Multiple sequence alignment - TraesCS2A01G411400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G411400 chr2A 100.000 2507 0 0 1 2507 669497641 669500147 0.000000e+00 4630
1 TraesCS2A01G411400 chr2D 83.592 1804 123 70 514 2270 523647502 523649179 0.000000e+00 1531
2 TraesCS2A01G411400 chr2D 93.379 438 14 6 13 446 523647075 523647501 3.520000e-178 634
3 TraesCS2A01G411400 chr2D 95.699 93 4 0 8 100 523646980 523647072 1.550000e-32 150
4 TraesCS2A01G411400 chr2B 92.598 743 34 7 873 1615 618052177 618052898 0.000000e+00 1048
5 TraesCS2A01G411400 chr2B 87.359 886 62 21 1 876 618051297 618052142 0.000000e+00 970
6 TraesCS2A01G411400 chr2B 92.575 633 30 10 1646 2264 618054332 618054961 0.000000e+00 893


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G411400 chr2A 669497641 669500147 2506 False 4630.000000 4630 100.000 1 2507 1 chr2A.!!$F1 2506
1 TraesCS2A01G411400 chr2D 523646980 523649179 2199 False 771.666667 1531 90.890 8 2270 3 chr2D.!!$F1 2262
2 TraesCS2A01G411400 chr2B 618051297 618054961 3664 False 970.333333 1048 90.844 1 2264 3 chr2B.!!$F1 2263

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
464 563 0.321919 CCGGATGGAGGGTGCATATG 60.322 60.0 0.0 0.0 37.49 1.78 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1546 1694 0.098376 GGCTCGATCGAACACTACGT 59.902 55.0 19.92 0.0 0.0 3.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
387 481 9.469807 TTTTTGTGCACCATAAATACTTAACAG 57.530 29.630 15.69 0.00 0.00 3.16
435 532 3.969287 AGCTAGCACTGATCTCAACAA 57.031 42.857 18.83 0.00 0.00 2.83
438 535 4.453819 AGCTAGCACTGATCTCAACAAAAC 59.546 41.667 18.83 0.00 0.00 2.43
439 536 4.453819 GCTAGCACTGATCTCAACAAAACT 59.546 41.667 10.63 0.00 0.00 2.66
442 541 6.942532 AGCACTGATCTCAACAAAACTAAA 57.057 33.333 0.00 0.00 0.00 1.85
461 560 4.195334 GCCGGATGGAGGGTGCAT 62.195 66.667 5.05 0.00 37.49 3.96
464 563 0.321919 CCGGATGGAGGGTGCATATG 60.322 60.000 0.00 0.00 37.49 1.78
479 578 2.889045 GCATATGCATGGGTGTTCAGAT 59.111 45.455 22.84 0.00 41.59 2.90
494 593 6.712547 GGTGTTCAGATAAATCCCCTATCAAG 59.287 42.308 0.00 0.00 0.00 3.02
496 595 7.442666 GTGTTCAGATAAATCCCCTATCAAGTC 59.557 40.741 0.00 0.00 0.00 3.01
497 596 6.346477 TCAGATAAATCCCCTATCAAGTCG 57.654 41.667 0.00 0.00 0.00 4.18
502 601 5.896073 AAATCCCCTATCAAGTCGAGATT 57.104 39.130 0.00 0.00 0.00 2.40
504 603 7.560796 AAATCCCCTATCAAGTCGAGATTAT 57.439 36.000 0.00 0.00 0.00 1.28
505 604 8.666129 AAATCCCCTATCAAGTCGAGATTATA 57.334 34.615 0.00 0.00 0.00 0.98
506 605 7.648039 ATCCCCTATCAAGTCGAGATTATAC 57.352 40.000 0.00 0.00 0.00 1.47
509 608 8.047911 TCCCCTATCAAGTCGAGATTATACTAG 58.952 40.741 0.00 0.00 0.00 2.57
510 609 7.283580 CCCCTATCAAGTCGAGATTATACTAGG 59.716 44.444 0.00 0.00 0.00 3.02
511 610 7.830201 CCCTATCAAGTCGAGATTATACTAGGT 59.170 40.741 0.00 0.00 0.00 3.08
530 629 4.347607 AGGTAGTAGTTGTACGGGTTCAT 58.652 43.478 0.00 0.00 33.97 2.57
539 642 2.631062 TGTACGGGTTCATCAGTTCAGT 59.369 45.455 0.00 0.00 0.00 3.41
547 650 5.011023 GGGTTCATCAGTTCAGTTTCCAATT 59.989 40.000 0.00 0.00 0.00 2.32
549 652 6.239008 GGTTCATCAGTTCAGTTTCCAATTGA 60.239 38.462 7.12 0.00 0.00 2.57
557 660 3.003275 TCAGTTTCCAATTGAACACGCTC 59.997 43.478 7.12 0.00 31.05 5.03
580 684 4.021894 CACAACTAGTGCTCCTACTCAAGT 60.022 45.833 0.00 0.00 42.15 3.16
581 685 5.183331 CACAACTAGTGCTCCTACTCAAGTA 59.817 44.000 0.00 0.00 42.15 2.24
589 693 6.836527 AGTGCTCCTACTCAAGTATACTCATT 59.163 38.462 5.70 0.00 0.00 2.57
593 697 7.255173 GCTCCTACTCAAGTATACTCATTTCGA 60.255 40.741 5.70 0.00 0.00 3.71
602 706 9.140286 CAAGTATACTCATTTCGAAAAGTGAGA 57.860 33.333 32.83 22.06 46.66 3.27
656 761 2.341846 AGGAACTTTTGCTCGACCAA 57.658 45.000 0.00 0.00 27.25 3.67
710 815 2.113860 ATGCGTAATCACAGCCTGTT 57.886 45.000 0.00 0.00 0.00 3.16
779 888 6.338937 ACAGTACAAAAGAAAGAAGACGAGT 58.661 36.000 0.00 0.00 0.00 4.18
823 932 4.210746 GTCGTAGAACTTTTGGGAGACAAC 59.789 45.833 0.00 0.00 39.69 3.32
854 963 4.095334 CCAACAACTTTATAGTAACCGGGC 59.905 45.833 6.32 0.00 33.17 6.13
1014 1162 4.478371 CCCATGAGGCTCGCTGCA 62.478 66.667 10.42 0.00 45.15 4.41
1029 1177 1.678101 GCTGCAACTTCCAGTGTTCTT 59.322 47.619 0.00 0.00 32.93 2.52
1045 1193 3.454447 TGTTCTTGTCACCCTCTTCTTCA 59.546 43.478 0.00 0.00 0.00 3.02
1117 1265 2.357517 CGGGCAGTTCAAGCGAGT 60.358 61.111 0.00 0.00 0.00 4.18
