475 AGTTTTGGTTTTGGACATCAATACAG 58.791 34.615 0.00 0.00 38.50 2.74
3321 5686 7.118496 AGTTTTGGTTTTGGACATCAATACA 57.882 32.000 0.00 0.00 38.50 2.29
3322 5687 8.432110 AAAGTTTTGGTTTTGGACATCAATAC 57.568 30.769 0.00 0.00 36.84 1.89
3323 5688 9.103861 GAAAAGTTTTGGTTTTGGACATCAATA 57.896 29.630 5.36 0.00 34.98 1.90
3324 5689 7.828717 AGAAAAGTTTTGGTTTTGGACATCAAT 59.171 29.630 5.36 0.00 34.98 2.57
3325 5690 7.164803 AGAAAAGTTTTGGTTTTGGACATCAA 58.835 30.769 5.36 0.00 0.00 2.57
3326 5691 6.706295 AGAAAAGTTTTGGTTTTGGACATCA 58.294 32.000 5.36 0.00 0.00 3.07
3327 5692 7.979537 ACTAGAAAAGTTTTGGTTTTGGACATC 59.020 33.333 5.36 0.00 33.35 3.06
3328 5693 7.847096 ACTAGAAAAGTTTTGGTTTTGGACAT 58.153 30.769 5.36 0.00 33.35 3.06
3329 5694 7.234661 ACTAGAAAAGTTTTGGTTTTGGACA 57.765 32.000 5.36 0.00 33.35 4.02
3330 5695 7.601130 ACAACTAGAAAAGTTTTGGTTTTGGAC 59.399 33.333 5.36 0.00 46.61 4.02
3331 5696 7.672240 ACAACTAGAAAAGTTTTGGTTTTGGA 58.328 30.769 5.36 0.00 46.61 3.53
3332 5697 7.899178 ACAACTAGAAAAGTTTTGGTTTTGG 57.101 32.000 5.36 0.72 46.61 3.28
3333 5698 9.083080 CCTACAACTAGAAAAGTTTTGGTTTTG 57.917 33.333 5.36 6.68 46.61 2.44
3334 5699 8.255206 CCCTACAACTAGAAAAGTTTTGGTTTT 58.745 33.333 5.36 4.46 46.61 2.43
3335 5700 7.147794 CCCCTACAACTAGAAAAGTTTTGGTTT 60.148 37.037 5.36 3.26 46.61 3.27
3336 5701 6.322969 CCCCTACAACTAGAAAAGTTTTGGTT 59.677 38.462 5.36 5.51 46.61 3.67
3337 5702 5.831525 CCCCTACAACTAGAAAAGTTTTGGT 59.168 40.000 5.36 0.00 46.61 3.67
3338 5703 5.243060 CCCCCTACAACTAGAAAAGTTTTGG 59.757 44.000 5.36 0.00 46.61 3.28
3339 5704 5.278808 GCCCCCTACAACTAGAAAAGTTTTG 60.279 44.000 5.36 0.00 46.61 2.44
3340 5705 4.831155 GCCCCCTACAACTAGAAAAGTTTT 59.169 41.667 0.00 0.00 46.61 2.43
3341 5706 4.141111 TGCCCCCTACAACTAGAAAAGTTT 60.141 41.667 0.00 0.00 46.61 2.66
3343 5708 2.983898 TGCCCCCTACAACTAGAAAAGT 59.016 45.455 0.00 0.00 41.49 2.66
3344 5709 3.263425 TCTGCCCCCTACAACTAGAAAAG 59.737 47.826 0.00 0.00 0.00 2.27
3345 5710 3.253220 TCTGCCCCCTACAACTAGAAAA 58.747 45.455 0.00 0.00 0.00 2.29
3346 5711 2.910544 TCTGCCCCCTACAACTAGAAA 58.089 47.619 0.00 0.00 0.00 2.52
3347 5712 2.634639 TCTGCCCCCTACAACTAGAA 57.365 50.000 0.00 0.00 0.00 2.10
3348 5713 2.043939 TCTTCTGCCCCCTACAACTAGA 59.956 50.000 0.00 0.00 0.00 2.43
3349 5714 2.467880 TCTTCTGCCCCCTACAACTAG 58.532 52.381 0.00 0.00 0.00 2.57
3350 5715 2.634639 TCTTCTGCCCCCTACAACTA 57.365 50.000 0.00 0.00 0.00 2.24
3351 5716 1.972588 ATCTTCTGCCCCCTACAACT 58.027 50.000 0.00 0.00 0.00 3.16
3352 5717 3.136626 ACATATCTTCTGCCCCCTACAAC 59.863 47.826 0.00 0.00 0.00 3.32
3353 5718 3.136443 CACATATCTTCTGCCCCCTACAA 59.864 47.826 0.00 0.00 0.00 2.41
3354 5719 2.705658 CACATATCTTCTGCCCCCTACA 59.294 50.000 0.00 0.00 0.00 2.74
3355 5720 2.551071 GCACATATCTTCTGCCCCCTAC 60.551 54.545 0.00 0.00 0.00 3.18
