Multiple sequence alignment - TraesCS2A01G421000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G421000 chr2A 100.000 4394 0 0 1 4394 676458603 676454210 0.000000e+00 8115.0
1 TraesCS2A01G421000 chr2D 94.929 3865 143 26 502 4340 532158467 532154630 0.000000e+00 6002.0
2 TraesCS2A01G421000 chr2D 91.753 291 19 4 237 525 145773103 145772816 2.460000e-107 399.0
3 TraesCS2A01G421000 chr2D 93.478 184 9 1 59 239 532158648 532158465 2.010000e-68 270.0
4 TraesCS2A01G421000 chr2B 95.302 3427 123 13 502 3901 632025582 632022167 0.000000e+00 5402.0
5 TraesCS2A01G421000 chr2B 84.848 363 24 13 3981 4340 632021909 632021575 1.960000e-88 337.0
6 TraesCS2A01G421000 chr2B 90.947 243 13 4 1 239 632025817 632025580 7.090000e-83 318.0
7 TraesCS2A01G421000 chr5A 94.052 269 16 0 236 504 465260198 465259930 4.090000e-110 409.0
8 TraesCS2A01G421000 chr1B 93.502 277 14 2 232 506 555256556 555256830 4.090000e-110 409.0
9 TraesCS2A01G421000 chr1B 98.148 54 1 0 4341 4394 491436130 491436183 1.300000e-15 95.3
10 TraesCS2A01G421000 chr3D 94.318 264 15 0 239 502 340147633 340147370 5.290000e-109 405.0
11 TraesCS2A01G421000 chr3D 93.633 267 17 0 239 505 303100164 303099898 2.460000e-107 399.0
12 TraesCS2A01G421000 chr5D 93.680 269 17 0 237 505 288716435 288716703 1.900000e-108 403.0
13 TraesCS2A01G421000 chr5B 93.985 266 16 0 239 504 711285254 711285519 1.900000e-108 403.0
14 TraesCS2A01G421000 chr5B 93.657 268 17 0 237 504 94680691 94680424 6.850000e-108 401.0
15 TraesCS2A01G421000 chr5B 98.148 54 1 0 4341 4394 2056741 2056794 1.300000e-15 95.3
16 TraesCS2A01G421000 chr1D 93.455 275 13 2 239 508 281515231 281514957 1.900000e-108 403.0
17 TraesCS2A01G421000 chr7A 100.000 54 0 0 4341 4394 714868036 714867983 2.800000e-17 100.0
18 TraesCS2A01G421000 chr7A 98.113 53 1 0 4342 4394 647291970 647292022 4.680000e-15 93.5
19 TraesCS2A01G421000 chr7B 100.000 53 0 0 4342 4394 467067501 467067449 1.010000e-16 99.0
20 TraesCS2A01G421000 chr3B 100.000 52 0 0 4343 4394 133779087 133779138 3.620000e-16 97.1
21 TraesCS2A01G421000 chr3B 93.333 60 2 2 4335 4394 31064316 31064373 2.180000e-13 87.9
22 TraesCS2A01G421000 chr7D 100.000 51 0 0 4343 4393 457192646 457192696 1.300000e-15 95.3
23 TraesCS2A01G421000 chr6A 98.148 54 1 0 4341 4394 429116455 429116508 1.300000e-15 95.3
24 TraesCS2A01G421000 chr4A 85.246 61 6 3 532 590 497007706 497007765 4.750000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G421000 chr2A 676454210 676458603 4393 True 8115 8115 100.000000 1 4394 1 chr2A.!!$R1 4393
1 TraesCS2A01G421000 chr2D 532154630 532158648 4018 True 3136 6002 94.203500 59 4340 2 chr2D.!!$R2 4281
2 TraesCS2A01G421000 chr2B 632021575 632025817 4242 True 2019 5402 90.365667 1 4340 3 chr2B.!!$R1 4339

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
47 48 0.179032 TGGCTCAAACAAGAAGCGGA 60.179 50.000 0.00 0.0 0.00 5.54 F
1466 1474 0.698238 CTTGGGGGTGGATCTTCACA 59.302 55.000 4.76 0.0 39.27 3.58 F
2394 2402 1.418637 TGGGTAGCTGAAGGTTTCGTT 59.581 47.619 0.00 0.0 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1770 1778 1.208052 GTACCAGCTTGCTCATCAGGA 59.792 52.381 3.44 0.00 0.00 3.86 R
2610 2618 0.037697 ATACACGGCTTGCTTCGTCA 60.038 50.000 0.00 0.00 37.53 4.35 R
3842 3862 0.107897 ATAAATGGTCTGGCGCGTCA 60.108 50.000 14.98 14.98 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 3.551659 CCTCTTTGGCTCAAACAAGAAGC 60.552 47.826 0.00 0.00 0.00 3.86
45 46 2.033299 TCTTTGGCTCAAACAAGAAGCG 59.967 45.455 0.00 0.00 0.00 4.68
46 47 0.667993 TTGGCTCAAACAAGAAGCGG 59.332 50.000 0.00 0.00 0.00 5.52
47 48 0.179032 TGGCTCAAACAAGAAGCGGA 60.179 50.000 0.00 0.00 0.00 5.54
162 163 6.587990 TGAACTCATTTCAAAAGAAAAACGCA 59.412 30.769 0.00 0.00 41.51 5.24
178 179 2.550978 ACGCAGAAATTCTACCATCCG 58.449 47.619 0.00 0.00 0.00 4.18
192 193 1.339631 CCATCCGCTTGGACTGGTTTA 60.340 52.381 0.00 0.00 46.92 2.01
236 240 3.456277 GAGATTGGGACCCTTAGTGACAT 59.544 47.826 13.00 0.00 0.00 3.06
237 241 4.631234 AGATTGGGACCCTTAGTGACATA 58.369 43.478 13.00 0.00 0.00 2.29
238 242 5.036916 AGATTGGGACCCTTAGTGACATAA 58.963 41.667 13.00 0.00 0.00 1.90
239 243 4.837093 TTGGGACCCTTAGTGACATAAG 57.163 45.455 13.00 0.00 33.37 1.73
247 251 5.854010 CCTTAGTGACATAAGGCTAGTCA 57.146 43.478 11.76 11.76 43.97 3.41
248 252 6.412362 CCTTAGTGACATAAGGCTAGTCAT 57.588 41.667 16.85 10.54 43.97 3.06
249 253 7.526142 CCTTAGTGACATAAGGCTAGTCATA 57.474 40.000 16.85 9.84 43.97 2.15
250 254 7.598278 CCTTAGTGACATAAGGCTAGTCATAG 58.402 42.308 16.85 14.17 43.97 2.23
251 255 7.231722 CCTTAGTGACATAAGGCTAGTCATAGT 59.768 40.741 16.85 9.82 43.97 2.12
252 256 6.398234 AGTGACATAAGGCTAGTCATAGTG 57.602 41.667 16.85 0.00 43.35 2.74
253 257 5.303078 AGTGACATAAGGCTAGTCATAGTGG 59.697 44.000 16.85 0.00 43.35 4.00
254 258 4.588951 TGACATAAGGCTAGTCATAGTGGG 59.411 45.833 11.76 0.00 37.36 4.61
255 259 4.816126 ACATAAGGCTAGTCATAGTGGGA 58.184 43.478 0.00 0.00 0.00 4.37
256 260 4.835615 ACATAAGGCTAGTCATAGTGGGAG 59.164 45.833 0.00 0.00 0.00 4.30
257 261 3.406512 AAGGCTAGTCATAGTGGGAGT 57.593 47.619 0.00 0.00 0.00 3.85
258 262 4.537945 AAGGCTAGTCATAGTGGGAGTA 57.462 45.455 0.00 0.00 0.00 2.59
259 263 4.537945 AGGCTAGTCATAGTGGGAGTAA 57.462 45.455 0.00 0.00 0.00 2.24
260 264 4.216708 AGGCTAGTCATAGTGGGAGTAAC 58.783 47.826 0.00 0.00 0.00 2.50
261 265 4.079096 AGGCTAGTCATAGTGGGAGTAACT 60.079 45.833 0.00 0.00 0.00 2.24
262 266 4.650131 GGCTAGTCATAGTGGGAGTAACTT 59.350 45.833 0.00 0.00 0.00 2.66
263 267 5.832060 GGCTAGTCATAGTGGGAGTAACTTA 59.168 44.000 0.00 0.00 0.00 2.24
264 268 6.016108 GGCTAGTCATAGTGGGAGTAACTTAG 60.016 46.154 0.00 0.00 0.00 2.18
265 269 5.855740 AGTCATAGTGGGAGTAACTTAGC 57.144 43.478 0.00 0.00 0.00 3.09