1188 1336 6.424509 TGCATTGAAGCAACTTAATTTCCTTG 59.575 34.615 0.00 0.00 42.46 3.61
1216 1364 9.959749 ATCTAAAAGAGTGTCTTTATCGATCTC 57.040 33.333 0.00 0.00 45.19 2.75
1230 1378 8.420374 TTTATCGATCTCATTGGTTGTTCTAC 57.580 34.615 0.00 0.00 0.00 2.59
1231 1379 5.661056 TCGATCTCATTGGTTGTTCTACT 57.339 39.130 0.00 0.00 0.00 2.57
1232 1380 6.037786 TCGATCTCATTGGTTGTTCTACTT 57.962 37.500 0.00 0.00 0.00 2.24
1233 1381 5.869344 TCGATCTCATTGGTTGTTCTACTTG 59.131 40.000 0.00 0.00 0.00 3.16
1264 1412 7.120923 ACTAACTCACAGTCCTTAAACTTGA 57.879 36.000 0.00 0.00 0.00 3.02
1283 1431 1.139853 GAAGGCTGATGGTTCTCCGAT 59.860 52.381 0.00 0.00 36.30 4.18
1329 1477 1.766143 CGGACGCTAAGGATGCTTGC 61.766 60.000 10.10 10.06 0.00 4.01
1358 1506 1.750341 TTCGACGCCAAGGTGAAGGA 61.750 55.000 6.67 0.00 0.00 3.36
1359 1507 1.738099 CGACGCCAAGGTGAAGGAG 60.738 63.158 6.67 0.00 0.00 3.69
1370 1518 3.003763 GAAGGAGGGAGTGGCGGT 61.004 66.667 0.00 0.00 0.00 5.68
1413 1561 1.134729 GCGGTTATCGGTAGGGTTTCA 60.135 52.381 0.00 0.00 39.69 2.69
1519 1667 3.253921 TCACAACTGATGCATGAGTTTGG 59.746 43.478 26.27 20.47 31.83 3.28
1543 1691 7.235399 TGGGATGTTTGCTCTCTATGTATATGA 59.765 37.037 0.00 0.00 0.00 2.15
1544 1692 7.763528 GGGATGTTTGCTCTCTATGTATATGAG 59.236 40.741 0.00 0.00 0.00 2.90
1545 1693 8.310382 GGATGTTTGCTCTCTATGTATATGAGT 58.690 37.037 0.00 0.00 0.00 3.41
1548 1696 8.290325 TGTTTGCTCTCTATGTATATGAGTACG 58.710 37.037 0.00 0.00 0.00 3.67
1549 1697 7.981102 TTGCTCTCTATGTATATGAGTACGT 57.019 36.000 0.00 0.00 0.00 3.57
1586 1734 2.416547 CCTATTTCTGTGTCTGCAACCG 59.583 50.000 0.00 0.00 0.00 4.44
1753 3306 1.304052 GTGCACCCTGCCACCATTA 60.304 57.895 5.22 0.00 44.23 1.90
1779 3332 2.376808 ATCTCTGGCAGTCAACTTCG 57.623 50.000 15.27 0.00 0.00 3.79
1827 3385 0.678048 GTCTTCCCCTGCCATGTCAC 60.678 60.000 0.00 0.00 0.00 3.67
1932 3492 3.345808 CACTGTTGGCCGTCACCG 61.346 66.667 0.00 0.00 0.00 4.94
2012 3574 7.556275 CCTAGCCCTAATTTGACTATTTTGTCA 59.444 37.037 0.00 0.00 44.17 3.58
2046 3611 1.534175 CGAGTACTCCATCTTCACGGC 60.534 57.143 17.23 0.00 0.00 5.68
2164 3747 7.380602 CGCCTATCAGAAATGAATTTTTGATCC 59.619 37.037 19.41 11.60 43.75 3.36
2224 3807 2.266554 CTGACAACTCGCTCCATTCTC 58.733 52.381 0.00 0.00 0.00 2.87
2265 3848 7.021790 GCCTAAGAATCTCCTAAAACAAAACG 58.978 38.462 0.00 0.00 0.00 3.60
2270 3853 9.516314 AAGAATCTCCTAAAACAAAACGAAAAG 57.484 29.630 0.00 0.00 0.00 2.27
2271 3854 8.135529 AGAATCTCCTAAAACAAAACGAAAAGG 58.864 33.333 0.00 0.00 0.00 3.11
2272 3855 6.139048 TCTCCTAAAACAAAACGAAAAGGG 57.861 37.500 0.00 0.00 0.00 3.95
2273 3856 4.684877 TCCTAAAACAAAACGAAAAGGGC 58.315 39.130 0.00 0.00 0.00 5.19
2274 3857 3.487942 CCTAAAACAAAACGAAAAGGGCG 59.512 43.478 0.00 0.00 0.00 6.13
2275 3858 2.658373 AAACAAAACGAAAAGGGCGT 57.342 40.000 0.00 0.00 44.94 5.68
2276 3859 3.779271 AAACAAAACGAAAAGGGCGTA 57.221 38.095 0.00 0.00 41.75 4.42
2277 3860 3.994204 AACAAAACGAAAAGGGCGTAT 57.006 38.095 0.00 0.00 41.75 3.06
2278 3861 5.435820 AAACAAAACGAAAAGGGCGTATA 57.564 34.783 0.00 0.00 41.75 1.47
2279 3862 5.435820 AACAAAACGAAAAGGGCGTATAA 57.564 34.783 0.00 0.00 41.75 0.98
2280 3863 5.632244 ACAAAACGAAAAGGGCGTATAAT 57.368 34.783 0.00 0.00 41.75 1.28
2281 3864 6.740411 ACAAAACGAAAAGGGCGTATAATA 57.260 33.333 0.00 0.00 41.75 0.98
2282 3865 6.545508 ACAAAACGAAAAGGGCGTATAATAC 58.454 36.000 0.00 0.00 41.75 1.89
2283 3866 6.149142 ACAAAACGAAAAGGGCGTATAATACA 59.851 34.615 0.00 0.00 41.75 2.29
2284 3867 6.930667 AAACGAAAAGGGCGTATAATACAT 57.069 33.333 0.00 0.00 41.75 2.29
2285 3868 6.930667 AACGAAAAGGGCGTATAATACATT 57.069 33.333 0.00 0.00 41.75 2.71
2286 3869 6.295039 ACGAAAAGGGCGTATAATACATTG 57.705 37.500 0.00 0.00 40.65 2.82
2287 3870 5.237779 ACGAAAAGGGCGTATAATACATTGG 59.762 40.000 0.00 0.00 40.65 3.16
2288 3871 5.334569 CGAAAAGGGCGTATAATACATTGGG 60.335 44.000 0.00 0.00 0.00 4.12
2289 3872 4.986054 AAGGGCGTATAATACATTGGGA 57.014 40.909 0.00 0.00 0.00 4.37
2290 3873 4.986054 AGGGCGTATAATACATTGGGAA 57.014 40.909 0.00 0.00 0.00 3.97
2291 3874 5.514500 AGGGCGTATAATACATTGGGAAT 57.486 39.130 0.00 0.00 0.00 3.01
2292 3875 5.253330 AGGGCGTATAATACATTGGGAATG 58.747 41.667 0.00 0.00 44.48 2.67
2293 3876 4.398044 GGGCGTATAATACATTGGGAATGG 59.602 45.833 0.00 0.00 43.21 3.16
2294 3877 5.250200 GGCGTATAATACATTGGGAATGGA 58.750 41.667 0.00 0.00 43.21 3.41
