>input_sequence_77977
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---------------------------ATGAGGCTCGCTGCAACTTCCAGTGTTCTTGTCACCCTCTTCTTCATTGCTCT
CTTCCTTGGCTCATGCGAGGCTCGACGCCTTCTTGTCCATGGCGCCACGGGCAGTTCAAGCGAGTCACCTCCTGCGCCGC
GCAAGGTACGTTGGTAGCTTTACCTAGCCATGCATTGAAGCAACTTAATTTCCTTGTATCTAAAAGAGTGTCTTTATCGA
TCTCATTGGTTGTTCTACTTGAGTTGTACTAACTCACAGTCCTTAAACTTGAAGGCTGATGGTTCTCCGATAAACCAGCC
GAACGATCTATCAACTGCGGACGCTAAGGATGCTTGCGTTGATCATTTCGACGCCAAGGTGAAGGAGGGAGTGGCGGTAC
CATCAGGCGCAGCTCGGATGGCGGTTATCGGTAGGGTTTCACGGCGGCTTTCTCATAGGAATTTGCAAGTGGTGGGCACA
GCGTTTCATCTAGATTATGCTGGGCCTGAGACCCATCCCCCCACTCACAACTGA--------------------------
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>chr2A_1_TraesCS2A01G411400
CTATTCGAAACAAGATACTTCACACAACTTGACTGATAGTCCAAGAGTAACTT---------------------------
--------------------------------------------------------------TGAAGATTGTGTTAATAT
CTACTTAAGCAAATTTGCATTACTTTTTTTTTGC--GGGGAGCAAGTTTGCATTACTGCCTTTTCTTTGTTCATATATAG
AAAATTCTCTTTTGTTTCGTCTAAACAACACAACATACAATAAACTTGAAATTGCATATCAGCAACATATTTGCATCACT
GCCTTTTCTTCGTTCTCTTTATGTATTGCTTTTATAGCTTGCAAAGACACTAGTTGCGTTAATGAAATTGGAGAGACAAC
TCTCTTTTTAAAAAGAAAAAAAAC--ACATTTGTACTACAATATGTTGATTTGTTTTTTGTGCACCATAAATACTTAACA
GA---GCTTATTCTATGAAGCGAAGATAGTAAGCTAGCACTGATCTCAACAAAACT--AAAAGCCGGATGGAGGGTGCAT
ATGCATGGGTGTTCAGATAAATCCCCTATCAAGTCGAGATTATACTAGGTAGTAGTTGTACGGGTTCATCA----GTTCA
GTTTCCAATTGAACACGCTCACAACTAGTGCTCCTAC-TCAAGTATACTCATTTCGAAAAGTGAGAAAACTTTCTAGCTC
TCATT-AACAGCCAGGTGTGAAGGAACTTTTGCTCGACCAAGGTGGTCTTTAGGGCGCTAATCCCAGCATTAGTAATGCG
TAATCACAGCCTGTTGATTGT----TGGAACACGAACTACGGTGCATGTTCTCACCATTGATGACAGTACAAAAGAAAGA
AGACGAGTAGCACATCATCGTTAGCTGTGTCGTAGAACTTTTGGGAGACAACATCCTCACCAACAACTTTATAGTAACCG
GGCGCTGCACCCCCATGCATT-GTT--------------------------------------CCTTCCCCCATTGTACT
ACACGACCCTCTAGCTAGATCTCCGGCCTCTTCTCTTCTATTTCTTCTCGTCGTCACACCTACTGGTGCATATTGCAATG
CCGGGGTTAAGCTCTCCTCTGGCCCCCATGAGGCTCGCTGCAACTTCCAGTGTTCTTGTCACCCTCTTCTTCATTGCTCT
CTTCCTTGGCTCATGCGAGGCTCGACGCCTTCTTGTCCATGGCGCCACGGGCAGTTCAAGCGAGTCACCTCCTGCGCCGC
GCAAGGTACGTTGGTAGCTTTACCTAGCCATGCATTGAAGCAACTTAATTTCCTTGTATCTAAAAGAGTGTCTTTATCGA
TCTCATTGGTTGTTCTACTTGAGTTGTACTAACTCACAGTCCTTAAACTTGAAGGCTGATGGTTCTCCGATAAACCAGCC
GAACGATCTATCAACTGCGGACGCTAAGGATGCTTGCGTTGATCATTTCGACGCCAAGGTGAAGGAGGGAGTGGCGGTAC
CATCAGGCGCAGCTCGGATGGCGGTTATCGGTAGGGTTTCACGGCGGCTTTCTCATAGGAATTTGCAAGTGGTGGGCACA
GCGTTTCATCTAGATTATGCTGGGCCTGAGACCCATCCCCCCACTCACAACTGATGCATGAGTTTGGGATGTTTGCTCTC
TATGTATATGAGTACGTAGTGTTCGATCGAGCCCTATTTCTGTGTCTGCAACCGATCTTTCTAGCTTCAGCCTACTCGGC
TA------------------------------------------------------------------------------
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------------------------------------------CTGCCGGAGTGAGTACACTAGCAAGCTAGCTAG-----