266 270 5.520751 AGTCATAGTGGGAGTAACTTAGCT 58.479 41.667 0.00 0.00 0.00 3.32
267 271 6.670617 AGTCATAGTGGGAGTAACTTAGCTA 58.329 40.000 0.00 0.00 0.00 3.32
268 272 7.124052 AGTCATAGTGGGAGTAACTTAGCTAA 58.876 38.462 5.94 5.94 0.00 3.09
269 273 7.785506 AGTCATAGTGGGAGTAACTTAGCTAAT 59.214 37.037 6.64 0.00 0.00 1.73
270 274 9.075678 GTCATAGTGGGAGTAACTTAGCTAATA 57.924 37.037 6.64 0.00 0.00 0.98
271 275 9.650714 TCATAGTGGGAGTAACTTAGCTAATAA 57.349 33.333 6.64 0.00 0.00 1.40
272 276 9.694137 CATAGTGGGAGTAACTTAGCTAATAAC 57.306 37.037 6.64 5.84 0.00 1.89
273 277 7.729124 AGTGGGAGTAACTTAGCTAATAACA 57.271 36.000 6.64 0.00 0.00 2.41
274 278 8.320338 AGTGGGAGTAACTTAGCTAATAACAT 57.680 34.615 6.64 0.00 0.00 2.71
275 279 9.430399 AGTGGGAGTAACTTAGCTAATAACATA 57.570 33.333 6.64 0.00 0.00 2.29
276 280 9.694137 GTGGGAGTAACTTAGCTAATAACATAG 57.306 37.037 6.64 0.00 0.00 2.23
277 281 8.365647 TGGGAGTAACTTAGCTAATAACATAGC 58.634 37.037 6.64 0.00 46.94 2.97
286 290 5.403897 GCTAATAACATAGCGCACTTCAA 57.596 39.130 11.47 0.00 38.98 2.69
287 291 5.435557 GCTAATAACATAGCGCACTTCAAG 58.564 41.667 11.47 0.00 38.98 3.02
288 292 5.234329 GCTAATAACATAGCGCACTTCAAGA 59.766 40.000 11.47 0.00 38.98 3.02
289 293 6.238103 GCTAATAACATAGCGCACTTCAAGAA 60.238 38.462 11.47 0.00 38.98 2.52
290 294 6.494893 AATAACATAGCGCACTTCAAGAAA 57.505 33.333 11.47 0.00 0.00 2.52
291 295 6.683974 ATAACATAGCGCACTTCAAGAAAT 57.316 33.333 11.47 0.00 0.00 2.17
292 296 5.376854 AACATAGCGCACTTCAAGAAATT 57.623 34.783 11.47 0.00 0.00 1.82
293 297 5.376854 ACATAGCGCACTTCAAGAAATTT 57.623 34.783 11.47 0.00 0.00 1.82
294 298 5.772521 ACATAGCGCACTTCAAGAAATTTT 58.227 33.333 11.47 0.00 0.00 1.82
295 299 6.215845 ACATAGCGCACTTCAAGAAATTTTT 58.784 32.000 11.47 0.00 0.00 1.94
296 300 6.144402 ACATAGCGCACTTCAAGAAATTTTTG 59.856 34.615 11.47 0.00 0.00 2.44
297 301 3.245990 AGCGCACTTCAAGAAATTTTTGC 59.754 39.130 11.47 0.00 0.00 3.68
298 302 3.245990 GCGCACTTCAAGAAATTTTTGCT 59.754 39.130 0.30 0.00 0.00 3.91
299 303 4.260334 GCGCACTTCAAGAAATTTTTGCTT 60.260 37.500 0.30 0.00 0.00 3.91
300 304 5.051106 GCGCACTTCAAGAAATTTTTGCTTA 60.051 36.000 0.30 0.00 0.00 3.09
301 305 6.346838 GCGCACTTCAAGAAATTTTTGCTTAT 60.347 34.615 0.30 0.00 0.00 1.73
302 306 7.005380 CGCACTTCAAGAAATTTTTGCTTATG 58.995 34.615 0.00 0.00 0.00 1.90
303 307 7.306749 CGCACTTCAAGAAATTTTTGCTTATGT 60.307 33.333 0.00 0.00 0.00 2.29
304 308 7.795272 GCACTTCAAGAAATTTTTGCTTATGTG 59.205 33.333 0.00 3.44 0.00 3.21
305 309 8.277713 CACTTCAAGAAATTTTTGCTTATGTGG 58.722 33.333 0.00 0.00 0.00 4.17
306 310 6.783892 TCAAGAAATTTTTGCTTATGTGGC 57.216 33.333 0.00 0.00 0.00 5.01
307 311 6.286758 TCAAGAAATTTTTGCTTATGTGGCA 58.713 32.000 0.00 0.00 37.97 4.92
308 312 6.765036 TCAAGAAATTTTTGCTTATGTGGCAA 59.235 30.769 0.00 0.00 46.12 4.52
319 323 7.637631 TGCTTATGTGGCAAGTATTTAATGA 57.362 32.000 0.00 0.00 36.71 2.57
320 324 7.706159 TGCTTATGTGGCAAGTATTTAATGAG 58.294 34.615 0.00 0.00 36.71 2.90
321 325 7.555914 TGCTTATGTGGCAAGTATTTAATGAGA 59.444 33.333 0.00 0.00 36.71 3.27
322 326 8.072567 GCTTATGTGGCAAGTATTTAATGAGAG 58.927 37.037 0.00 0.00 0.00 3.20
323 327 6.949352 ATGTGGCAAGTATTTAATGAGAGG 57.051 37.500 0.00 0.00 0.00 3.69
324 328 5.815581 TGTGGCAAGTATTTAATGAGAGGT 58.184 37.500 0.00 0.00 0.00 3.85
325 329 5.647658 TGTGGCAAGTATTTAATGAGAGGTG 59.352 40.000 0.00 0.00 0.00 4.00
326 330 5.066505 GTGGCAAGTATTTAATGAGAGGTGG 59.933 44.000 0.00 0.00 0.00 4.61
327 331 5.193679 GGCAAGTATTTAATGAGAGGTGGT 58.806 41.667 0.00 0.00 0.00 4.16
328 332 6.069905 TGGCAAGTATTTAATGAGAGGTGGTA 60.070 38.462 0.00 0.00 0.00 3.25
329 333 6.826741 GGCAAGTATTTAATGAGAGGTGGTAA 59.173 38.462 0.00 0.00 0.00 2.85
330 334 7.201705 GGCAAGTATTTAATGAGAGGTGGTAAC 60.202 40.741 0.00 0.00 0.00 2.50
360 364 5.986004 ATTACTGTAACATAGCGCTTTCC 57.014 39.130 18.68 0.00 0.00 3.13
361 365 3.328382 ACTGTAACATAGCGCTTTCCA 57.672 42.857 18.68 0.00 0.00 3.53
362 366 3.670625 ACTGTAACATAGCGCTTTCCAA 58.329 40.909 18.68 0.00 0.00 3.53
363 367 4.069304 ACTGTAACATAGCGCTTTCCAAA 58.931 39.130 18.68 0.00 0.00 3.28
364 368 4.517453 ACTGTAACATAGCGCTTTCCAAAA 59.483 37.500 18.68 0.00 0.00 2.44
365 369 4.789784 TGTAACATAGCGCTTTCCAAAAC 58.210 39.130 18.68 6.65 0.00 2.43
366 370 4.276183 TGTAACATAGCGCTTTCCAAAACA 59.724 37.500 18.68 9.37 0.00 2.83
367 371 4.314740 AACATAGCGCTTTCCAAAACAA 57.685 36.364 18.68 0.00 0.00 2.83
368 372 4.314740 ACATAGCGCTTTCCAAAACAAA 57.685 36.364 18.68 0.00 0.00 2.83
369 373 4.688021 ACATAGCGCTTTCCAAAACAAAA 58.312 34.783 18.68 0.00 0.00 2.44
370 374 5.296748 ACATAGCGCTTTCCAAAACAAAAT 58.703 33.333 18.68 0.00 0.00 1.82
371 375 5.177327 ACATAGCGCTTTCCAAAACAAAATG 59.823 36.000 18.68 10.96 0.00 2.32
372 376 3.791245 AGCGCTTTCCAAAACAAAATGA 58.209 36.364 2.64 0.00 0.00 2.57
373 377 3.803778 AGCGCTTTCCAAAACAAAATGAG 59.196 39.130 2.64 0.00 0.00 2.90
374 378 3.555547 GCGCTTTCCAAAACAAAATGAGT 59.444 39.130 0.00 0.00 0.00 3.41
375 379 4.318050 GCGCTTTCCAAAACAAAATGAGTC 60.318 41.667 0.00 0.00 0.00 3.36
376 380 5.043248 CGCTTTCCAAAACAAAATGAGTCT 58.957 37.500 0.00 0.00 0.00 3.24
377 381 6.205784 CGCTTTCCAAAACAAAATGAGTCTA 58.794 36.000 0.00 0.00 0.00 2.59
378 382 6.142320 CGCTTTCCAAAACAAAATGAGTCTAC 59.858 38.462 0.00 0.00 0.00 2.59
379 383 6.978080 GCTTTCCAAAACAAAATGAGTCTACA 59.022 34.615 0.00 0.00 0.00 2.74
380 384 7.491048 GCTTTCCAAAACAAAATGAGTCTACAA 59.509 33.333 0.00 0.00 0.00 2.41
381 385 8.925161 TTTCCAAAACAAAATGAGTCTACAAG 57.075 30.769 0.00 0.00 0.00 3.16
382 386 6.503524 TCCAAAACAAAATGAGTCTACAAGC 58.496 36.000 0.00 0.00 0.00 4.01
383 387 6.321181 TCCAAAACAAAATGAGTCTACAAGCT 59.679 34.615 0.00 0.00 0.00 3.74
384 388 7.500892 TCCAAAACAAAATGAGTCTACAAGCTA 59.499 33.333 0.00 0.00 0.00 3.32