2295 3878 5.354234 GGCGTATAATACATTGGGAATGGAG 59.646 44.000 0.00 0.00 43.21 3.86
2296 3879 6.170506 GCGTATAATACATTGGGAATGGAGA 58.829 40.000 0.00 0.00 43.21 3.71
2297 3880 6.653320 GCGTATAATACATTGGGAATGGAGAA 59.347 38.462 0.00 0.00 43.21 2.87
2298 3881 7.148407 GCGTATAATACATTGGGAATGGAGAAG 60.148 40.741 0.00 0.00 43.21 2.85
2299 3882 7.878127 CGTATAATACATTGGGAATGGAGAAGT 59.122 37.037 0.00 0.00 43.21 3.01
2302 3885 6.831664 ATACATTGGGAATGGAGAAGTACT 57.168 37.500 0.00 0.00 43.21 2.73
2303 3886 4.848357 ACATTGGGAATGGAGAAGTACTG 58.152 43.478 0.00 0.00 43.21 2.74
2304 3887 3.350219 TTGGGAATGGAGAAGTACTGC 57.650 47.619 0.00 0.00 37.47 4.40
2305 3888 2.551270 TGGGAATGGAGAAGTACTGCT 58.449 47.619 1.84 1.84 37.83 4.24
2306 3889 3.719871 TGGGAATGGAGAAGTACTGCTA 58.280 45.455 2.36 0.00 37.83 3.49
2307 3890 3.451178 TGGGAATGGAGAAGTACTGCTAC 59.549 47.826 6.08 6.08 37.83 3.58
2308 3891 3.707102 GGGAATGGAGAAGTACTGCTACT 59.293 47.826 14.64 3.51 37.83 2.57
2309 3892 4.162509 GGGAATGGAGAAGTACTGCTACTT 59.837 45.833 14.64 5.10 44.54 2.24
2310 3893 5.363005 GGGAATGGAGAAGTACTGCTACTTA 59.637 44.000 14.64 0.00 42.33 2.24
2311 3894 6.042208 GGGAATGGAGAAGTACTGCTACTTAT 59.958 42.308 14.64 0.00 42.33 1.73
2312 3895 7.232941 GGGAATGGAGAAGTACTGCTACTTATA 59.767 40.741 14.64 0.00 42.33 0.98
2313 3896 8.301002 GGAATGGAGAAGTACTGCTACTTATAG 58.699 40.741 14.64 0.00 42.33 1.31
2314 3897 8.998277 AATGGAGAAGTACTGCTACTTATAGA 57.002 34.615 14.64 0.00 42.33 1.98
2315 3898 9.594936 AATGGAGAAGTACTGCTACTTATAGAT 57.405 33.333 14.64 0.00 42.33 1.98
2326 3909 8.837737 ACTGCTACTTATAGATATAGGACAGGA 58.162 37.037 0.00 4.47 0.00 3.86
2327 3910 9.688091 CTGCTACTTATAGATATAGGACAGGAA 57.312 37.037 0.00 0.00 0.00 3.36
2342 3925 9.927081 ATAGGACAGGAAAAATATCTCAAACAT 57.073 29.630 0.00 0.00 0.00 2.71
2343 3926 8.286191 AGGACAGGAAAAATATCTCAAACATC 57.714 34.615 0.00 0.00 0.00 3.06
2344 3927 7.890127 AGGACAGGAAAAATATCTCAAACATCA 59.110 33.333 0.00 0.00 0.00 3.07
2345 3928 8.186821 GGACAGGAAAAATATCTCAAACATCAG 58.813 37.037 0.00 0.00 0.00 2.90
2346 3929 8.059798 ACAGGAAAAATATCTCAAACATCAGG 57.940 34.615 0.00 0.00 0.00 3.86
2347 3930 6.976925 CAGGAAAAATATCTCAAACATCAGGC 59.023 38.462 0.00 0.00 0.00 4.85
2348 3931 6.664816 AGGAAAAATATCTCAAACATCAGGCA 59.335 34.615 0.00 0.00 0.00 4.75
2349 3932 7.178983 AGGAAAAATATCTCAAACATCAGGCAA 59.821 33.333 0.00 0.00 0.00 4.52
2350 3933 7.818930 GGAAAAATATCTCAAACATCAGGCAAA 59.181 33.333 0.00 0.00 0.00 3.68
2351 3934 8.538409 AAAAATATCTCAAACATCAGGCAAAC 57.462 30.769 0.00 0.00 0.00 2.93
2352 3935 3.837213 ATCTCAAACATCAGGCAAACG 57.163 42.857 0.00 0.00 0.00 3.60
2353 3936 2.844946 TCTCAAACATCAGGCAAACGA 58.155 42.857 0.00 0.00 0.00 3.85
2354 3937 3.210227 TCTCAAACATCAGGCAAACGAA 58.790 40.909 0.00 0.00 0.00 3.85
2355 3938 3.250762 TCTCAAACATCAGGCAAACGAAG 59.749 43.478 0.00 0.00 0.00 3.79
2356 3939 3.210227 TCAAACATCAGGCAAACGAAGA 58.790 40.909 0.00 0.00 0.00 2.87
2357 3940 3.629855 TCAAACATCAGGCAAACGAAGAA 59.370 39.130 0.00 0.00 0.00 2.52
2358 3941 4.097135 TCAAACATCAGGCAAACGAAGAAA 59.903 37.500 0.00 0.00 0.00 2.52
2359 3942 4.647424 AACATCAGGCAAACGAAGAAAA 57.353 36.364 0.00 0.00 0.00 2.29
2360 3943 4.647424 ACATCAGGCAAACGAAGAAAAA 57.353 36.364 0.00 0.00 0.00 1.94
2361 3944 4.610945 ACATCAGGCAAACGAAGAAAAAG 58.389 39.130 0.00 0.00 0.00 2.27
2362 3945 3.708563 TCAGGCAAACGAAGAAAAAGG 57.291 42.857 0.00 0.00 0.00 3.11
2363 3946 3.020984 TCAGGCAAACGAAGAAAAAGGT 58.979 40.909 0.00 0.00 0.00 3.50
2364 3947 4.200874 TCAGGCAAACGAAGAAAAAGGTA 58.799 39.130 0.00 0.00 0.00 3.08
2365 3948 4.641094 TCAGGCAAACGAAGAAAAAGGTAA 59.359 37.500 0.00 0.00 0.00 2.85
2366 3949 5.125739 TCAGGCAAACGAAGAAAAAGGTAAA 59.874 36.000 0.00 0.00 0.00 2.01
2367 3950 5.808030 CAGGCAAACGAAGAAAAAGGTAAAA 59.192 36.000 0.00 0.00 0.00 1.52
2368 3951 5.808540 AGGCAAACGAAGAAAAAGGTAAAAC 59.191 36.000 0.00 0.00 0.00 2.43
2369 3952 5.577554 GGCAAACGAAGAAAAAGGTAAAACA 59.422 36.000 0.00 0.00 0.00 2.83
2370 3953 6.454583 GGCAAACGAAGAAAAAGGTAAAACAC 60.455 38.462 0.00 0.00 0.00 3.32
2371 3954 6.309494 GCAAACGAAGAAAAAGGTAAAACACT 59.691 34.615 0.00 0.00 0.00 3.55
2372 3955 7.462331 GCAAACGAAGAAAAAGGTAAAACACTC 60.462 37.037 0.00 0.00 0.00 3.51
2373 3956 6.127810 ACGAAGAAAAAGGTAAAACACTCC 57.872 37.500 0.00 0.00 0.00 3.85
2374 3957 5.648960 ACGAAGAAAAAGGTAAAACACTCCA 59.351 36.000 0.00 0.00 0.00 3.86