3356 5721 1.699634 GCACATATCTTCTGCCCCCTA 59.300 52.381 0.00 0.00 0.00 3.53
3357 5722 0.475906 GCACATATCTTCTGCCCCCT 59.524 55.000 0.00 0.00 0.00 4.79
3358 5723 0.886490 CGCACATATCTTCTGCCCCC 60.886 60.000 0.00 0.00 0.00 5.40
3359 5724 0.106708 TCGCACATATCTTCTGCCCC 59.893 55.000 0.00 0.00 0.00 5.80
3360 5725 1.202580 ACTCGCACATATCTTCTGCCC 60.203 52.381 0.00 0.00 0.00 5.36
3361 5726 2.231215 ACTCGCACATATCTTCTGCC 57.769 50.000 0.00 0.00 0.00 4.85
3362 5727 5.914085 ATAAACTCGCACATATCTTCTGC 57.086 39.130 0.00 0.00 0.00 4.26
3363 5728 7.468922 TCAATAAACTCGCACATATCTTCTG 57.531 36.000 0.00 0.00 0.00 3.02
3364 5729 7.712639 ACATCAATAAACTCGCACATATCTTCT 59.287 33.333 0.00 0.00 0.00 2.85
3365 5730 7.855545 ACATCAATAAACTCGCACATATCTTC 58.144 34.615 0.00 0.00 0.00 2.87
3366 5731 7.792374 ACATCAATAAACTCGCACATATCTT 57.208 32.000 0.00 0.00 0.00 2.40
3367 5732 7.792374 AACATCAATAAACTCGCACATATCT 57.208 32.000 0.00 0.00 0.00 1.98
3368 5733 8.841444 AAAACATCAATAAACTCGCACATATC 57.159 30.769 0.00 0.00 0.00 1.63
3369 5734 9.289303 GAAAAACATCAATAAACTCGCACATAT 57.711 29.630 0.00 0.00 0.00 1.78
3370 5735 7.753132 GGAAAAACATCAATAAACTCGCACATA 59.247 33.333 0.00 0.00 0.00 2.29
3371 5736 6.586082 GGAAAAACATCAATAAACTCGCACAT 59.414 34.615 0.00 0.00 0.00 3.21
3372 5737 5.918011 GGAAAAACATCAATAAACTCGCACA 59.082 36.000 0.00 0.00 0.00 4.57
3373 5738 5.344933 GGGAAAAACATCAATAAACTCGCAC 59.655 40.000 0.00 0.00 0.00 5.34
3374 5739 5.465935 GGGAAAAACATCAATAAACTCGCA 58.534 37.500 0.00 0.00 0.00 5.10
3375 5740 4.862574 GGGGAAAAACATCAATAAACTCGC 59.137 41.667 0.00 0.00 0.00 5.03
3376 5741 5.185056 AGGGGGAAAAACATCAATAAACTCG 59.815 40.000 0.00 0.00 0.00 4.18
3377 5742 6.605471 AGGGGGAAAAACATCAATAAACTC 57.395 37.500 0.00 0.00 0.00 3.01
3378 5743 6.295067 CGAAGGGGGAAAAACATCAATAAACT 60.295 38.462 0.00 0.00 0.00 2.66
3379 5744 5.867174 CGAAGGGGGAAAAACATCAATAAAC 59.133 40.000 0.00 0.00 0.00 2.01
3380 5745 5.540719 ACGAAGGGGGAAAAACATCAATAAA 59.459 36.000 0.00 0.00 0.00 1.40
3381 5746 5.081032 ACGAAGGGGGAAAAACATCAATAA 58.919 37.500 0.00 0.00 0.00 1.40
3382 5747 4.668636 ACGAAGGGGGAAAAACATCAATA 58.331 39.130 0.00 0.00 0.00 1.90
3383 5748 3.506398 ACGAAGGGGGAAAAACATCAAT 58.494 40.909 0.00 0.00 0.00 2.57
3384 5749 2.952116 ACGAAGGGGGAAAAACATCAA 58.048 42.857 0.00 0.00 0.00 2.57
3385 5750 2.668144 ACGAAGGGGGAAAAACATCA 57.332 45.000 0.00 0.00 0.00 3.07
3386 5751 3.319689 TCAAACGAAGGGGGAAAAACATC 59.680 43.478 0.00 0.00 0.00 3.06
3387 5752 3.069016 GTCAAACGAAGGGGGAAAAACAT 59.931 43.478 0.00 0.00 0.00 2.71
3388 5753 2.427812 GTCAAACGAAGGGGGAAAAACA 59.572 45.455 0.00 0.00 0.00 2.83
3389 5754 2.223876 GGTCAAACGAAGGGGGAAAAAC 60.224 50.000 0.00 0.00 0.00 2.43
3390 5755 2.033372 GGTCAAACGAAGGGGGAAAAA 58.967 47.619 0.00 0.00 0.00 1.94
