Multiple sequence alignment - TraesCS2A01G422400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G422400 chr2A 100.000 3926 0 0 1 3926 677484602 677480677 0.000000e+00 7251
1 TraesCS2A01G422400 chr2A 87.826 345 36 6 1208 1548 677483057 677482715 2.200000e-107 399
2 TraesCS2A01G422400 chr2A 87.826 345 36 6 1546 1888 677483395 677483055 2.200000e-107 399
3 TraesCS2A01G422400 chr2D 90.026 3449 200 71 1 3365 533065238 533061850 0.000000e+00 4331
4 TraesCS2A01G422400 chr2D 86.994 346 37 7 1208 1548 533063649 533063307 2.210000e-102 383
5 TraesCS2A01G422400 chr2D 83.815 346 33 15 1546 1888 533063972 533063647 1.370000e-79 307
6 TraesCS2A01G422400 chr2D 92.019 213 15 1 3716 3926 533061134 533060922 8.250000e-77 298
7 TraesCS2A01G422400 chr2B 89.997 3429 208 68 1 3365 632626587 632623230 0.000000e+00 4307
8 TraesCS2A01G422400 chr2B 88.150 346 33 8 1208 1548 632625027 632624685 4.720000e-109 405
9 TraesCS2A01G422400 chr2B 81.792 346 31 12 1546 1888 632625341 632625025 1.080000e-65 261
10 TraesCS2A01G422400 chr7D 82.386 352 48 8 1875 2222 625200336 625200677 1.070000e-75 294
11 TraesCS2A01G422400 chr7A 80.299 335 55 3 1874 2207 436887189 436887513 3.920000e-60 243
12 TraesCS2A01G422400 chr3D 84.343 198 29 2 1875 2071 534211381 534211185 4.000000e-45 193
13 TraesCS2A01G422400 chr3B 82.828 198 32 2 1875 2071 706321683 706321487 4.030000e-40 176


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G422400 chr2A 677480677 677484602 3925 True 2683.000000 7251 91.884000 1 3926 3 chr2A.!!$R1 3925
1 TraesCS2A01G422400 chr2D 533060922 533065238 4316 True 1329.750000 4331 88.213500 1 3926 4 chr2D.!!$R1 3925
2 TraesCS2A01G422400 chr2B 632623230 632626587 3357 True 1657.666667 4307 86.646333 1 3365 3 chr2B.!!$R1 3364

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
553 598 0.395724 CCCTTTGCTACCCCATCCAC 60.396 60.000 0.00 0.0 0.00 4.02 F
1281 1352 0.783206 TGGCTTGAGGGGAAATGGAA 59.217 50.000 0.00 0.0 0.00 3.53 F
2656 2735 1.518572 GTCGGCCGACGTGATGAAT 60.519 57.895 39.77 0.0 44.69 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1861 1935 2.548493 GCAATCCTGCCACACACAAAAT 60.548 45.455 0.0 0.0 43.26 1.82 R
2844 2923 0.033504 ACACGAATTCCAGTGACGCT 59.966 50.000 17.2 0.0 40.56 5.07 R
3505 3611 1.127951 GATACAACCAAACGCCGTCTG 59.872 52.381 0.0 0.0 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 5.981315 CACCTAATGGAAAGCATTATTGCAG 59.019 40.000 11.88 0.00 43.33 4.41
119 140 2.124570 CCTCCCTTGCCATGTCCG 60.125 66.667 0.00 0.00 0.00 4.79
172 193 1.917336 TTTCCGGCCATCTGGTACCC 61.917 60.000 10.07 0.00 39.81 3.69
208 229 4.095410 TGAAACTCACACTTTGCACTTG 57.905 40.909 0.00 0.00 0.00 3.16
255 276 2.153645 TGCATTGTTTGAGATGCTCGT 58.846 42.857 9.39 0.00 46.68 4.18
296 317 1.182673 GCACACATTAGCGCGATTTG 58.817 50.000 12.10 8.01 0.00 2.32
314 335 1.485124 TGCGGATAGATGTCTGTGGT 58.515 50.000 0.00 0.00 0.00 4.16
316 337 1.409064 GCGGATAGATGTCTGTGGTCA 59.591 52.381 0.00 0.00 0.00 4.02
342 375 3.855689 AATAGTCTGTTTGTGCATGCC 57.144 42.857 16.68 7.25 0.00 4.40
346 379 2.063266 GTCTGTTTGTGCATGCCATTG 58.937 47.619 16.68 0.00 0.00 2.82
360 404 2.387757 GCCATTGGATTTAGGGCAGAA 58.612 47.619 6.95 0.00 44.01 3.02
392 436 4.757594 TGGCCACATTGCTTGATTTAATC 58.242 39.130 0.00 0.00 0.00 1.75
437 481 9.013490 CATGAAATGTTTATTTGCTGTACTAGC 57.987 33.333 9.52 9.52 45.83 3.42
504 548 5.067023 AGTCTTTGAGGCTTGAAACAAGAAG 59.933 40.000 14.44 8.86 0.00 2.85
543 587 3.346734 CCCCTGGCCCCTTTGCTA 61.347 66.667 0.00 0.00 0.00 3.49
548 593 3.668142 GGCCCCTTTGCTACCCCA 61.668 66.667 0.00 0.00 0.00 4.96
553 598 0.395724 CCCTTTGCTACCCCATCCAC 60.396 60.000 0.00 0.00 0.00 4.02
575 620 1.206072 CTGAAGAAGCACACGCAGC 59.794 57.895 0.00 0.00 42.27 5.25
577 622 2.203195 AAGAAGCACACGCAGCCA 60.203 55.556 0.00 0.00 42.27 4.75
578 623 2.449556 GAAGAAGCACACGCAGCCAC 62.450 60.000 0.00 0.00 42.27 5.01
579 624 3.279116 GAAGCACACGCAGCCACA 61.279 61.111 0.00 0.00 42.27 4.17
580 625 3.245948 GAAGCACACGCAGCCACAG 62.246 63.158 0.00 0.00 42.27 3.66
584 629 3.625897 ACACGCAGCCACAGCCTA 61.626 61.111 0.00 0.00 41.25 3.93
679 738 7.009723 GCTACTCTTTTACTCTTCACAGCATAC 59.990 40.741 0.00 0.00 0.00 2.39
792 851 2.550830 TGTGGAGCTTGGAAGAAGTC 57.449 50.000 0.00 0.00 0.00 3.01
796 855 2.070028 GGAGCTTGGAAGAAGTCGTTC 58.930 52.381 0.00 0.00 0.00 3.95
797 856 2.289133 GGAGCTTGGAAGAAGTCGTTCT 60.289 50.000 0.00 0.00 45.56 3.01
835 894 4.297299 TGCTTCTGAACTCTTGCTTTTG 57.703 40.909 1.19 0.00 0.00 2.44
849 908 4.405116 TGCTTTTGAAACCATCTGCTTT 57.595 36.364 0.00 0.00 0.00 3.51
941 1005 2.380084 TCTTGGATGAACGTAGGCAC 57.620 50.000 0.00 0.00 0.00 5.01
962 1026 4.631377 CACCATGATTTGACGAGCTCTTTA 59.369 41.667 12.85 0.00 0.00 1.85
1140 1211 1.745489 GCAGGTTGGGGTGATCGTC 60.745 63.158 0.00 0.00 0.00 4.20
1281 1352 0.783206 TGGCTTGAGGGGAAATGGAA 59.217 50.000 0.00 0.00 0.00 3.53
1287 1358 4.696877 GCTTGAGGGGAAATGGAAATTTTG 59.303 41.667 0.00 0.00 0.00 2.44
1303 1374 8.247562 TGGAAATTTTGGATATTGTTTAGGTCG 58.752 33.333 0.00 0.00 0.00 4.79
1306 1377 5.554822 TTTGGATATTGTTTAGGTCGCAC 57.445 39.130 0.00 0.00 0.00 5.34
1315 1386 3.002862 TGTTTAGGTCGCACAATGTTGTC 59.997 43.478 0.00 0.00 39.91 3.18
1319 1390 2.027192 AGGTCGCACAATGTTGTCCTAT 60.027 45.455 2.94 0.00 39.91 2.57
1322 1393 3.001330 GTCGCACAATGTTGTCCTATAGC 59.999 47.826 0.00 0.00 39.91 2.97
1324 1395 3.623060 CGCACAATGTTGTCCTATAGCTT 59.377 43.478 0.00 0.00 39.91 3.74
1325 1396 4.260375 CGCACAATGTTGTCCTATAGCTTC 60.260 45.833 0.00 0.00 39.91 3.86
1328 1399 5.824624 CACAATGTTGTCCTATAGCTTCCAT 59.175 40.000 0.00 0.00 39.91 3.41
1329 1400 5.824624 ACAATGTTGTCCTATAGCTTCCATG 59.175 40.000 0.00 0.00 36.50 3.66