2375 3958 6.320418 ACGAAGAAAAAGGTAAAACACTCCAT 59.680 34.615 0.00 0.00 0.00 3.41
2376 3959 7.147966 ACGAAGAAAAAGGTAAAACACTCCATT 60.148 33.333 0.00 0.00 0.00 3.16
2377 3960 7.704899 CGAAGAAAAAGGTAAAACACTCCATTT 59.295 33.333 0.00 0.00 0.00 2.32
2378 3961 9.378551 GAAGAAAAAGGTAAAACACTCCATTTT 57.621 29.630 0.00 0.00 35.71 1.82
2379 3962 8.716646 AGAAAAAGGTAAAACACTCCATTTTG 57.283 30.769 0.00 0.00 34.03 2.44
2380 3963 7.768582 AGAAAAAGGTAAAACACTCCATTTTGG 59.231 33.333 0.00 0.00 39.43 3.28
2381 3964 6.800072 AAAGGTAAAACACTCCATTTTGGA 57.200 33.333 0.00 0.00 45.98 3.53
2425 4008 6.479095 AAAAACACCAACAAGTTTCACATG 57.521 33.333 0.00 0.00 36.98 3.21
2426 4009 3.163630 ACACCAACAAGTTTCACATGC 57.836 42.857 0.00 0.00 0.00 4.06
2427 4010 2.495270 ACACCAACAAGTTTCACATGCA 59.505 40.909 0.00 0.00 0.00 3.96
2428 4011 3.132646 ACACCAACAAGTTTCACATGCAT 59.867 39.130 0.00 0.00 0.00 3.96
2429 4012 3.491639 CACCAACAAGTTTCACATGCATG 59.508 43.478 25.09 25.09 0.00 4.06
2430 4013 3.384146 ACCAACAAGTTTCACATGCATGA 59.616 39.130 32.75 10.12 0.00 3.07
2431 4014 3.737266 CCAACAAGTTTCACATGCATGAC 59.263 43.478 32.75 19.57 0.00 3.06
2432 4015 4.500205 CCAACAAGTTTCACATGCATGACT 60.500 41.667 32.75 21.47 0.00 3.41
2433 4016 4.924305 ACAAGTTTCACATGCATGACTT 57.076 36.364 32.75 25.50 0.00 3.01
2434 4017 6.207928 CAACAAGTTTCACATGCATGACTTA 58.792 36.000 32.75 12.29 0.00 2.24
2435 4018 6.579666 ACAAGTTTCACATGCATGACTTAT 57.420 33.333 32.75 17.43 0.00 1.73
2436 4019 6.985117 ACAAGTTTCACATGCATGACTTATT 58.015 32.000 32.75 16.94 0.00 1.40
2437 4020 8.109705 ACAAGTTTCACATGCATGACTTATTA 57.890 30.769 32.75 8.35 0.00 0.98
2438 4021 8.742777 ACAAGTTTCACATGCATGACTTATTAT 58.257 29.630 32.75 13.70 0.00 1.28
2439 4022 9.577110 CAAGTTTCACATGCATGACTTATTATT 57.423 29.630 32.75 13.76 0.00 1.40
2441 4024 9.577110 AGTTTCACATGCATGACTTATTATTTG 57.423 29.630 32.75 15.83 0.00 2.32
2442 4025 9.571810 GTTTCACATGCATGACTTATTATTTGA 57.428 29.630 32.75 17.82 0.00 2.69
2447 4030 9.537192 ACATGCATGACTTATTATTTGAAATGG 57.463 29.630 32.75 0.00 0.00 3.16
2448 4031 9.752961 CATGCATGACTTATTATTTGAAATGGA 57.247 29.630 22.59 0.00 0.00 3.41
2449 4032 9.976511 ATGCATGACTTATTATTTGAAATGGAG 57.023 29.630 0.00 0.00 0.00 3.86
2450 4033 8.970020 TGCATGACTTATTATTTGAAATGGAGT 58.030 29.630 0.00 0.00 0.00 3.85
2451 4034 9.241317 GCATGACTTATTATTTGAAATGGAGTG 57.759 33.333 0.00 0.00 0.00 3.51
2454 4037 9.739276 TGACTTATTATTTGAAATGGAGTGAGT 57.261 29.630 0.00 0.00 0.00 3.41
2475 4058 9.556030 GTGAGTTAAAATTAATAACTGGACAGC 57.444 33.333 16.92 6.39 42.18 4.40
2476 4059 8.447833 TGAGTTAAAATTAATAACTGGACAGCG 58.552 33.333 16.92 0.00 42.18 5.18
2477 4060 8.556213 AGTTAAAATTAATAACTGGACAGCGA 57.444 30.769 13.10 0.00 40.97 4.93
2478 4061 9.005777 AGTTAAAATTAATAACTGGACAGCGAA 57.994 29.630 13.10 0.00 40.97 4.70
2479 4062 9.274065 GTTAAAATTAATAACTGGACAGCGAAG 57.726 33.333 0.00 0.00 31.92 3.79
2480 4063 6.436843 AAATTAATAACTGGACAGCGAAGG 57.563 37.500 0.00 0.00 0.00 3.46
2481 4064 4.811969 TTAATAACTGGACAGCGAAGGA 57.188 40.909 0.00 0.00 0.00 3.36
2482 4065 2.674796 ATAACTGGACAGCGAAGGAC 57.325 50.000 0.00 0.00 0.00 3.85
2483 4066 1.629043 TAACTGGACAGCGAAGGACT 58.371 50.000 0.00 0.00 0.00 3.85
2484 4067 1.629043 AACTGGACAGCGAAGGACTA 58.371 50.000 0.00 0.00 0.00 2.59
2485 4068 1.853963 ACTGGACAGCGAAGGACTAT 58.146 50.000 0.00 0.00 0.00 2.12
2486 4069 1.478510 ACTGGACAGCGAAGGACTATG 59.521 52.381 0.00 0.00 0.00 2.23
2487 4070 0.824109 TGGACAGCGAAGGACTATGG 59.176 55.000 0.00 0.00 0.00 2.74
2488 4071 1.112113 GGACAGCGAAGGACTATGGA 58.888 55.000 0.00 0.00 0.00 3.41
2489 4072 1.689273 GGACAGCGAAGGACTATGGAT 59.311 52.381 0.00 0.00 0.00 3.41
2490 4073 2.546795 GGACAGCGAAGGACTATGGATG 60.547 54.545 0.00 0.00 0.00 3.51
2491 4074 1.202580 ACAGCGAAGGACTATGGATGC 60.203 52.381 0.00 0.00 0.00 3.91
2492 4075 0.394565 AGCGAAGGACTATGGATGCC 59.605 55.000 0.00 0.00 0.00 4.40
2493 4076 0.394565 GCGAAGGACTATGGATGCCT 59.605 55.000 0.00 0.00 0.00 4.75
2494 4077 1.875576 GCGAAGGACTATGGATGCCTG 60.876 57.143 0.00 0.00 0.00 4.85
2495 4078 1.414181 CGAAGGACTATGGATGCCTGT 59.586 52.381 0.00 0.00 0.00 4.00
2496 4079 2.546795 CGAAGGACTATGGATGCCTGTC 60.547 54.545 0.00 0.00 0.00 3.51
2497 4080 1.428869 AGGACTATGGATGCCTGTCC 58.571 55.000 10.78 10.78 45.31 4.02