385 389 8.134895 CCAAAACAAAATGAGTCTACAAGCTAA 58.865 33.333 0.00 0.00 0.00 3.09
386 390 9.683069 CAAAACAAAATGAGTCTACAAGCTAAT 57.317 29.630 0.00 0.00 0.00 1.73
396 400 9.587772 TGAGTCTACAAGCTAATAAATGAAGTC 57.412 33.333 0.00 0.00 0.00 3.01
397 401 9.587772 GAGTCTACAAGCTAATAAATGAAGTCA 57.412 33.333 0.00 0.00 0.00 3.41
427 431 9.884636 ATGACACTACTATTATGTTACTTTGCA 57.115 29.630 0.00 0.00 0.00 4.08
428 432 9.884636 TGACACTACTATTATGTTACTTTGCAT 57.115 29.630 0.00 0.00 0.00 3.96
450 454 9.982651 TGCATTATGAAGATAGTAACTTAGACC 57.017 33.333 0.00 0.00 0.00 3.85
451 455 9.982651 GCATTATGAAGATAGTAACTTAGACCA 57.017 33.333 0.00 0.00 0.00 4.02
455 459 8.596781 ATGAAGATAGTAACTTAGACCAGTGT 57.403 34.615 0.00 0.00 0.00 3.55
456 460 8.053026 TGAAGATAGTAACTTAGACCAGTGTC 57.947 38.462 0.00 0.00 42.09 3.67
457 461 7.668469 TGAAGATAGTAACTTAGACCAGTGTCA 59.332 37.037 0.00 0.00 44.33 3.58
458 462 8.596781 AAGATAGTAACTTAGACCAGTGTCAT 57.403 34.615 0.00 0.00 44.33 3.06
459 463 9.696572 AAGATAGTAACTTAGACCAGTGTCATA 57.303 33.333 0.00 0.00 44.33 2.15
460 464 9.869667 AGATAGTAACTTAGACCAGTGTCATAT 57.130 33.333 0.00 0.00 44.33 1.78
461 465 9.900710 GATAGTAACTTAGACCAGTGTCATATG 57.099 37.037 0.00 0.00 44.33 1.78
462 466 6.574350 AGTAACTTAGACCAGTGTCATATGC 58.426 40.000 0.00 0.00 44.33 3.14
463 467 5.420725 AACTTAGACCAGTGTCATATGCA 57.579 39.130 0.00 0.00 44.33 3.96
464 468 5.620738 ACTTAGACCAGTGTCATATGCAT 57.379 39.130 3.79 3.79 44.33 3.96
465 469 6.731292 ACTTAGACCAGTGTCATATGCATA 57.269 37.500 9.27 9.27 44.33 3.14
466 470 7.124573 ACTTAGACCAGTGTCATATGCATAA 57.875 36.000 11.13 0.00 44.33 1.90
467 471 6.986817 ACTTAGACCAGTGTCATATGCATAAC 59.013 38.462 11.13 6.04 44.33 1.89
468 472 5.357742 AGACCAGTGTCATATGCATAACA 57.642 39.130 11.13 8.81 44.33 2.41
469 473 5.933617 AGACCAGTGTCATATGCATAACAT 58.066 37.500 11.13 0.00 44.33 2.71
470 474 6.359804 AGACCAGTGTCATATGCATAACATT 58.640 36.000 11.13 5.65 44.33 2.71
471 475 7.508687 AGACCAGTGTCATATGCATAACATTA 58.491 34.615 11.13 0.00 44.33 1.90
472 476 7.658982 AGACCAGTGTCATATGCATAACATTAG 59.341 37.037 11.13 4.46 44.33 1.73
473 477 7.282585 ACCAGTGTCATATGCATAACATTAGT 58.717 34.615 11.13 5.07 40.38 2.24
474 478 7.442364 ACCAGTGTCATATGCATAACATTAGTC 59.558 37.037 11.13 0.00 40.38 2.59
475 479 7.658982 CCAGTGTCATATGCATAACATTAGTCT 59.341 37.037 11.13 2.16 40.38 3.24
476 480 9.696917 CAGTGTCATATGCATAACATTAGTCTA 57.303 33.333 11.13 0.00 40.38 2.59
485 489 9.765795 ATGCATAACATTAGTCTAAGTTACTCC 57.234 33.333 0.00 7.95 34.40 3.85
486 490 8.202137 TGCATAACATTAGTCTAAGTTACTCCC 58.798 37.037 12.76 6.51 30.19 4.30
487 491 7.656542 GCATAACATTAGTCTAAGTTACTCCCC 59.343 40.741 12.76 3.01 30.19 4.81
488 492 8.701895 CATAACATTAGTCTAAGTTACTCCCCA 58.298 37.037 12.76 0.00 30.19 4.96
489 493 6.541934 ACATTAGTCTAAGTTACTCCCCAC 57.458 41.667 0.00 0.00 0.00 4.61
490 494 6.262207 ACATTAGTCTAAGTTACTCCCCACT 58.738 40.000 0.00 0.00 0.00 4.00
491 495 7.416731 ACATTAGTCTAAGTTACTCCCCACTA 58.583 38.462 0.00 0.00 0.00 2.74
492 496 8.066247 ACATTAGTCTAAGTTACTCCCCACTAT 58.934 37.037 0.00 0.00 0.00 2.12
493 497 7.893124 TTAGTCTAAGTTACTCCCCACTATG 57.107 40.000 0.00 0.00 0.00 2.23
494 498 6.088541 AGTCTAAGTTACTCCCCACTATGA 57.911 41.667 0.00 0.00 0.00 2.15
495 499 5.892686 AGTCTAAGTTACTCCCCACTATGAC 59.107 44.000 0.00 0.00 0.00 3.06
496 500 5.068855 GTCTAAGTTACTCCCCACTATGACC 59.931 48.000 0.00 0.00 0.00 4.02
497 501 3.484953 AGTTACTCCCCACTATGACCA 57.515 47.619 0.00 0.00 0.00 4.02
498 502 3.375699 AGTTACTCCCCACTATGACCAG 58.624 50.000 0.00 0.00 0.00 4.00
499 503 1.789523 TACTCCCCACTATGACCAGC 58.210 55.000 0.00 0.00 0.00 4.85
500 504 0.983378 ACTCCCCACTATGACCAGCC 60.983 60.000 0.00 0.00 0.00 4.85
552 556 8.006298 TGTAGTTTGACTTTGATTTGACCATT 57.994 30.769 0.00 0.00 0.00 3.16
599 603 7.939039 TCCTCTATTCTTGTGAATCAAACACTT 59.061 33.333 0.00 0.00 41.55 3.16
641 645 4.092821 TGTTTTCCGATCATCTAGTTTGCG 59.907 41.667 0.00 0.00 0.00 4.85
692 696 6.073167 TGTTTAGAATTATGCGAACCAAACGA 60.073 34.615 0.00 0.00 0.00 3.85
742 746 2.035632 CATGACCTAGGGGACTGAGTC 58.964 57.143 14.81 3.47 43.88 3.36
806 810 6.204688 TGCTTTCCAATAATAGCATTACCTCG 59.795 38.462 0.00 0.00 38.61 4.63
807 811 6.554334 TTTCCAATAATAGCATTACCTCGC 57.446 37.500 0.00 0.00 0.00 5.03
852 856 3.517602 TGATGATGTAAAAGGGACGTCG 58.482 45.455 9.92 0.00 35.90 5.12
866 870 2.161609 GGACGTCGATGGCTTTGAAAAT 59.838 45.455 11.00 0.00 0.00 1.82
948 956 5.705609 TTTTCTCATTTCCTGCCAGTTAC 57.294 39.130 0.00 0.00 0.00 2.50
949 957 2.972625 TCTCATTTCCTGCCAGTTACG 58.027 47.619 0.00 0.00 0.00 3.18
998 1006 3.991121 GCTGAAGTAGTGAAGTCAGGAAC 59.009 47.826 0.00 0.00 38.34 3.62
1014 1022 1.272147 GGAACCATGGCAGAAGGTCTT 60.272 52.381 13.04 0.00 33.74 3.01
1180 1188 3.623510 GCAGGCCTTCATAAGTCAAGTAC 59.376 47.826 0.00 0.00 0.00 2.73
1301 1309 5.147032 TCTCCTTGGAAAAATGGACAATGT 58.853 37.500 0.00 0.00 0.00 2.71
1466 1474 0.698238 CTTGGGGGTGGATCTTCACA 59.302 55.000 4.76 0.00 39.27 3.58
1514 1522 9.522804 GTACATGTCTGATTCTTCCTACTTAAG 57.477 37.037 0.00 0.00 0.00 1.85
1602 1610 3.453424 TGATGATGGTTTGGATCGTACG 58.547 45.455 9.53 9.53 0.00 3.67
1661 1669 3.750130 ACAACTCTTGTAAGCAGCATCTG 59.250 43.478 0.00 0.00 43.27 2.90
1804 1812 2.484264 GCTGGTACAACTGATCCAACAC 59.516 50.000 0.00 0.00 38.70 3.32
1852 1860 3.958798 CCTCGGGAACAAGAGATACCTTA 59.041 47.826 0.00 0.00 36.91 2.69
1953 1961 3.953766 AGTCATCATTACTACTCGCACG 58.046 45.455 0.00 0.00 0.00 5.34
1965 1973 4.389576 CGCACGGAAGCTGTTGCC 62.390 66.667 0.00 0.00 40.80 4.52
2199 2207 3.641434 ATGGAGGAACATGAGTGGAAG 57.359 47.619 0.00 0.00 0.00 3.46
2217 2225 7.398024 AGTGGAAGCTATTCTACAATCAACTT 58.602 34.615 4.91 0.00 46.35 2.66
