Multiple sequence alignment - TraesCS2A01G417100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G417100 chr2A 100.000 3335 0 0 1 3335 673197220 673193886 0.000000e+00 6159
1 TraesCS2A01G417100 chr2A 87.893 1049 97 17 1087 2134 673277486 673276467 0.000000e+00 1206
2 TraesCS2A01G417100 chr2D 94.384 2101 83 14 289 2374 528474574 528472494 0.000000e+00 3193
3 TraesCS2A01G417100 chr2D 88.561 1049 90 18 1087 2134 528590054 528589035 0.000000e+00 1245
4 TraesCS2A01G417100 chr2D 91.916 334 10 7 2734 3054 528472132 528471803 5.070000e-123 451
5 TraesCS2A01G417100 chr2D 88.655 238 15 4 39 270 528474892 528474661 2.530000e-71 279
6 TraesCS2A01G417100 chr2D 80.658 243 24 17 504 729 528590706 528590470 2.060000e-37 167
7 TraesCS2A01G417100 chr2B 92.390 1866 100 19 536 2374 626652479 626650629 0.000000e+00 2621
8 TraesCS2A01G417100 chr2B 87.512 1049 98 18 1087 2134 626884289 626883273 0.000000e+00 1181
9 TraesCS2A01G417100 chr2B 91.935 372 18 6 2725 3084 626650289 626649918 8.250000e-141 510
10 TraesCS2A01G417100 chr2B 84.848 231 11 11 286 513 626652800 626652591 9.370000e-51 211
11 TraesCS2A01G417100 chr6A 91.429 210 18 0 1547 1756 454934506 454934715 4.210000e-74 289
12 TraesCS2A01G417100 chr6D 81.233 373 48 17 1398 1756 317414199 317414563 7.040000e-72 281
13 TraesCS2A01G417100 chr6B 90.476 210 20 0 1547 1756 506835964 506835755 9.110000e-71 278
14 TraesCS2A01G417100 chr6B 91.515 165 13 1 3172 3335 674372267 674372103 3.350000e-55 226
15 TraesCS2A01G417100 chr6B 90.964 166 12 1 3173 3335 713882384 713882549 1.560000e-53 220
16 TraesCS2A01G417100 chr6B 86.826 167 17 4 3173 3335 12743040 12742875 7.350000e-42 182
17 TraesCS2A01G417100 chr6B 94.366 71 4 0 3265 3335 720658456 720658526 3.520000e-20 110
18 TraesCS2A01G417100 chr1D 85.990 207 29 0 1543 1749 307420830 307420624 4.330000e-54 222
19 TraesCS2A01G417100 chr1B 87.195 164 17 4 3173 3335 44235338 44235178 2.040000e-42 183
20 TraesCS2A01G417100 chr7A 93.277 119 7 1 3176 3293 257929703 257929821 1.230000e-39 174
21 TraesCS2A01G417100 chr7D 85.207 169 18 6 3174 3335 527199120 527199288 2.060000e-37 167
22 TraesCS2A01G417100 chr7D 84.118 170 20 6 3173 3335 527465931 527466100 1.240000e-34 158
23 TraesCS2A01G417100 chr7D 84.024 169 20 6 3174 3335 526806360 526806528 4.450000e-34 156
24 TraesCS2A01G417100 chr5B 86.755 151 18 2 3174 3323 631804475 631804326 2.060000e-37 167


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G417100 chr2A 673193886 673197220 3334 True 6159.000000 6159 100.000000 1 3335 1 chr2A.!!$R1 3334
1 TraesCS2A01G417100 chr2A 673276467 673277486 1019 True 1206.000000 1206 87.893000 1087 2134 1 chr2A.!!$R2 1047
2 TraesCS2A01G417100 chr2D 528471803 528474892 3089 True 1307.666667 3193 91.651667 39 3054 3 chr2D.!!$R1 3015
3 TraesCS2A01G417100 chr2D 528589035 528590706 1671 True 706.000000 1245 84.609500 504 2134 2 chr2D.!!$R2 1630
4 TraesCS2A01G417100 chr2B 626883273 626884289 1016 True 1181.000000 1181 87.512000 1087 2134 1 chr2B.!!$R1 1047
5 TraesCS2A01G417100 chr2B 626649918 626652800 2882 True 1114.000000 2621 89.724333 286 3084 3 chr2B.!!$R2 2798

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
33 34 0.037697 AATCTGGCTCACACGCGTTA 60.038 50.0 10.22 0.0 0.00 3.18 F
802 1086 0.100861 GCTAGTACTGCCTCACGGTC 59.899 60.0 5.39 0.0 39.22 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1722 2072 0.865769 CGACCTCGTTTGGGAAGTTG 59.134 55.0 0.0 0.0 34.11 3.16 R
2701 3097 0.466543 TATTCGCCGCCCATGTTAGT 59.533 50.0 0.0 0.0 0.00 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.415783 ACGGGCCAAGGTCAAATC 57.584 55.556 4.39 0.00 0.00 2.17
18 19 1.767692 ACGGGCCAAGGTCAAATCT 59.232 52.632 4.39 0.00 0.00 2.40
19 20 0.609131 ACGGGCCAAGGTCAAATCTG 60.609 55.000 4.39 0.00 0.00 2.90
20 21 1.315257 CGGGCCAAGGTCAAATCTGG 61.315 60.000 4.39 0.00 0.00 3.86
21 22 1.607801 GGGCCAAGGTCAAATCTGGC 61.608 60.000 4.39 3.29 41.32 4.85
22 23 0.613012 GGCCAAGGTCAAATCTGGCT 60.613 55.000 11.42 0.00 41.71 4.75
23 24 0.813821 GCCAAGGTCAAATCTGGCTC 59.186 55.000 4.70 0.00 39.18 4.70
24 25 1.887956 GCCAAGGTCAAATCTGGCTCA 60.888 52.381 4.70 0.00 39.18 4.26
25 26 1.815003 CCAAGGTCAAATCTGGCTCAC 59.185 52.381 0.00 0.00 0.00 3.51
26 27 2.507484 CAAGGTCAAATCTGGCTCACA 58.493 47.619 0.00 0.00 0.00 3.58
27 28 2.191128 AGGTCAAATCTGGCTCACAC 57.809 50.000 0.00 0.00 0.00 3.82
28 29 0.798776 GGTCAAATCTGGCTCACACG 59.201 55.000 0.00 0.00 0.00 4.49
29 30 0.166814 GTCAAATCTGGCTCACACGC 59.833 55.000 0.00 0.00 0.00 5.34
30 31 1.133253 CAAATCTGGCTCACACGCG 59.867 57.895 3.53 3.53 0.00 6.01
31 32 1.301716 AAATCTGGCTCACACGCGT 60.302 52.632 5.58 5.58 0.00 6.01
32 33 0.884704 AAATCTGGCTCACACGCGTT 60.885 50.000 10.22 0.00 0.00 4.84
33 34 0.037697 AATCTGGCTCACACGCGTTA 60.038 50.000 10.22 0.00 0.00 3.18
34 35 0.736325 ATCTGGCTCACACGCGTTAC 60.736 55.000 10.22 0.00 0.00 2.50
62 63 5.622460 CGGAATCGGTCTTAGCAGCTTATAT 60.622 44.000 0.00 0.00 0.00 0.86
63 64 6.404403 CGGAATCGGTCTTAGCAGCTTATATA 60.404 42.308 0.00 0.00 0.00 0.86
65 66 5.640189 TCGGTCTTAGCAGCTTATATACC 57.360 43.478 0.00 1.13 0.00 2.73
66 67 5.322754 TCGGTCTTAGCAGCTTATATACCT 58.677 41.667 0.00 0.00 0.00 3.08
68 69 6.944290 TCGGTCTTAGCAGCTTATATACCTAA 59.056 38.462 0.00 0.00 0.00 2.69
69 70 7.449395 TCGGTCTTAGCAGCTTATATACCTAAA 59.551 37.037 0.00 0.00 0.00 1.85
70 71 7.541437 CGGTCTTAGCAGCTTATATACCTAAAC 59.459 40.741 0.00 0.00 0.00 2.01
71 72 8.586744 GGTCTTAGCAGCTTATATACCTAAACT 58.413 37.037 0.00 0.00 0.00 2.66
72 73 9.413048 GTCTTAGCAGCTTATATACCTAAACTG 57.587 37.037 0.00 0.00 31.14 3.16
73 74 9.144298 TCTTAGCAGCTTATATACCTAAACTGT 57.856 33.333 0.00 0.00 30.81 3.55
74 75 9.413048 CTTAGCAGCTTATATACCTAAACTGTC 57.587 37.037 0.00 0.00 30.81 3.51
75 76 6.448006 AGCAGCTTATATACCTAAACTGTCG 58.552 40.000 0.00 0.00 30.81 4.35
76 77 6.264744 AGCAGCTTATATACCTAAACTGTCGA 59.735 38.462 0.00 0.00 30.81 4.20
93 94 1.140052 TCGAGAAGCCAAGGTTCACAA 59.860 47.619 9.01 0.00 41.76 3.33
120 121 5.742453 CACCAGTTGTACACGTATATGTCTC 59.258 44.000 0.00 0.00 33.85 3.36
123 124 6.472486 CCAGTTGTACACGTATATGTCTCTTG 59.528 42.308 0.00 0.00 33.85 3.02
154 155 1.375523 GTCGGCCCGTTCATCAAGT 60.376 57.895 1.63 0.00 0.00 3.16
165 166 5.440685 CCGTTCATCAAGTAACTGTGAAAC 58.559 41.667 0.00 0.00 31.38 2.78
175 176 5.522456 AGTAACTGTGAAACGACGTATCAA 58.478 37.500 0.00 0.00 42.39 2.57