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------------------------------------------------------------------------------AA
TATTTTCTTGTTGAAAGAGTGTAACAGATCACACAGTATACATATGCTTTGTTGTGTTGAGAGTTCTGGCTAATATAGTT
TTTCTGTGCA--CCCTGCCACCATTATTCCCTATCTCTGGCAGTCAACTTCGC-----CGTTACCTCCTAACAACAGCTC
ACCGCGTCTTCCCCTGCCATGTCACCCGCTCACACTCTCTAGTCTGTACTCAACATGCGCCCGCTGCTGTCAA--TAGCA
CTGCCAACCCGCGCCACCCTACTTGAACTGCCACCACTGTTGGCCGTCACCGCCCCTAGCAATCTCTCTAGCTAGGATTG
AGAGAGCATTGGTGAACCTTCCAAACCTAGCCCTAATT--TGACTATTTTGTCACCT--CATCGTGCTC-CGAGTACTCC
ATCTTCACGGCCGGGGGAAAAACAGTAGGGAGGAGCAACGAGAAGAAGGCAGTT-AACAGTGAGGTGGCGATAGGGACGA
AGATAAAAATTGTAC---------------AAAAAAATCGCCTATCAGAAA--TGAATTTTTGATCCATTATAAATTAGC
ATATGTGTATAGTAACATCATGATCACTGACAACTCGCTCCATTCTCAATTGTAATGCGTGTGCCTAAGAATCTCCTAAA
ACAAAACGAAAAGGGCGTATAATACATTGGGAATGGAGAAGTACTGCTACTTATAGATATAGGACAGGAAAAATATCTCA
AACATCAGGCAAACGAAGAAAAAGGTAAAACACTCCATTTTGGAAAAAAAAAAGCAAAGAAAGAAAAAACACCAACAAGT
TTCACATGCATGACTTATTATTTGAAATGGAGTGAGTTAAAATTAATAACTGGACAGCGAAGGACTATGGATGCCTGTCC
CTTGACTTA
>chr2B_1
CTATGCGAAATAAGATACTTCACACAACTTGACTGATAGTCCAAGAGTAACTT---------------------------
--------------------------------------------------------------TGAAGATTGTGTTAATAT
CTACTTAAGAAAATTAGCATTACCCTTTTTTTTTGTGGGGAGCAAATTTGCATCACTGACTTTTCTTTGTTCATA-ATAG
AAAATTATATTTTGTTTCTTCTAAACAACACAATATACAATAAACTTGAAATTGCATATCAGCAACATATTTGCATCACT
ACCTTTTCTTCGTCCACTTTATG--TTGCTTTCGTAGCTTGCA--GACACTAGTTTTGTTAACGAAACTGGAGAGACCAC
TCTCTTTT--------AAAAAAAC--ACATTTGTACTACAATATGTTGATTTGTTTTTGGTGCACCATAAAT--------
-ACTTGCTTATTCTGTG-------------AAGCTAGCACTGATCTCAACACAAACTAAACAGCCGGATGGAGGGTGCAC
ATTCATGGTTGTTCAGAAAAATCCCCTATCAACTTCAGATCAGTATA---AGTAGTTGTACTGGTCCAGCA----GTTCA
GCTTCCAATGGGACATGCTTACAACTGGTGCTCCTACTTCAAG--TACTCATGTCGGACAGTTAGGAAACTTTCTAGCTC
TC-TTGAACAGCCAGGTGTGAAGGAACTTTTGCTCAACCAGGGTGGTCTTTATGGCGCTAATCCCAGCATTAGTAATGCG
TAATCACAGCCTGTCGATTGTTGGATGGAACACGAACTACGATGCGTGTTCTCGCCATTGCG--CAGTATAATGAAAAGA
AGACGAGCAGCACATCATCGTTAGCTGTGTCGTAGAACTTTTGGGAGACAAAATCCTCACCAACAACTTTATAGTAACCG
GGGGCTGCACCCCCATGCATT-GTTGCACTTGTATATATTCCCAACGGCAGCCTCCGTGTGTCCCTTCCCCCATTGTACT
ACACGACCCTCTAG----ATCTCCGGCCTCTTCTCTTCTATTTCTTCTCGTCGTCACAGCTACTGGTGCA--TTGCAATG
CCGGGGTTAAGCTCTCCTCTGCCCCCCATGAGGCTCGCTGCCACTTCCAGTGTTCTAGTCACCCTCTTCTTCCTTGCTCT
CTTCCTTGGCTCATGCGAGGCTCGACGCCTTTTAGTCCATGGCGCCACGGCCAGTTCAAGCGAGCCACCTCCTGCGCCGC
GCAAGGTATGTTGGTACCTTTACCTAGCCATGCATTGAAGCAACTTAATTTCCTTTTATCTAT---AACATCTTTATCGA
TCTTATTGGTTGTTCTA----AGTTGTACTAACTCACAGTCCTTAAACTTGTAGGCTGATGGTTCTCGGGCAAACCAGCC
GAACGATCTATCAACTGCGGACGCTAAGGATGCTTGTGTTGATCATTTCGACGCCAAGGTGAAGGCAGGAGTGGCGGCAC
CATCAGGTGCAGTACGGACCGCGGTTATCGGTAGGGTTTCGCGGCGGCTTTCTCATAGGAATTTGCAAGTGGTGGGCACA
GCGTTTCATCTAGATTATGCTGGGCCTGAGACCCATACCCCCACTCATAACTGATGCGTGAGTTTGTGATGTTTGCTCTC
TATGTATACG-------AGTGTTCGATCGAGCCCTATTTCTGTGTCTGCAACC-ATCTTTCTAGCTTCAGCCTACTCGGC