2220 2228 9.162764 TGGAAGCTATTCTACAATCAACTTAAC 57.837 33.333 0.00 0.00 35.63 2.01
2265 2273 3.769300 AGCTGAACTGGGTTTCAAGTTTT 59.231 39.130 0.00 0.00 35.07 2.43
2345 2353 4.556942 GGTTATTCCCCGAAAATTACCG 57.443 45.455 0.00 0.00 29.26 4.02
2394 2402 1.418637 TGGGTAGCTGAAGGTTTCGTT 59.581 47.619 0.00 0.00 0.00 3.85
2418 2426 2.267681 ATCGCGGAACAGAGACGACC 62.268 60.000 6.13 0.00 35.33 4.79
2487 2495 4.336889 ACTGATTCAAGTGACGGAAAGA 57.663 40.909 0.00 0.00 0.00 2.52
2493 2501 6.262049 TGATTCAAGTGACGGAAAGAAATGAA 59.738 34.615 0.00 0.00 0.00 2.57
2526 2534 4.687483 CCAAAAAGATTTCAGGTGCATGAC 59.313 41.667 0.00 0.00 0.00 3.06
2546 2554 1.734465 CCTTGTGAGAGAAATGACGCC 59.266 52.381 0.00 0.00 0.00 5.68
2638 2646 1.328680 CAAGCCGTGTATCAGTGCATC 59.671 52.381 0.00 0.00 0.00 3.91
2705 2713 3.788694 CGCTCATTTTTGTTGTTCGACAA 59.211 39.130 1.93 1.93 37.73 3.18
2847 2855 4.890158 TCTGCACTACCTTGATTTCTCA 57.110 40.909 0.00 0.00 0.00 3.27
2904 2912 1.141657 AGGCTCAAGAAACTGCAGTCA 59.858 47.619 21.95 0.00 0.00 3.41
3024 3032 1.827344 TCAGTCACTGGTAGCATCTGG 59.173 52.381 4.57 0.00 31.51 3.86
3042 3050 0.240411 GGAAGCTCAAGCACTTGCAG 59.760 55.000 5.49 5.70 45.16 4.41
3051 3059 1.005630 GCACTTGCAGACTCTCCGT 60.006 57.895 0.00 0.00 41.59 4.69
3081 3089 3.454082 AGGCCAACAAAGATTTGGTTCAA 59.546 39.130 5.01 0.00 44.77 2.69
3259 3267 0.110644 GTTCAAGCCGCTCAGAAACG 60.111 55.000 9.15 0.00 0.00 3.60
3345 3353 1.070758 GACAAGCTCAAGGTCCTGACA 59.929 52.381 0.00 0.00 0.00 3.58
3404 3412 2.716424 TCCTTGTCTGAAATGGGGAACT 59.284 45.455 0.32 0.00 0.00 3.01
3442 3450 0.250793 ATTGTGCGTATGACGGGGAA 59.749 50.000 0.70 0.00 42.82 3.97
3496 3504 1.275291 CTCAAGCGGTTGTTCCTAGGA 59.725 52.381 25.18 7.62 34.98 2.94
3718 3726 2.727798 GCATATTGCCAACATCGAATGC 59.272 45.455 0.00 0.00 37.42 3.56
3745 3753 1.325640 CCGACGCACTTTCATCATCTG 59.674 52.381 0.00 0.00 0.00 2.90
3746 3754 1.325640 CGACGCACTTTCATCATCTGG 59.674 52.381 0.00 0.00 0.00 3.86
3747 3755 2.350522 GACGCACTTTCATCATCTGGT 58.649 47.619 0.00 0.00 0.00 4.00
3748 3756 2.744202 GACGCACTTTCATCATCTGGTT 59.256 45.455 0.00 0.00 0.00 3.67
3749 3757 2.744202 ACGCACTTTCATCATCTGGTTC 59.256 45.455 0.00 0.00 0.00 3.62
3750 3758 3.005554 CGCACTTTCATCATCTGGTTCT 58.994 45.455 0.00 0.00 0.00 3.01
3795 3810 5.762711 TGATTCGGACAGAAGAAATGTTTCA 59.237 36.000 8.09 0.00 42.92 2.69
3814 3834 4.521130 TCAGTGCGAACTAGTTTCAGAT 57.479 40.909 10.02 1.00 33.24 2.90
3842 3862 1.059098 TCAGCATGGTGTTGAGAGGT 58.941 50.000 23.35 0.00 32.63 3.85
3845 3865 1.160137 GCATGGTGTTGAGAGGTGAC 58.840 55.000 0.00 0.00 0.00 3.67
3848 3868 2.022129 GGTGTTGAGAGGTGACGCG 61.022 63.158 3.53 3.53 34.13 6.01
3850 3870 3.112709 GTTGAGAGGTGACGCGCC 61.113 66.667 5.73 0.00 34.13 6.53
3883 3923 2.114616 TCCTTTTGTTGTTGGCCATGT 58.885 42.857 6.09 0.00 0.00 3.21
3904 3944 8.105829 CCATGTAATAAGAGGGATTGCTTAGAT 58.894 37.037 0.00 0.00 30.86 1.98
3905 3945 9.512588 CATGTAATAAGAGGGATTGCTTAGATT 57.487 33.333 0.00 0.00 30.86 2.40
3912 3956 4.347607 AGGGATTGCTTAGATTTTGCTGT 58.652 39.130 0.00 0.00 0.00 4.40
3914 3958 3.861689 GGATTGCTTAGATTTTGCTGTGC 59.138 43.478 0.00 0.00 0.00 4.57
3940 3984 4.552184 GCGGTTGTCTTCAGTGTTTCTAAC 60.552 45.833 0.00 0.00 0.00 2.34
3941 3985 4.809426 CGGTTGTCTTCAGTGTTTCTAACT 59.191 41.667 0.00 0.00 0.00 2.24
3942 3986 5.981315 CGGTTGTCTTCAGTGTTTCTAACTA 59.019 40.000 0.00 0.00 0.00 2.24
3943 3987 6.645415 CGGTTGTCTTCAGTGTTTCTAACTAT 59.355 38.462 0.00 0.00 0.00 2.12
3944 3988 7.811236 CGGTTGTCTTCAGTGTTTCTAACTATA 59.189 37.037 0.00 0.00 0.00 1.31
3979 4197 8.525729 AACCCCTCAGATATATTAATTCCAGT 57.474 34.615 0.00 0.00 0.00 4.00
4042 4261 6.769822 CAGAGATTTGCTTATGGATTGTAGGT 59.230 38.462 0.00 0.00 0.00 3.08
4088 4307 3.405831 TCACTCCAGTGCTTTTGATCTG 58.594 45.455 1.49 0.00 45.25 2.90
4098 4317 5.755375 AGTGCTTTTGATCTGTGTATATCCG 59.245 40.000 0.00 0.00 0.00 4.18
4101 4320 5.611374 CTTTTGATCTGTGTATATCCGGGT 58.389 41.667 0.00 0.00 0.00 5.28
4120 4339 1.148273 TTGCTGGTCGGCAAGAAGT 59.852 52.632 12.62 0.00 45.64 3.01
4121 4340 1.165907 TTGCTGGTCGGCAAGAAGTG 61.166 55.000 12.62 0.00 45.64 3.16
4135 4354 5.389935 GGCAAGAAGTGACTCGTTTATTCAG 60.390 44.000 0.00 0.00 29.52 3.02
4140 4359 4.673441 AGTGACTCGTTTATTCAGGATCG 58.327 43.478 0.00 0.00 0.00 3.69
4142 4361 3.181479 TGACTCGTTTATTCAGGATCGGG 60.181 47.826 0.00 0.00 0.00 5.14
4177 4397 1.918262 TGCCATCCATTCAGTCCTCTT 59.082 47.619 0.00 0.00 0.00 2.85
4230 4451 4.488879 CCCTTTCTCTGTAAATGCTTTGC 58.511 43.478 0.00 0.00 0.00 3.68
4249 4470 3.954999 TGCTTTTAACTGTAAACCGCAC 58.045 40.909 0.00 0.00 33.92 5.34
4267 4488 2.439701 CCAGGCCAGGCAGATGTG 60.440 66.667 15.19 1.88 0.00 3.21
4294 4515 4.918037 CAGATTCTGCTTAACTGCCATTC 58.082 43.478 0.00 0.00 0.00 2.67
4295 4516 3.950395 AGATTCTGCTTAACTGCCATTCC 59.050 43.478 0.00 0.00 0.00 3.01
4297 4518 1.277842 TCTGCTTAACTGCCATTCCGA 59.722 47.619 0.00 0.00 0.00 4.55
4298 4519 2.092968 TCTGCTTAACTGCCATTCCGAT 60.093 45.455 0.00 0.00 0.00 4.18
4317 4538 3.066760 CGATAGGCCATATGATACGAGCA 59.933 47.826 5.01 0.00 0.00 4.26
4340 4561 8.755977 AGCAAATGAATCTGGTCATATTTCTTT 58.244 29.630 0.00 0.00 37.25 2.52
4341 4562 8.814235 GCAAATGAATCTGGTCATATTTCTTTG 58.186 33.333 0.00 0.00 37.25 2.77
4342 4563 9.309516 CAAATGAATCTGGTCATATTTCTTTGG 57.690 33.333 0.00 0.00 37.25 3.28
4343 4564 8.827832 AATGAATCTGGTCATATTTCTTTGGA 57.172 30.769 0.00 0.00 37.25 3.53
4344 4565 7.870509 TGAATCTGGTCATATTTCTTTGGAG 57.129 36.000 0.00 0.00 0.00 3.86
4345 4566 7.405292 TGAATCTGGTCATATTTCTTTGGAGT 58.595 34.615 0.00 0.00 0.00 3.85
4346 4567 8.548025 TGAATCTGGTCATATTTCTTTGGAGTA 58.452 33.333 0.00 0.00 0.00 2.59
4347 4568 9.566432 GAATCTGGTCATATTTCTTTGGAGTAT 57.434 33.333 0.00 0.00 0.00 2.12