3391 5756 1.215924 AGGTCAAACGAAGGGGGAAAA 59.784 47.619 0.00 0.00 0.00 2.29
3392 5757 0.848053 AGGTCAAACGAAGGGGGAAA 59.152 50.000 0.00 0.00 0.00 3.13
3393 5758 0.848053 AAGGTCAAACGAAGGGGGAA 59.152 50.000 0.00 0.00 0.00 3.97
3394 5759 0.848053 AAAGGTCAAACGAAGGGGGA 59.152 50.000 0.00 0.00 0.00 4.81
3395 5760 1.699730 AAAAGGTCAAACGAAGGGGG 58.300 50.000 0.00 0.00 0.00 5.40
3396 5761 4.076394 TGATAAAAGGTCAAACGAAGGGG 58.924 43.478 0.00 0.00 0.00 4.79
3397 5762 4.379499 GCTGATAAAAGGTCAAACGAAGGG 60.379 45.833 0.00 0.00 0.00 3.95
3398 5763 4.215399 TGCTGATAAAAGGTCAAACGAAGG 59.785 41.667 0.00 0.00 0.00 3.46
3399 5764 5.147162 GTGCTGATAAAAGGTCAAACGAAG 58.853 41.667 0.00 0.00 0.00 3.79
3400 5765 4.576873 TGTGCTGATAAAAGGTCAAACGAA 59.423 37.500 0.00 0.00 0.00 3.85
3401 5766 4.130857 TGTGCTGATAAAAGGTCAAACGA 58.869 39.130 0.00 0.00 0.00 3.85
3402 5767 4.466828 CTGTGCTGATAAAAGGTCAAACG 58.533 43.478 0.00 0.00 0.00 3.60
3403 5768 4.229876 GCTGTGCTGATAAAAGGTCAAAC 58.770 43.478 0.00 0.00 0.00 2.93
3404 5769 3.255642 GGCTGTGCTGATAAAAGGTCAAA 59.744 43.478 0.00 0.00 0.00 2.69
3405 5770 2.819608 GGCTGTGCTGATAAAAGGTCAA 59.180 45.455 0.00 0.00 0.00 3.18
3406 5771 2.224744 TGGCTGTGCTGATAAAAGGTCA 60.225 45.455 0.00 0.00 0.00 4.02
3407 5772 2.436417 TGGCTGTGCTGATAAAAGGTC 58.564 47.619 0.00 0.00 0.00 3.85
3408 5773 2.584835 TGGCTGTGCTGATAAAAGGT 57.415 45.000 0.00 0.00 0.00 3.50
3409 5774 4.427312 GAAATGGCTGTGCTGATAAAAGG 58.573 43.478 0.00 0.00 0.00 3.11
3410 5775 4.100529 CGAAATGGCTGTGCTGATAAAAG 58.899 43.478 0.00 0.00 0.00 2.27
3411 5776 3.673052 GCGAAATGGCTGTGCTGATAAAA 60.673 43.478 0.00 0.00 0.00 1.52
3412 5777 2.159393 GCGAAATGGCTGTGCTGATAAA 60.159 45.455 0.00 0.00 0.00 1.40
3413 5778 1.401552 GCGAAATGGCTGTGCTGATAA 59.598 47.619 0.00 0.00 0.00 1.75
3414 5779 1.016627 GCGAAATGGCTGTGCTGATA 58.983 50.000 0.00 0.00 0.00 2.15
3415 5780 1.660560 GGCGAAATGGCTGTGCTGAT 61.661 55.000 0.00 0.00 40.72 2.90
3416 5781 2.334946 GGCGAAATGGCTGTGCTGA 61.335 57.895 0.00 0.00 40.72 4.26
3417 5782 2.180017 GGCGAAATGGCTGTGCTG 59.820 61.111 0.00 0.00 40.72 4.41
3424 5789 0.960364 TGAAGGACAGGCGAAATGGC 60.960 55.000 0.00 0.00 45.27 4.40
3425 5790 0.804989 GTGAAGGACAGGCGAAATGG 59.195 55.000 0.00 0.00 0.00 3.16
3426 5791 1.466167 CAGTGAAGGACAGGCGAAATG 59.534 52.381 0.00 0.00 0.00 2.32
3427 5792 1.813513 CAGTGAAGGACAGGCGAAAT 58.186 50.000 0.00 0.00 0.00 2.17
3428 5793 0.884704 GCAGTGAAGGACAGGCGAAA 60.885 55.000 0.00 0.00 0.00 3.46
3429 5794 1.301716 GCAGTGAAGGACAGGCGAA 60.302 57.895 0.00 0.00 0.00 4.70
3432 5797 3.198872 GTTATAGCAGTGAAGGACAGGC 58.801 50.000 0.00 0.00 0.00 4.85
3447 5812 9.220767 GGCACAAGGATTATAAGAAGGTTATAG 57.779 37.037 0.00 0.00 0.00 1.31


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.