TAGAGTAAATTGCTGAAAGCCACCACATTTGTGGCGAGGGTACTGCAAAACTACCGTTTTTGCCAAAAATCACGAAAAAC
CACCACTTTTGTGGCAAGTGAATAACAAATGCCACTGATTCAAAATTGAGCGGCGTTAATAGAAAAACTGACAGATGGGA
CCCACATATCTAGGCTGATGTGGTGAAGACTAGTCCTAGTCAATGTTTGACCTGCTGAGGTGGACAGGGACCCACTTGTC
TGCCACACCTCTTATCTCCCCCTCTCTCTCGTCCTTCCTACCCAGTCCGCTCCGACGAGGCCGAGCCCCTGTGCGCCCGC
CCCCTGCCTGCTCCGGGGAGGTCGAGCTGCCGCACGCCCGCCCCCATGCCTGCTCCGGCGCCCCCTGCCTGCTCCTCGTC
TCACATGCGCGGCCGCCCCCTACCTTCTCCTCGCCGCGCGCCCGCCTACCTACCTGCTCCGGCAAGGCCGAGCTAGCGTG
CGCCCCCGCCCCCGCCCGCTCTGACATGAACGAGCTGCCGTGCGCGCACCTAGCACAGGGGATCGAGAGGCCACTGGTGA
ATCGGCGGCGCCGGTGATGCAGGGGCCCGACGACGGTGGGTTTGAGGCCAGTCGGCGGCGGCAGATGCGGTCGTGGCCAG
CCGCGAGACGCCAGCAAGCGGCTCGGGCGGAGCGTCTCTTCACCGCCAGATGCTCCCGTCACGGCTAGCCACTGGTGAAT
CGGCGACGACGGCGATACATGGGCCTTGGGACGGCGGGGTTCGAGTCCAATCGACGGCGGCGATGCAGGGGTCTTCCGGC
GGTGGTTGGAGCCTGTTTTGGACGGGAAACAACAGCGGAGGGCAGATCTGGAGGCGGGAGGCCGATTCCGGTCTGTCCGG
AGTCCGGCAGTGCGCCGGCGGCGGCGGCGGTGAAGCTCCATTACGGGACAGAGAGAGGGAACGTCGAGATAGAGAAGAAC
CAGAGAGAAAAATTAGAGAGAGAAAAAAGAGCTGAGGGGCTGACATGTGGGACTCCTGCCACCTCAGCATATTTGTCTAC
ATAGATATGCCACGTCTGCCTGCCATATGGGTCCAATCTGTCAGTTTTGTGTTTAGTTGCGGTTCAGTTTTGAATCAGTG
GCATCTGTTATTCACTTGCCACAAAAGTGGTGGTGGTTTTTCGTGATTTTTGGCAAAAACGGTAGTTTTGCAGTACCCTC
GCCACAAATGTGGTGGCTTTCAGCAATTTACTCACTCGGCTACTGCCGGAGTGAGTACACCAGCAAGCTAGCTAGTTCCT
CCGTTCCTAAATATATAAGTCTTTGTAGAGATTTCACTAGATGAACTACGTACAGAGCAAAATGAATGAACCTAAACTTA
AAATGCATCTATATACATCCGTATGCAGTTTATAGTGAAATCTCTACAAAGACTTACATTTAGGAACGGAGGGAGTAGAA
TATTTTCTTGTTGAAAGAATGTAACAGATCACACAGTATACATATGCTTTGTTGTGTTGAGAGTTGTGGCTAATATAGTT
TTTCTCACCCTGCCATGCCACCGTTCTTCCCTATCTCTGGCAGTCAACGTCACCAACTCGTTACCTCCTAACAACAGCTC
ACCGCGTCTTCCCTTGCCATGTCAACCGCTCAGACTCTCTACTCTGTACTCAGCATGCGCGCCCTGCCGTCAA--TAGCA
CTGCCAACCCGCGCCACCCTACTTGAACTGCCACCACTATTGGCCGTCACCACCCCTAGCGATCTCTCTAGCTAGGATTG
AGAGAGCATTGGCGAACCTTCCAAACCTAGCCCTAATT--TGACTATTTTGTCGCCTGTCATCGTGCTCTTGAGTACTCC
ATCTTCACGGTCGGGGGAAAAACAGTAGGGAGGATCAACGAGAAGAAGGCAGTTGAACAGTGAGGTGGCGATAGGGACGA
AGATAAAAATTGTACG---------------AAAAAATCGCCTATAAGAAA--TGAATTTTTGATCGATTATAAATTAGT
TTATGTGTACAGTAACATCATGATCACTGACAACTCGCTCCATTCTGAATTGTAATGCGTGTGCCTAGGAATCTCCTAAA
AAAAAA--------------------------------------------------------------------------
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>chr2D_8
AAACAG-------GATACTTCACACAACTTGACTGATAGTCCAAGAGTAACTTTGATGATTGTGTTAATAACTACTTAAG
TAAATTTGCATTACTTTTTTATAGATATTAACACAACTTGACTGATAGTCCAAGAGTAGCTTTGATGATTGTGTTAATAT
CTACTTAAGCAAATTTGCATTACTTT-TTTTTGC--GGGGAGCAAGTTTGCATTACTGCCTTTTCTTTGTTCATATATAG
AAAGTTCTCTTTTGTTTCTTCTAAACAACACAACATACAATAAACTTGAAATTGCATATCAGCAACATATTTGCATCACT
GCCTTTTCTTCATTCTCTTTATGTATTGCTTTTGTAACTTGCAAAGACACTAGTTTCGTTAATGGAATTGGAGAGACAAC
TCTCTTTTTGAAAAGAAAAAAAAATTACATTTGTACTACAATATGTTGATTTGTATTTTGTGCACCATAAAT--------
-A---GCTTATTCTATGAAGCGGAGATAGTAAGCTAGCACTGATCTCAACACAAACTAAACAGC----------------