4348 4569 9.927081 AATCTGGTCATATTTCTTTGGAGTATT 57.073 29.630 0.00 0.00 0.00 1.89
4349 4570 9.927081 ATCTGGTCATATTTCTTTGGAGTATTT 57.073 29.630 0.00 0.00 0.00 1.40
4364 4585 8.763984 TTGGAGTATTTAACCAAAAACTACCA 57.236 30.769 0.00 0.00 40.12 3.25
4365 4586 8.168790 TGGAGTATTTAACCAAAAACTACCAC 57.831 34.615 0.00 0.00 0.00 4.16
4366 4587 7.778853 TGGAGTATTTAACCAAAAACTACCACA 59.221 33.333 0.00 0.00 0.00 4.17
4367 4588 8.799367 GGAGTATTTAACCAAAAACTACCACAT 58.201 33.333 0.00 0.00 0.00 3.21
4373 4594 8.879342 TTAACCAAAAACTACCACATTTCATG 57.121 30.769 0.00 0.00 0.00 3.07
4374 4595 5.852827 ACCAAAAACTACCACATTTCATGG 58.147 37.500 0.00 0.00 43.43 3.66
4375 4596 5.600484 ACCAAAAACTACCACATTTCATGGA 59.400 36.000 0.00 0.00 39.87 3.41
4376 4597 6.098982 ACCAAAAACTACCACATTTCATGGAA 59.901 34.615 0.00 0.00 39.87 3.53
4377 4598 6.989169 CCAAAAACTACCACATTTCATGGAAA 59.011 34.615 0.00 0.00 39.87 3.13
4378 4599 7.042119 CCAAAAACTACCACATTTCATGGAAAC 60.042 37.037 0.00 0.00 39.87 2.78
4379 4600 5.371115 AACTACCACATTTCATGGAAACG 57.629 39.130 0.00 0.00 39.87 3.60
4380 4601 4.394729 ACTACCACATTTCATGGAAACGT 58.605 39.130 0.00 0.00 39.87 3.99
4382 4603 2.955660 ACCACATTTCATGGAAACGTGT 59.044 40.909 14.34 2.96 41.94 4.49
4383 4604 3.004315 ACCACATTTCATGGAAACGTGTC 59.996 43.478 14.34 0.00 41.94 3.67
4384 4605 3.611530 CCACATTTCATGGAAACGTGTCC 60.612 47.826 18.56 18.56 41.94 4.02
4391 4612 2.702592 TGGAAACGTGTCCAGAAACT 57.297 45.000 24.05 0.00 42.97 2.66
4392 4613 3.823281 TGGAAACGTGTCCAGAAACTA 57.177 42.857 24.05 0.00 42.97 2.24
4393 4614 3.460103 TGGAAACGTGTCCAGAAACTAC 58.540 45.455 24.05 0.00 42.97 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 84 5.522460 TGAGCCAAACGTATAAATAGTGCTC 59.478 40.000 0.00 0.00 41.29 4.26
162 163 3.199946 TCCAAGCGGATGGTAGAATTTCT 59.800 43.478 4.03 4.03 41.46 2.52
178 179 7.862873 GCATAGAAAATATAAACCAGTCCAAGC 59.137 37.037 0.00 0.00 0.00 4.01
192 193 6.978659 TCTCGTTCTTCGTGCATAGAAAATAT 59.021 34.615 9.55 0.00 40.80 1.28
236 240 4.537945 ACTCCCACTATGACTAGCCTTA 57.462 45.455 0.00 0.00 0.00 2.69
237 241 3.406512 ACTCCCACTATGACTAGCCTT 57.593 47.619 0.00 0.00 0.00 4.35
238 242 4.079096 AGTTACTCCCACTATGACTAGCCT 60.079 45.833 0.00 0.00 0.00 4.58
239 243 4.216708 AGTTACTCCCACTATGACTAGCC 58.783 47.826 0.00 0.00 0.00 3.93
240 244 5.855740 AAGTTACTCCCACTATGACTAGC 57.144 43.478 0.00 0.00 0.00 3.42
241 245 6.773685 AGCTAAGTTACTCCCACTATGACTAG 59.226 42.308 0.00 0.00 0.00 2.57
242 246 6.670617 AGCTAAGTTACTCCCACTATGACTA 58.329 40.000 0.00 0.00 0.00 2.59
243 247 5.520751 AGCTAAGTTACTCCCACTATGACT 58.479 41.667 0.00 0.00 0.00 3.41
244 248 5.855740 AGCTAAGTTACTCCCACTATGAC 57.144 43.478 0.00 0.00 0.00 3.06
245 249 9.650714 TTATTAGCTAAGTTACTCCCACTATGA 57.349 33.333 12.54 0.00 0.00 2.15
246 250 9.694137 GTTATTAGCTAAGTTACTCCCACTATG 57.306 37.037 12.54 0.00 0.00 2.23
247 251 9.430399 TGTTATTAGCTAAGTTACTCCCACTAT 57.570 33.333 12.54 0.00 0.00 2.12
248 252 8.827832 TGTTATTAGCTAAGTTACTCCCACTA 57.172 34.615 12.54 0.00 0.00 2.74
249 253 7.729124 TGTTATTAGCTAAGTTACTCCCACT 57.271 36.000 12.54 0.00 0.00 4.00
250 254 9.694137 CTATGTTATTAGCTAAGTTACTCCCAC 57.306 37.037 12.54 0.00 0.00 4.61
251 255 8.365647 GCTATGTTATTAGCTAAGTTACTCCCA 58.634 37.037 12.54 0.96 41.15 4.37
252 256 7.541437 CGCTATGTTATTAGCTAAGTTACTCCC 59.459 40.741 12.54 0.00 41.99 4.30
253 257 7.062022 GCGCTATGTTATTAGCTAAGTTACTCC 59.938 40.741 12.54 0.00 41.99 3.85
254 258 7.594015 TGCGCTATGTTATTAGCTAAGTTACTC 59.406 37.037 12.54 0.59 41.99 2.59
255 259 7.381678 GTGCGCTATGTTATTAGCTAAGTTACT 59.618 37.037 12.54 0.00 41.99 2.24
256 260 7.381678 AGTGCGCTATGTTATTAGCTAAGTTAC 59.618 37.037 12.54 9.80 41.99 2.50
257 261 7.431249 AGTGCGCTATGTTATTAGCTAAGTTA 58.569 34.615 12.54 0.00 41.99 2.24
258 262 6.281405 AGTGCGCTATGTTATTAGCTAAGTT 58.719 36.000 12.54 0.00 41.99 2.66
259 263 5.844004 AGTGCGCTATGTTATTAGCTAAGT 58.156 37.500 12.54 3.33 41.99 2.24
260 264 6.420903 TGAAGTGCGCTATGTTATTAGCTAAG 59.579 38.462 12.54 0.00 41.99 2.18
261 265 6.277605 TGAAGTGCGCTATGTTATTAGCTAA 58.722 36.000 8.99 8.99 41.99 3.09
262 266 5.838529 TGAAGTGCGCTATGTTATTAGCTA 58.161 37.500 9.73 0.00 41.99 3.32
263 267 4.693283 TGAAGTGCGCTATGTTATTAGCT 58.307 39.130 9.73 0.00 41.99 3.32
264 268 5.234329 TCTTGAAGTGCGCTATGTTATTAGC 59.766 40.000 9.73 0.00 40.98 3.09
265 269 6.828502 TCTTGAAGTGCGCTATGTTATTAG 57.171 37.500 9.73 0.00 0.00 1.73
266 270 7.603963 TTTCTTGAAGTGCGCTATGTTATTA 57.396 32.000 9.73 0.00 0.00 0.98
267 271 6.494893 TTTCTTGAAGTGCGCTATGTTATT 57.505 33.333 9.73 0.00 0.00 1.40
268 272 6.683974 ATTTCTTGAAGTGCGCTATGTTAT 57.316 33.333 9.73 0.00 0.00 1.89
269 273 6.494893 AATTTCTTGAAGTGCGCTATGTTA 57.505 33.333 9.73 0.00 0.00 2.41
270 274 5.376854 AATTTCTTGAAGTGCGCTATGTT 57.623 34.783 9.73 0.00 0.00 2.71
271 275 5.376854 AAATTTCTTGAAGTGCGCTATGT 57.623 34.783 9.73 0.00 0.00 2.29
272 276 6.519315 CAAAAATTTCTTGAAGTGCGCTATG 58.481 36.000 9.73 0.00 0.00 2.23
273 277 5.119125 GCAAAAATTTCTTGAAGTGCGCTAT 59.881 36.000 9.73 0.00 0.00 2.97
274 278 4.444056 GCAAAAATTTCTTGAAGTGCGCTA 59.556 37.500 9.73 0.00 0.00 4.26
275 279 3.245990 GCAAAAATTTCTTGAAGTGCGCT 59.754 39.130 9.73 0.00 0.00 5.92
276 280 3.245990 AGCAAAAATTTCTTGAAGTGCGC 59.754 39.130 0.00 0.00 35.92 6.09
277 281 5.393902 AAGCAAAAATTTCTTGAAGTGCG 57.606 34.783 13.72 0.00 35.92 5.34
278 282 7.795272 CACATAAGCAAAAATTTCTTGAAGTGC 59.205 33.333 13.72 0.00 0.00 4.40
279 283 8.277713 CCACATAAGCAAAAATTTCTTGAAGTG 58.722 33.333 13.72 11.51 0.00 3.16
280 284 7.041848 GCCACATAAGCAAAAATTTCTTGAAGT 60.042 33.333 13.72 3.33 0.00 3.01
281 285 7.041916 TGCCACATAAGCAAAAATTTCTTGAAG 60.042 33.333 13.72 0.00 37.28 3.02