2498 4081 0.398318 GGACTATGGATGCCTGTCCC 59.602 60.000 8.49 0.00 40.74 4.46
2499 4082 1.428869 GACTATGGATGCCTGTCCCT 58.571 55.000 0.00 0.00 37.48 4.20
2500 4083 1.771255 GACTATGGATGCCTGTCCCTT 59.229 52.381 0.00 0.00 37.48 3.95
2501 4084 1.492176 ACTATGGATGCCTGTCCCTTG 59.508 52.381 0.00 0.00 37.48 3.61
2502 4085 1.770658 CTATGGATGCCTGTCCCTTGA 59.229 52.381 0.00 0.00 37.48 3.02
2503 4086 0.257039 ATGGATGCCTGTCCCTTGAC 59.743 55.000 0.00 0.00 42.12 3.18
2504 4087 0.842030 TGGATGCCTGTCCCTTGACT 60.842 55.000 0.00 0.00 42.28 3.41
2505 4088 0.329596 GGATGCCTGTCCCTTGACTT 59.670 55.000 0.00 0.00 42.28 3.01
2506 4089 1.559682 GGATGCCTGTCCCTTGACTTA 59.440 52.381 0.00 0.00 42.28 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 6.046593 AGTTGTGTGAAGTATCTTGTTTCGA 58.953 36.000 0.00 0.00 0.00 3.71
10 11 6.479990 TCAGTCAAGTTGTGTGAAGTATCTTG 59.520 38.462 2.11 0.00 34.19 3.02
262 354 4.154918 GCAACTAGTGTCTTTGCAAGCTAT 59.845 41.667 10.85 0.00 44.17 2.97
284 376 5.545658 TGTCTCTCCAATTTCATTAACGC 57.454 39.130 0.00 0.00 0.00 4.84
379 473 7.436673 CGCTTCATAGAATAAGCTCTGTTAAGT 59.563 37.037 5.62 0.00 44.72 2.24
380 474 7.649705 TCGCTTCATAGAATAAGCTCTGTTAAG 59.350 37.037 5.62 0.00 44.72 1.85
381 475 7.489160 TCGCTTCATAGAATAAGCTCTGTTAA 58.511 34.615 5.62 0.00 44.72 2.01
382 476 7.039313 TCGCTTCATAGAATAAGCTCTGTTA 57.961 36.000 5.62 0.00 44.72 2.41
383 477 5.907207 TCGCTTCATAGAATAAGCTCTGTT 58.093 37.500 5.62 0.00 44.72 3.16
384 478 5.521906 TCGCTTCATAGAATAAGCTCTGT 57.478 39.130 5.62 0.00 44.72 3.41
385 479 6.212235 TCTTCGCTTCATAGAATAAGCTCTG 58.788 40.000 5.62 0.00 44.72 3.35
386 480 6.398234 TCTTCGCTTCATAGAATAAGCTCT 57.602 37.500 5.62 0.00 44.72 4.09
387 481 8.026607 ACTATCTTCGCTTCATAGAATAAGCTC 58.973 37.037 5.62 0.00 44.72 4.09
406 503 6.775142 TGAGATCAGTGCTAGCTTACTATCTT 59.225 38.462 17.23 0.00 0.00 2.40
435 532 2.620627 CCCTCCATCCGGCTTTTAGTTT 60.621 50.000 0.00 0.00 0.00 2.66
438 535 0.546598 ACCCTCCATCCGGCTTTTAG 59.453 55.000 0.00 0.00 0.00 1.85
439 536 0.254747 CACCCTCCATCCGGCTTTTA 59.745 55.000 0.00 0.00 0.00 1.52
442 541 4.115199 GCACCCTCCATCCGGCTT 62.115 66.667 0.00 0.00 0.00 4.35
461 560 5.769662 GGATTTATCTGAACACCCATGCATA 59.230 40.000 0.00 0.00 0.00 3.14
464 563 3.319122 GGGATTTATCTGAACACCCATGC 59.681 47.826 0.00 0.00 36.27 4.06
470 569 7.283329 ACTTGATAGGGGATTTATCTGAACAC 58.717 38.462 0.00 0.00 0.00 3.32
479 578 6.996180 AATCTCGACTTGATAGGGGATTTA 57.004 37.500 0.00 0.00 0.00 1.40
494 593 9.487790 ACAACTACTACCTAGTATAATCTCGAC 57.512 37.037 0.00 0.00 38.06 4.20
502 601 7.374975 ACCCGTACAACTACTACCTAGTATA 57.625 40.000 0.00 0.00 38.06 1.47
504 603 5.693769 ACCCGTACAACTACTACCTAGTA 57.306 43.478 0.00 0.00 34.26 1.82
505 604 4.576330 ACCCGTACAACTACTACCTAGT 57.424 45.455 0.00 0.00 37.28 2.57
506 605 4.943705 TGAACCCGTACAACTACTACCTAG 59.056 45.833 0.00 0.00 0.00 3.02
509 608 4.158394 TGATGAACCCGTACAACTACTACC 59.842 45.833 0.00 0.00 0.00 3.18
510 609 5.105997 ACTGATGAACCCGTACAACTACTAC 60.106 44.000 0.00 0.00 0.00 2.73
511 610 5.012239 ACTGATGAACCCGTACAACTACTA 58.988 41.667 0.00 0.00 0.00 1.82
523 622 3.486383 TGGAAACTGAACTGATGAACCC 58.514 45.455 0.00 0.00 0.00 4.11
530 629 5.448496 CGTGTTCAATTGGAAACTGAACTGA 60.448 40.000 13.46 0.00 45.91 3.41
539 642 2.685388 TGTGAGCGTGTTCAATTGGAAA 59.315 40.909 5.42 0.00 37.23 3.13
547 650 2.882927 ACTAGTTGTGAGCGTGTTCA 57.117 45.000 0.00 0.00 0.00 3.18
557 660 6.127591 ATACTTGAGTAGGAGCACTAGTTGTG 60.128 42.308 0.00 0.00 40.56 3.33
581 685 9.057089 AGTTTTCTCACTTTTCGAAATGAGTAT 57.943 29.630 28.04 15.23 39.68 2.12
589 693 7.280205 AGCTAGAAAGTTTTCTCACTTTTCGAA 59.720 33.333 10.20 0.00 45.23 3.71
593 697 7.770897 TGAGAGCTAGAAAGTTTTCTCACTTTT 59.229 33.333 10.20 3.55 45.23 2.27
602 706 7.094592 GGCTGTTAATGAGAGCTAGAAAGTTTT 60.095 37.037 0.00 0.00 43.82 2.43
656 761 0.616679 TAGCGCCCTAAAGACCACCT 60.617 55.000 2.29 0.00 0.00 4.00
710 815 3.491639 CGTAGTTCGTGTTCCAACAATCA 59.508 43.478 0.00 0.00 41.21 2.57
733 842 3.441222 TCATCAATGGTGAGAACATGCAC 59.559 43.478 0.00 0.00 37.14 4.57
737 846 4.914983 ACTGTCATCAATGGTGAGAACAT 58.085 39.130 0.00 0.00 37.14 2.71
752 861 6.984474 TCGTCTTCTTTCTTTTGTACTGTCAT 59.016 34.615 0.00 0.00 0.00 3.06
779 888 3.447742 CACAGCTAACGATGATGTGCTA 58.552 45.455 10.90 0.00 43.24 3.49
823 932 8.665685 GTTACTATAAAGTTGTTGGTGAGGATG 58.334 37.037 0.00 0.00 37.15 3.51