186 187 3.681897 ACGACGTATCAAGTAGAACGAGT 59.318 43.478 0.00 0.00 35.86 4.18
191 192 4.970611 CGTATCAAGTAGAACGAGTCCATG 59.029 45.833 0.00 0.00 34.73 3.66
192 193 5.448768 CGTATCAAGTAGAACGAGTCCATGT 60.449 44.000 0.00 0.00 34.73 3.21
193 194 6.238293 CGTATCAAGTAGAACGAGTCCATGTA 60.238 42.308 0.00 0.00 34.73 2.29
194 195 5.306532 TCAAGTAGAACGAGTCCATGTAC 57.693 43.478 0.00 0.00 0.00 2.90
214 215 8.630037 CATGTACGTATATCCTCTAATGGCATA 58.370 37.037 0.00 0.00 0.00 3.14
249 250 0.947180 TTTAACGCCACAGACGAGCC 60.947 55.000 0.00 0.00 0.00 4.70
250 251 3.620300 TAACGCCACAGACGAGCCG 62.620 63.158 0.00 0.00 0.00 5.52
270 277 2.716217 GGTAGTAGTACTGGACCGTGT 58.284 52.381 13.29 0.00 0.00 4.49
272 279 3.623510 GGTAGTAGTACTGGACCGTGTAC 59.376 52.174 13.29 15.69 39.26 2.90
273 280 7.860461 CGGTAGTAGTACTGGACCGTGTACT 62.860 52.000 26.39 24.25 42.42 2.73
274 281 3.341823 AGTAGTACTGGACCGTGTACTG 58.658 50.000 26.95 3.34 45.89 2.74
275 282 1.542492 AGTACTGGACCGTGTACTGG 58.458 55.000 21.85 3.50 45.05 4.00
276 283 1.202976 AGTACTGGACCGTGTACTGGT 60.203 52.381 21.85 9.72 45.05 4.00
277 284 1.068055 GTACTGGACCGTGTACTGGTG 60.068 57.143 14.04 4.19 40.63 4.17
278 285 0.757935 ACTGGACCGTGTACTGGTGT 60.758 55.000 14.04 4.73 40.63 4.16
279 286 0.319555 CTGGACCGTGTACTGGTGTG 60.320 60.000 14.04 2.29 40.63 3.82
280 287 1.666872 GGACCGTGTACTGGTGTGC 60.667 63.158 14.04 1.81 40.63 4.57
281 288 2.019951 GACCGTGTACTGGTGTGCG 61.020 63.158 14.04 0.00 40.63 5.34
282 289 2.028484 CCGTGTACTGGTGTGCGT 59.972 61.111 0.00 0.00 0.00 5.24
283 290 1.593209 CCGTGTACTGGTGTGCGTT 60.593 57.895 0.00 0.00 0.00 4.84
284 291 1.554042 CCGTGTACTGGTGTGCGTTC 61.554 60.000 0.00 0.00 0.00 3.95
447 522 3.533606 TCCTTGCAATCTCTGAGTAGC 57.466 47.619 0.00 7.97 0.00 3.58
454 529 3.846744 GCAATCTCTGAGTAGCGAGTACG 60.847 52.174 4.32 0.00 42.93 3.67
455 530 2.669300 TCTCTGAGTAGCGAGTACGT 57.331 50.000 4.32 0.00 41.98 3.57
456 531 2.269172 TCTCTGAGTAGCGAGTACGTG 58.731 52.381 4.32 0.00 41.98 4.49
457 532 0.725686 TCTGAGTAGCGAGTACGTGC 59.274 55.000 0.00 0.00 41.98 5.34
458 533 0.446616 CTGAGTAGCGAGTACGTGCA 59.553 55.000 6.38 0.00 41.98 4.57
518 604 8.626526 TGACACTGCGTAGTATAAGAATGATAA 58.373 33.333 5.64 0.00 34.74 1.75
562 736 6.636850 CGGTTTTCTGTGTGAATAAAAAGAGG 59.363 38.462 0.00 0.00 34.24 3.69
680 861 4.371786 GAATGGTCGATGCTCTTGTCATA 58.628 43.478 0.00 0.00 0.00 2.15
687 873 3.969352 CGATGCTCTTGTCATAGACGTAC 59.031 47.826 0.00 0.00 34.95 3.67
802 1086 0.100861 GCTAGTACTGCCTCACGGTC 59.899 60.000 5.39 0.00 39.22 4.79
833 1117 1.019673 CATGAAGGCATTCCACTCCG 58.980 55.000 8.88 0.00 34.28 4.63
854 1138 1.551145 GGAAAGTGACGAGATCGAGC 58.449 55.000 9.58 0.00 43.02 5.03
909 1195 3.427503 GGCGTAATCCTGTTGGTCAAATG 60.428 47.826 0.00 0.00 34.23 2.32
1017 1331 2.724349 GCAGCAGAACTCACAAACAAG 58.276 47.619 0.00 0.00 0.00 3.16
1054 1368 2.100989 ACCACCATCGAGTAGTTCTCC 58.899 52.381 0.00 0.00 39.84 3.71
1221 1571 2.126580 GACGACGTCACCTTCCCG 60.127 66.667 22.66 1.54 32.09 5.14
1258 1608 0.882927 GGCAGAACCACAAGCGTACA 60.883 55.000 0.00 0.00 38.86 2.90
1259 1609 0.234884 GCAGAACCACAAGCGTACAC 59.765 55.000 0.00 0.00 0.00 2.90
1288 1638 2.042831 ATGTTCTTCCCGCAGCAGC 61.043 57.895 0.00 0.00 37.42 5.25
1305 1655 3.128188 CAGCAGCAGCAGCAGGAG 61.128 66.667 12.92 0.00 45.49 3.69
1381 1731 3.062466 CTGCCGACGTCCCTGAGA 61.062 66.667 10.58 0.00 0.00 3.27
1836 2186 1.687494 GCAAGCGATCACACGAGGAC 61.687 60.000 0.00 0.00 35.09 3.85
2133 2483 6.154021 AGCTCACCGTTAGTTAATTAAGAGGA 59.846 38.462 14.91 2.18 0.00 3.71
2134 2484 6.476053 GCTCACCGTTAGTTAATTAAGAGGAG 59.524 42.308 14.91 9.62 0.00 3.69
2135 2485 7.630082 GCTCACCGTTAGTTAATTAAGAGGAGA 60.630 40.741 14.91 12.22 0.00 3.71
2154 2504 6.106673 AGGAGACGGTTATTTACTGTGAATG 58.893 40.000 7.94 0.00 46.41 2.67
2162 2512 3.788227 TTTACTGTGAATGAGCTGGGT 57.212 42.857 0.00 0.00 0.00 4.51
2164 2514 2.191128 ACTGTGAATGAGCTGGGTTC 57.809 50.000 0.00 0.00 0.00 3.62
2184 2534 5.356426 GTTCAACCAATAAACAGGCTTTGT 58.644 37.500 0.00 0.00 43.45 2.83
2209 2559 0.605050 TAGTTGACAGCCGCATGCAA 60.605 50.000 19.57 0.00 44.83 4.08
2245 2595 0.390124 ACGCGTACACTTCTTTGGGA 59.610 50.000 11.67 0.00 0.00 4.37
2285 2635 2.480419 GTGTGCGTTTGCTAAGAGACAT 59.520 45.455 0.00 0.00 43.34 3.06
2297 2647 4.922692 GCTAAGAGACATGAAGATCGGATG 59.077 45.833 0.00 0.00 0.00 3.51
2300 2650 4.158786 AGAGACATGAAGATCGGATGGAT 58.841 43.478 0.00 0.00 38.35 3.41
2443 2793 8.547481 TGTGATACTACAATGATCTTAAGGGA 57.453 34.615 1.85 0.00 0.00 4.20
2446 2796 8.861086 TGATACTACAATGATCTTAAGGGAGAC 58.139 37.037 1.85 0.00 0.00 3.36
2462 2812 4.993905 GGGAGACCGGTCAAATTAATTTG 58.006 43.478 35.00 27.80 44.15 2.32
2463 2813 4.421058 GGAGACCGGTCAAATTAATTTGC 58.579 43.478 35.00 23.24 45.06 3.68
2464 2814 4.082463 GGAGACCGGTCAAATTAATTTGCA 60.082 41.667 35.00 17.90 45.06 4.08
2465 2815 5.059404 AGACCGGTCAAATTAATTTGCAG 57.941 39.130 35.00 22.98 45.06 4.41
2466 2816 4.764823 AGACCGGTCAAATTAATTTGCAGA 59.235 37.500 35.00 14.29 45.06 4.26
2467 2817 5.242838 AGACCGGTCAAATTAATTTGCAGAA 59.757 36.000 35.00 13.98 45.06 3.02
2468 2818 5.848406 ACCGGTCAAATTAATTTGCAGAAA 58.152 33.333 28.54 13.67 45.06 2.52
2469 2819 6.284459 ACCGGTCAAATTAATTTGCAGAAAA 58.716 32.000 28.54 13.06 45.06 2.29
2470 2820 6.934083 ACCGGTCAAATTAATTTGCAGAAAAT 59.066 30.769 28.54 12.61 45.06 1.82
2471 2821 8.091449 ACCGGTCAAATTAATTTGCAGAAAATA 58.909 29.630 28.54 11.84 45.06 1.40
2472 2822 8.379902 CCGGTCAAATTAATTTGCAGAAAATAC 58.620 33.333 28.54 20.14 45.06 1.89
2473 2823 8.101510 CGGTCAAATTAATTTGCAGAAAATACG 58.898 33.333 28.54 18.55 45.06 3.06
2474 2824 8.379902 GGTCAAATTAATTTGCAGAAAATACGG 58.620 33.333 28.54 7.61 45.06 4.02
2475 2825 8.921670 GTCAAATTAATTTGCAGAAAATACGGT 58.078 29.630 28.54 0.00 45.06 4.83
2476 2826 8.920665 TCAAATTAATTTGCAGAAAATACGGTG 58.079 29.630 28.54 7.36 45.06 4.94
2477 2827 8.707839 CAAATTAATTTGCAGAAAATACGGTGT 58.292 29.630 24.00 0.00 40.42 4.16
2478 2828 7.810766 ATTAATTTGCAGAAAATACGGTGTG 57.189 32.000 0.00 0.00 37.51 3.82
2479 2829 5.446143 AATTTGCAGAAAATACGGTGTGA 57.554 34.783 0.00 0.00 37.51 3.58
2480 2830 5.643379 ATTTGCAGAAAATACGGTGTGAT 57.357 34.783 0.00 0.00 36.69 3.06
2481 2831 4.678509 TTGCAGAAAATACGGTGTGATC 57.321 40.909 0.00 0.00 0.00 2.92
2482 2832 3.937814 TGCAGAAAATACGGTGTGATCT 58.062 40.909 0.00 0.00 0.00 2.75
2483 2833 4.323417 TGCAGAAAATACGGTGTGATCTT 58.677 39.130 0.00 0.00 0.00 2.40