282 286 6.765036 TGCCACATAAGCAAAAATTTCTTGAA 59.235 30.769 13.72 0.00 37.28 2.69
283 287 6.286758 TGCCACATAAGCAAAAATTTCTTGA 58.713 32.000 13.72 0.00 37.28 3.02
284 288 6.542574 TGCCACATAAGCAAAAATTTCTTG 57.457 33.333 0.00 0.33 37.28 3.02
295 299 7.555914 TCTCATTAAATACTTGCCACATAAGCA 59.444 33.333 0.00 0.00 38.81 3.91
296 300 7.930217 TCTCATTAAATACTTGCCACATAAGC 58.070 34.615 0.00 0.00 0.00 3.09
297 301 8.562892 CCTCTCATTAAATACTTGCCACATAAG 58.437 37.037 0.00 0.00 0.00 1.73
298 302 8.052748 ACCTCTCATTAAATACTTGCCACATAA 58.947 33.333 0.00 0.00 0.00 1.90
299 303 7.498900 CACCTCTCATTAAATACTTGCCACATA 59.501 37.037 0.00 0.00 0.00 2.29
300 304 6.319658 CACCTCTCATTAAATACTTGCCACAT 59.680 38.462 0.00 0.00 0.00 3.21
301 305 5.647658 CACCTCTCATTAAATACTTGCCACA 59.352 40.000 0.00 0.00 0.00 4.17
302 306 5.066505 CCACCTCTCATTAAATACTTGCCAC 59.933 44.000 0.00 0.00 0.00 5.01
303 307 5.192927 CCACCTCTCATTAAATACTTGCCA 58.807 41.667 0.00 0.00 0.00 4.92
304 308 5.193679 ACCACCTCTCATTAAATACTTGCC 58.806 41.667 0.00 0.00 0.00 4.52
305 309 7.335924 TGTTACCACCTCTCATTAAATACTTGC 59.664 37.037 0.00 0.00 0.00 4.01
306 310 8.786826 TGTTACCACCTCTCATTAAATACTTG 57.213 34.615 0.00 0.00 0.00 3.16
334 338 9.367444 GGAAAGCGCTATGTTACAGTAATATAT 57.633 33.333 12.05 2.75 0.00 0.86
335 339 8.361889 TGGAAAGCGCTATGTTACAGTAATATA 58.638 33.333 12.05 8.91 0.00 0.86
336 340 7.214381 TGGAAAGCGCTATGTTACAGTAATAT 58.786 34.615 12.05 7.62 0.00 1.28
337 341 6.575267 TGGAAAGCGCTATGTTACAGTAATA 58.425 36.000 12.05 0.00 0.00 0.98
338 342 5.424757 TGGAAAGCGCTATGTTACAGTAAT 58.575 37.500 12.05 0.00 0.00 1.89
339 343 4.823157 TGGAAAGCGCTATGTTACAGTAA 58.177 39.130 12.05 0.00 0.00 2.24
340 344 4.459390 TGGAAAGCGCTATGTTACAGTA 57.541 40.909 12.05 0.00 0.00 2.74
341 345 3.328382 TGGAAAGCGCTATGTTACAGT 57.672 42.857 12.05 0.00 0.00 3.55
342 346 4.678509 TTTGGAAAGCGCTATGTTACAG 57.321 40.909 12.05 0.00 0.00 2.74
343 347 4.276183 TGTTTTGGAAAGCGCTATGTTACA 59.724 37.500 12.05 5.56 0.00 2.41
344 348 4.789784 TGTTTTGGAAAGCGCTATGTTAC 58.210 39.130 12.05 2.15 0.00 2.50
345 349 5.440234 TTGTTTTGGAAAGCGCTATGTTA 57.560 34.783 12.05 0.00 0.00 2.41
346 350 4.314740 TTGTTTTGGAAAGCGCTATGTT 57.685 36.364 12.05 0.00 0.00 2.71
347 351 4.314740 TTTGTTTTGGAAAGCGCTATGT 57.685 36.364 12.05 0.00 0.00 2.29
348 352 5.404968 TCATTTTGTTTTGGAAAGCGCTATG 59.595 36.000 12.05 5.94 0.00 2.23
349 353 5.537188 TCATTTTGTTTTGGAAAGCGCTAT 58.463 33.333 12.05 0.00 0.00 2.97
350 354 4.938080 TCATTTTGTTTTGGAAAGCGCTA 58.062 34.783 12.05 0.00 0.00 4.26
351 355 3.791245 TCATTTTGTTTTGGAAAGCGCT 58.209 36.364 2.64 2.64 0.00 5.92
352 356 3.555547 ACTCATTTTGTTTTGGAAAGCGC 59.444 39.130 0.00 0.00 0.00 5.92
353 357 5.043248 AGACTCATTTTGTTTTGGAAAGCG 58.957 37.500 0.00 0.00 0.00 4.68
354 358 6.978080 TGTAGACTCATTTTGTTTTGGAAAGC 59.022 34.615 0.00 0.00 0.00 3.51
355 359 8.925161 TTGTAGACTCATTTTGTTTTGGAAAG 57.075 30.769 0.00 0.00 0.00 2.62
356 360 7.491048 GCTTGTAGACTCATTTTGTTTTGGAAA 59.509 33.333 0.00 0.00 0.00 3.13
357 361 6.978080 GCTTGTAGACTCATTTTGTTTTGGAA 59.022 34.615 0.00 0.00 0.00 3.53
358 362 6.321181 AGCTTGTAGACTCATTTTGTTTTGGA 59.679 34.615 0.00 0.00 0.00 3.53
359 363 6.507023 AGCTTGTAGACTCATTTTGTTTTGG 58.493 36.000 0.00 0.00 0.00 3.28
360 364 9.683069 ATTAGCTTGTAGACTCATTTTGTTTTG 57.317 29.630 0.00 0.00 0.00 2.44
370 374 9.587772 GACTTCATTTATTAGCTTGTAGACTCA 57.412 33.333 0.00 0.00 0.00 3.41
371 375 9.587772 TGACTTCATTTATTAGCTTGTAGACTC 57.412 33.333 0.00 0.00 0.00 3.36
401 405 9.884636 TGCAAAGTAACATAATAGTAGTGTCAT 57.115 29.630 0.00 0.00 0.00 3.06
402 406 9.884636 ATGCAAAGTAACATAATAGTAGTGTCA 57.115 29.630 0.00 0.00 0.00 3.58
424 428 9.982651 GGTCTAAGTTACTATCTTCATAATGCA 57.017 33.333 0.00 0.00 0.00 3.96
425 429 9.982651 TGGTCTAAGTTACTATCTTCATAATGC 57.017 33.333 0.00 0.00 0.00 3.56
429 433 9.696572 ACACTGGTCTAAGTTACTATCTTCATA 57.303 33.333 0.00 0.00 0.00 2.15
430 434 8.596781 ACACTGGTCTAAGTTACTATCTTCAT 57.403 34.615 0.00 0.00 0.00 2.57
431 435 7.668469 TGACACTGGTCTAAGTTACTATCTTCA 59.332 37.037 0.00 0.00 44.61 3.02
432 436 8.053026 TGACACTGGTCTAAGTTACTATCTTC 57.947 38.462 0.00 0.00 44.61 2.87
433 437 8.596781 ATGACACTGGTCTAAGTTACTATCTT 57.403 34.615 0.00 0.00 44.61 2.40
434 438 9.869667 ATATGACACTGGTCTAAGTTACTATCT 57.130 33.333 0.00 0.00 44.61 1.98
435 439 9.900710 CATATGACACTGGTCTAAGTTACTATC 57.099 37.037 0.00 0.00 44.61 2.08
436 440 8.361139 GCATATGACACTGGTCTAAGTTACTAT 58.639 37.037 6.97 0.00 44.61 2.12
437 441 7.340999 TGCATATGACACTGGTCTAAGTTACTA 59.659 37.037 6.97 0.00 44.61 1.82
438 442 6.154534 TGCATATGACACTGGTCTAAGTTACT 59.845 38.462 6.97 0.00 44.61 2.24
439 443 6.338146 TGCATATGACACTGGTCTAAGTTAC 58.662 40.000 6.97 0.00 44.61 2.50
440 444 6.538945 TGCATATGACACTGGTCTAAGTTA 57.461 37.500 6.97 0.00 44.61 2.24
441 445 5.420725 TGCATATGACACTGGTCTAAGTT 57.579 39.130 6.97 0.00 44.61 2.66
442 446 5.620738 ATGCATATGACACTGGTCTAAGT 57.379 39.130 6.97 0.00 44.61 2.24
443 447 6.986231 TGTTATGCATATGACACTGGTCTAAG 59.014 38.462 7.36 0.00 44.61 2.18
444 448 6.883744 TGTTATGCATATGACACTGGTCTAA 58.116 36.000 7.36 0.00 44.61 2.10
445 449 6.478512 TGTTATGCATATGACACTGGTCTA 57.521 37.500 7.36 0.00 44.61 2.59
446 450 5.357742 TGTTATGCATATGACACTGGTCT 57.642 39.130 7.36 0.00 44.61 3.85
447 451 6.624352 AATGTTATGCATATGACACTGGTC 57.376 37.500 12.34 0.00 39.65 4.02
448 452 7.282585 ACTAATGTTATGCATATGACACTGGT 58.717 34.615 12.34 7.97 35.88 4.00
449 453 7.658982 AGACTAATGTTATGCATATGACACTGG 59.341 37.037 12.34 7.41 35.88 4.00
450 454 8.599055 AGACTAATGTTATGCATATGACACTG 57.401 34.615 12.34 8.68 35.88 3.66
459 463 9.765795 GGAGTAACTTAGACTAATGTTATGCAT 57.234 33.333 3.79 3.79 40.03 3.96