963 1111 2.028130 CTTAACCCCGGCATTGCAATA 58.972 47.619 12.53 0.00 0.00 1.90
964 1112 0.823460 CTTAACCCCGGCATTGCAAT 59.177 50.000 5.99 5.99 0.00 3.56
1029 1177 2.373169 AGCAATGAAGAAGAGGGTGACA 59.627 45.455 0.00 0.00 0.00 3.58
1045 1193 1.632409 TGAGCCAAGGAAGAGAGCAAT 59.368 47.619 0.00 0.00 0.00 3.56
1103 1251 0.601311 AGGTGACTCGCTTGAACTGC 60.601 55.000 0.00 0.00 32.90 4.40
1196 1344 6.983307 CCAATGAGATCGATAAAGACACTCTT 59.017 38.462 0.00 0.00 38.59 2.85
1197 1345 6.097554 ACCAATGAGATCGATAAAGACACTCT 59.902 38.462 0.00 0.00 32.29 3.24
1198 1346 6.276847 ACCAATGAGATCGATAAAGACACTC 58.723 40.000 0.00 0.00 0.00 3.51
1201 1349 6.406370 ACAACCAATGAGATCGATAAAGACA 58.594 36.000 0.00 0.00 0.00 3.41
1216 1364 6.377327 ACAACTCAAGTAGAACAACCAATG 57.623 37.500 0.00 0.00 0.00 2.82
1233 1381 5.708877 AGGACTGTGAGTTAGTACAACTC 57.291 43.478 21.48 21.48 45.12 3.01
1264 1412 1.207791 ATCGGAGAACCATCAGCCTT 58.792 50.000 0.00 0.00 43.58 4.35
1283 1431 3.382227 TGATAGATCGTTCGGCTGGTTTA 59.618 43.478 0.00 0.00 0.00 2.01
1329 1477 0.718904 TGGCGTCGAAATGATCAACG 59.281 50.000 11.58 11.58 0.00 4.10
1370 1518 2.501128 GAGCTGCGCCTGATGGTA 59.499 61.111 4.18 0.00 35.27 3.25
1391 1539 0.977108 AACCCTACCGATAACCGCCA 60.977 55.000 0.00 0.00 36.84 5.69
1392 1540 0.178767 AAACCCTACCGATAACCGCC 59.821 55.000 0.00 0.00 36.84 6.13
1413 1561 1.144057 CCTATGAGAAAGCCGCCGT 59.856 57.895 0.00 0.00 0.00 5.68
1519 1667 8.310382 ACTCATATACATAGAGAGCAAACATCC 58.690 37.037 0.00 0.00 33.69 3.51
1543 1691 2.030213 GCTCGATCGAACACTACGTACT 59.970 50.000 19.92 0.00 0.00 2.73
1544 1692 2.361407 GCTCGATCGAACACTACGTAC 58.639 52.381 19.92 0.00 0.00 3.67
1545 1693 1.328680 GGCTCGATCGAACACTACGTA 59.671 52.381 19.92 0.00 0.00 3.57
1546 1694 0.098376 GGCTCGATCGAACACTACGT 59.902 55.000 19.92 0.00 0.00 3.57
1547 1695 0.591741 GGGCTCGATCGAACACTACG 60.592 60.000 19.92 6.59 0.00 3.51
1548 1696 0.739561 AGGGCTCGATCGAACACTAC 59.260 55.000 21.22 7.44 0.00 2.73
1549 1697 2.336945 TAGGGCTCGATCGAACACTA 57.663 50.000 23.12 23.12 0.00 2.74
1586 1734 5.528870 GAGTAGGCTGAAGCTAGAAAGATC 58.471 45.833 0.00 0.00 41.70 2.75
1633 3021 9.265901 CAAGAAAATATTCTAGCTAGCTTGCTA 57.734 33.333 24.88 25.04 45.19 3.49
1668 3219 9.967346 ATATGTATACTGTGTGATCTGTTACAC 57.033 33.333 4.17 7.02 45.57 2.90
1753 3306 3.051940 TGACTGCCAGAGATAGGGAAT 57.948 47.619 0.00 0.00 0.00 3.01
1779 3332 2.344025 CTGTTGTTAGGAGGTAACGGC 58.656 52.381 0.00 0.00 43.68 5.68
1816 3374 2.821366 GAGCGGGTGACATGGCAG 60.821 66.667 0.00 0.00 0.00 4.85
1827 3385 0.736053 GACTAGAGAGTGTGAGCGGG 59.264 60.000 0.00 0.00 35.45 6.13
1870 3428 1.533625 GGTTGGCAGTGCTATTGACA 58.466 50.000 16.11 0.00 0.00 3.58
1932 3492 1.275010 GCTAGAGAGATTGCTAGGGGC 59.725 57.143 0.00 0.00 42.22 5.80
2046 3611 0.323087 CCCTACTGTTTTTCCCCCGG 60.323 60.000 0.00 0.00 0.00 5.73
2224 3807 2.634982 AGGCACACGCATTACAATTG 57.365 45.000 3.24 3.24 41.24 2.32
2265 3848 5.766174 TCCCAATGTATTATACGCCCTTTTC 59.234 40.000 0.00 0.00 0.00 2.29
2269 3852 4.986054 TTCCCAATGTATTATACGCCCT 57.014 40.909 0.00 0.00 0.00 5.19
2270 3853 4.398044 CCATTCCCAATGTATTATACGCCC 59.602 45.833 0.00 0.00 37.18 6.13
2271 3854 5.250200 TCCATTCCCAATGTATTATACGCC 58.750 41.667 0.00 0.00 37.18 5.68
2272 3855 6.170506 TCTCCATTCCCAATGTATTATACGC 58.829 40.000 0.00 0.00 37.18 4.42
2273 3856 7.878127 ACTTCTCCATTCCCAATGTATTATACG 59.122 37.037 0.00 0.00 37.18 3.06
2276 3859 8.949421 AGTACTTCTCCATTCCCAATGTATTAT 58.051 33.333 0.00 0.00 37.18 1.28
2277 3860 8.210946 CAGTACTTCTCCATTCCCAATGTATTA 58.789 37.037 0.00 0.00 37.18 0.98
2278 3861 7.056635 CAGTACTTCTCCATTCCCAATGTATT 58.943 38.462 0.00 0.00 37.18 1.89
2279 3862 6.595682 CAGTACTTCTCCATTCCCAATGTAT 58.404 40.000 0.00 0.00 37.18 2.29
2280 3863 5.629133 GCAGTACTTCTCCATTCCCAATGTA 60.629 44.000 0.00 0.00 37.18 2.29
2281 3864 4.848357 CAGTACTTCTCCATTCCCAATGT 58.152 43.478 0.00 0.00 37.18 2.71
2282 3865 3.629398 GCAGTACTTCTCCATTCCCAATG 59.371 47.826 0.00 0.00 38.63 2.82
2283 3866 3.525199 AGCAGTACTTCTCCATTCCCAAT 59.475 43.478 0.00 0.00 0.00 3.16
2284 3867 2.912956 AGCAGTACTTCTCCATTCCCAA 59.087 45.455 0.00 0.00 0.00 4.12
2285 3868 2.551270 AGCAGTACTTCTCCATTCCCA 58.449 47.619 0.00 0.00 0.00 4.37
2286 3869 3.707102 AGTAGCAGTACTTCTCCATTCCC 59.293 47.826 0.00 0.00 35.88 3.97