1330 1401 5.894298 ATGTTGTCCTATAGCTTCCATGA 57.106 39.130 0.00 0.00 0.00 3.07
1331 1402 5.023533 TGTTGTCCTATAGCTTCCATGAC 57.976 43.478 0.00 0.00 0.00 3.06
1332 1403 4.051922 GTTGTCCTATAGCTTCCATGACG 58.948 47.826 0.00 0.00 0.00 4.35
1333 1404 3.296854 TGTCCTATAGCTTCCATGACGT 58.703 45.455 0.00 0.00 0.00 4.34
1334 1405 3.704566 TGTCCTATAGCTTCCATGACGTT 59.295 43.478 0.00 0.00 0.00 3.99
1335 1406 4.202121 TGTCCTATAGCTTCCATGACGTTC 60.202 45.833 0.00 0.00 0.00 3.95
1336 1407 4.038162 GTCCTATAGCTTCCATGACGTTCT 59.962 45.833 0.00 0.00 0.00 3.01
1337 1408 4.649674 TCCTATAGCTTCCATGACGTTCTT 59.350 41.667 0.00 0.00 0.00 2.52
1338 1409 5.128827 TCCTATAGCTTCCATGACGTTCTTT 59.871 40.000 0.00 0.00 0.00 2.52
1339 1410 5.235186 CCTATAGCTTCCATGACGTTCTTTG 59.765 44.000 0.00 0.00 0.00 2.77
1340 1411 2.851195 AGCTTCCATGACGTTCTTTGT 58.149 42.857 0.00 0.00 0.00 2.83
1341 1412 2.549754 AGCTTCCATGACGTTCTTTGTG 59.450 45.455 0.00 0.00 0.00 3.33
1342 1413 2.290641 GCTTCCATGACGTTCTTTGTGT 59.709 45.455 0.00 0.00 0.00 3.72
1343 1414 3.849645 GCTTCCATGACGTTCTTTGTGTG 60.850 47.826 0.00 0.00 0.00 3.82
1356 1427 6.183360 CGTTCTTTGTGTGTTCAGTTAGTCTT 60.183 38.462 0.00 0.00 0.00 3.01
1357 1428 6.903883 TCTTTGTGTGTTCAGTTAGTCTTC 57.096 37.500 0.00 0.00 0.00 2.87
1372 1443 6.481644 AGTTAGTCTTCTGCAGTTTTTCTCAG 59.518 38.462 14.67 0.00 0.00 3.35
1381 1452 4.094294 TGCAGTTTTTCTCAGTGTGTACAC 59.906 41.667 19.36 19.36 46.77 2.90
1438 1512 4.820897 TCTCTTGTTGATAATCTGCACGT 58.179 39.130 0.00 0.00 0.00 4.49
1529 1603 5.673568 GCCTGTTTTCTTTTCCTTTTTGTGC 60.674 40.000 0.00 0.00 0.00 4.57
1568 1642 3.187227 CACCAGTTCAACTACTGCATGTC 59.813 47.826 0.00 0.00 43.31 3.06
1631 1705 6.735229 AGGGGAAATGGAAATTTTGGATACTT 59.265 34.615 0.00 0.00 37.61 2.24
1633 1707 7.552687 GGGGAAATGGAAATTTTGGATACTTTC 59.447 37.037 0.00 0.00 37.61 2.62
1684 1758 6.612247 TGTCATGACGTTCTTTTGTATGTT 57.388 33.333 20.54 0.00 0.00 2.71
2014 2090 9.747898 TTTCTGGTTTTAGCTAATAATCTTCCA 57.252 29.630 7.08 5.21 0.00 3.53
2227 2303 5.220662 GCAACACGATGCAACAGTTCTATAT 60.221 40.000 0.00 0.00 45.70 0.86
2228 2304 6.675486 GCAACACGATGCAACAGTTCTATATT 60.675 38.462 0.00 0.00 45.70 1.28
2296 2374 8.197439 AGTGCTAATGCCCTAATTTAATTTGTC 58.803 33.333 0.00 0.00 38.71 3.18
2303 2381 5.036737 CCCTAATTTAATTTGTCGCAGCAG 58.963 41.667 0.00 0.00 0.00 4.24
2396 2474 3.255149 GCATTCCTGCCATCCTTTATCAG 59.745 47.826 0.00 0.00 42.88 2.90
2398 2476 4.860802 TTCCTGCCATCCTTTATCAGAA 57.139 40.909 0.00 0.00 0.00 3.02
2400 2478 3.782523 TCCTGCCATCCTTTATCAGAACT 59.217 43.478 0.00 0.00 0.00 3.01
2401 2479 4.133078 CCTGCCATCCTTTATCAGAACTC 58.867 47.826 0.00 0.00 0.00 3.01
2405 2483 5.882557 TGCCATCCTTTATCAGAACTCTTTC 59.117 40.000 0.00 0.00 0.00 2.62
2406 2484 6.118852 GCCATCCTTTATCAGAACTCTTTCT 58.881 40.000 0.00 0.00 43.35 2.52
2433 2512 4.188462 TGTGTGTGTGGTAAAGAGTTGAG 58.812 43.478 0.00 0.00 0.00 3.02
2447 2526 6.625873 AAGAGTTGAGTTTTGATGGAGTTC 57.374 37.500 0.00 0.00 0.00 3.01
2457 2536 7.004086 AGTTTTGATGGAGTTCTGTGGATTTA 58.996 34.615 0.00 0.00 0.00 1.40
2464 2543 6.778821 TGGAGTTCTGTGGATTTAATTCTGA 58.221 36.000 0.00 0.00 0.00 3.27
2465 2544 7.230747 TGGAGTTCTGTGGATTTAATTCTGAA 58.769 34.615 0.00 0.00 0.00 3.02
2466 2545 7.890127 TGGAGTTCTGTGGATTTAATTCTGAAT 59.110 33.333 0.00 0.00 0.00 2.57
2573 2652 4.990426 AGGTGATTTTGTGCTGCAATTTAC 59.010 37.500 2.77 0.00 36.89 2.01
2599 2678 4.101430 ACCCTTGATGAATTTGCTTGTGTT 59.899 37.500 0.00 0.00 0.00 3.32
2656 2735 1.518572 GTCGGCCGACGTGATGAAT 60.519 57.895 39.77 0.00 44.69 2.57
2851 2935 0.366871 CGTATGCAACTGAGCGTCAC 59.633 55.000 0.00 0.00 37.31 3.67
2858 2942 2.146342 CAACTGAGCGTCACTGGAATT 58.854 47.619 0.00 0.00 0.00 2.17
2863 2947 0.033504 AGCGTCACTGGAATTCGTGT 59.966 50.000 11.67 5.10 33.07 4.49
2864 2948 1.271379 AGCGTCACTGGAATTCGTGTA 59.729 47.619 11.67 0.00 33.07 2.90
2865 2949 1.389106 GCGTCACTGGAATTCGTGTAC 59.611 52.381 11.67 8.61 33.07 2.90
2866 2950 2.668250 CGTCACTGGAATTCGTGTACA 58.332 47.619 11.67 0.00 33.07 2.90
2867 2951 3.250744 CGTCACTGGAATTCGTGTACAT 58.749 45.455 11.67 0.00 33.07 2.29
2868 2952 3.303495 CGTCACTGGAATTCGTGTACATC 59.697 47.826 11.67 0.00 33.07 3.06
2869 2953 3.303495 GTCACTGGAATTCGTGTACATCG 59.697 47.826 11.67 5.16 33.07 3.84
2870 2954 2.603110 CACTGGAATTCGTGTACATCGG 59.397 50.000 14.80 2.48 0.00 4.18
2871 2955 2.232941 ACTGGAATTCGTGTACATCGGT 59.767 45.455 14.80 2.77 0.00 4.69
2872 2956 2.858344 CTGGAATTCGTGTACATCGGTC 59.142 50.000 14.80 10.81 0.00 4.79
2873 2957 2.231721 TGGAATTCGTGTACATCGGTCA 59.768 45.455 14.80 6.67 0.00 4.02
2874 2958 3.118920 TGGAATTCGTGTACATCGGTCAT 60.119 43.478 14.80 5.62 0.00 3.06
2875 2959 3.245284 GGAATTCGTGTACATCGGTCATG 59.755 47.826 14.80 0.00 38.64 3.07
2876 2960 3.793797 ATTCGTGTACATCGGTCATGA 57.206 42.857 14.80 0.00 36.21 3.07
2877 2961 3.793797 TTCGTGTACATCGGTCATGAT 57.206 42.857 14.80 0.00 36.21 2.45
2878 2962 3.349488 TCGTGTACATCGGTCATGATC 57.651 47.619 14.80 0.00 36.21 2.92
2879 2963 2.685897 TCGTGTACATCGGTCATGATCA 59.314 45.455 6.80 0.00 36.21 2.92
2880 2964 3.317993 TCGTGTACATCGGTCATGATCAT 59.682 43.478 6.80 1.18 36.21 2.45
2881 2965 3.670523 CGTGTACATCGGTCATGATCATC 59.329 47.826 4.86 0.00 36.21 2.92
2882 2966 4.557496 CGTGTACATCGGTCATGATCATCT 60.557 45.833 4.86 0.00 36.21 2.90
2883 2967 5.334879 CGTGTACATCGGTCATGATCATCTA 60.335 44.000 4.86 0.00 36.21 1.98
2884 2968 5.859114 GTGTACATCGGTCATGATCATCTAC 59.141 44.000 4.86 7.17 36.21 2.59
2885 2969 4.166187 ACATCGGTCATGATCATCTACG 57.834 45.455 4.86 10.31 36.21 3.51
2895 2979 2.499693 TGATCATCTACGGGCAAGTTCA 59.500 45.455 0.00 0.00 0.00 3.18
2898 2982 2.499693 TCATCTACGGGCAAGTTCATCA 59.500 45.455 0.00 0.00 0.00 3.07