2484 2834 5.483811 TGCAGAAAATACGGTGTGATCTTA 58.516 37.500 0.00 0.00 0.00 2.10
2486 2836 7.269316 TGCAGAAAATACGGTGTGATCTTATA 58.731 34.615 0.00 0.00 0.00 0.98
2517 2867 8.753497 TTGTTTGGTGCATATGGTTATATACA 57.247 30.769 4.56 0.00 0.00 2.29
2519 2869 8.845227 TGTTTGGTGCATATGGTTATATACAAG 58.155 33.333 4.56 0.00 27.21 3.16
2520 2870 7.994425 TTGGTGCATATGGTTATATACAAGG 57.006 36.000 4.56 0.00 27.21 3.61
2521 2871 7.323052 TGGTGCATATGGTTATATACAAGGA 57.677 36.000 4.56 0.00 27.21 3.36
2524 2874 9.073475 GGTGCATATGGTTATATACAAGGAAAA 57.927 33.333 4.56 0.00 27.21 2.29
2567 2917 6.926630 AAGTAAAATAGTGGGAAATGGCAA 57.073 33.333 0.00 0.00 0.00 4.52
2570 2920 5.559148 AAAATAGTGGGAAATGGCAAACA 57.441 34.783 0.00 0.00 0.00 2.83
2574 2924 3.242011 AGTGGGAAATGGCAAACAGAAT 58.758 40.909 0.00 0.00 0.00 2.40
2576 2926 4.102996 AGTGGGAAATGGCAAACAGAATTT 59.897 37.500 0.00 0.00 0.00 1.82
2613 2964 5.607119 ATCGGTAATATCGATGCCAAAAC 57.393 39.130 7.72 0.00 44.40 2.43
2625 2976 1.663388 CCAAAACCGCCGCCTTTTC 60.663 57.895 0.00 0.00 0.00 2.29
2627 2978 2.483197 AAAACCGCCGCCTTTTCGT 61.483 52.632 0.00 0.00 0.00 3.85
2674 3034 7.774134 TCCACGTAAATGCTACTATGTTTCTA 58.226 34.615 0.00 0.00 0.00 2.10
2701 3097 8.791327 TCTGATGTTTGCTAATTACTGAATCA 57.209 30.769 0.00 0.00 0.00 2.57
2703 3099 8.565896 TGATGTTTGCTAATTACTGAATCACT 57.434 30.769 0.00 0.00 0.00 3.41
2715 3111 0.663153 GAATCACTAACATGGGCGGC 59.337 55.000 0.00 0.00 0.00 6.53
2716 3112 1.095228 AATCACTAACATGGGCGGCG 61.095 55.000 0.51 0.51 0.00 6.46
2717 3113 1.966901 ATCACTAACATGGGCGGCGA 61.967 55.000 12.98 0.00 0.00 5.54
2719 3115 1.095228 CACTAACATGGGCGGCGAAT 61.095 55.000 12.98 0.00 0.00 3.34
2720 3116 0.466543 ACTAACATGGGCGGCGAATA 59.533 50.000 12.98 0.00 0.00 1.75
2721 3117 0.865769 CTAACATGGGCGGCGAATAC 59.134 55.000 12.98 0.00 0.00 1.89
2722 3118 0.466543 TAACATGGGCGGCGAATACT 59.533 50.000 12.98 0.00 0.00 2.12
2723 3119 1.095228 AACATGGGCGGCGAATACTG 61.095 55.000 12.98 3.02 0.00 2.74
2729 3125 1.529865 GGGCGGCGAATACTGTAATTC 59.470 52.381 12.98 0.00 33.37 2.17
2731 3127 2.806244 GGCGGCGAATACTGTAATTCAT 59.194 45.455 12.98 0.00 35.93 2.57
2746 3142 6.186957 TGTAATTCATAGCAAGGGACACAAT 58.813 36.000 0.00 0.00 0.00 2.71
2749 3145 3.609853 TCATAGCAAGGGACACAATCAC 58.390 45.455 0.00 0.00 0.00 3.06
2786 3182 1.772182 AAGAACACGCAGAGAAGTCG 58.228 50.000 0.00 0.00 0.00 4.18
2854 3250 5.640783 TGTGTGTGATTCTAGATTGCTTGAG 59.359 40.000 0.00 0.00 0.00 3.02
2978 3375 7.761704 CAGCAGTACTATTGTAACTGATTCTGT 59.238 37.037 15.45 0.00 33.62 3.41
3010 3415 3.142838 CCCCTCCCAAGCAATGCG 61.143 66.667 0.00 0.00 0.00 4.73
3011 3416 3.830192 CCCTCCCAAGCAATGCGC 61.830 66.667 0.00 0.00 42.91 6.09
3033 3438 1.001487 TGCATGCAGGAACTTTCAACG 60.001 47.619 18.46 0.00 34.60 4.10
3039 3444 3.998341 TGCAGGAACTTTCAACGGTATAC 59.002 43.478 0.00 0.00 34.60 1.47
3040 3445 3.373130 GCAGGAACTTTCAACGGTATACC 59.627 47.826 12.27 12.27 34.60 2.73
3078 3489 8.938906 CACCCTTTGATTTGATCCTTATTTTTG 58.061 33.333 0.00 0.00 0.00 2.44
3090 3501 9.513906 TGATCCTTATTTTTGTAATCTCACACA 57.486 29.630 0.00 0.00 0.00 3.72
3094 3505 9.702726 CCTTATTTTTGTAATCTCACACATACG 57.297 33.333 0.00 0.00 0.00 3.06
3100 3511 9.647797 TTTTGTAATCTCACACATACGTAATCT 57.352 29.630 0.00 0.00 0.00 2.40
3101 3512 9.647797 TTTGTAATCTCACACATACGTAATCTT 57.352 29.630 0.00 0.00 0.00 2.40
3103 3514 9.946165 TGTAATCTCACACATACGTAATCTTAG 57.054 33.333 0.00 0.00 0.00 2.18
3107 3518 9.900710 ATCTCACACATACGTAATCTTAGATTC 57.099 33.333 11.06 3.02 0.00 2.52
3108 3519 8.068380 TCTCACACATACGTAATCTTAGATTCG 58.932 37.037 11.06 15.53 0.00 3.34
3109 3520 6.635641 TCACACATACGTAATCTTAGATTCGC 59.364 38.462 11.06 5.24 0.00 4.70
3110 3521 6.416750 CACACATACGTAATCTTAGATTCGCA 59.583 38.462 11.06 6.48 0.00 5.10
3111 3522 6.637254 ACACATACGTAATCTTAGATTCGCAG 59.363 38.462 11.06 10.04 0.00 5.18
3112 3523 6.088217 CACATACGTAATCTTAGATTCGCAGG 59.912 42.308 11.06 9.59 0.00 4.85
3113 3524 3.978687 ACGTAATCTTAGATTCGCAGGG 58.021 45.455 11.06 0.00 0.00 4.45
3114 3525 3.383825 ACGTAATCTTAGATTCGCAGGGT 59.616 43.478 11.06 0.00 0.00 4.34
3115 3526 4.581824 ACGTAATCTTAGATTCGCAGGGTA 59.418 41.667 11.06 0.00 0.00 3.69
3116 3527 4.916249 CGTAATCTTAGATTCGCAGGGTAC 59.084 45.833 11.06 0.91 0.00 3.34
3117 3528 5.278364 CGTAATCTTAGATTCGCAGGGTACT 60.278 44.000 11.06 0.00 0.00 2.73
3118 3529 5.615925 AATCTTAGATTCGCAGGGTACTT 57.384 39.130 0.99 0.00 0.00 2.24
3119 3530 6.726490 AATCTTAGATTCGCAGGGTACTTA 57.274 37.500 0.99 0.00 0.00 2.24
3120 3531 5.769484 TCTTAGATTCGCAGGGTACTTAG 57.231 43.478 0.00 0.00 0.00 2.18
3121 3532 2.892784 AGATTCGCAGGGTACTTAGC 57.107 50.000 0.00 0.00 0.00 3.09
3122 3533 2.389715 AGATTCGCAGGGTACTTAGCT 58.610 47.619 0.00 0.00 0.00 3.32
3123 3534 2.362717 AGATTCGCAGGGTACTTAGCTC 59.637 50.000 0.00 0.00 0.00 4.09
3124 3535 0.822164 TTCGCAGGGTACTTAGCTCC 59.178 55.000 0.00 0.00 0.00 4.70
3125 3536 0.323999 TCGCAGGGTACTTAGCTCCA 60.324 55.000 0.00 0.00 0.00 3.86
3126 3537 0.179108 CGCAGGGTACTTAGCTCCAC 60.179 60.000 0.00 0.00 0.00 4.02
3127 3538 0.179108 GCAGGGTACTTAGCTCCACG 60.179 60.000 0.00 0.00 0.00 4.94
3128 3539 1.183549 CAGGGTACTTAGCTCCACGT 58.816 55.000 0.00 0.00 0.00 4.49
3129 3540 2.372264 CAGGGTACTTAGCTCCACGTA 58.628 52.381 0.00 0.00 0.00 3.57
3130 3541 2.098770 CAGGGTACTTAGCTCCACGTAC 59.901 54.545 0.00 0.00 33.32 3.67
3131 3542 1.064654 GGGTACTTAGCTCCACGTACG 59.935 57.143 15.01 15.01 34.54 3.67
3132 3543 1.740025 GGTACTTAGCTCCACGTACGT 59.260 52.381 16.72 16.72 34.54 3.57
3133 3544 2.936498 GGTACTTAGCTCCACGTACGTA 59.064 50.000 22.34 5.54 34.54 3.57
3134 3545 3.242446 GGTACTTAGCTCCACGTACGTAC 60.242 52.174 22.34 15.90 34.54 3.67
3152 3563 5.823609 CGTACGTACGTAATCTCAGTTTC 57.176 43.478 33.95 11.70 44.13 2.78
3153 3564 4.428222 CGTACGTACGTAATCTCAGTTTCG 59.572 45.833 33.95 18.80 44.13 3.46
3154 3565 4.668576 ACGTACGTAATCTCAGTTTCGA 57.331 40.909 21.41 0.00 0.00 3.71
3155 3566 4.645956 ACGTACGTAATCTCAGTTTCGAG 58.354 43.478 21.41 0.00 0.00 4.04
3156 3567 3.477802 CGTACGTAATCTCAGTTTCGAGC 59.522 47.826 7.22 0.00 32.75 5.03
3157 3568 2.516923 ACGTAATCTCAGTTTCGAGCG 58.483 47.619 0.00 0.00 32.75 5.03
3158 3569 2.161012 ACGTAATCTCAGTTTCGAGCGA 59.839 45.455 0.00 0.00 32.75 4.93
3159 3570 3.181499 ACGTAATCTCAGTTTCGAGCGAT 60.181 43.478 0.00 0.00 32.75 4.58
3160 3571 3.178618 CGTAATCTCAGTTTCGAGCGATG 59.821 47.826 0.00 0.00 32.75 3.84