---------------------------------------------------GTAGTTGTACTGGTTCAGCATGCAGTTCA
GCTTCCAATGGGACATGCTTACAACTAGCGCTCCTAC-TCAAG--TACTCATGTCGGAAAGTGAGGAAACTTTCTAGCTC
TCATTAAACAGCCAGATGTGAAGGAACTTTTGCTCAACCAGTCTC-----TAGGGCGCTGATCCCAGCATTAGTAATGTG
TAATCACAGCGG------------------------------TGCGTGTTCTCACCATTGCTGACAGTACAAAAGAAAGA
AGACGAAGAGTAGCACATCGTTAGCTGTGTCATACAACTTTTGGGAGACAAAATCC------------TTATAGTAACCG
GGGGCTCCACCCCCATGCATTTGTTGCACTTGTATATA---------------------------TTCCCCCATTGTACT
ACACGACCCTCTAGCTAGATCTCCGGCCTCTTCTCTTTTATTTCTTCTCGTCGTCACACCTACTGGTGCA--TTACAATG
CCGGTGTTAAGCTCTCCTCTGGCCCCCATGAGGCTCG---------------------TCACCTTCTTCTTCCTTGCTCT
CTTCCTTGGCTCATGCGAGGCTCGACGCCTTCTTGTTCATGGCTCCACGGCCAGTTCAAGCGAGCCACCTCCTGCGCCGC
GCAAGGTACGTTGGTAGCTTTACCTAGCCATGCATTTAAGCAACTTAATTTCCTTCTATCTAT---AGCGTCTTTATCGA
TCTTATTGGTTGTT-TA----AGTTGTACTAACTCACAGTCCTTAAACTTGTAGGCTGATGGTTCCCCGACAAACCAGCC
AAATGATCTATCAACTGCGGACGCTAAGGATGCTTGTGTTGATCATTTCGACGCCAAGGTGAAGTCAGGAGTGGCGGCAT
CATCAGGTTCAGCTCGGACCGCGGTTGTCGGTAGGGTTTCGAGGCGGCTTTCTCATAGGGATTTGCAAGTGGTGGGCACA
GCGTTTCATCTAGATTATGCTGGGCCTGAAACCCATCTCCCCACTCACAATTGATGCATGAGTATGTGATGTTTGTTCGC
TATGTATATG-------AGTGTTTGATCGATCCCTATCTCTGGAGCAGGGTCA---------------------------
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-------------------------------------------------GGTCTCCTGCCTGCTTGGCATGTCCTTCTGT
GTCTCCTG------------------------------------------------------------------------
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-----------------------------------------------------------------AGCTAGCTCG-----
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------------------------------------------------------------------------------AA
TACTTTCTTGTTGAAAGAATGAAACAGATCACACAGTATACATATGATTTGTTGTGTTGAGAGTTCTGGCTAATATAGTT
TTTCTGTGCA--CCCTGCCACCATTCTTCCCTATCTCTGCCAGTCAATTTAC-----------------AACAACAGCTC
ACCGCGTCTTCTCTTGCCATGTCAACCACTCACACTCTCTAGTCTGTACTCAACAGCTCACCGCGCCCCCTGCGGTAGCA
CTGCCGACCCGCACCACCCTACTTGAATTGCCACCACTGTTGGCCATCACCACCCCTAGCAATCTCTCTAGCTAGGACTG
AGAGAGCATTGGTGAACCATCCAAACCTAGCCCTAATTTTTGACTATTTCGTCGCCTGTCATCGTGCTCTCGAGTACTCG
ATCTTC------------AAAACAGTAGGGAGGGGCAACGAGAAGAAAGCAGTTGTGCAGTGAGGTGGCGATAGGGACGA
AGATAAACCGAAGCAAACCTCAAAATGGTAAAAAAAAACGCCTTTAAGAAAAATGAATTTTTGATCGATTATAAATTAGC
ATATGTGTATAGTACTATTATGATCACTGACAACTCGCTCCATTCTGAATTGTAATTCGTGTGCCTAAGGATCTCCTAAA
ACAAAACAAAA---------------------------------------------------------------------
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>SNPs
----S-----S---------------------------------------------------------------------
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------------------S-------------------------------------------------------------
---------------------------------S---------------------S------------------------