2900 2984 1.009829 CTACGGGCAAGTTCATCAGC 58.990 55.000 0.00 0.00 0.00 4.26
2901 2985 0.613260 TACGGGCAAGTTCATCAGCT 59.387 50.000 0.00 0.00 0.00 4.24
2911 2996 3.825328 AGTTCATCAGCTTGACCAGTTT 58.175 40.909 0.00 0.00 0.00 2.66
2917 3008 4.890158 TCAGCTTGACCAGTTTCATCTA 57.110 40.909 0.00 0.00 0.00 1.98
2918 3009 5.426689 TCAGCTTGACCAGTTTCATCTAT 57.573 39.130 0.00 0.00 0.00 1.98
2972 3063 3.093057 ACAGACACTACTGATGGAGGAC 58.907 50.000 0.00 0.00 40.63 3.85
2973 3064 2.098280 CAGACACTACTGATGGAGGACG 59.902 54.545 0.00 0.00 39.94 4.79
3035 3129 6.757010 ACGGTGTTCTAATCAGCTTACATTAG 59.243 38.462 9.31 9.31 34.93 1.73
3036 3130 6.757010 CGGTGTTCTAATCAGCTTACATTAGT 59.243 38.462 13.12 0.00 35.11 2.24
3037 3131 7.919091 CGGTGTTCTAATCAGCTTACATTAGTA 59.081 37.037 13.12 5.10 35.11 1.82
3078 3172 5.957796 GTGTGTATTAACTGCTATTGCGTTC 59.042 40.000 11.07 1.64 43.34 3.95
3088 3182 4.556233 TGCTATTGCGTTCGCTAGATTAT 58.444 39.130 17.63 5.19 43.34 1.28
3115 3209 4.577693 TCATGATGCTTGTAAATGAGGAGC 59.422 41.667 0.00 0.00 0.00 4.70
3130 3224 0.392461 GGAGCGTGCCACCTGATTTA 60.392 55.000 0.00 0.00 0.00 1.40
3179 3283 5.052481 TCTGTCAAGAAGATGTGTTGTGAG 58.948 41.667 0.00 0.00 32.34 3.51
3180 3284 4.769688 TGTCAAGAAGATGTGTTGTGAGT 58.230 39.130 0.00 0.00 32.34 3.41
3181 3285 4.571984 TGTCAAGAAGATGTGTTGTGAGTG 59.428 41.667 0.00 0.00 32.34 3.51
3182 3286 4.572389 GTCAAGAAGATGTGTTGTGAGTGT 59.428 41.667 0.00 0.00 32.34 3.55
3183 3287 4.571984 TCAAGAAGATGTGTTGTGAGTGTG 59.428 41.667 0.00 0.00 32.34 3.82
3184 3288 4.406648 AGAAGATGTGTTGTGAGTGTGA 57.593 40.909 0.00 0.00 0.00 3.58
3192 3296 0.757561 TTGTGAGTGTGACCCGGAGA 60.758 55.000 0.73 0.00 0.00 3.71
3228 3332 5.700373 GCATTGCTGTTCCCAAAGAAATTTA 59.300 36.000 0.16 0.00 35.85 1.40
3282 3386 1.067364 TGCTTTTGTGATGCACACTGG 59.933 47.619 16.70 8.16 44.47 4.00
3286 3390 1.825090 TTGTGATGCACACTGGGATC 58.175 50.000 16.70 0.00 44.47 3.36
3314 3418 5.455392 CATTCTTTTGTGTGGAGACATCAC 58.545 41.667 0.00 0.00 46.14 3.06
3330 3434 3.432252 ACATCACGTGAAATTCGGAGAAC 59.568 43.478 24.13 0.00 45.90 3.01
3345 3449 1.206072 GAACTGCACTCAAGCTGCG 59.794 57.895 0.00 0.00 37.46 5.18
3358 3462 1.725973 GCTGCGGCGTGAAAAGAAC 60.726 57.895 9.37 0.00 0.00 3.01
3365 3469 3.785505 GCGGCGTGAAAAGAACTATGATG 60.786 47.826 9.37 0.00 0.00 3.07
3366 3470 3.685058 GGCGTGAAAAGAACTATGATGC 58.315 45.455 0.00 0.00 0.00 3.91
3367 3471 3.375299 GGCGTGAAAAGAACTATGATGCT 59.625 43.478 0.00 0.00 0.00 3.79
3368 3472 4.337763 GCGTGAAAAGAACTATGATGCTG 58.662 43.478 0.00 0.00 0.00 4.41
3369 3473 4.142816 GCGTGAAAAGAACTATGATGCTGT 60.143 41.667 0.00 0.00 0.00 4.40
3370 3474 5.617751 GCGTGAAAAGAACTATGATGCTGTT 60.618 40.000 0.00 0.00 0.00 3.16
3371 3475 6.402118 GCGTGAAAAGAACTATGATGCTGTTA 60.402 38.462 0.00 0.00 0.00 2.41
3372 3476 7.677276 GCGTGAAAAGAACTATGATGCTGTTAT 60.677 37.037 0.00 0.00 0.00 1.89
3373 3477 8.817100 CGTGAAAAGAACTATGATGCTGTTATA 58.183 33.333 0.00 0.00 0.00 0.98
3387 3491 9.750125 TGATGCTGTTATATTTAGTACTGACAG 57.250 33.333 5.39 0.00 37.05 3.51
3388 3492 9.751542 GATGCTGTTATATTTAGTACTGACAGT 57.248 33.333 13.68 13.68 36.53 3.55
3395 3499 9.991906 TTATATTTAGTACTGACAGTAATGGCC 57.008 33.333 22.46 8.59 31.62 5.36
3396 3500 6.561519 ATTTAGTACTGACAGTAATGGCCT 57.438 37.500 22.46 14.60 31.62 5.19
3397 3501 6.368779 TTTAGTACTGACAGTAATGGCCTT 57.631 37.500 22.46 0.00 31.62 4.35
3398 3502 4.910458 AGTACTGACAGTAATGGCCTTT 57.090 40.909 16.84 6.72 31.62 3.11
3399 3503 5.242795 AGTACTGACAGTAATGGCCTTTT 57.757 39.130 16.84 2.91 31.62 2.27
3400 3504 5.631119 AGTACTGACAGTAATGGCCTTTTT 58.369 37.500 16.84 0.25 31.62 1.94
3401 3505 4.853924 ACTGACAGTAATGGCCTTTTTG 57.146 40.909 6.24 10.81 0.00 2.44
3402 3506 4.469657 ACTGACAGTAATGGCCTTTTTGA 58.530 39.130 6.24 0.00 0.00 2.69
3403 3507 5.079643 ACTGACAGTAATGGCCTTTTTGAT 58.920 37.500 6.24 1.13 0.00 2.57
3420 3524 1.677576 TGATCCGCATGATTCCAAAGC 59.322 47.619 0.00 0.00 32.41 3.51
3422 3526 0.323269 TCCGCATGATTCCAAAGCCA 60.323 50.000 0.00 0.00 0.00 4.75
3426 3530 2.880268 CGCATGATTCCAAAGCCATAGA 59.120 45.455 0.00 0.00 0.00 1.98
3433 3537 7.060383 TGATTCCAAAGCCATAGAAACAAAA 57.940 32.000 0.00 0.00 0.00 2.44
3434 3538 6.928492 TGATTCCAAAGCCATAGAAACAAAAC 59.072 34.615 0.00 0.00 0.00 2.43
3436 3540 6.227298 TCCAAAGCCATAGAAACAAAACAA 57.773 33.333 0.00 0.00 0.00 2.83
3437 3541 6.825610 TCCAAAGCCATAGAAACAAAACAAT 58.174 32.000 0.00 0.00 0.00 2.71
3465 3569 5.669477 ACATGGCATTTTATTTTATGGCGT 58.331 33.333 0.00 0.00 46.79 5.68
3469 3573 5.105752 GGCATTTTATTTTATGGCGTGTCA 58.894 37.500 0.00 0.00 37.54 3.58
3511 3617 8.420374 AATACAAATGACTATGTAACAGACGG 57.580 34.615 0.00 0.00 35.79 4.79
3512 3618 4.630069 ACAAATGACTATGTAACAGACGGC 59.370 41.667 0.00 0.00 0.00 5.68
3522 3628 1.027792 AACAGACGGCGTTTGGTTGT 61.028 50.000 30.18 18.64 0.00 3.32
3525 3631 1.127951 CAGACGGCGTTTGGTTGTATC 59.872 52.381 21.46 1.24 0.00 2.24
3526 3632 1.149987 GACGGCGTTTGGTTGTATCA 58.850 50.000 16.19 0.00 0.00 2.15
3544 4097 6.136155 TGTATCAGAGAGAGAGAGAGAGAGA 58.864 44.000 0.00 0.00 0.00 3.10
3545 4098 5.804944 ATCAGAGAGAGAGAGAGAGAGAG 57.195 47.826 0.00 0.00 0.00 3.20
3546 4099 4.871822 TCAGAGAGAGAGAGAGAGAGAGA 58.128 47.826 0.00 0.00 0.00 3.10
3547 4100 4.892345 TCAGAGAGAGAGAGAGAGAGAGAG 59.108 50.000 0.00 0.00 0.00 3.20
3548 4101 3.640967 AGAGAGAGAGAGAGAGAGAGAGC 59.359 52.174 0.00 0.00 0.00 4.09
3549 4102 3.378512 AGAGAGAGAGAGAGAGAGAGCA 58.621 50.000 0.00 0.00 0.00 4.26
3550 4103 3.387374 AGAGAGAGAGAGAGAGAGAGCAG 59.613 52.174 0.00 0.00 0.00 4.24
3551 4104 2.437281 AGAGAGAGAGAGAGAGAGCAGG 59.563 54.545 0.00 0.00 0.00 4.85
3552 4105 2.171448 GAGAGAGAGAGAGAGAGCAGGT 59.829 54.545 0.00 0.00 0.00 4.00