3161 3572 3.510388 AATCTCAGTTTCGAGCGATGA 57.490 42.857 0.00 0.00 32.75 2.92
3162 3573 2.551355 TCTCAGTTTCGAGCGATGAG 57.449 50.000 13.09 13.09 38.97 2.90
3163 3574 2.084546 TCTCAGTTTCGAGCGATGAGA 58.915 47.619 16.33 16.33 42.98 3.27
3164 3575 2.488153 TCTCAGTTTCGAGCGATGAGAA 59.512 45.455 17.40 6.28 42.43 2.87
3165 3576 2.596419 CTCAGTTTCGAGCGATGAGAAC 59.404 50.000 13.75 6.60 39.80 3.01
3166 3577 2.030274 TCAGTTTCGAGCGATGAGAACA 60.030 45.455 7.60 0.00 0.00 3.18
3167 3578 2.731451 CAGTTTCGAGCGATGAGAACAA 59.269 45.455 7.60 0.00 0.00 2.83
3168 3579 3.369147 CAGTTTCGAGCGATGAGAACAAT 59.631 43.478 7.60 0.00 0.00 2.71
3169 3580 3.369147 AGTTTCGAGCGATGAGAACAATG 59.631 43.478 7.60 0.00 0.00 2.82
3170 3581 1.280982 TCGAGCGATGAGAACAATGC 58.719 50.000 0.00 0.00 0.00 3.56
3171 3582 0.043566 CGAGCGATGAGAACAATGCG 60.044 55.000 0.00 0.00 36.05 4.73
3172 3583 0.302890 GAGCGATGAGAACAATGCGG 59.697 55.000 0.00 0.00 36.05 5.69
3173 3584 1.297893 GCGATGAGAACAATGCGGC 60.298 57.895 0.00 0.00 0.00 6.53
3174 3585 1.011904 CGATGAGAACAATGCGGCG 60.012 57.895 0.51 0.51 0.00 6.46
3175 3586 1.420641 CGATGAGAACAATGCGGCGA 61.421 55.000 12.98 0.00 0.00 5.54
3176 3587 0.726827 GATGAGAACAATGCGGCGAA 59.273 50.000 12.98 0.00 0.00 4.70
3177 3588 0.447801 ATGAGAACAATGCGGCGAAC 59.552 50.000 12.98 0.00 0.00 3.95
3178 3589 1.134694 GAGAACAATGCGGCGAACC 59.865 57.895 12.98 0.00 0.00 3.62
3179 3590 1.573829 GAGAACAATGCGGCGAACCA 61.574 55.000 12.98 0.00 34.57 3.67
3180 3591 1.169661 AGAACAATGCGGCGAACCAA 61.170 50.000 12.98 0.00 34.57 3.67
3181 3592 1.001745 GAACAATGCGGCGAACCAAC 61.002 55.000 12.98 0.00 34.57 3.77
3182 3593 2.126502 CAATGCGGCGAACCAACC 60.127 61.111 12.98 0.00 34.57 3.77
3183 3594 2.282180 AATGCGGCGAACCAACCT 60.282 55.556 12.98 0.00 34.57 3.50
3184 3595 2.625823 AATGCGGCGAACCAACCTG 61.626 57.895 12.98 0.00 34.57 4.00
3185 3596 3.842925 ATGCGGCGAACCAACCTGT 62.843 57.895 12.98 0.00 34.57 4.00
3186 3597 4.025401 GCGGCGAACCAACCTGTG 62.025 66.667 12.98 0.00 34.57 3.66
3199 3610 2.879103 ACCTGTGGTTGGATGGTTAG 57.121 50.000 0.00 0.00 27.29 2.34
3200 3611 2.344592 ACCTGTGGTTGGATGGTTAGA 58.655 47.619 0.00 0.00 27.29 2.10
3201 3612 2.919602 ACCTGTGGTTGGATGGTTAGAT 59.080 45.455 0.00 0.00 27.29 1.98
3202 3613 3.282021 CCTGTGGTTGGATGGTTAGATG 58.718 50.000 0.00 0.00 0.00 2.90
3203 3614 3.282021 CTGTGGTTGGATGGTTAGATGG 58.718 50.000 0.00 0.00 0.00 3.51
3204 3615 2.916269 TGTGGTTGGATGGTTAGATGGA 59.084 45.455 0.00 0.00 0.00 3.41
3205 3616 3.279434 GTGGTTGGATGGTTAGATGGAC 58.721 50.000 0.00 0.00 0.00 4.02
3206 3617 3.054361 GTGGTTGGATGGTTAGATGGACT 60.054 47.826 0.00 0.00 0.00 3.85
3207 3618 3.054434 TGGTTGGATGGTTAGATGGACTG 60.054 47.826 0.00 0.00 0.00 3.51
3208 3619 3.054361 GGTTGGATGGTTAGATGGACTGT 60.054 47.826 0.00 0.00 0.00 3.55
3209 3620 3.912496 TGGATGGTTAGATGGACTGTG 57.088 47.619 0.00 0.00 0.00 3.66
3210 3621 2.505407 TGGATGGTTAGATGGACTGTGG 59.495 50.000 0.00 0.00 0.00 4.17
3211 3622 2.505819 GGATGGTTAGATGGACTGTGGT 59.494 50.000 0.00 0.00 0.00 4.16
3212 3623 3.709653 GGATGGTTAGATGGACTGTGGTA 59.290 47.826 0.00 0.00 0.00 3.25
3213 3624 4.348168 GGATGGTTAGATGGACTGTGGTAT 59.652 45.833 0.00 0.00 0.00 2.73
3214 3625 5.511545 GGATGGTTAGATGGACTGTGGTATC 60.512 48.000 0.00 0.00 0.00 2.24
3215 3626 3.709653 TGGTTAGATGGACTGTGGTATCC 59.290 47.826 0.00 0.00 35.37 2.59
3216 3627 3.071167 GGTTAGATGGACTGTGGTATCCC 59.929 52.174 0.00 0.00 33.69 3.85
3217 3628 1.807814 AGATGGACTGTGGTATCCCC 58.192 55.000 0.00 0.00 33.69 4.81
3218 3629 1.009552 AGATGGACTGTGGTATCCCCA 59.990 52.381 0.00 0.00 42.51 4.96
3219 3630 1.417890 GATGGACTGTGGTATCCCCAG 59.582 57.143 0.00 0.00 46.45 4.45
3220 3631 1.271840 TGGACTGTGGTATCCCCAGC 61.272 60.000 0.00 0.00 46.45 4.85
3221 3632 1.527370 GACTGTGGTATCCCCAGCC 59.473 63.158 0.00 0.00 46.45 4.85
3222 3633 1.984288 GACTGTGGTATCCCCAGCCC 61.984 65.000 0.00 0.00 46.45 5.19
3223 3634 2.000701 CTGTGGTATCCCCAGCCCA 61.001 63.158 0.00 0.00 46.45 5.36
3224 3635 2.270874 CTGTGGTATCCCCAGCCCAC 62.271 65.000 0.00 0.00 46.45 4.61
3225 3636 2.694616 TGGTATCCCCAGCCCACC 60.695 66.667 0.00 0.00 38.72 4.61
3226 3637 2.694616 GGTATCCCCAGCCCACCA 60.695 66.667 0.00 0.00 0.00 4.17
3227 3638 2.757124 GGTATCCCCAGCCCACCAG 61.757 68.421 0.00 0.00 0.00 4.00
3228 3639 2.368192 TATCCCCAGCCCACCAGG 60.368 66.667 0.00 0.00 39.47 4.45
3238 3649 4.821935 CCACCAGGGTTCAAGTCC 57.178 61.111 0.00 0.00 0.00 3.85
3239 3650 2.155065 CCACCAGGGTTCAAGTCCT 58.845 57.895 0.00 0.00 0.00 3.85
3243 3654 3.329300 CAGGGTTCAAGTCCTGGTG 57.671 57.895 0.00 0.00 44.99 4.17
3244 3655 0.890996 CAGGGTTCAAGTCCTGGTGC 60.891 60.000 0.00 0.00 44.99 5.01
3245 3656 1.062488 AGGGTTCAAGTCCTGGTGCT 61.062 55.000 0.00 0.00 31.11 4.40
3246 3657 0.606673 GGGTTCAAGTCCTGGTGCTC 60.607 60.000 0.00 0.00 0.00 4.26
3247 3658 0.951040 GGTTCAAGTCCTGGTGCTCG 60.951 60.000 0.00 0.00 0.00 5.03
3248 3659 0.951040 GTTCAAGTCCTGGTGCTCGG 60.951 60.000 0.00 0.00 0.00 4.63
3249 3660 1.118965 TTCAAGTCCTGGTGCTCGGA 61.119 55.000 0.00 0.00 0.00 4.55
3250 3661 0.904865 TCAAGTCCTGGTGCTCGGAT 60.905 55.000 0.00 0.00 0.00 4.18
3251 3662 0.036010 CAAGTCCTGGTGCTCGGATT 60.036 55.000 0.00 0.00 0.00 3.01
3252 3663 0.693049 AAGTCCTGGTGCTCGGATTT 59.307 50.000 0.00 0.00 0.00 2.17
3253 3664 0.250513 AGTCCTGGTGCTCGGATTTC 59.749 55.000 0.00 0.00 0.00 2.17
3254 3665 0.744771 GTCCTGGTGCTCGGATTTCC 60.745 60.000 0.00 0.00 0.00 3.13
3275 3686 2.689083 CGATGCGCATTTAGTGGGA 58.311 52.632 26.12 0.00 43.02 4.37
3276 3687 0.583438 CGATGCGCATTTAGTGGGAG 59.417 55.000 26.12 4.12 43.02 4.30
3277 3688 0.947244 GATGCGCATTTAGTGGGAGG 59.053 55.000 26.12 0.00 43.02 4.30
3278 3689 0.546122 ATGCGCATTTAGTGGGAGGA 59.454 50.000 19.28 0.00 43.02 3.71
3279 3690 0.107703 TGCGCATTTAGTGGGAGGAG 60.108 55.000 5.66 0.00 43.02 3.69
3280 3691 0.178068 GCGCATTTAGTGGGAGGAGA 59.822 55.000 0.30 0.00 43.02 3.71
3281 3692 1.941325 CGCATTTAGTGGGAGGAGAC 58.059 55.000 0.00 0.00 43.02 3.36
3282 3693 1.802880 CGCATTTAGTGGGAGGAGACG 60.803 57.143 0.00 0.00 43.02 4.18
3283 3694 1.207329 GCATTTAGTGGGAGGAGACGT 59.793 52.381 0.00 0.00 0.00 4.34
3284 3695 2.354805 GCATTTAGTGGGAGGAGACGTT 60.355 50.000 0.00 0.00 0.00 3.99
3285 3696 3.522553 CATTTAGTGGGAGGAGACGTTC 58.477 50.000 0.00 0.00 0.00 3.95
3306 3717 3.860717 TCGACGACGAGACGCTTA 58.139 55.556 5.75 0.00 43.81 3.09
3307 3718 1.417592 TCGACGACGAGACGCTTAC 59.582 57.895 5.75 0.00 43.81 2.34