460 464 8.202137 GGGAGTAACTTAGACTAATGTTATGCA 58.798 37.037 14.73 0.00 0.00 3.96
461 465 7.656542 GGGGAGTAACTTAGACTAATGTTATGC 59.343 40.741 14.73 11.48 0.00 3.14
462 466 8.701895 TGGGGAGTAACTTAGACTAATGTTATG 58.298 37.037 14.73 0.27 0.00 1.90
463 467 8.702819 GTGGGGAGTAACTTAGACTAATGTTAT 58.297 37.037 14.73 8.40 0.00 1.89
464 468 7.897565 AGTGGGGAGTAACTTAGACTAATGTTA 59.102 37.037 10.62 10.62 0.00 2.41
465 469 6.729569 AGTGGGGAGTAACTTAGACTAATGTT 59.270 38.462 11.97 11.97 0.00 2.71
466 470 6.262207 AGTGGGGAGTAACTTAGACTAATGT 58.738 40.000 0.00 0.00 0.00 2.71
467 471 6.793505 AGTGGGGAGTAACTTAGACTAATG 57.206 41.667 0.00 0.00 0.00 1.90
468 472 8.287350 TCATAGTGGGGAGTAACTTAGACTAAT 58.713 37.037 0.00 0.00 0.00 1.73
469 473 7.559170 GTCATAGTGGGGAGTAACTTAGACTAA 59.441 40.741 0.00 0.00 31.58 2.24
470 474 7.059156 GTCATAGTGGGGAGTAACTTAGACTA 58.941 42.308 0.00 0.00 31.58 2.59
471 475 5.892686 GTCATAGTGGGGAGTAACTTAGACT 59.107 44.000 0.00 0.00 31.58 3.24
472 476 5.068855 GGTCATAGTGGGGAGTAACTTAGAC 59.931 48.000 0.00 0.00 32.58 2.59
473 477 5.206587 GGTCATAGTGGGGAGTAACTTAGA 58.793 45.833 0.00 0.00 0.00 2.10
474 478 4.960469 TGGTCATAGTGGGGAGTAACTTAG 59.040 45.833 0.00 0.00 0.00 2.18
475 479 4.950361 TGGTCATAGTGGGGAGTAACTTA 58.050 43.478 0.00 0.00 0.00 2.24
476 480 3.775316 CTGGTCATAGTGGGGAGTAACTT 59.225 47.826 0.00 0.00 0.00 2.66
477 481 3.375699 CTGGTCATAGTGGGGAGTAACT 58.624 50.000 0.00 0.00 0.00 2.24
478 482 2.158943 GCTGGTCATAGTGGGGAGTAAC 60.159 54.545 0.00 0.00 0.00 2.50
479 483 2.116238 GCTGGTCATAGTGGGGAGTAA 58.884 52.381 0.00 0.00 0.00 2.24
480 484 1.691482 GGCTGGTCATAGTGGGGAGTA 60.691 57.143 0.00 0.00 0.00 2.59
481 485 0.983378 GGCTGGTCATAGTGGGGAGT 60.983 60.000 0.00 0.00 0.00 3.85
482 486 0.692419 AGGCTGGTCATAGTGGGGAG 60.692 60.000 0.00 0.00 0.00 4.30
483 487 0.639943 TAGGCTGGTCATAGTGGGGA 59.360 55.000 0.00 0.00 0.00 4.81
484 488 1.507140 TTAGGCTGGTCATAGTGGGG 58.493 55.000 0.00 0.00 0.00 4.96
485 489 3.307059 GCTATTAGGCTGGTCATAGTGGG 60.307 52.174 0.00 0.00 0.00 4.61
486 490 3.324846 TGCTATTAGGCTGGTCATAGTGG 59.675 47.826 0.00 0.00 0.00 4.00
487 491 4.607293 TGCTATTAGGCTGGTCATAGTG 57.393 45.455 0.00 0.00 0.00 2.74
488 492 5.545723 AGAATGCTATTAGGCTGGTCATAGT 59.454 40.000 0.00 0.00 0.00 2.12
489 493 6.047511 AGAATGCTATTAGGCTGGTCATAG 57.952 41.667 0.00 0.00 0.00 2.23
490 494 7.553504 TTAGAATGCTATTAGGCTGGTCATA 57.446 36.000 0.00 0.00 0.00 2.15
491 495 4.989875 AGAATGCTATTAGGCTGGTCAT 57.010 40.909 0.00 0.00 0.00 3.06
492 496 5.887214 TTAGAATGCTATTAGGCTGGTCA 57.113 39.130 0.00 0.00 0.00 4.02
494 498 9.892130 GTATAATTAGAATGCTATTAGGCTGGT 57.108 33.333 0.00 0.00 0.00 4.00
525 529 7.424803 TGGTCAAATCAAAGTCAAACTACATG 58.575 34.615 0.00 0.00 0.00 3.21
527 531 7.581213 ATGGTCAAATCAAAGTCAAACTACA 57.419 32.000 0.00 0.00 0.00 2.74
599 603 9.575783 GGAAAACACATGAACTTTGTAAACTTA 57.424 29.630 0.00 0.00 0.00 2.24
641 645 8.847196 ACATAGGAATATGATATGAATGCATGC 58.153 33.333 11.82 11.82 35.94 4.06
710 714 3.317149 CCTAGGTCATGTGATTGCCAATG 59.683 47.826 0.00 0.00 0.00 2.82
742 746 2.276732 ATTATTGGGAGGCATCACGG 57.723 50.000 0.00 0.00 0.00 4.94
806 810 9.017669 CAGATTATTTTCTTGTTCAATAGCTGC 57.982 33.333 0.00 0.00 0.00 5.25
895 902 4.853924 AAGACACCACAAATTCATCCAC 57.146 40.909 0.00 0.00 0.00 4.02
896 903 5.380900 TGTAAGACACCACAAATTCATCCA 58.619 37.500 0.00 0.00 0.00 3.41
897 904 5.957842 TGTAAGACACCACAAATTCATCC 57.042 39.130 0.00 0.00 0.00 3.51
898 905 7.379529 CACTTTGTAAGACACCACAAATTCATC 59.620 37.037 0.82 0.00 42.15 2.92
948 956 1.518572 CCTCCCGTCGGTGATTTCG 60.519 63.158 11.06 0.00 0.00 3.46
949 957 1.153429 CCCTCCCGTCGGTGATTTC 60.153 63.158 11.06 0.00 0.00 2.17
998 1006 4.696479 AGTATAAGACCTTCTGCCATGG 57.304 45.455 7.63 7.63 0.00 3.66
1014 1022 7.012943 CGATTTTCGAAAGCACAACAAGTATA 58.987 34.615 10.98 0.00 43.74 1.47
1466 1474 5.790593 ACATCTTACGAGTAACATTGTGGT 58.209 37.500 0.00 0.00 0.00 4.16
1564 1572 6.640907 CCATCATCATTTATGCATTGTGTCAG 59.359 38.462 3.54 0.00 35.38 3.51
1579 1587 4.511454 CGTACGATCCAAACCATCATCATT 59.489 41.667 10.44 0.00 0.00 2.57
1758 1766 7.201767 GCTTGCTCATCAGGAATATAAAGTTGT 60.202 37.037 0.00 0.00 28.10 3.32
1766 1774 3.137913 ACCAGCTTGCTCATCAGGAATAT 59.862 43.478 3.44 0.00 28.10 1.28
1770 1778 1.208052 GTACCAGCTTGCTCATCAGGA 59.792 52.381 3.44 0.00 0.00 3.86
1953 1961 1.670967 GCAAATGAGGCAACAGCTTCC 60.671 52.381 0.00 0.00 41.41 3.46
1965 1973 4.574013 GTCTGGTTATCCTCTGCAAATGAG 59.426 45.833 0.00 0.00 34.23 2.90
2115 2123 0.394080 GCAAGCCTTGGCATCTCTCT 60.394 55.000 14.54 0.00 0.00 3.10
2199 2207 7.065803 TGCCAGTTAAGTTGATTGTAGAATAGC 59.934 37.037 0.00 0.00 0.00 2.97
2217 2225 7.885922 TCTGGATTATTTGTTAGTTGCCAGTTA 59.114 33.333 0.00 0.00 40.80 2.24
2220 2228 6.678900 GCTCTGGATTATTTGTTAGTTGCCAG 60.679 42.308 0.00 0.00 41.21 4.85
2265 2273 4.408270 AGATCATCCAAGCTTAGCTTCAGA 59.592 41.667 17.37 16.38 46.77 3.27
2345 2353 6.866770 TCTGATTATCCATTTCCGTCGTATTC 59.133 38.462 0.00 0.00 0.00 1.75
2394 2402 0.679960 TCTCTGTTCCGCGATCCTCA 60.680 55.000 8.23 0.00 0.00 3.86
2418 2426 3.068691 TCGGCGACTTCCTCCAGG 61.069 66.667 4.99 0.00 0.00 4.45
2487 2495 5.245075 TCTTTTTGGCCTTCCGTATTCATTT 59.755 36.000 3.32 0.00 34.14 2.32
2493 2501 4.770010 TGAAATCTTTTTGGCCTTCCGTAT 59.230 37.500 3.32 0.00 34.14 3.06
2526 2534 1.734465 GGCGTCATTTCTCTCACAAGG 59.266 52.381 0.00 0.00 0.00 3.61
2546 2554 5.665459 ACCTCTCTTTTCTTGATATGGTCG 58.335 41.667 0.00 0.00 0.00 4.79
2610 2618 0.037697 ATACACGGCTTGCTTCGTCA 60.038 50.000 0.00 0.00 37.53 4.35
2638 2646 1.376037 GAAAGACCTGGCCTCCACG 60.376 63.158 3.32 0.00 0.00 4.94
2705 2713 2.048023 CATGGAACCGGCACATGCT 61.048 57.895 17.23 0.00 41.70 3.79