3553 4106 2.578021 AGAGAGAGAGAGAGAGCAGGTT 59.422 50.000 0.00 0.00 0.00 3.50
3554 4107 3.010584 AGAGAGAGAGAGAGAGCAGGTTT 59.989 47.826 0.00 0.00 0.00 3.27
3555 4108 3.763897 GAGAGAGAGAGAGAGCAGGTTTT 59.236 47.826 0.00 0.00 0.00 2.43
3556 4109 4.159557 AGAGAGAGAGAGAGCAGGTTTTT 58.840 43.478 0.00 0.00 0.00 1.94
3557 4110 4.220602 AGAGAGAGAGAGAGCAGGTTTTTC 59.779 45.833 0.00 0.00 0.00 2.29
3558 4111 4.159557 AGAGAGAGAGAGCAGGTTTTTCT 58.840 43.478 0.00 0.00 0.00 2.52
3559 4112 4.592778 AGAGAGAGAGAGCAGGTTTTTCTT 59.407 41.667 0.00 0.00 0.00 2.52
3560 4113 5.071653 AGAGAGAGAGAGCAGGTTTTTCTTT 59.928 40.000 0.00 0.00 0.00 2.52
3561 4114 6.268847 AGAGAGAGAGAGCAGGTTTTTCTTTA 59.731 38.462 0.00 0.00 0.00 1.85
3562 4115 6.831976 AGAGAGAGAGCAGGTTTTTCTTTAA 58.168 36.000 0.00 0.00 0.00 1.52
3563 4116 6.934083 AGAGAGAGAGCAGGTTTTTCTTTAAG 59.066 38.462 0.00 0.00 0.00 1.85
3564 4117 6.000840 AGAGAGAGCAGGTTTTTCTTTAAGG 58.999 40.000 0.00 0.00 0.00 2.69
3565 4118 5.941788 AGAGAGCAGGTTTTTCTTTAAGGA 58.058 37.500 0.00 0.00 0.00 3.36
3566 4119 5.765677 AGAGAGCAGGTTTTTCTTTAAGGAC 59.234 40.000 0.00 0.00 0.00 3.85
3567 4120 4.827835 AGAGCAGGTTTTTCTTTAAGGACC 59.172 41.667 0.00 0.00 0.00 4.46
3568 4121 4.542697 AGCAGGTTTTTCTTTAAGGACCA 58.457 39.130 0.00 0.00 0.00 4.02
3569 4122 4.584743 AGCAGGTTTTTCTTTAAGGACCAG 59.415 41.667 0.00 4.30 0.00 4.00
3570 4123 4.341235 GCAGGTTTTTCTTTAAGGACCAGT 59.659 41.667 0.00 0.00 0.00 4.00
3571 4124 5.163447 GCAGGTTTTTCTTTAAGGACCAGTT 60.163 40.000 0.00 0.00 0.00 3.16
3572 4125 6.504398 CAGGTTTTTCTTTAAGGACCAGTTC 58.496 40.000 0.00 0.00 0.00 3.01
3573 4126 6.321435 CAGGTTTTTCTTTAAGGACCAGTTCT 59.679 38.462 0.00 0.00 0.00 3.01
3574 4127 6.895756 AGGTTTTTCTTTAAGGACCAGTTCTT 59.104 34.615 0.00 0.00 0.00 2.52
3575 4128 7.399191 AGGTTTTTCTTTAAGGACCAGTTCTTT 59.601 33.333 0.00 0.00 0.00 2.52
3576 4129 7.491372 GGTTTTTCTTTAAGGACCAGTTCTTTG 59.509 37.037 0.00 0.00 0.00 2.77
3577 4130 5.767816 TTCTTTAAGGACCAGTTCTTTGC 57.232 39.130 0.00 0.00 0.00 3.68
3578 4131 4.787551 TCTTTAAGGACCAGTTCTTTGCA 58.212 39.130 0.00 0.00 0.00 4.08
3579 4132 5.197451 TCTTTAAGGACCAGTTCTTTGCAA 58.803 37.500 0.00 0.00 0.00 4.08
3580 4133 4.911514 TTAAGGACCAGTTCTTTGCAAC 57.088 40.909 0.00 0.00 0.00 4.17
3581 4134 2.435372 AGGACCAGTTCTTTGCAACA 57.565 45.000 0.00 0.00 0.00 3.33
3582 4135 2.733956 AGGACCAGTTCTTTGCAACAA 58.266 42.857 0.00 0.00 0.00 2.83
3583 4136 3.299503 AGGACCAGTTCTTTGCAACAAT 58.700 40.909 0.00 0.00 0.00 2.71
3584 4137 3.706086 AGGACCAGTTCTTTGCAACAATT 59.294 39.130 0.00 0.00 0.00 2.32
3585 4138 3.803778 GGACCAGTTCTTTGCAACAATTG 59.196 43.478 3.24 3.24 0.00 2.32
3586 4139 4.432712 GACCAGTTCTTTGCAACAATTGT 58.567 39.130 4.92 4.92 0.00 2.71
3587 4140 4.432712 ACCAGTTCTTTGCAACAATTGTC 58.567 39.130 12.39 0.49 0.00 3.18
3588 4141 4.081752 ACCAGTTCTTTGCAACAATTGTCA 60.082 37.500 12.39 3.52 0.00 3.58
3589 4142 5.051816 CCAGTTCTTTGCAACAATTGTCAT 58.948 37.500 12.39 0.00 0.00 3.06
3590 4143 5.176223 CCAGTTCTTTGCAACAATTGTCATC 59.824 40.000 12.39 4.76 0.00 2.92
3591 4144 4.977963 AGTTCTTTGCAACAATTGTCATCG 59.022 37.500 12.39 2.38 0.00 3.84
3592 4145 4.827304 TCTTTGCAACAATTGTCATCGA 57.173 36.364 12.39 3.70 0.00 3.59
3593 4146 5.375417 TCTTTGCAACAATTGTCATCGAT 57.625 34.783 12.39 0.00 0.00 3.59
3594 4147 6.493449 TCTTTGCAACAATTGTCATCGATA 57.507 33.333 12.39 0.00 0.00 2.92
3595 4148 6.314018 TCTTTGCAACAATTGTCATCGATAC 58.686 36.000 12.39 0.00 0.00 2.24
3596 4149 5.619625 TTGCAACAATTGTCATCGATACA 57.380 34.783 12.39 0.47 0.00 2.29
3597 4150 5.619625 TGCAACAATTGTCATCGATACAA 57.380 34.783 12.39 17.08 40.85 2.41
3598 4151 6.006759 TGCAACAATTGTCATCGATACAAA 57.993 33.333 12.39 6.46 40.05 2.83
3599 4152 6.085573 TGCAACAATTGTCATCGATACAAAG 58.914 36.000 12.39 16.08 40.05 2.77
3600 4153 5.512788 GCAACAATTGTCATCGATACAAAGG 59.487 40.000 12.39 15.66 40.05 3.11
3601 4154 6.611381 CAACAATTGTCATCGATACAAAGGT 58.389 36.000 12.39 16.07 40.05 3.50
3602 4155 7.625395 GCAACAATTGTCATCGATACAAAGGTA 60.625 37.037 12.39 3.21 40.05 3.08
3603 4156 7.539712 ACAATTGTCATCGATACAAAGGTAG 57.460 36.000 18.06 11.65 40.05 3.18
3618 4171 5.897250 ACAAAGGTAGTTTTCCATGAGGTTT 59.103 36.000 0.00 0.00 35.89 3.27
3620 4173 5.319043 AGGTAGTTTTCCATGAGGTTTGA 57.681 39.130 0.00 0.00 35.89 2.69
3628 4181 7.505585 AGTTTTCCATGAGGTTTGACTTAATGA 59.494 33.333 0.00 0.00 35.89 2.57
3629 4182 7.831691 TTTCCATGAGGTTTGACTTAATGAA 57.168 32.000 0.00 0.00 35.89 2.57
3630 4183 7.831691 TTCCATGAGGTTTGACTTAATGAAA 57.168 32.000 0.00 0.00 35.89 2.69
3631 4184 7.831691 TCCATGAGGTTTGACTTAATGAAAA 57.168 32.000 0.00 0.00 35.89 2.29
3632 4185 8.243961 TCCATGAGGTTTGACTTAATGAAAAA 57.756 30.769 0.00 0.00 35.89 1.94
3709 4286 0.028770 CAAACGAGCTCCGCAACAAA 59.971 50.000 8.47 0.00 43.32 2.83
3713 4290 0.516877 CGAGCTCCGCAACAAATCAA 59.483 50.000 8.47 0.00 0.00 2.57
3714 4291 1.069296 CGAGCTCCGCAACAAATCAAA 60.069 47.619 8.47 0.00 0.00 2.69
3729 4306 8.492748 CAACAAATCAAATGATGTTCCTTTCAG 58.507 33.333 0.00 0.00 34.49 3.02
3744 4321 7.013274 TGTTCCTTTCAGTCAAATAGTTCCTTG 59.987 37.037 0.00 0.00 0.00 3.61
3754 4331 7.869429 AGTCAAATAGTTCCTTGCAGAAATTTG 59.131 33.333 14.11 14.11 36.34 2.32
3772 4349 6.603237 AATTTGGTTGCAAGCTTTCTAAAC 57.397 33.333 27.31 0.00 0.00 2.01
3779 4358 5.772825 TGCAAGCTTTCTAAACTGTCATT 57.227 34.783 0.00 0.00 0.00 2.57
3803 4382 2.553602 TGTGTGACCAGATGCAAATCAC 59.446 45.455 10.51 10.51 40.08 3.06
3827 4406 7.350110 CTCTCAAAAGAGTCATTTCTGAGAC 57.650 40.000 7.93 0.00 43.52 3.36
3838 4417 8.994429 AGTCATTTCTGAGACTAACATAGTTG 57.006 34.615 0.00 0.00 42.92 3.16
3842 4421 5.939764 TCTGAGACTAACATAGTTGCCAT 57.060 39.130 0.00 0.00 39.59 4.40