3308 3719 1.922220 CGACGACGAGACGCTTACG 60.922 63.158 0.00 0.00 43.40 3.18
3309 3720 1.579626 GACGACGAGACGCTTACGG 60.580 63.158 0.00 0.00 46.04 4.02
3310 3721 2.233007 GACGACGAGACGCTTACGGT 62.233 60.000 0.00 0.00 46.04 4.83
3311 3722 1.862147 CGACGAGACGCTTACGGTG 60.862 63.158 0.00 0.00 46.04 4.94
3312 3723 1.499056 GACGAGACGCTTACGGTGA 59.501 57.895 0.00 0.00 46.04 4.02
3313 3724 0.792356 GACGAGACGCTTACGGTGAC 60.792 60.000 0.00 0.00 46.04 3.67
3314 3725 1.233285 ACGAGACGCTTACGGTGACT 61.233 55.000 0.00 0.00 46.04 3.41
3315 3726 0.109873 CGAGACGCTTACGGTGACTT 60.110 55.000 0.00 0.00 46.04 3.01
3316 3727 1.615502 GAGACGCTTACGGTGACTTC 58.384 55.000 0.00 0.00 46.04 3.01
3317 3728 0.109873 AGACGCTTACGGTGACTTCG 60.110 55.000 0.00 0.00 46.04 3.79
3318 3729 0.386478 GACGCTTACGGTGACTTCGT 60.386 55.000 0.00 0.00 46.04 3.85
3319 3730 0.874390 ACGCTTACGGTGACTTCGTA 59.126 50.000 0.00 0.00 46.04 3.43
3320 3731 1.266718 ACGCTTACGGTGACTTCGTAA 59.733 47.619 6.65 6.65 46.48 3.18
3327 3738 6.841443 TTACGGTGACTTCGTAAATTTCAA 57.159 33.333 4.73 0.00 45.94 2.69
3328 3739 5.338614 ACGGTGACTTCGTAAATTTCAAG 57.661 39.130 0.00 0.00 39.22 3.02
3329 3740 5.051816 ACGGTGACTTCGTAAATTTCAAGA 58.948 37.500 0.00 0.00 39.22 3.02
3330 3741 5.699458 ACGGTGACTTCGTAAATTTCAAGAT 59.301 36.000 0.00 0.00 39.22 2.40
3331 3742 6.015504 CGGTGACTTCGTAAATTTCAAGATG 58.984 40.000 0.00 0.00 0.00 2.90
3332 3743 6.128661 CGGTGACTTCGTAAATTTCAAGATGA 60.129 38.462 0.00 0.00 0.00 2.92
3333 3744 7.413000 CGGTGACTTCGTAAATTTCAAGATGAT 60.413 37.037 0.00 0.00 0.00 2.45
3334 3745 8.879759 GGTGACTTCGTAAATTTCAAGATGATA 58.120 33.333 0.00 0.00 0.00 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.609131 CAGATTTGACCTTGGCCCGT 60.609 55.000 0.00 0.00 0.00 5.28
1 2 1.315257 CCAGATTTGACCTTGGCCCG 61.315 60.000 0.00 0.00 0.00 6.13
2 3 1.607801 GCCAGATTTGACCTTGGCCC 61.608 60.000 0.00 0.00 36.52 5.80
3 4 0.613012 AGCCAGATTTGACCTTGGCC 60.613 55.000 10.47 0.00 42.89 5.36
4 5 0.813821 GAGCCAGATTTGACCTTGGC 59.186 55.000 6.24 6.24 42.27 4.52
5 6 1.815003 GTGAGCCAGATTTGACCTTGG 59.185 52.381 0.00 0.00 0.00 3.61
6 7 2.227388 GTGTGAGCCAGATTTGACCTTG 59.773 50.000 0.00 0.00 0.00 3.61
7 8 2.508526 GTGTGAGCCAGATTTGACCTT 58.491 47.619 0.00 0.00 0.00 3.50
8 9 1.609061 CGTGTGAGCCAGATTTGACCT 60.609 52.381 0.00 0.00 0.00 3.85
9 10 0.798776 CGTGTGAGCCAGATTTGACC 59.201 55.000 0.00 0.00 0.00 4.02
10 11 0.166814 GCGTGTGAGCCAGATTTGAC 59.833 55.000 0.00 0.00 0.00 3.18
11 12 1.291184 CGCGTGTGAGCCAGATTTGA 61.291 55.000 0.00 0.00 0.00 2.69
12 13 1.133253 CGCGTGTGAGCCAGATTTG 59.867 57.895 0.00 0.00 0.00 2.32
13 14 0.884704 AACGCGTGTGAGCCAGATTT 60.885 50.000 14.98 0.00 0.00 2.17
14 15 0.037697 TAACGCGTGTGAGCCAGATT 60.038 50.000 14.98 0.00 0.00 2.40
15 16 0.736325 GTAACGCGTGTGAGCCAGAT 60.736 55.000 14.98 0.00 0.00 2.90
16 17 1.372499 GTAACGCGTGTGAGCCAGA 60.372 57.895 14.98 0.00 0.00 3.86
17 18 2.716828 CGTAACGCGTGTGAGCCAG 61.717 63.158 14.98 0.00 35.54 4.85
18 19 2.731721 CGTAACGCGTGTGAGCCA 60.732 61.111 14.98 0.00 35.54 4.75
27 28 1.264957 CGATTCCGAACGTAACGCG 59.735 57.895 3.53 3.53 41.90 6.01
28 29 1.072666 ACCGATTCCGAACGTAACGC 61.073 55.000 9.10 0.00 38.22 4.84
29 30 0.909843 GACCGATTCCGAACGTAACG 59.090 55.000 7.87 7.87 38.22 3.18
30 31 2.268730 AGACCGATTCCGAACGTAAC 57.731 50.000 0.00 0.00 38.22 2.50
31 32 3.731867 GCTAAGACCGATTCCGAACGTAA 60.732 47.826 0.00 0.00 38.22 3.18
32 33 2.223340 GCTAAGACCGATTCCGAACGTA 60.223 50.000 0.00 0.00 38.22 3.57
33 34 1.468736 GCTAAGACCGATTCCGAACGT 60.469 52.381 0.00 0.00 38.22 3.99
34 35 1.197910 GCTAAGACCGATTCCGAACG 58.802 55.000 0.00 0.00 38.22 3.95
35 36 2.194271 CTGCTAAGACCGATTCCGAAC 58.806 52.381 0.00 0.00 38.22 3.95
36 37 1.470979 GCTGCTAAGACCGATTCCGAA 60.471 52.381 0.00 0.00 38.22 4.30
37 38 0.102481 GCTGCTAAGACCGATTCCGA 59.898 55.000 0.00 0.00 38.22 4.55
62 63 3.159472 TGGCTTCTCGACAGTTTAGGTA 58.841 45.455 0.00 0.00 0.00 3.08
63 64 1.968493 TGGCTTCTCGACAGTTTAGGT 59.032 47.619 0.00 0.00 0.00 3.08
65 66 2.996621 CCTTGGCTTCTCGACAGTTTAG 59.003 50.000 0.00 0.00 0.00 1.85
66 67 2.367567 ACCTTGGCTTCTCGACAGTTTA 59.632 45.455 0.00 0.00 0.00 2.01
68 69 0.759346 ACCTTGGCTTCTCGACAGTT 59.241 50.000 0.00 0.00 0.00 3.16
69 70 0.759346 AACCTTGGCTTCTCGACAGT 59.241 50.000 0.00 0.00 0.00 3.55
70 71 1.270305 TGAACCTTGGCTTCTCGACAG 60.270 52.381 0.00 0.00 0.00 3.51
71 72 0.756294 TGAACCTTGGCTTCTCGACA 59.244 50.000 0.00 0.00 0.00 4.35
72 73 1.149148 GTGAACCTTGGCTTCTCGAC 58.851 55.000 0.00 0.00 0.00 4.20
73 74 0.756294 TGTGAACCTTGGCTTCTCGA 59.244 50.000 0.00 0.00 0.00 4.04
74 75 1.593196 TTGTGAACCTTGGCTTCTCG 58.407 50.000 0.00 0.00 0.00 4.04
75 76 3.355626 GTTTGTGAACCTTGGCTTCTC 57.644 47.619 0.00 0.00 0.00 2.87
93 94 3.756933 ATACGTGTACAACTGGTGGTT 57.243 42.857 0.00 0.00 38.93 3.67
120 121 1.654137 GACGCGGTTGCACAACAAG 60.654 57.895 12.47 9.30 42.85 3.16
123 124 4.659874 CCGACGCGGTTGCACAAC 62.660 66.667 12.47 4.92 42.73 3.32
154 155 5.522456 ACTTGATACGTCGTTTCACAGTTA 58.478 37.500 16.61 3.12 0.00 2.24
165 166 4.256140 ACTCGTTCTACTTGATACGTCG 57.744 45.455 0.00 0.00 33.88 5.12
175 176 3.341823 ACGTACATGGACTCGTTCTACT 58.658 45.455 6.49 0.00 32.62 2.57
186 187 6.096423 GCCATTAGAGGATATACGTACATGGA 59.904 42.308 11.48 0.00 0.00 3.41
191 192 8.447924 TCTATGCCATTAGAGGATATACGTAC 57.552 38.462 0.00 0.00 0.00 3.67
192 193 8.678593 CTCTATGCCATTAGAGGATATACGTA 57.321 38.462 0.00 0.00 40.95 3.57
193 194 7.575414 CTCTATGCCATTAGAGGATATACGT 57.425 40.000 0.00 0.00 40.95 3.57
223 224 2.812011 GTCTGTGGCGTTAAATGAAGGT 59.188 45.455 0.00 0.00 0.00 3.50
224 225 2.159707 CGTCTGTGGCGTTAAATGAAGG 60.160 50.000 0.00 0.00 0.00 3.46
250 251 2.716217 ACACGGTCCAGTACTACTACC 58.284 52.381 0.00 2.70 0.00 3.18
447 522 1.733041 CACCCACTGCACGTACTCG 60.733 63.158 0.00 0.00 43.34 4.18
454 529 1.524008 GCTTAACCCACCCACTGCAC 61.524 60.000 0.00 0.00 0.00 4.57
455 530 1.228429 GCTTAACCCACCCACTGCA 60.228 57.895 0.00 0.00 0.00 4.41
456 531 1.074951 AGCTTAACCCACCCACTGC 59.925 57.895 0.00 0.00 0.00 4.40
457 532 0.609131 CCAGCTTAACCCACCCACTG 60.609 60.000 0.00 0.00 0.00 3.66
458 533 1.767692 CCAGCTTAACCCACCCACT 59.232 57.895 0.00 0.00 0.00 4.00
532 618 8.610248 TTTTATTCACACAGAAAACCGATCTA 57.390 30.769 0.00 0.00 40.22 1.98
533 619 7.504924 TTTTATTCACACAGAAAACCGATCT 57.495 32.000 0.00 0.00 40.22 2.75