2287 3870 5.346181 AAGTAGCAGTACTTCTCCATTCC 57.654 43.478 0.00 0.00 44.81 3.01
2288 3871 9.069082 TCTATAAGTAGCAGTACTTCTCCATTC 57.931 37.037 0.00 0.00 44.81 2.67
2289 3872 8.998277 TCTATAAGTAGCAGTACTTCTCCATT 57.002 34.615 0.00 0.00 44.81 3.16
2300 3883 8.837737 TCCTGTCCTATATCTATAAGTAGCAGT 58.162 37.037 0.00 0.00 0.00 4.40
2301 3884 9.688091 TTCCTGTCCTATATCTATAAGTAGCAG 57.312 37.037 0.00 0.00 0.00 4.24
2316 3899 9.927081 ATGTTTGAGATATTTTTCCTGTCCTAT 57.073 29.630 0.00 0.00 0.00 2.57
2317 3900 9.396022 GATGTTTGAGATATTTTTCCTGTCCTA 57.604 33.333 0.00 0.00 0.00 2.94
2318 3901 7.890127 TGATGTTTGAGATATTTTTCCTGTCCT 59.110 33.333 0.00 0.00 0.00 3.85
2319 3902 8.055279 TGATGTTTGAGATATTTTTCCTGTCC 57.945 34.615 0.00 0.00 0.00 4.02
2320 3903 8.186821 CCTGATGTTTGAGATATTTTTCCTGTC 58.813 37.037 0.00 0.00 0.00 3.51
2321 3904 7.363268 GCCTGATGTTTGAGATATTTTTCCTGT 60.363 37.037 0.00 0.00 0.00 4.00
2322 3905 6.976925 GCCTGATGTTTGAGATATTTTTCCTG 59.023 38.462 0.00 0.00 0.00 3.86
2323 3906 6.664816 TGCCTGATGTTTGAGATATTTTTCCT 59.335 34.615 0.00 0.00 0.00 3.36
2324 3907 6.866480 TGCCTGATGTTTGAGATATTTTTCC 58.134 36.000 0.00 0.00 0.00 3.13
2325 3908 8.650714 GTTTGCCTGATGTTTGAGATATTTTTC 58.349 33.333 0.00 0.00 0.00 2.29
2326 3909 7.329226 CGTTTGCCTGATGTTTGAGATATTTTT 59.671 33.333 0.00 0.00 0.00 1.94
2327 3910 6.808212 CGTTTGCCTGATGTTTGAGATATTTT 59.192 34.615 0.00 0.00 0.00 1.82
2328 3911 6.150976 TCGTTTGCCTGATGTTTGAGATATTT 59.849 34.615 0.00 0.00 0.00 1.40
2329 3912 5.647658 TCGTTTGCCTGATGTTTGAGATATT 59.352 36.000 0.00 0.00 0.00 1.28
2330 3913 5.185454 TCGTTTGCCTGATGTTTGAGATAT 58.815 37.500 0.00 0.00 0.00 1.63
2331 3914 4.574892 TCGTTTGCCTGATGTTTGAGATA 58.425 39.130 0.00 0.00 0.00 1.98
2332 3915 3.411446 TCGTTTGCCTGATGTTTGAGAT 58.589 40.909 0.00 0.00 0.00 2.75
2333 3916 2.844946 TCGTTTGCCTGATGTTTGAGA 58.155 42.857 0.00 0.00 0.00 3.27
2334 3917 3.250762 TCTTCGTTTGCCTGATGTTTGAG 59.749 43.478 0.00 0.00 0.00 3.02
2335 3918 3.210227 TCTTCGTTTGCCTGATGTTTGA 58.790 40.909 0.00 0.00 0.00 2.69
2336 3919 3.624326 TCTTCGTTTGCCTGATGTTTG 57.376 42.857 0.00 0.00 0.00 2.93
2337 3920 4.647424 TTTCTTCGTTTGCCTGATGTTT 57.353 36.364 0.00 0.00 0.00 2.83
2338 3921 4.647424 TTTTCTTCGTTTGCCTGATGTT 57.353 36.364 0.00 0.00 0.00 2.71
2339 3922 4.499696 CCTTTTTCTTCGTTTGCCTGATGT 60.500 41.667 0.00 0.00 0.00 3.06
2340 3923 3.983344 CCTTTTTCTTCGTTTGCCTGATG 59.017 43.478 0.00 0.00 0.00 3.07
2341 3924 3.636764 ACCTTTTTCTTCGTTTGCCTGAT 59.363 39.130 0.00 0.00 0.00 2.90
2342 3925 3.020984 ACCTTTTTCTTCGTTTGCCTGA 58.979 40.909 0.00 0.00 0.00 3.86
2343 3926 3.436700 ACCTTTTTCTTCGTTTGCCTG 57.563 42.857 0.00 0.00 0.00 4.85
2344 3927 5.585820 TTTACCTTTTTCTTCGTTTGCCT 57.414 34.783 0.00 0.00 0.00 4.75
2345 3928 5.577554 TGTTTTACCTTTTTCTTCGTTTGCC 59.422 36.000 0.00 0.00 0.00 4.52
2346 3929 6.309494 AGTGTTTTACCTTTTTCTTCGTTTGC 59.691 34.615 0.00 0.00 0.00 3.68
2347 3930 7.008901 GGAGTGTTTTACCTTTTTCTTCGTTTG 59.991 37.037 0.00 0.00 0.00 2.93
2348 3931 7.031372 GGAGTGTTTTACCTTTTTCTTCGTTT 58.969 34.615 0.00 0.00 0.00 3.60
2349 3932 6.151480 TGGAGTGTTTTACCTTTTTCTTCGTT 59.849 34.615 0.00 0.00 0.00 3.85
2350 3933 5.648960 TGGAGTGTTTTACCTTTTTCTTCGT 59.351 36.000 0.00 0.00 0.00 3.85
2351 3934 6.126568 TGGAGTGTTTTACCTTTTTCTTCG 57.873 37.500 0.00 0.00 0.00 3.79
2352 3935 8.942338 AAATGGAGTGTTTTACCTTTTTCTTC 57.058 30.769 0.00 0.00 30.57 2.87
2353 3936 9.161629 CAAAATGGAGTGTTTTACCTTTTTCTT 57.838 29.630 0.00 0.00 38.24 2.52
2354 3937 7.768582 CCAAAATGGAGTGTTTTACCTTTTTCT 59.231 33.333 0.00 0.00 40.96 2.52
2355 3938 7.766738 TCCAAAATGGAGTGTTTTACCTTTTTC 59.233 33.333 0.00 0.00 42.67 2.29
2356 3939 7.625469 TCCAAAATGGAGTGTTTTACCTTTTT 58.375 30.769 0.00 0.00 42.67 1.94
2357 3940 7.189079 TCCAAAATGGAGTGTTTTACCTTTT 57.811 32.000 0.00 0.00 42.67 2.27
2358 3941 6.800072 TCCAAAATGGAGTGTTTTACCTTT 57.200 33.333 0.00 0.00 42.67 3.11
2402 3985 5.106752 GCATGTGAAACTTGTTGGTGTTTTT 60.107 36.000 0.00 0.00 43.28 1.94
2403 3986 4.391523 GCATGTGAAACTTGTTGGTGTTTT 59.608 37.500 0.00 0.00 43.28 2.43
2404 3987 3.932089 GCATGTGAAACTTGTTGGTGTTT 59.068 39.130 0.00 0.00 43.28 2.83
2405 3988 3.056250 TGCATGTGAAACTTGTTGGTGTT 60.056 39.130 0.00 0.00 43.28 3.32
2406 3989 2.495270 TGCATGTGAAACTTGTTGGTGT 59.505 40.909 0.00 0.00 43.28 4.16