3863 4442 5.530915 CCATCACACAGGTTAGACAAAGAAA 59.469 40.000 0.00 0.00 0.00 2.52
3865 4444 7.390440 CCATCACACAGGTTAGACAAAGAAATA 59.610 37.037 0.00 0.00 0.00 1.40
3870 4449 8.157476 ACACAGGTTAGACAAAGAAATACATCT 58.843 33.333 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 2.347490 CCCTTGGTCCACTCCACG 59.653 66.667 0.00 0.00 37.20 4.94
52 53 1.017387 CAAGGCAGGGAATAACTCGC 58.983 55.000 0.00 0.00 37.26 5.03
119 140 0.900421 ACTGGTAACCGCCTCTTACC 59.100 55.000 5.32 5.32 42.49 2.85
172 193 3.661944 AGTTTCAGTGTGCATGAGAGAG 58.338 45.455 0.00 0.00 0.00 3.20
208 229 7.096885 GCACAAGATTAATAATGCGTGTTGATC 60.097 37.037 0.00 0.00 0.00 2.92
255 276 4.792068 CCCTCAAATTAGCACCATTAGGA 58.208 43.478 0.00 0.00 38.69 2.94
296 317 1.409064 TGACCACAGACATCTATCCGC 59.591 52.381 0.00 0.00 0.00 5.54
314 335 7.503521 TGCACAAACAGACTATTATTGTTGA 57.496 32.000 0.00 0.00 35.39 3.18
316 337 6.808212 GCATGCACAAACAGACTATTATTGTT 59.192 34.615 14.21 0.00 36.66 2.83
342 375 5.665916 AACTTTCTGCCCTAAATCCAATG 57.334 39.130 0.00 0.00 0.00 2.82
346 379 6.835819 ACTTAAACTTTCTGCCCTAAATCC 57.164 37.500 0.00 0.00 0.00 3.01
360 404 3.387699 AGCAATGTGGCCAACTTAAACTT 59.612 39.130 7.24 0.00 0.00 2.66
392 436 6.182039 TCATGCAATAAGGAAAAGAGAACG 57.818 37.500 0.00 0.00 0.00 3.95
434 478 0.895530 GGCTGTCCCGCTATATGCTA 59.104 55.000 0.00 0.00 40.11 3.49
437 481 0.969149 TCAGGCTGTCCCGCTATATG 59.031 55.000 15.27 0.00 39.21 1.78
444 488 1.079543 CTCTTGTCAGGCTGTCCCG 60.080 63.158 15.27 2.90 39.21 5.14
543 587 0.995024 CTTCAGAAGGTGGATGGGGT 59.005 55.000 1.69 0.00 0.00 4.95
679 738 5.664457 TGTATGCATAGACAGGAGAAACTG 58.336 41.667 6.67 0.00 44.03 3.16
801 860 8.270744 AGAGTTCAGAAGCAAAGGTATTATCAT 58.729 33.333 0.00 0.00 0.00 2.45
802 861 7.624549 AGAGTTCAGAAGCAAAGGTATTATCA 58.375 34.615 0.00 0.00 0.00 2.15
803 862 8.394121 CAAGAGTTCAGAAGCAAAGGTATTATC 58.606 37.037 0.00 0.00 0.00 1.75
804 863 7.148171 GCAAGAGTTCAGAAGCAAAGGTATTAT 60.148 37.037 0.00 0.00 0.00 1.28
805 864 6.149474 GCAAGAGTTCAGAAGCAAAGGTATTA 59.851 38.462 0.00 0.00 0.00 0.98
806 865 5.048434 GCAAGAGTTCAGAAGCAAAGGTATT 60.048 40.000 0.00 0.00 0.00 1.89
835 894 7.554476 AGGAAGTAAGATAAAGCAGATGGTTTC 59.446 37.037 12.84 1.36 43.68 2.78
849 908 5.178797 GCTTCAAGTGCAGGAAGTAAGATA 58.821 41.667 18.57 0.00 41.93 1.98
941 1005 5.277683 CCATAAAGAGCTCGTCAAATCATGG 60.278 44.000 8.37 9.75 0.00 3.66
962 1026 4.904853 GGATCTCTTCTCCTCCTAAACCAT 59.095 45.833 0.00 0.00 0.00 3.55
1140 1211 2.032528 TTGCCACTGCCGGAGAAG 59.967 61.111 5.05 0.73 36.33 2.85
1281 1352 7.033185 GTGCGACCTAAACAATATCCAAAATT 58.967 34.615 0.00 0.00 0.00 1.82
1287 1358 5.065988 ACATTGTGCGACCTAAACAATATCC 59.934 40.000 0.35 0.00 41.39 2.59
1306 1377 6.017605 GTCATGGAAGCTATAGGACAACATTG 60.018 42.308 1.04 0.00 0.00 2.82
1315 1386 4.592485 AGAACGTCATGGAAGCTATAGG 57.408 45.455 1.04 0.00 0.00 2.57
1319 1390 3.745975 CACAAAGAACGTCATGGAAGCTA 59.254 43.478 0.00 0.00 0.00 3.32
1322 1393 3.312421 ACACACAAAGAACGTCATGGAAG 59.688 43.478 0.00 0.00 0.00 3.46
1324 1395 2.912771 ACACACAAAGAACGTCATGGA 58.087 42.857 0.00 0.00 0.00 3.41
1325 1396 3.064682 TGAACACACAAAGAACGTCATGG 59.935 43.478 0.00 0.00 0.00 3.66
1328 1399 3.331150 ACTGAACACACAAAGAACGTCA 58.669 40.909 0.00 0.00 0.00 4.35
1329 1400 4.336532 AACTGAACACACAAAGAACGTC 57.663 40.909 0.00 0.00 0.00 4.34
1330 1401 4.933400 ACTAACTGAACACACAAAGAACGT 59.067 37.500 0.00 0.00 0.00 3.99
1331 1402 5.291128 AGACTAACTGAACACACAAAGAACG 59.709 40.000 0.00 0.00 0.00 3.95
1332 1403 6.663944 AGACTAACTGAACACACAAAGAAC 57.336 37.500 0.00 0.00 0.00 3.01
1333 1404 7.064609 CAGAAGACTAACTGAACACACAAAGAA 59.935 37.037 4.23 0.00 36.38 2.52
1334 1405 6.535150 CAGAAGACTAACTGAACACACAAAGA 59.465 38.462 4.23 0.00 36.38 2.52
1335 1406 6.709643 CAGAAGACTAACTGAACACACAAAG 58.290 40.000 4.23 0.00 36.38 2.77
1336 1407 5.064707 GCAGAAGACTAACTGAACACACAAA 59.935 40.000 12.01 0.00 36.38 2.83
1337 1408 4.570772 GCAGAAGACTAACTGAACACACAA 59.429 41.667 12.01 0.00 36.38 3.33
1338 1409 4.119862 GCAGAAGACTAACTGAACACACA 58.880 43.478 12.01 0.00 36.38 3.72
1339 1410 4.119862 TGCAGAAGACTAACTGAACACAC 58.880 43.478 12.01 0.00 36.38 3.82
1340 1411 4.141937 ACTGCAGAAGACTAACTGAACACA 60.142 41.667 23.35 2.38 36.38 3.72
1341 1412 4.372656 ACTGCAGAAGACTAACTGAACAC 58.627 43.478 23.35 0.00 36.38 3.32
1342 1413 4.672587 ACTGCAGAAGACTAACTGAACA 57.327 40.909 23.35 3.17 36.38 3.18
1343 1414 5.993106 AAACTGCAGAAGACTAACTGAAC 57.007 39.130 23.35 0.00 36.38 3.18
1356 1427 3.609853 ACACACTGAGAAAAACTGCAGA 58.390 40.909 23.35 0.00 32.37 4.26
1357 1428 4.332543 TGTACACACTGAGAAAAACTGCAG 59.667 41.667 13.48 13.48 33.37 4.41
1372 1443 6.663944 AAGTTCAGAAGAAAGTGTACACAC 57.336 37.500 27.06 17.03 46.77 3.82
1381 1452 6.630071 TCCCAACAAAAAGTTCAGAAGAAAG 58.370 36.000 0.00 0.00 38.74 2.62
1385 1457 5.965922 AGTTCCCAACAAAAAGTTCAGAAG 58.034 37.500 0.00 0.00 38.74 2.85
1388 1460 5.109210 GGAAGTTCCCAACAAAAAGTTCAG 58.891 41.667 11.17 0.00 38.74 3.02
1419 1493 6.991485 AAAAACGTGCAGATTATCAACAAG 57.009 33.333 0.00 0.00 0.00 3.16
1568 1642 3.129871 GAGAAAGATCGGATTGCAGAGG 58.870 50.000 0.00 0.00 0.00 3.69
1631 1705 4.396357 ACAAACATTATGGGACCTGGAA 57.604 40.909 0.00 0.00 0.00 3.53
1633 1707 4.344104 AGAACAAACATTATGGGACCTGG 58.656 43.478 0.00 0.00 0.00 4.45
1684 1758 5.880332 AGAAAAACTGCACAAGACTAACTGA 59.120 36.000 0.00 0.00 0.00 3.41
1767 1841 7.061752 ACTTCATTACTAAAACGTGCAGATC 57.938 36.000 0.00 0.00 0.00 2.75
1861 1935 2.548493 GCAATCCTGCCACACACAAAAT 60.548 45.455 0.00 0.00 43.26 1.82
1990 2066 9.920946 AATGGAAGATTATTAGCTAAAACCAGA 57.079 29.630 10.85 0.00 0.00 3.86
2240 2316 6.126825 ACAGAGGAATGCAGAGTTTCATATCT 60.127 38.462 0.00 0.00 0.00 1.98