534 620 8.073768 TCTTTTTATTCACACAGAAAACCGATC 58.926 33.333 0.00 0.00 40.22 3.69
535 621 7.936584 TCTTTTTATTCACACAGAAAACCGAT 58.063 30.769 0.00 0.00 40.22 4.18
538 624 6.923508 CCCTCTTTTTATTCACACAGAAAACC 59.076 38.462 0.00 0.00 40.22 3.27
655 836 0.179073 AAGAGCATCGACCATTCCGG 60.179 55.000 0.00 0.00 42.67 5.14
833 1117 0.179171 TCGATCTCGTCACTTTCCGC 60.179 55.000 0.00 0.00 40.80 5.54
854 1138 2.246761 TTTAGGGCATCGGGGTCGTG 62.247 60.000 0.00 0.00 37.69 4.35
909 1195 3.848272 TGTTCTCGGGCATTTCATTTC 57.152 42.857 0.00 0.00 0.00 2.17
1242 1592 2.895039 CGTGTACGCTTGTGGTTCT 58.105 52.632 4.67 0.00 0.00 3.01
1258 1608 3.058160 GAACATGGGCTGCTGCGT 61.058 61.111 9.65 0.00 40.82 5.24
1259 1609 2.262471 GAAGAACATGGGCTGCTGCG 62.262 60.000 9.65 0.00 40.82 5.18
1288 1638 3.128188 CTCCTGCTGCTGCTGCTG 61.128 66.667 27.67 25.97 40.48 4.41
1300 1650 2.327200 TGCATCTGCTGATTCTCCTG 57.673 50.000 2.92 0.00 42.66 3.86
1301 1651 2.920524 CTTGCATCTGCTGATTCTCCT 58.079 47.619 2.92 0.00 42.66 3.69
1302 1652 1.334243 GCTTGCATCTGCTGATTCTCC 59.666 52.381 2.92 0.00 42.66 3.71
1303 1653 2.290464 AGCTTGCATCTGCTGATTCTC 58.710 47.619 2.92 0.00 42.66 2.87
1304 1654 2.421751 AGCTTGCATCTGCTGATTCT 57.578 45.000 2.92 0.00 42.66 2.40
1305 1655 3.376234 TGTAAGCTTGCATCTGCTGATTC 59.624 43.478 13.67 0.00 42.66 2.52
1381 1731 4.988598 CGGCGCCCTGAACACAGT 62.989 66.667 23.46 0.00 0.00 3.55
1722 2072 0.865769 CGACCTCGTTTGGGAAGTTG 59.134 55.000 0.00 0.00 34.11 3.16
2133 2483 5.581085 GCTCATTCACAGTAAATAACCGTCT 59.419 40.000 0.00 0.00 0.00 4.18
2134 2484 5.581085 AGCTCATTCACAGTAAATAACCGTC 59.419 40.000 0.00 0.00 0.00 4.79
2135 2485 5.351465 CAGCTCATTCACAGTAAATAACCGT 59.649 40.000 0.00 0.00 0.00 4.83
2142 2492 3.788227 ACCCAGCTCATTCACAGTAAA 57.212 42.857 0.00 0.00 0.00 2.01
2145 2495 1.421268 TGAACCCAGCTCATTCACAGT 59.579 47.619 0.67 0.00 0.00 3.55
2154 2504 3.572255 TGTTTATTGGTTGAACCCAGCTC 59.428 43.478 12.53 0.00 37.50 4.09
2162 2512 5.606348 ACAAAGCCTGTTTATTGGTTGAA 57.394 34.783 0.00 0.00 32.99 2.69
2164 2514 6.512297 ACTAACAAAGCCTGTTTATTGGTTG 58.488 36.000 7.06 0.00 46.49 3.77
2184 2534 3.114668 TGCGGCTGTCAACTAAACTAA 57.885 42.857 0.00 0.00 0.00 2.24
2209 2559 1.601171 GTCCCAGCATGCAGAGAGT 59.399 57.895 21.98 0.00 31.97 3.24
2245 2595 6.257849 CGCACACATTACACCTATCATTAAGT 59.742 38.462 0.00 0.00 0.00 2.24
2285 2635 2.353109 GCATCGATCCATCCGATCTTCA 60.353 50.000 0.00 0.00 44.66 3.02
2297 2647 6.366630 GCTTATTCTTTACAAGCATCGATCC 58.633 40.000 0.00 0.00 43.29 3.36
2390 2740 9.019656 ACAGTATAAATGTACCATGCAAAAGAA 57.980 29.630 0.00 0.00 0.00 2.52
2391 2741 8.574251 ACAGTATAAATGTACCATGCAAAAGA 57.426 30.769 0.00 0.00 0.00 2.52
2394 2744 9.402320 ACATACAGTATAAATGTACCATGCAAA 57.598 29.630 0.00 0.00 36.04 3.68
2395 2745 8.835439 CACATACAGTATAAATGTACCATGCAA 58.165 33.333 0.00 0.00 36.04 4.08
2396 2746 8.207545 TCACATACAGTATAAATGTACCATGCA 58.792 33.333 0.00 0.00 36.04 3.96
2397 2747 8.601845 TCACATACAGTATAAATGTACCATGC 57.398 34.615 0.00 0.00 36.04 4.06
2417 2767 9.159254 TCCCTTAAGATCATTGTAGTATCACAT 57.841 33.333 3.36 0.00 0.00 3.21
2418 2768 8.547481 TCCCTTAAGATCATTGTAGTATCACA 57.453 34.615 3.36 0.00 0.00 3.58
2419 2769 8.861086 TCTCCCTTAAGATCATTGTAGTATCAC 58.139 37.037 3.36 0.00 0.00 3.06
2421 2771 8.308207 GGTCTCCCTTAAGATCATTGTAGTATC 58.692 40.741 3.36 0.00 0.00 2.24
2422 2772 7.039644 CGGTCTCCCTTAAGATCATTGTAGTAT 60.040 40.741 3.36 0.00 0.00 2.12
2423 2773 6.264744 CGGTCTCCCTTAAGATCATTGTAGTA 59.735 42.308 3.36 0.00 0.00 1.82
2424 2774 5.069251 CGGTCTCCCTTAAGATCATTGTAGT 59.931 44.000 3.36 0.00 0.00 2.73
2425 2775 5.509840 CCGGTCTCCCTTAAGATCATTGTAG 60.510 48.000 3.36 0.00 0.00 2.74
2428 2778 3.134804 ACCGGTCTCCCTTAAGATCATTG 59.865 47.826 0.00 0.00 0.00 2.82
2430 2780 2.966516 GACCGGTCTCCCTTAAGATCAT 59.033 50.000 27.64 0.00 0.00 2.45
2431 2781 2.291996 TGACCGGTCTCCCTTAAGATCA 60.292 50.000 33.39 7.93 0.00 2.92
2433 2783 2.544844 TGACCGGTCTCCCTTAAGAT 57.455 50.000 33.39 0.00 0.00 2.40
2434 2784 2.314071 TTGACCGGTCTCCCTTAAGA 57.686 50.000 33.39 8.80 0.00 2.10
2435 2785 3.629142 ATTTGACCGGTCTCCCTTAAG 57.371 47.619 33.39 0.00 0.00 1.85
2438 2788 4.586306 ATTAATTTGACCGGTCTCCCTT 57.414 40.909 33.39 22.15 0.00 3.95
2439 2789 4.586306 AATTAATTTGACCGGTCTCCCT 57.414 40.909 33.39 18.34 0.00 4.20
2452 2802 8.707839 CACACCGTATTTTCTGCAAATTAATTT 58.292 29.630 7.64 7.64 36.43 1.82
2456 2806 6.561737 TCACACCGTATTTTCTGCAAATTA 57.438 33.333 0.00 0.00 36.43 1.40
2457 2807 5.446143 TCACACCGTATTTTCTGCAAATT 57.554 34.783 0.00 0.00 36.43 1.82
2458 2808 5.415701 AGATCACACCGTATTTTCTGCAAAT 59.584 36.000 0.00 0.00 38.69 2.32
2459 2809 4.759693 AGATCACACCGTATTTTCTGCAAA 59.240 37.500 0.00 0.00 0.00 3.68
2460 2810 4.323417 AGATCACACCGTATTTTCTGCAA 58.677 39.130 0.00 0.00 0.00 4.08
2461 2811 3.937814 AGATCACACCGTATTTTCTGCA 58.062 40.909 0.00 0.00 0.00 4.41
2462 2812 4.946784 AAGATCACACCGTATTTTCTGC 57.053 40.909 0.00 0.00 0.00 4.26
2491 2841 9.190317 TGTATATAACCATATGCACCAAACAAA 57.810 29.630 0.00 0.00 35.55 2.83
2492 2842 8.753497 TGTATATAACCATATGCACCAAACAA 57.247 30.769 0.00 0.00 35.55 2.83
2493 2843 8.753497 TTGTATATAACCATATGCACCAAACA 57.247 30.769 0.00 0.00 38.83 2.83
2494 2844 8.296713 CCTTGTATATAACCATATGCACCAAAC 58.703 37.037 0.00 0.00 38.83 2.93
2498 2848 8.630054 TTTCCTTGTATATAACCATATGCACC 57.370 34.615 0.00 0.00 38.83 5.01
2546 2896 6.459923 TGTTTGCCATTTCCCACTATTTTAC 58.540 36.000 0.00 0.00 0.00 2.01
2547 2897 6.495181 TCTGTTTGCCATTTCCCACTATTTTA 59.505 34.615 0.00 0.00 0.00 1.52
2549 2899 4.837860 TCTGTTTGCCATTTCCCACTATTT 59.162 37.500 0.00 0.00 0.00 1.40
2550 2900 4.415596 TCTGTTTGCCATTTCCCACTATT 58.584 39.130 0.00 0.00 0.00 1.73
2552 2902 3.517296 TCTGTTTGCCATTTCCCACTA 57.483 42.857 0.00 0.00 0.00 2.74
2554 2904 3.683365 ATTCTGTTTGCCATTTCCCAC 57.317 42.857 0.00 0.00 0.00 4.61
2555 2905 4.703379 AAATTCTGTTTGCCATTTCCCA 57.297 36.364 0.00 0.00 0.00 4.37
2567 2917 8.907222 ATAGCATTTCCAAACAAAATTCTGTT 57.093 26.923 0.00 0.00 41.31 3.16
2570 2920 6.813152 CCGATAGCATTTCCAAACAAAATTCT 59.187 34.615 0.00 0.00 0.00 2.40
2574 2924 5.461032 ACCGATAGCATTTCCAAACAAAA 57.539 34.783 0.00 0.00 0.00 2.44
2576 2926 6.767524 ATTACCGATAGCATTTCCAAACAA 57.232 33.333 0.00 0.00 0.00 2.83
2588 2939 4.041740 TGGCATCGATATTACCGATAGC 57.958 45.455 0.00 0.29 43.93 2.97
2589 2940 6.183360 GGTTTTGGCATCGATATTACCGATAG 60.183 42.308 0.00 0.00 43.93 2.08