---------S--------------------------------------------------------------SSSSSSSS
S---------------------S----------------------------S--SS----S------------------S
--S-----S--------S--------------S-SS----S-SSS--SSS-----------S------S-----------
-S-------S-S---S---S-----------------------SS-------S---S--------S--------------
-----------------------------------S----S---------------------------------------
--------------S--------------------------S---S--------------S-------------------
-------S-------------------------------------------S----------------------------
--S-----------------------------------------------------------------------------
----------------------------------------------------------------------SS--------
-----------------------------------------S--------------S---------------S-------
--------------------------------------------------S-------------S---------------
-------------------------------------------------------S------SSSS--S-----------
---S-------------SSSS------------------------------S------------------S---------
------------------------------------S----------------------------SS----------S--
-------S----------SS--------------------S---------------------------------------
------------------------------------------------------------------S-------------
----------SSSSSSS------------------------------------S--------------------------
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------------------------------------------------------------S-------------------
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------------------S-------------------------------------------------------------
-------------------------S-------------------------S----------------------------
-------------S----------S------------------------------------------S------------
---------------------------------------------------S----------------------------
-----------------------------------------------------S--------------------------
----------S---------------------------------------------------------------------
---------------------------------------------S--------------------S-------------
----------------------------------------------S---------------------------------
-------S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSS
>forward_563
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---------------------------------------------------------------CCGGATGGAGGGTGCAT
ATG-----------------------------------------------------------------------------
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>reverse_1694
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-------------ACGTAGTGTTCGATCGAGCC-----------------------------------------------
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