2407 3990 3.162202 TGCATGTGAAACTTGTTGGTG 57.838 42.857 0.00 0.00 43.28 4.17
2408 3991 3.384146 TCATGCATGTGAAACTTGTTGGT 59.616 39.130 25.43 0.00 43.28 3.67
2409 3992 3.737266 GTCATGCATGTGAAACTTGTTGG 59.263 43.478 25.43 0.00 43.28 3.77
2410 3993 4.613944 AGTCATGCATGTGAAACTTGTTG 58.386 39.130 25.43 0.00 43.28 3.33
2411 3994 4.924305 AGTCATGCATGTGAAACTTGTT 57.076 36.364 25.43 0.00 43.28 2.83
2412 3995 4.924305 AAGTCATGCATGTGAAACTTGT 57.076 36.364 25.43 5.71 43.28 3.16
2413 3996 9.577110 AATAATAAGTCATGCATGTGAAACTTG 57.423 29.630 28.48 6.76 44.10 3.16
2415 3998 9.577110 CAAATAATAAGTCATGCATGTGAAACT 57.423 29.630 25.43 18.18 38.04 2.66
2416 3999 9.571810 TCAAATAATAAGTCATGCATGTGAAAC 57.428 29.630 25.43 16.23 37.35 2.78
2421 4004 9.537192 CCATTTCAAATAATAAGTCATGCATGT 57.463 29.630 25.43 9.95 0.00 3.21
2422 4005 9.752961 TCCATTTCAAATAATAAGTCATGCATG 57.247 29.630 21.07 21.07 0.00 4.06
2423 4006 9.976511 CTCCATTTCAAATAATAAGTCATGCAT 57.023 29.630 0.00 0.00 0.00 3.96
2424 4007 8.970020 ACTCCATTTCAAATAATAAGTCATGCA 58.030 29.630 0.00 0.00 0.00 3.96
2425 4008 9.241317 CACTCCATTTCAAATAATAAGTCATGC 57.759 33.333 0.00 0.00 0.00 4.06
2428 4011 9.739276 ACTCACTCCATTTCAAATAATAAGTCA 57.261 29.630 0.00 0.00 0.00 3.41
2449 4032 9.556030 GCTGTCCAGTTATTAATTTTAACTCAC 57.444 33.333 9.40 9.64 37.71 3.51
2450 4033 8.447833 CGCTGTCCAGTTATTAATTTTAACTCA 58.552 33.333 9.40 5.97 37.71 3.41
2451 4034 8.662141 TCGCTGTCCAGTTATTAATTTTAACTC 58.338 33.333 9.40 2.79 37.71 3.01
2452 4035 8.556213 TCGCTGTCCAGTTATTAATTTTAACT 57.444 30.769 0.00 7.37 39.80 2.24
2453 4036 9.274065 CTTCGCTGTCCAGTTATTAATTTTAAC 57.726 33.333 0.00 0.00 0.00 2.01
2454 4037 8.455682 CCTTCGCTGTCCAGTTATTAATTTTAA 58.544 33.333 0.00 0.00 0.00 1.52
2455 4038 7.825270 TCCTTCGCTGTCCAGTTATTAATTTTA 59.175 33.333 0.00 0.00 0.00 1.52
2456 4039 6.657541 TCCTTCGCTGTCCAGTTATTAATTTT 59.342 34.615 0.00 0.00 0.00 1.82
2457 4040 6.093633 GTCCTTCGCTGTCCAGTTATTAATTT 59.906 38.462 0.00 0.00 0.00 1.82
2458 4041 5.585047 GTCCTTCGCTGTCCAGTTATTAATT 59.415 40.000 0.00 0.00 0.00 1.40
2459 4042 5.104900 AGTCCTTCGCTGTCCAGTTATTAAT 60.105 40.000 0.00 0.00 0.00 1.40
2460 4043 4.222145 AGTCCTTCGCTGTCCAGTTATTAA 59.778 41.667 0.00 0.00 0.00 1.40
2461 4044 3.767673 AGTCCTTCGCTGTCCAGTTATTA 59.232 43.478 0.00 0.00 0.00 0.98
2462 4045 2.567615 AGTCCTTCGCTGTCCAGTTATT 59.432 45.455 0.00 0.00 0.00 1.40
2463 4046 2.180276 AGTCCTTCGCTGTCCAGTTAT 58.820 47.619 0.00 0.00 0.00 1.89
2464 4047 1.629043 AGTCCTTCGCTGTCCAGTTA 58.371 50.000 0.00 0.00 0.00 2.24
2465 4048 1.629043 TAGTCCTTCGCTGTCCAGTT 58.371 50.000 0.00 0.00 0.00 3.16
2466 4049 1.478510 CATAGTCCTTCGCTGTCCAGT 59.521 52.381 0.00 0.00 0.00 4.00
2467 4050 1.202463 CCATAGTCCTTCGCTGTCCAG 60.202 57.143 0.00 0.00 0.00 3.86
2468 4051 0.824109 CCATAGTCCTTCGCTGTCCA 59.176 55.000 0.00 0.00 0.00 4.02
2469 4052 1.112113 TCCATAGTCCTTCGCTGTCC 58.888 55.000 0.00 0.00 0.00 4.02
2470 4053 2.748605 CATCCATAGTCCTTCGCTGTC 58.251 52.381 0.00 0.00 0.00 3.51
2471 4054 1.202580 GCATCCATAGTCCTTCGCTGT 60.203 52.381 0.00 0.00 0.00 4.40
2472 4055 1.506493 GCATCCATAGTCCTTCGCTG 58.494 55.000 0.00 0.00 0.00 5.18
2473 4056 0.394565 GGCATCCATAGTCCTTCGCT 59.605 55.000 0.00 0.00 0.00 4.93
2474 4057 0.394565 AGGCATCCATAGTCCTTCGC 59.605 55.000 0.00 0.00 0.00 4.70
2475 4058 1.414181 ACAGGCATCCATAGTCCTTCG 59.586 52.381 0.00 0.00 0.00 3.79
2476 4059 2.224402 GGACAGGCATCCATAGTCCTTC 60.224 54.545 0.00 0.00 44.10 3.46
2477 4060 1.771255 GGACAGGCATCCATAGTCCTT 59.229 52.381 0.00 0.00 44.10 3.36
2478 4061 1.428869 GGACAGGCATCCATAGTCCT 58.571 55.000 0.00 0.00 44.10 3.85
2479 4062 0.398318 GGGACAGGCATCCATAGTCC 59.602 60.000 9.72 0.00 46.16 3.85
2480 4063 1.428869 AGGGACAGGCATCCATAGTC 58.571 55.000 9.72 0.00 40.96 2.59
2481 4064 1.492176 CAAGGGACAGGCATCCATAGT 59.508 52.381 9.72 0.00 40.96 2.12
2482 4065 1.770658 TCAAGGGACAGGCATCCATAG 59.229 52.381 9.72 0.00 40.96 2.23
2483 4066 1.490490 GTCAAGGGACAGGCATCCATA 59.510 52.381 9.72 0.00 43.73 2.74
2484 4067 0.257039 GTCAAGGGACAGGCATCCAT 59.743 55.000 9.72 0.00 43.73 3.41
2485 4068 0.842030 AGTCAAGGGACAGGCATCCA 60.842 55.000 9.72 0.00 46.80 3.41
2486 4069 0.329596 AAGTCAAGGGACAGGCATCC 59.670 55.000 0.00 0.00 46.80 3.51
2487 4070 3.965888 AAGTCAAGGGACAGGCATC 57.034 52.632 0.00 0.00 46.80 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.