2660 3013 8.812329 CAAACATCAGAGTAGAAACATAGTAGC 58.188 37.037 0.00 0.00 0.00 3.58
2674 3034 8.798859 ATTCAGTAATTAGCAAACATCAGAGT 57.201 30.769 0.00 0.00 0.00 3.24
2701 3097 0.466543 TATTCGCCGCCCATGTTAGT 59.533 50.000 0.00 0.00 0.00 2.24
2703 3099 0.466543 AGTATTCGCCGCCCATGTTA 59.533 50.000 0.00 0.00 0.00 2.41
2709 3105 1.529865 GAATTACAGTATTCGCCGCCC 59.470 52.381 0.00 0.00 0.00 6.13
2715 3111 6.929049 TCCCTTGCTATGAATTACAGTATTCG 59.071 38.462 0.00 0.00 37.34 3.34
2716 3112 7.715249 TGTCCCTTGCTATGAATTACAGTATTC 59.285 37.037 0.00 0.00 35.54 1.75
2717 3113 7.499232 GTGTCCCTTGCTATGAATTACAGTATT 59.501 37.037 0.00 0.00 0.00 1.89
2719 3115 6.070481 TGTGTCCCTTGCTATGAATTACAGTA 60.070 38.462 0.00 0.00 0.00 2.74
2720 3116 5.186198 GTGTCCCTTGCTATGAATTACAGT 58.814 41.667 0.00 0.00 0.00 3.55
2721 3117 5.185454 TGTGTCCCTTGCTATGAATTACAG 58.815 41.667 0.00 0.00 0.00 2.74
2722 3118 5.172687 TGTGTCCCTTGCTATGAATTACA 57.827 39.130 0.00 0.00 0.00 2.41
2723 3119 6.318648 TGATTGTGTCCCTTGCTATGAATTAC 59.681 38.462 0.00 0.00 0.00 1.89
2729 3125 2.684881 GGTGATTGTGTCCCTTGCTATG 59.315 50.000 0.00 0.00 0.00 2.23
2731 3127 1.702401 TGGTGATTGTGTCCCTTGCTA 59.298 47.619 0.00 0.00 0.00 3.49
2746 3142 3.569194 TTGTCCTTTGCTTACTGGTGA 57.431 42.857 0.00 0.00 0.00 4.02
2749 3145 5.163561 TGTTCTTTTGTCCTTTGCTTACTGG 60.164 40.000 0.00 0.00 0.00 4.00
2786 3182 1.960417 GCTTGAAGCCCTATCTGGAC 58.040 55.000 5.74 0.00 38.35 4.02
2806 3202 4.678287 TCAAGTGTAAGCTACGAAAACTCG 59.322 41.667 0.00 0.00 39.31 4.18
2854 3250 0.825010 CTAGGGCATGGGGTCAATGC 60.825 60.000 0.00 0.00 40.34 3.56
2978 3375 3.014110 GGGAGGGGAGGGAGATCATATAA 59.986 52.174 0.00 0.00 0.00 0.98
3011 3416 2.991190 GTTGAAAGTTCCTGCATGCATG 59.009 45.455 22.97 22.70 0.00 4.06
3033 3438 2.034558 GTGCATGCATGTTGGGTATACC 59.965 50.000 25.64 13.99 40.81 2.73
3039 3444 1.546589 AAGGGTGCATGCATGTTGGG 61.547 55.000 25.64 2.38 0.00 4.12
3040 3445 0.322322 AAAGGGTGCATGCATGTTGG 59.678 50.000 25.64 2.78 0.00 3.77
3081 3492 9.900710 GAATCTAAGATTACGTATGTGTGAGAT 57.099 33.333 0.00 0.00 0.00 2.75
3084 3495 6.635641 GCGAATCTAAGATTACGTATGTGTGA 59.364 38.462 0.00 0.00 0.00 3.58
3085 3496 6.416750 TGCGAATCTAAGATTACGTATGTGTG 59.583 38.462 0.00 0.00 0.00 3.82
3086 3497 6.500910 TGCGAATCTAAGATTACGTATGTGT 58.499 36.000 0.00 0.00 0.00 3.72
3087 3498 6.088217 CCTGCGAATCTAAGATTACGTATGTG 59.912 42.308 0.00 0.00 0.00 3.21
3088 3499 6.150318 CCTGCGAATCTAAGATTACGTATGT 58.850 40.000 0.00 0.00 0.00 2.29
3089 3500 5.573282 CCCTGCGAATCTAAGATTACGTATG 59.427 44.000 0.00 0.00 0.00 2.39
3090 3501 5.243283 ACCCTGCGAATCTAAGATTACGTAT 59.757 40.000 0.00 0.00 0.00 3.06
3091 3502 4.581824 ACCCTGCGAATCTAAGATTACGTA 59.418 41.667 0.00 0.00 0.00 3.57
3092 3503 3.383825 ACCCTGCGAATCTAAGATTACGT 59.616 43.478 0.00 0.00 0.00 3.57
3093 3504 3.978687 ACCCTGCGAATCTAAGATTACG 58.021 45.455 0.00 0.00 0.00 3.18
3094 3505 6.086785 AGTACCCTGCGAATCTAAGATTAC 57.913 41.667 0.00 0.00 0.00 1.89
3095 3506 6.726490 AAGTACCCTGCGAATCTAAGATTA 57.274 37.500 0.00 0.00 0.00 1.75
3096 3507 5.615925 AAGTACCCTGCGAATCTAAGATT 57.384 39.130 0.00 0.00 0.00 2.40
3097 3508 5.279056 GCTAAGTACCCTGCGAATCTAAGAT 60.279 44.000 0.00 0.00 0.00 2.40
3098 3509 4.037684 GCTAAGTACCCTGCGAATCTAAGA 59.962 45.833 0.00 0.00 0.00 2.10
3099 3510 4.038162 AGCTAAGTACCCTGCGAATCTAAG 59.962 45.833 0.00 0.00 0.00 2.18
3100 3511 3.958798 AGCTAAGTACCCTGCGAATCTAA 59.041 43.478 0.00 0.00 0.00 2.10
3101 3512 3.563223 AGCTAAGTACCCTGCGAATCTA 58.437 45.455 0.00 0.00 0.00 1.98
3102 3513 2.362717 GAGCTAAGTACCCTGCGAATCT 59.637 50.000 0.00 0.00 0.00 2.40
3103 3514 2.546162 GGAGCTAAGTACCCTGCGAATC 60.546 54.545 0.00 0.00 0.00 2.52
3104 3515 1.413077 GGAGCTAAGTACCCTGCGAAT 59.587 52.381 0.00 0.00 0.00 3.34
3105 3516 0.822164 GGAGCTAAGTACCCTGCGAA 59.178 55.000 0.00 0.00 0.00 4.70
3106 3517 0.323999 TGGAGCTAAGTACCCTGCGA 60.324 55.000 0.00 0.00 0.00 5.10
3107 3518 0.179108 GTGGAGCTAAGTACCCTGCG 60.179 60.000 0.00 0.00 0.00 5.18
3108 3519 0.179108 CGTGGAGCTAAGTACCCTGC 60.179 60.000 0.00 0.00 0.00 4.85
3109 3520 1.183549 ACGTGGAGCTAAGTACCCTG 58.816 55.000 0.00 0.00 0.00 4.45
3110 3521 2.373224 GTACGTGGAGCTAAGTACCCT 58.627 52.381 0.00 0.00 34.90 4.34
3111 3522 1.064654 CGTACGTGGAGCTAAGTACCC 59.935 57.143 7.22 0.00 36.91 3.69
3112 3523 1.740025 ACGTACGTGGAGCTAAGTACC 59.260 52.381 22.14 0.00 36.91 3.34
3113 3524 3.542291 CGTACGTACGTGGAGCTAAGTAC 60.542 52.174 33.95 14.88 44.13 2.73
3114 3525 2.603110 CGTACGTACGTGGAGCTAAGTA 59.397 50.000 33.95 3.44 44.13 2.24
3115 3526 1.394917 CGTACGTACGTGGAGCTAAGT 59.605 52.381 33.95 1.85 44.13 2.24
3116 3527 2.082733 CGTACGTACGTGGAGCTAAG 57.917 55.000 33.95 8.11 44.13 2.18
3130 3541 7.459276 CTCGAAACTGAGATTACGTACGTACG 61.459 46.154 38.49 38.49 45.47 3.67
3131 3542 5.550981 TCGAAACTGAGATTACGTACGTAC 58.449 41.667 26.83 16.61 0.00 3.67
3132 3543 5.725042 GCTCGAAACTGAGATTACGTACGTA 60.725 44.000 23.60 23.60 38.28 3.57
3133 3544 4.645956 CTCGAAACTGAGATTACGTACGT 58.354 43.478 25.98 25.98 38.28 3.57
3134 3545 3.477802 GCTCGAAACTGAGATTACGTACG 59.522 47.826 15.01 15.01 38.28 3.67
3135 3546 3.477802 CGCTCGAAACTGAGATTACGTAC 59.522 47.826 0.00 0.00 38.28 3.67
3136 3547 3.371898 TCGCTCGAAACTGAGATTACGTA 59.628 43.478 0.00 0.00 38.28 3.57
3137 3548 2.161012 TCGCTCGAAACTGAGATTACGT 59.839 45.455 0.00 0.00 38.28 3.57
3138 3549 2.782163 TCGCTCGAAACTGAGATTACG 58.218 47.619 0.00 0.00 38.28 3.18
3139 3550 4.352039 TCATCGCTCGAAACTGAGATTAC 58.648 43.478 0.00 0.00 38.28 1.89
3140 3551 4.335594 TCTCATCGCTCGAAACTGAGATTA 59.664 41.667 15.78 0.77 38.28 1.75
3141 3552 3.129462 TCTCATCGCTCGAAACTGAGATT 59.871 43.478 15.78 0.00 38.28 2.40
3142 3553 2.685388 TCTCATCGCTCGAAACTGAGAT 59.315 45.455 15.78 0.00 38.28 2.75
3143 3554 2.084546 TCTCATCGCTCGAAACTGAGA 58.915 47.619 15.78 15.78 38.28 3.27
3144 3555 2.551355 TCTCATCGCTCGAAACTGAG 57.449 50.000 12.57 12.57 39.05 3.35
3145 3556 2.030274 TGTTCTCATCGCTCGAAACTGA 60.030 45.455 0.00 0.00 0.00 3.41
3146 3557 2.328473 TGTTCTCATCGCTCGAAACTG 58.672 47.619 0.00 0.00 0.00 3.16
3147 3558 2.724977 TGTTCTCATCGCTCGAAACT 57.275 45.000 0.00 0.00 0.00 2.66
3148 3559 3.663908 CATTGTTCTCATCGCTCGAAAC 58.336 45.455 0.00 0.00 0.00 2.78
3149 3560 2.094258 GCATTGTTCTCATCGCTCGAAA 59.906 45.455 0.00 0.00 0.00 3.46
3150 3561 1.660607 GCATTGTTCTCATCGCTCGAA 59.339 47.619 0.00 0.00 0.00 3.71
3151 3562 1.280982 GCATTGTTCTCATCGCTCGA 58.719 50.000 0.00 0.00 0.00 4.04