2241 2317 6.018098 CACAGAGGAATGCAGAGTTTCATATC 60.018 42.308 0.00 0.00 0.00 1.63
2351 2429 4.100529 CGGACAAATCAATGCATCTTGTC 58.899 43.478 22.89 22.89 43.24 3.18
2383 2461 8.572855 AAAGAAAGAGTTCTGATAAAGGATGG 57.427 34.615 0.00 0.00 43.59 3.51
2411 2489 4.188462 CTCAACTCTTTACCACACACACA 58.812 43.478 0.00 0.00 0.00 3.72
2412 2490 4.189231 ACTCAACTCTTTACCACACACAC 58.811 43.478 0.00 0.00 0.00 3.82
2414 2492 5.813080 AAACTCAACTCTTTACCACACAC 57.187 39.130 0.00 0.00 0.00 3.82
2416 2494 6.431198 TCAAAACTCAACTCTTTACCACAC 57.569 37.500 0.00 0.00 0.00 3.82
2418 2496 6.262273 TCCATCAAAACTCAACTCTTTACCAC 59.738 38.462 0.00 0.00 0.00 4.16
2420 2498 6.486993 ACTCCATCAAAACTCAACTCTTTACC 59.513 38.462 0.00 0.00 0.00 2.85
2426 2505 5.529060 ACAGAACTCCATCAAAACTCAACTC 59.471 40.000 0.00 0.00 0.00 3.01
2433 2512 5.712152 AATCCACAGAACTCCATCAAAAC 57.288 39.130 0.00 0.00 0.00 2.43
2447 2526 8.737168 TCCTGTATTCAGAATTAAATCCACAG 57.263 34.615 0.00 6.94 43.76 3.66
2457 2536 5.748402 TGTGCATCTCCTGTATTCAGAATT 58.252 37.500 0.00 0.00 43.76 2.17
2464 2543 4.162888 TCTGACATGTGCATCTCCTGTATT 59.837 41.667 1.15 0.00 0.00 1.89
2465 2544 3.708121 TCTGACATGTGCATCTCCTGTAT 59.292 43.478 1.15 0.00 0.00 2.29
2466 2545 3.099141 TCTGACATGTGCATCTCCTGTA 58.901 45.455 1.15 0.00 0.00 2.74
2573 2652 4.021719 ACAAGCAAATTCATCAAGGGTGAG 60.022 41.667 0.00 0.00 37.14 3.51
2656 2735 0.832135 ACAGAGGGAACAGCTTCGGA 60.832 55.000 0.00 0.00 0.00 4.55
2839 2918 2.417719 GAATTCCAGTGACGCTCAGTT 58.582 47.619 0.00 0.00 0.00 3.16
2841 2920 0.994995 CGAATTCCAGTGACGCTCAG 59.005 55.000 0.00 0.00 0.00 3.35
2842 2921 0.317160 ACGAATTCCAGTGACGCTCA 59.683 50.000 0.00 0.00 0.00 4.26
2843 2922 0.716108 CACGAATTCCAGTGACGCTC 59.284 55.000 7.49 0.00 40.56 5.03
2844 2923 0.033504 ACACGAATTCCAGTGACGCT 59.966 50.000 17.20 0.00 40.56 5.07
2851 2935 2.858344 GACCGATGTACACGAATTCCAG 59.142 50.000 16.14 0.00 0.00 3.86
2858 2942 2.685897 TGATCATGACCGATGTACACGA 59.314 45.455 16.14 1.34 33.29 4.35
2863 2947 4.156008 CCGTAGATGATCATGACCGATGTA 59.844 45.833 14.30 0.00 33.29 2.29
2864 2948 3.057245 CCGTAGATGATCATGACCGATGT 60.057 47.826 14.30 0.00 33.29 3.06
2865 2949 3.505836 CCGTAGATGATCATGACCGATG 58.494 50.000 14.30 0.82 0.00 3.84
2866 2950 2.493675 CCCGTAGATGATCATGACCGAT 59.506 50.000 14.30 0.00 0.00 4.18
2867 2951 1.886542 CCCGTAGATGATCATGACCGA 59.113 52.381 14.30 0.00 0.00 4.69
2868 2952 1.670087 GCCCGTAGATGATCATGACCG 60.670 57.143 14.30 11.22 0.00 4.79
2869 2953 1.344438 TGCCCGTAGATGATCATGACC 59.656 52.381 14.30 0.00 0.00 4.02
2870 2954 2.820059 TGCCCGTAGATGATCATGAC 57.180 50.000 14.30 9.90 0.00 3.06
2871 2955 2.700371 ACTTGCCCGTAGATGATCATGA 59.300 45.455 14.30 0.00 0.00 3.07
2872 2956 3.117491 ACTTGCCCGTAGATGATCATG 57.883 47.619 14.30 0.00 0.00 3.07
2873 2957 3.134623 TGAACTTGCCCGTAGATGATCAT 59.865 43.478 8.25 8.25 0.00 2.45
2874 2958 2.499693 TGAACTTGCCCGTAGATGATCA 59.500 45.455 0.00 0.00 0.00 2.92
2875 2959 3.179443 TGAACTTGCCCGTAGATGATC 57.821 47.619 0.00 0.00 0.00 2.92
2876 2960 3.134623 TGATGAACTTGCCCGTAGATGAT 59.865 43.478 0.00 0.00 0.00 2.45
2877 2961 2.499693 TGATGAACTTGCCCGTAGATGA 59.500 45.455 0.00 0.00 0.00 2.92
2878 2962 2.868583 CTGATGAACTTGCCCGTAGATG 59.131 50.000 0.00 0.00 0.00 2.90
2879 2963 2.743183 GCTGATGAACTTGCCCGTAGAT 60.743 50.000 0.00 0.00 0.00 1.98
2880 2964 1.405526 GCTGATGAACTTGCCCGTAGA 60.406 52.381 0.00 0.00 0.00 2.59
2881 2965 1.009829 GCTGATGAACTTGCCCGTAG 58.990 55.000 0.00 0.00 0.00 3.51
2882 2966 0.613260 AGCTGATGAACTTGCCCGTA 59.387 50.000 0.00 0.00 0.00 4.02
2883 2967 0.250901 AAGCTGATGAACTTGCCCGT 60.251 50.000 0.00 0.00 0.00 5.28
2884 2968 0.169672 CAAGCTGATGAACTTGCCCG 59.830 55.000 0.00 0.00 37.11 6.13
2885 2969 1.200948 GTCAAGCTGATGAACTTGCCC 59.799 52.381 0.00 0.00 42.41 5.36
2895 2979 4.298103 AGATGAAACTGGTCAAGCTGAT 57.702 40.909 0.00 0.00 0.00 2.90
2898 2982 5.426504 CAGATAGATGAAACTGGTCAAGCT 58.573 41.667 0.00 0.00 0.00 3.74
2900 2984 5.181009 TGCAGATAGATGAAACTGGTCAAG 58.819 41.667 0.00 0.00 0.00 3.02
2901 2985 5.046376 TCTGCAGATAGATGAAACTGGTCAA 60.046 40.000 13.74 0.00 0.00 3.18
2911 2996 5.364735 TGTCCTGAAATCTGCAGATAGATGA 59.635 40.000 28.92 18.00 37.48 2.92
2917 3008 2.950309 GCATGTCCTGAAATCTGCAGAT 59.050 45.455 23.75 23.75 35.39 2.90
2918 3009 2.290450 TGCATGTCCTGAAATCTGCAGA 60.290 45.455 20.79 20.79 34.92 4.26
2972 3063 1.227497 GGGAAGCTCTGCTCATCCG 60.227 63.158 0.00 0.00 38.25 4.18
2973 3064 0.179051 CAGGGAAGCTCTGCTCATCC 60.179 60.000 0.00 2.58 38.25 3.51
3042 3136 7.224753 GCAGTTAATACACACAGTGCAGTATAT 59.775 37.037 15.84 10.65 36.98 0.86
3043 3137 6.533723 GCAGTTAATACACACAGTGCAGTATA 59.466 38.462 15.84 3.54 36.98 1.47
3046 3140 3.498397 GCAGTTAATACACACAGTGCAGT 59.502 43.478 0.00 2.30 36.98 4.40
3047 3141 3.748048 AGCAGTTAATACACACAGTGCAG 59.252 43.478 0.00 0.00 36.98 4.41
3050 3144 6.250819 GCAATAGCAGTTAATACACACAGTG 58.749 40.000 0.00 0.00 41.58 3.66
3051 3145 5.063438 CGCAATAGCAGTTAATACACACAGT 59.937 40.000 0.00 0.00 42.27 3.55
3052 3146 5.063438 ACGCAATAGCAGTTAATACACACAG 59.937 40.000 0.00 0.00 42.27 3.66
3053 3147 4.932799 ACGCAATAGCAGTTAATACACACA 59.067 37.500 0.00 0.00 42.27 3.72
3054 3148 5.464965 ACGCAATAGCAGTTAATACACAC 57.535 39.130 0.00 0.00 42.27 3.82
3055 3149 5.220322 CGAACGCAATAGCAGTTAATACACA 60.220 40.000 0.00 0.00 42.27 3.72
3056 3150 5.188194 CGAACGCAATAGCAGTTAATACAC 58.812 41.667 0.00 0.00 42.27 2.90
3057 3151 4.260051 GCGAACGCAATAGCAGTTAATACA 60.260 41.667 14.26 0.00 42.27 2.29
3078 3172 6.477669 AGCATCATGAAACATAATCTAGCG 57.522 37.500 0.00 0.00 0.00 4.26
3088 3182 6.433716 TCCTCATTTACAAGCATCATGAAACA 59.566 34.615 0.00 0.00 0.00 2.83