2847 2855 3.655276 ATGGTCTTCACTTTCGTACGT 57.345 42.857 16.05 0.00 0.00 3.57
2865 2873 3.681897 GCCTCGCTATTGATCTTGGTATG 59.318 47.826 0.00 0.00 0.00 2.39
2904 2912 1.251251 GAGCAAACCTGAGGTGCAAT 58.749 50.000 15.38 0.00 35.34 3.56
2976 2984 4.333649 CCATACAAATCGTTGCTCACAGAT 59.666 41.667 0.00 0.00 38.39 2.90
3024 3032 1.069364 GTCTGCAAGTGCTTGAGCTTC 60.069 52.381 15.31 0.00 42.93 3.86
3042 3050 0.528470 CCTTCACCTCACGGAGAGTC 59.472 60.000 6.43 0.00 43.12 3.36
3051 3059 1.214175 TCTTTGTTGGCCTTCACCTCA 59.786 47.619 3.32 0.00 0.00 3.86
3081 3089 1.002134 CGTGAGGCACCCCAGATTT 60.002 57.895 0.00 0.00 0.00 2.17
3259 3267 3.064931 CCGTCAGGTAAAACTTCTCCAC 58.935 50.000 0.00 0.00 0.00 4.02
3404 3412 6.877322 GCACAATAGAGGTTGAGGTAAACTAA 59.123 38.462 0.00 0.00 36.14 2.24
3442 3450 1.064166 CCAGAACAGAATGCCAGGGAT 60.064 52.381 0.00 0.00 42.53 3.85
3485 3493 2.708861 TGTCCAGCTTTCCTAGGAACAA 59.291 45.455 24.21 9.71 33.41 2.83
3496 3504 4.070716 CTGAACTCAGATTGTCCAGCTTT 58.929 43.478 0.03 0.00 46.59 3.51
3745 3753 4.374399 TCTGTTACAGAAAACCGAGAACC 58.626 43.478 13.16 0.00 37.57 3.62
3746 3754 4.448060 CCTCTGTTACAGAAAACCGAGAAC 59.552 45.833 16.28 0.00 40.91 3.01
3747 3755 4.342951 TCCTCTGTTACAGAAAACCGAGAA 59.657 41.667 16.28 0.00 40.91 2.87
3748 3756 3.893200 TCCTCTGTTACAGAAAACCGAGA 59.107 43.478 16.28 2.55 40.91 4.04
3749 3757 4.252971 TCCTCTGTTACAGAAAACCGAG 57.747 45.455 16.28 2.81 40.18 4.63
3750 3758 4.282449 TCATCCTCTGTTACAGAAAACCGA 59.718 41.667 16.28 6.76 40.18 4.69
3795 3810 4.381079 GGAGATCTGAAACTAGTTCGCACT 60.381 45.833 8.95 4.49 39.30 4.40
3814 3834 1.421268 ACACCATGCTGAAACTGGAGA 59.579 47.619 0.00 0.00 34.08 3.71
3842 3862 0.107897 ATAAATGGTCTGGCGCGTCA 60.108 50.000 14.98 14.98 0.00 4.35
3845 3865 1.268539 GGAAATAAATGGTCTGGCGCG 60.269 52.381 0.00 0.00 0.00 6.86
3848 3868 5.793817 ACAAAAGGAAATAAATGGTCTGGC 58.206 37.500 0.00 0.00 0.00 4.85
3850 3870 8.550376 CAACAACAAAAGGAAATAAATGGTCTG 58.450 33.333 0.00 0.00 0.00 3.51
3883 3923 8.850156 GCAAAATCTAAGCAATCCCTCTTATTA 58.150 33.333 0.00 0.00 0.00 0.98
3904 3944 2.477176 AACCGCGAGCACAGCAAAA 61.477 52.632 8.23 0.00 34.19 2.44
3905 3945 2.899838 AACCGCGAGCACAGCAAA 60.900 55.556 8.23 0.00 34.19 3.68
3906 3946 3.648982 CAACCGCGAGCACAGCAA 61.649 61.111 8.23 0.00 34.19 3.91
3912 3956 1.664649 CTGAAGACAACCGCGAGCA 60.665 57.895 8.23 0.00 0.00 4.26
3914 3958 0.597637 ACACTGAAGACAACCGCGAG 60.598 55.000 8.23 0.00 0.00 5.03
3953 3997 8.960064 ACTGGAATTAATATATCTGAGGGGTTT 58.040 33.333 0.00 0.00 0.00 3.27
3956 4000 7.922382 ACACTGGAATTAATATATCTGAGGGG 58.078 38.462 0.00 0.00 0.00 4.79
4042 4261 5.495640 TGTTACAGCATCCATATGACACAA 58.504 37.500 3.65 0.00 34.84 3.33
4088 4307 2.218603 CCAGCAAACCCGGATATACAC 58.781 52.381 0.73 0.00 0.00 2.90
4120 4339 3.181479 CCCGATCCTGAATAAACGAGTCA 60.181 47.826 0.00 0.00 0.00 3.41
4121 4340 3.181478 ACCCGATCCTGAATAAACGAGTC 60.181 47.826 0.00 0.00 0.00 3.36
4135 4354 2.124860 CCGAAACCCACCCGATCC 60.125 66.667 0.00 0.00 0.00 3.36
4177 4397 7.812690 TCTGCGAGTAGTAGTATAATGGAAA 57.187 36.000 0.00 0.00 34.00 3.13
4191 4411 3.460857 AGGGCTTAATTCTGCGAGTAG 57.539 47.619 0.00 0.00 0.00 2.57
4230 4451 3.315749 TGGGTGCGGTTTACAGTTAAAAG 59.684 43.478 0.00 0.00 0.00 2.27
4249 4470 3.736224 ACATCTGCCTGGCCTGGG 61.736 66.667 28.23 19.17 0.00 4.45
4284 4505 3.403936 GCCTATCGGAATGGCAGTT 57.596 52.632 16.39 0.00 45.46 3.16
4289 4510 3.912496 TCATATGGCCTATCGGAATGG 57.088 47.619 3.32 0.00 0.00 3.16
4294 4515 3.551046 GCTCGTATCATATGGCCTATCGG 60.551 52.174 3.32 0.00 0.00 4.18
4295 4516 3.066760 TGCTCGTATCATATGGCCTATCG 59.933 47.826 3.32 0.09 0.00 2.92
4297 4518 5.420725 TTTGCTCGTATCATATGGCCTAT 57.579 39.130 3.32 0.00 0.00 2.57
4298 4519 4.882842 TTTGCTCGTATCATATGGCCTA 57.117 40.909 3.32 0.00 0.00 3.93
4317 4538 9.258629 TCCAAAGAAATATGACCAGATTCATTT 57.741 29.630 0.00 0.00 37.42 2.32
4340 4561 7.778853 TGTGGTAGTTTTTGGTTAAATACTCCA 59.221 33.333 0.00 0.00 38.47 3.86
4341 4562 8.168790 TGTGGTAGTTTTTGGTTAAATACTCC 57.831 34.615 0.00 0.00 38.47 3.85
4347 4568 9.319143 CATGAAATGTGGTAGTTTTTGGTTAAA 57.681 29.630 0.00 0.00 40.20 1.52
4348 4569 7.928706 CCATGAAATGTGGTAGTTTTTGGTTAA 59.071 33.333 0.00 0.00 44.81 2.01
4349 4570 7.287927 TCCATGAAATGTGGTAGTTTTTGGTTA 59.712 33.333 0.00 0.00 44.81 2.85
4350 4571 6.098982 TCCATGAAATGTGGTAGTTTTTGGTT 59.901 34.615 0.00 0.00 44.81 3.67
4351 4572 5.600484 TCCATGAAATGTGGTAGTTTTTGGT 59.400 36.000 0.00 0.00 44.81 3.67
4352 4573 6.095432 TCCATGAAATGTGGTAGTTTTTGG 57.905 37.500 0.00 0.00 44.81 3.28
4353 4574 7.306515 CGTTTCCATGAAATGTGGTAGTTTTTG 60.307 37.037 0.00 0.00 44.81 2.44
4354 4575 6.699642 CGTTTCCATGAAATGTGGTAGTTTTT 59.300 34.615 0.00 0.00 44.81 1.94
4355 4576 6.183360 ACGTTTCCATGAAATGTGGTAGTTTT 60.183 34.615 12.30 0.00 46.03 2.43
4356 4577 5.300792 ACGTTTCCATGAAATGTGGTAGTTT 59.699 36.000 12.30 0.00 46.03 2.66
4357 4578 4.825085 ACGTTTCCATGAAATGTGGTAGTT 59.175 37.500 12.30 0.00 46.03 2.24
4358 4579 4.394729 ACGTTTCCATGAAATGTGGTAGT 58.605 39.130 12.30 0.00 46.03 2.73
4365 4586 3.501828 TCTGGACACGTTTCCATGAAATG 59.498 43.478 23.08 10.96 44.97 2.32
4366 4587 3.750371 TCTGGACACGTTTCCATGAAAT 58.250 40.909 23.08 0.00 44.97 2.17
4367 4588 3.201353 TCTGGACACGTTTCCATGAAA 57.799 42.857 23.08 7.41 44.97 2.69
4368 4589 2.920724 TCTGGACACGTTTCCATGAA 57.079 45.000 23.08 9.77 44.97 2.57
4369 4590 2.875933 GTTTCTGGACACGTTTCCATGA 59.124 45.455 23.08 18.25 44.97 3.07
4370 4591 2.878406 AGTTTCTGGACACGTTTCCATG 59.122 45.455 23.08 16.46 44.97 3.66
4371 4592 3.208747 AGTTTCTGGACACGTTTCCAT 57.791 42.857 23.08 5.94 44.97 3.41
4372 4593 2.702592 AGTTTCTGGACACGTTTCCA 57.297 45.000 21.66 21.66 43.83 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.