3152 3563 0.043566 CGCATTGTTCTCATCGCTCG 60.044 55.000 0.00 0.00 0.00 5.03
3153 3564 0.302890 CCGCATTGTTCTCATCGCTC 59.697 55.000 0.00 0.00 0.00 5.03
3154 3565 1.709147 GCCGCATTGTTCTCATCGCT 61.709 55.000 0.00 0.00 0.00 4.93
3155 3566 1.297893 GCCGCATTGTTCTCATCGC 60.298 57.895 0.00 0.00 0.00 4.58
3156 3567 1.011904 CGCCGCATTGTTCTCATCG 60.012 57.895 0.00 0.00 0.00 3.84
3157 3568 0.726827 TTCGCCGCATTGTTCTCATC 59.273 50.000 0.00 0.00 0.00 2.92
3158 3569 0.447801 GTTCGCCGCATTGTTCTCAT 59.552 50.000 0.00 0.00 0.00 2.90
3159 3570 1.573829 GGTTCGCCGCATTGTTCTCA 61.574 55.000 0.00 0.00 0.00 3.27
3160 3571 1.134694 GGTTCGCCGCATTGTTCTC 59.865 57.895 0.00 0.00 0.00 2.87
3161 3572 1.169661 TTGGTTCGCCGCATTGTTCT 61.170 50.000 0.00 0.00 41.18 3.01
3162 3573 1.001745 GTTGGTTCGCCGCATTGTTC 61.002 55.000 0.00 0.00 41.18 3.18
3163 3574 1.007849 GTTGGTTCGCCGCATTGTT 60.008 52.632 0.00 0.00 41.18 2.83
3164 3575 2.642700 GTTGGTTCGCCGCATTGT 59.357 55.556 0.00 0.00 41.18 2.71
3165 3576 2.126502 GGTTGGTTCGCCGCATTG 60.127 61.111 0.00 0.00 41.18 2.82
3166 3577 2.282180 AGGTTGGTTCGCCGCATT 60.282 55.556 0.00 0.00 41.18 3.56
3167 3578 3.055719 CAGGTTGGTTCGCCGCAT 61.056 61.111 0.00 0.00 41.18 4.73
3168 3579 4.555709 ACAGGTTGGTTCGCCGCA 62.556 61.111 0.00 0.00 41.18 5.69
3169 3580 4.025401 CACAGGTTGGTTCGCCGC 62.025 66.667 0.00 0.00 41.18 6.53
3170 3581 3.353836 CCACAGGTTGGTTCGCCG 61.354 66.667 0.00 0.00 41.10 6.46
3180 3591 2.344592 TCTAACCATCCAACCACAGGT 58.655 47.619 0.00 0.00 37.65 4.00
3181 3592 3.282021 CATCTAACCATCCAACCACAGG 58.718 50.000 0.00 0.00 0.00 4.00
3182 3593 3.054434 TCCATCTAACCATCCAACCACAG 60.054 47.826 0.00 0.00 0.00 3.66
3183 3594 2.916269 TCCATCTAACCATCCAACCACA 59.084 45.455 0.00 0.00 0.00 4.17
3184 3595 3.054361 AGTCCATCTAACCATCCAACCAC 60.054 47.826 0.00 0.00 0.00 4.16
3185 3596 3.054434 CAGTCCATCTAACCATCCAACCA 60.054 47.826 0.00 0.00 0.00 3.67
3186 3597 3.054361 ACAGTCCATCTAACCATCCAACC 60.054 47.826 0.00 0.00 0.00 3.77
3187 3598 3.941483 CACAGTCCATCTAACCATCCAAC 59.059 47.826 0.00 0.00 0.00 3.77
3188 3599 3.054434 CCACAGTCCATCTAACCATCCAA 60.054 47.826 0.00 0.00 0.00 3.53
3189 3600 2.505407 CCACAGTCCATCTAACCATCCA 59.495 50.000 0.00 0.00 0.00 3.41
3190 3601 2.505819 ACCACAGTCCATCTAACCATCC 59.494 50.000 0.00 0.00 0.00 3.51
3191 3602 3.914426 ACCACAGTCCATCTAACCATC 57.086 47.619 0.00 0.00 0.00 3.51
3192 3603 4.348168 GGATACCACAGTCCATCTAACCAT 59.652 45.833 0.00 0.00 34.57 3.55
3193 3604 3.709653 GGATACCACAGTCCATCTAACCA 59.290 47.826 0.00 0.00 34.57 3.67
3194 3605 4.338379 GGATACCACAGTCCATCTAACC 57.662 50.000 0.00 0.00 34.57 2.85
3210 3621 2.757124 CCTGGTGGGCTGGGGATAC 61.757 68.421 0.00 0.00 0.00 2.24
3211 3622 2.368192 CCTGGTGGGCTGGGGATA 60.368 66.667 0.00 0.00 0.00 2.59
3221 3632 0.250901 CAGGACTTGAACCCTGGTGG 60.251 60.000 0.00 0.00 44.68 4.61
3222 3633 3.329300 CAGGACTTGAACCCTGGTG 57.671 57.895 0.00 0.00 44.68 4.17
3226 3637 1.062488 AGCACCAGGACTTGAACCCT 61.062 55.000 0.00 0.00 0.00 4.34
3227 3638 0.606673 GAGCACCAGGACTTGAACCC 60.607 60.000 0.00 0.00 0.00 4.11
3228 3639 0.951040 CGAGCACCAGGACTTGAACC 60.951 60.000 0.00 0.00 0.00 3.62
3229 3640 0.951040 CCGAGCACCAGGACTTGAAC 60.951 60.000 0.00 0.00 0.00 3.18
3230 3641 1.118965 TCCGAGCACCAGGACTTGAA 61.119 55.000 0.00 0.00 0.00 2.69
3231 3642 0.904865 ATCCGAGCACCAGGACTTGA 60.905 55.000 0.00 0.00 39.66 3.02
3232 3643 0.036010 AATCCGAGCACCAGGACTTG 60.036 55.000 0.00 0.00 39.66 3.16
3233 3644 0.693049 AAATCCGAGCACCAGGACTT 59.307 50.000 0.00 0.00 39.66 3.01
3234 3645 0.250513 GAAATCCGAGCACCAGGACT 59.749 55.000 0.00 0.00 39.66 3.85
3235 3646 0.744771 GGAAATCCGAGCACCAGGAC 60.745 60.000 0.00 0.00 39.66 3.85
3236 3647 1.602237 GGAAATCCGAGCACCAGGA 59.398 57.895 0.00 0.00 41.30 3.86
3237 3648 4.225497 GGAAATCCGAGCACCAGG 57.775 61.111 0.00 0.00 0.00 4.45
3257 3668 0.583438 CTCCCACTAAATGCGCATCG 59.417 55.000 25.53 17.09 0.00 3.84
3258 3669 0.947244 CCTCCCACTAAATGCGCATC 59.053 55.000 25.53 0.00 0.00 3.91
3259 3670 0.546122 TCCTCCCACTAAATGCGCAT 59.454 50.000 19.28 19.28 0.00 4.73
3260 3671 0.107703 CTCCTCCCACTAAATGCGCA 60.108 55.000 14.96 14.96 0.00 6.09
3261 3672 0.178068 TCTCCTCCCACTAAATGCGC 59.822 55.000 0.00 0.00 0.00 6.09
3262 3673 1.802880 CGTCTCCTCCCACTAAATGCG 60.803 57.143 0.00 0.00 0.00 4.73
3263 3674 1.207329 ACGTCTCCTCCCACTAAATGC 59.793 52.381 0.00 0.00 0.00 3.56
3264 3675 3.522553 GAACGTCTCCTCCCACTAAATG 58.477 50.000 0.00 0.00 0.00 2.32
3265 3676 2.500504 GGAACGTCTCCTCCCACTAAAT 59.499 50.000 8.87 0.00 41.61 1.40
3266 3677 1.897802 GGAACGTCTCCTCCCACTAAA 59.102 52.381 8.87 0.00 41.61 1.85
3267 3678 1.553706 GGAACGTCTCCTCCCACTAA 58.446 55.000 8.87 0.00 41.61 2.24
3268 3679 3.277962 GGAACGTCTCCTCCCACTA 57.722 57.895 8.87 0.00 41.61 2.74
3269 3680 4.115270 GGAACGTCTCCTCCCACT 57.885 61.111 8.87 0.00 41.61 4.00
3288 3699 0.851198 GTAAGCGTCTCGTCGTCGAC 60.851 60.000 15.51 15.51 41.35 4.20
3289 3700 1.417592 GTAAGCGTCTCGTCGTCGA 59.582 57.895 4.42 4.42 44.12 4.20
3290 3701 1.922220 CGTAAGCGTCTCGTCGTCG 60.922 63.158 0.00 0.00 38.55 5.12
3291 3702 1.579626 CCGTAAGCGTCTCGTCGTC 60.580 63.158 0.00 0.00 36.15 4.20
3292 3703 2.320587 ACCGTAAGCGTCTCGTCGT 61.321 57.895 0.00 0.00 36.15 4.34
3293 3704 1.862147 CACCGTAAGCGTCTCGTCG 60.862 63.158 0.00 0.00 36.15 5.12
3294 3705 0.792356 GTCACCGTAAGCGTCTCGTC 60.792 60.000 0.00 0.00 36.15 4.20
3295 3706 1.208614 GTCACCGTAAGCGTCTCGT 59.791 57.895 0.00 0.00 36.15 4.18
3296 3707 0.109873 AAGTCACCGTAAGCGTCTCG 60.110 55.000 0.00 0.00 36.15 4.04
3297 3708 1.615502 GAAGTCACCGTAAGCGTCTC 58.384 55.000 0.00 0.00 36.15 3.36
3298 3709 0.109873 CGAAGTCACCGTAAGCGTCT 60.110 55.000 0.00 0.00 36.15 4.18
3299 3710 0.386478 ACGAAGTCACCGTAAGCGTC 60.386 55.000 0.00 0.00 29.74 5.19
3300 3711 0.874390 TACGAAGTCACCGTAAGCGT 59.126 50.000 0.00 0.00 43.93 5.07
3301 3712 1.967762 TTACGAAGTCACCGTAAGCG 58.032 50.000 0.00 0.00 44.40 4.68
3304 3715 6.700960 TCTTGAAATTTACGAAGTCACCGTAA 59.299 34.615 0.00 0.00 46.58 3.18
3305 3716 6.215121 TCTTGAAATTTACGAAGTCACCGTA 58.785 36.000 0.00 0.00 43.93 4.02
3306 3717 5.051816 TCTTGAAATTTACGAAGTCACCGT 58.948 37.500 0.00 0.00 43.93 4.83
3307 3718 5.585500 TCTTGAAATTTACGAAGTCACCG 57.415 39.130 0.00 0.00 43.93 4.94
3308 3719 7.129109 TCATCTTGAAATTTACGAAGTCACC 57.871 36.000 0.00 0.00 43.93 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.