3115 3209 1.202177 GCACATAAATCAGGTGGCACG 60.202 52.381 12.17 0.00 39.36 5.34
3130 3224 2.269940 AGGTAGTTCCTCAAGGCACAT 58.730 47.619 1.71 0.00 44.42 3.21
3179 3283 1.134788 CATAACCTCTCCGGGTCACAC 60.135 57.143 0.00 0.00 38.87 3.82
3180 3284 1.191535 CATAACCTCTCCGGGTCACA 58.808 55.000 0.00 0.00 38.87 3.58
3181 3285 0.179081 GCATAACCTCTCCGGGTCAC 60.179 60.000 0.00 0.00 38.87 3.67
3182 3286 1.335132 GGCATAACCTCTCCGGGTCA 61.335 60.000 0.00 0.00 38.87 4.02
3183 3287 1.446366 GGCATAACCTCTCCGGGTC 59.554 63.158 0.00 0.00 38.87 4.46
3184 3288 3.643398 GGCATAACCTCTCCGGGT 58.357 61.111 0.00 0.00 42.05 5.28
3282 3386 2.095059 ACACAAAAGAATGCAGCGATCC 60.095 45.455 0.00 0.00 0.00 3.36
3286 3390 1.001487 TCCACACAAAAGAATGCAGCG 60.001 47.619 0.00 0.00 0.00 5.18
3314 3418 1.798223 TGCAGTTCTCCGAATTTCACG 59.202 47.619 0.00 0.00 0.00 4.35
3330 3434 4.099170 GCCGCAGCTTGAGTGCAG 62.099 66.667 0.00 0.00 41.26 4.41
3345 3449 3.375299 AGCATCATAGTTCTTTTCACGCC 59.625 43.478 0.00 0.00 0.00 5.68
3369 3473 9.991906 GGCCATTACTGTCAGTACTAAATATAA 57.008 33.333 12.37 0.00 28.93 0.98
3370 3474 9.375974 AGGCCATTACTGTCAGTACTAAATATA 57.624 33.333 12.37 0.00 28.93 0.86
3371 3475 8.263854 AGGCCATTACTGTCAGTACTAAATAT 57.736 34.615 12.37 0.00 28.93 1.28
3372 3476 7.670605 AGGCCATTACTGTCAGTACTAAATA 57.329 36.000 12.37 0.00 28.93 1.40
3373 3477 6.561519 AGGCCATTACTGTCAGTACTAAAT 57.438 37.500 12.37 2.72 28.93 1.40
3374 3478 6.368779 AAGGCCATTACTGTCAGTACTAAA 57.631 37.500 12.37 0.21 28.93 1.85
3375 3479 6.368779 AAAGGCCATTACTGTCAGTACTAA 57.631 37.500 12.37 0.58 28.93 2.24
3376 3480 6.368779 AAAAGGCCATTACTGTCAGTACTA 57.631 37.500 12.37 0.00 28.93 1.82
3377 3481 4.910458 AAAGGCCATTACTGTCAGTACT 57.090 40.909 12.37 4.61 28.93 2.73
3378 3482 5.472137 TCAAAAAGGCCATTACTGTCAGTAC 59.528 40.000 12.37 1.30 28.93 2.73
3379 3483 5.626142 TCAAAAAGGCCATTACTGTCAGTA 58.374 37.500 8.70 8.70 0.00 2.74
3380 3484 4.469657 TCAAAAAGGCCATTACTGTCAGT 58.530 39.130 10.99 10.99 0.00 3.41
3381 3485 5.393461 GGATCAAAAAGGCCATTACTGTCAG 60.393 44.000 5.01 0.00 0.00 3.51
3382 3486 4.462483 GGATCAAAAAGGCCATTACTGTCA 59.538 41.667 5.01 0.00 0.00 3.58
3383 3487 4.438744 CGGATCAAAAAGGCCATTACTGTC 60.439 45.833 5.01 0.00 0.00 3.51
3384 3488 3.443681 CGGATCAAAAAGGCCATTACTGT 59.556 43.478 5.01 0.00 0.00 3.55
3385 3489 3.734902 GCGGATCAAAAAGGCCATTACTG 60.735 47.826 5.01 0.46 0.00 2.74
3386 3490 2.427095 GCGGATCAAAAAGGCCATTACT 59.573 45.455 5.01 0.00 0.00 2.24
3387 3491 2.165437 TGCGGATCAAAAAGGCCATTAC 59.835 45.455 5.01 0.00 0.00 1.89
3388 3492 2.451490 TGCGGATCAAAAAGGCCATTA 58.549 42.857 5.01 0.00 0.00 1.90
3389 3493 1.265236 TGCGGATCAAAAAGGCCATT 58.735 45.000 5.01 0.00 0.00 3.16
3390 3494 1.137479 CATGCGGATCAAAAAGGCCAT 59.863 47.619 5.01 0.00 0.00 4.40
3391 3495 0.531657 CATGCGGATCAAAAAGGCCA 59.468 50.000 5.01 0.00 0.00 5.36
3392 3496 0.817013 TCATGCGGATCAAAAAGGCC 59.183 50.000 0.00 0.00 0.00 5.19
3393 3497 2.877043 ATCATGCGGATCAAAAAGGC 57.123 45.000 0.00 0.00 0.00 4.35
3394 3498 3.130869 TGGAATCATGCGGATCAAAAAGG 59.869 43.478 0.00 0.00 34.28 3.11
3395 3499 4.374843 TGGAATCATGCGGATCAAAAAG 57.625 40.909 0.00 0.00 34.28 2.27
3396 3500 4.797800 TTGGAATCATGCGGATCAAAAA 57.202 36.364 0.00 0.00 34.28 1.94
3397 3501 4.746729 CTTTGGAATCATGCGGATCAAAA 58.253 39.130 0.00 0.00 32.50 2.44
3398 3502 3.429272 GCTTTGGAATCATGCGGATCAAA 60.429 43.478 0.00 0.00 34.28 2.69
3399 3503 2.099592 GCTTTGGAATCATGCGGATCAA 59.900 45.455 0.00 0.00 34.28 2.57
3400 3504 1.677576 GCTTTGGAATCATGCGGATCA 59.322 47.619 0.00 0.00 34.28 2.92
3401 3505 1.000938 GGCTTTGGAATCATGCGGATC 60.001 52.381 0.00 0.00 34.28 3.36
3402 3506 1.035139 GGCTTTGGAATCATGCGGAT 58.965 50.000 0.00 0.00 38.05 4.18
3403 3507 0.323269 TGGCTTTGGAATCATGCGGA 60.323 50.000 0.00 0.00 0.00 5.54
3426 3530 9.866798 AAATGCCATGTTTTTATTGTTTTGTTT 57.133 22.222 0.00 0.00 0.00 2.83
3441 3545 6.036953 CACGCCATAAAATAAAATGCCATGTT 59.963 34.615 0.00 0.00 0.00 2.71
3442 3546 5.523188 CACGCCATAAAATAAAATGCCATGT 59.477 36.000 0.00 0.00 0.00 3.21
3443 3547 5.523188 ACACGCCATAAAATAAAATGCCATG 59.477 36.000 0.00 0.00 0.00 3.66
3445 3549 5.078411 ACACGCCATAAAATAAAATGCCA 57.922 34.783 0.00 0.00 0.00 4.92
3446 3550 5.105752 TGACACGCCATAAAATAAAATGCC 58.894 37.500 0.00 0.00 0.00 4.40
3447 3551 6.639671 TTGACACGCCATAAAATAAAATGC 57.360 33.333 0.00 0.00 0.00 3.56
3448 3552 8.867935 TGAATTGACACGCCATAAAATAAAATG 58.132 29.630 0.00 0.00 0.00 2.32
3489 3593 4.630069 GCCGTCTGTTACATAGTCATTTGT 59.370 41.667 0.00 0.00 0.00 2.83
3491 3595 3.863424 CGCCGTCTGTTACATAGTCATTT 59.137 43.478 0.00 0.00 0.00 2.32
3492 3596 3.119245 ACGCCGTCTGTTACATAGTCATT 60.119 43.478 0.00 0.00 0.00 2.57
3497 3603 2.347452 CCAAACGCCGTCTGTTACATAG 59.653 50.000 0.00 0.00 0.00 2.23
3505 3611 1.127951 GATACAACCAAACGCCGTCTG 59.872 52.381 0.00 0.00 0.00 3.51
3511 3617 3.585862 TCTCTCTGATACAACCAAACGC 58.414 45.455 0.00 0.00 0.00 4.84
3512 3618 5.060662 TCTCTCTCTGATACAACCAAACG 57.939 43.478 0.00 0.00 0.00 3.60
3522 3628 6.614657 TCTCTCTCTCTCTCTCTCTCTGATA 58.385 44.000 0.00 0.00 0.00 2.15
3525 3631 4.501229 GCTCTCTCTCTCTCTCTCTCTCTG 60.501 54.167 0.00 0.00 0.00 3.35
3526 3632 3.640967 GCTCTCTCTCTCTCTCTCTCTCT 59.359 52.174 0.00 0.00 0.00 3.10
3544 4097 4.827835 GGTCCTTAAAGAAAAACCTGCTCT 59.172 41.667 0.00 0.00 0.00 4.09
3545 4098 4.583073 TGGTCCTTAAAGAAAAACCTGCTC 59.417 41.667 0.00 0.00 0.00 4.26
3546 4099 4.542697 TGGTCCTTAAAGAAAAACCTGCT 58.457 39.130 0.00 0.00 0.00 4.24
3547 4100 4.341235 ACTGGTCCTTAAAGAAAAACCTGC 59.659 41.667 0.00 0.00 30.80 4.85
3548 4101 6.321435 AGAACTGGTCCTTAAAGAAAAACCTG 59.679 38.462 0.00 0.00 32.50 4.00
3549 4102 6.432581 AGAACTGGTCCTTAAAGAAAAACCT 58.567 36.000 0.00 0.00 0.00 3.50
3550 4103 6.710597 AGAACTGGTCCTTAAAGAAAAACC 57.289 37.500 0.00 0.00 0.00 3.27
3551 4104 7.010183 GCAAAGAACTGGTCCTTAAAGAAAAAC 59.990 37.037 0.00 0.00 0.00 2.43
3552 4105 7.039270 GCAAAGAACTGGTCCTTAAAGAAAAA 58.961 34.615 0.00 0.00 0.00 1.94
3553 4106 6.153680 TGCAAAGAACTGGTCCTTAAAGAAAA 59.846 34.615 0.00 0.00 0.00 2.29
3554 4107 5.654650 TGCAAAGAACTGGTCCTTAAAGAAA 59.345 36.000 0.00 0.00 0.00 2.52
3555 4108 5.197451 TGCAAAGAACTGGTCCTTAAAGAA 58.803 37.500 0.00 0.00 0.00 2.52
3556 4109 4.787551 TGCAAAGAACTGGTCCTTAAAGA 58.212 39.130 0.00 0.00 0.00 2.52
3557 4110 5.163561 TGTTGCAAAGAACTGGTCCTTAAAG 60.164 40.000 0.00 0.00 0.00 1.85
3558 4111 4.707448 TGTTGCAAAGAACTGGTCCTTAAA 59.293 37.500 0.00 0.00 0.00 1.52
3559 4112 4.274147 TGTTGCAAAGAACTGGTCCTTAA 58.726 39.130 0.00 0.00 0.00 1.85
3560 4113 3.892284 TGTTGCAAAGAACTGGTCCTTA 58.108 40.909 0.00 0.00 0.00 2.69
3561 4114 2.733956 TGTTGCAAAGAACTGGTCCTT 58.266 42.857 0.00 0.00 0.00 3.36
3562 4115 2.435372 TGTTGCAAAGAACTGGTCCT 57.565 45.000 0.00 0.00 0.00 3.85
3563 4116 3.733443 ATTGTTGCAAAGAACTGGTCC 57.267 42.857 0.00 0.00 29.22 4.46
3564 4117 4.432712 ACAATTGTTGCAAAGAACTGGTC 58.567 39.130 4.92 0.00 29.97 4.02
3565 4118 4.081752 TGACAATTGTTGCAAAGAACTGGT 60.082 37.500 13.36 0.00 29.97 4.00
3566 4119 4.431809 TGACAATTGTTGCAAAGAACTGG 58.568 39.130 13.36 0.00 29.97 4.00
3567 4120 5.108141 CGATGACAATTGTTGCAAAGAACTG 60.108 40.000 13.36 0.00 32.20 3.16
3568 4121 4.977963 CGATGACAATTGTTGCAAAGAACT 59.022 37.500 13.36 0.00 29.22 3.01
3569 4122 4.975502 TCGATGACAATTGTTGCAAAGAAC 59.024 37.500 13.36 0.00 29.22 3.01
3570 4123 5.180367 TCGATGACAATTGTTGCAAAGAA 57.820 34.783 13.36 0.00 31.90 2.52
3571 4124 4.827304 TCGATGACAATTGTTGCAAAGA 57.173 36.364 13.36 7.98 0.00 2.52
3572 4125 6.085573 TGTATCGATGACAATTGTTGCAAAG 58.914 36.000 13.36 5.90 0.00 2.77
3573 4126 6.006759 TGTATCGATGACAATTGTTGCAAA 57.993 33.333 13.36 0.00 0.00 3.68
3574 4127 5.619625 TGTATCGATGACAATTGTTGCAA 57.380 34.783 13.36 0.00 0.00 4.08
3575 4128 5.619625 TTGTATCGATGACAATTGTTGCA 57.380 34.783 13.36 7.50 31.92 4.08
3576 4129 5.512788 CCTTTGTATCGATGACAATTGTTGC 59.487 40.000 13.36 1.09 36.71 4.17
3577 4130 6.611381 ACCTTTGTATCGATGACAATTGTTG 58.389 36.000 13.36 3.81 36.71 3.33
3578 4131 6.817765 ACCTTTGTATCGATGACAATTGTT 57.182 33.333 13.36 0.00 36.71 2.83
3579 4132 7.103641 ACTACCTTTGTATCGATGACAATTGT 58.896 34.615 11.78 11.78 36.71 2.71
3580 4133 7.539712 ACTACCTTTGTATCGATGACAATTG 57.460 36.000 8.54 3.24 36.71 2.32
3581 4134 8.561738 AAACTACCTTTGTATCGATGACAATT 57.438 30.769 8.54 3.04 36.71 2.32
3582 4135 8.561738 AAAACTACCTTTGTATCGATGACAAT 57.438 30.769 8.54 3.55 36.71 2.71
3583 4136 7.118680 GGAAAACTACCTTTGTATCGATGACAA 59.881 37.037 8.54 11.52 35.03 3.18
3584 4137 6.592607 GGAAAACTACCTTTGTATCGATGACA 59.407 38.462 8.54 5.93 0.00 3.58
3585 4138 6.592607 TGGAAAACTACCTTTGTATCGATGAC 59.407 38.462 8.54 3.26 0.00 3.06
3586 4139 6.703319 TGGAAAACTACCTTTGTATCGATGA 58.297 36.000 8.54 0.00 0.00 2.92
3587 4140 6.978343 TGGAAAACTACCTTTGTATCGATG 57.022 37.500 8.54 0.00 0.00 3.84
3588 4141 7.335627 TCATGGAAAACTACCTTTGTATCGAT 58.664 34.615 2.16 2.16 0.00 3.59
3589 4142 6.703319 TCATGGAAAACTACCTTTGTATCGA 58.297 36.000 0.00 0.00 0.00 3.59
3590 4143 6.037172 CCTCATGGAAAACTACCTTTGTATCG 59.963 42.308 0.00 0.00 34.57 2.92
3591 4144 6.884836 ACCTCATGGAAAACTACCTTTGTATC 59.115 38.462 0.00 0.00 37.04 2.24
3592 4145 6.790319 ACCTCATGGAAAACTACCTTTGTAT 58.210 36.000 0.00 0.00 37.04 2.29
3593 4146 6.195600 ACCTCATGGAAAACTACCTTTGTA 57.804 37.500 0.00 0.00 37.04 2.41
3594 4147 5.061721 ACCTCATGGAAAACTACCTTTGT 57.938 39.130 0.00 0.00 37.04 2.83
3595 4148 6.040391 TCAAACCTCATGGAAAACTACCTTTG 59.960 38.462 0.00 0.00 37.04 2.77
3596 4149 6.040504 GTCAAACCTCATGGAAAACTACCTTT 59.959 38.462 0.00 0.00 37.04 3.11
3597 4150 5.535030 GTCAAACCTCATGGAAAACTACCTT 59.465 40.000 0.00 0.00 37.04 3.50
3598 4151 5.070685 GTCAAACCTCATGGAAAACTACCT 58.929 41.667 0.00 0.00 37.04 3.08
3599 4152 5.070685 AGTCAAACCTCATGGAAAACTACC 58.929 41.667 0.00 0.00 37.04 3.18
3600 4153 6.635030 AAGTCAAACCTCATGGAAAACTAC 57.365 37.500 0.00 0.00 37.04 2.73
3601 4154 8.792633 CATTAAGTCAAACCTCATGGAAAACTA 58.207 33.333 0.00 0.00 37.04 2.24
3602 4155 7.505585 TCATTAAGTCAAACCTCATGGAAAACT 59.494 33.333 0.00 0.00 37.04 2.66
3603 4156 7.657336 TCATTAAGTCAAACCTCATGGAAAAC 58.343 34.615 0.00 0.00 37.04 2.43
3695 4248 6.682941 CATCATTTGATTTGTTGCGGAGCTC 61.683 44.000 4.71 4.71 44.18 4.09
3709 4286 7.528996 TTGACTGAAAGGAACATCATTTGAT 57.471 32.000 0.00 0.00 39.30 2.57
3713 4290 8.641498 ACTATTTGACTGAAAGGAACATCATT 57.359 30.769 0.00 0.00 39.30 2.57
3714 4291 8.641498 AACTATTTGACTGAAAGGAACATCAT 57.359 30.769 0.00 0.00 39.30 2.45
3729 4306 7.116805 CCAAATTTCTGCAAGGAACTATTTGAC 59.883 37.037 18.38 0.00 38.49 3.18
3744 4321 2.486918 AGCTTGCAACCAAATTTCTGC 58.513 42.857 0.00 8.74 35.32 4.26
3754 4331 4.202010 TGACAGTTTAGAAAGCTTGCAACC 60.202 41.667 7.33 0.00 0.00 3.77
3772 4349 3.205338 TCTGGTCACACAACAATGACAG 58.795 45.455 6.70 0.00 45.83 3.51
3779 4358 2.049888 TTGCATCTGGTCACACAACA 57.950 45.000 0.00 0.00 0.00 3.33
3816 4395 6.595326 TGGCAACTATGTTAGTCTCAGAAATG 59.405 38.462 0.00 0.00 38.26 2.32
3827 4406 4.333649 CCTGTGTGATGGCAACTATGTTAG 59.666 45.833 0.00 0.00 37.61 2.34
3838 4417 2.472695 TGTCTAACCTGTGTGATGGC 57.527 50.000 0.00 0.00 0.00 4.40
3842 4421 7.276658 TGTATTTCTTTGTCTAACCTGTGTGA 58.723 34.615 0.00 0.00 0.00 3.58
3888 4467 1.156736 CACGTTGGAGTTGCCCTTAG 58.843 55.000 0.00 0.00 34.97 2.18
3892 4471 2.112297 TCCACGTTGGAGTTGCCC 59.888 61.111 3.02 0.00 42.67 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.