Multiple sequence alignment - TraesCS2A01G404100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G404100 chr2A 100.000 3410 0 0 1 3410 659652525 659649116 0.000000e+00 6298.0
1 TraesCS2A01G404100 chr2D 94.102 1916 71 18 751 2649 515829362 515827472 0.000000e+00 2874.0
2 TraesCS2A01G404100 chr2D 91.494 482 28 4 2941 3410 515827086 515826606 0.000000e+00 651.0
3 TraesCS2A01G404100 chr2D 86.141 368 35 7 1 360 515830860 515830501 1.920000e-102 383.0
4 TraesCS2A01G404100 chr2D 86.957 276 22 4 2641 2909 515827443 515827175 7.150000e-77 298.0
5 TraesCS2A01G404100 chr2D 100.000 30 0 0 417 446 515829832 515829803 4.750000e-04 56.5
6 TraesCS2A01G404100 chr2B 92.268 1927 82 20 755 2649 607248306 607246415 0.000000e+00 2671.0
7 TraesCS2A01G404100 chr2B 94.190 327 12 3 3088 3410 607245709 607245386 3.060000e-135 492.0
8 TraesCS2A01G404100 chr2B 87.772 368 36 2 1 360 607319487 607319121 4.070000e-114 422.0
9 TraesCS2A01G404100 chr2B 84.868 304 24 14 2809 3096 607246144 607245847 1.550000e-73 287.0
10 TraesCS2A01G404100 chr6A 80.620 258 40 5 454 702 466481431 466481687 1.250000e-44 191.0
11 TraesCS2A01G404100 chr5A 78.472 288 46 11 450 725 458978769 458979052 1.260000e-39 174.0
12 TraesCS2A01G404100 chr7D 78.967 271 40 15 456 715 116789370 116789634 5.850000e-38 169.0
13 TraesCS2A01G404100 chr3A 81.193 218 32 8 454 664 638465550 638465335 2.100000e-37 167.0
14 TraesCS2A01G404100 chr4D 78.598 271 41 15 456 715 35687118 35687382 2.720000e-36 163.0
15 TraesCS2A01G404100 chr7B 77.455 275 51 10 447 713 97925548 97925819 1.640000e-33 154.0
16 TraesCS2A01G404100 chr1D 77.061 279 52 10 457 725 476225701 476225425 2.120000e-32 150.0
17 TraesCS2A01G404100 chr6B 76.277 274 53 11 453 715 697660103 697659831 5.940000e-28 135.0
18 TraesCS2A01G404100 chr3D 78.505 214 37 8 500 705 288101461 288101249 7.680000e-27 132.0
19 TraesCS2A01G404100 chr4B 79.558 181 35 2 534 713 586585874 586585695 9.930000e-26 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G404100 chr2A 659649116 659652525 3409 True 6298.0 6298 100.0000 1 3410 1 chr2A.!!$R1 3409
1 TraesCS2A01G404100 chr2D 515826606 515830860 4254 True 852.5 2874 91.7388 1 3410 5 chr2D.!!$R1 3409
2 TraesCS2A01G404100 chr2B 607245386 607248306 2920 True 1150.0 2671 90.4420 755 3410 3 chr2B.!!$R2 2655


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
529 1540 0.036765 TCCTATGAACGCACACACCC 60.037 55.0 0.0 0.0 0.0 4.61 F
532 1543 0.106894 TATGAACGCACACACCCACA 59.893 50.0 0.0 0.0 0.0 4.17 F
564 1575 0.179004 ATCCGAGAGACTGAGCCGAT 60.179 55.0 0.0 0.0 0.0 4.18 F
603 1614 0.243095 AGAAGTCACCGTAACGCCTC 59.757 55.0 0.0 0.0 0.0 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1874 2915 1.174078 TGTAACGGAGACTGACGGCA 61.174 55.000 0.00 0.0 0.00 5.69 R
2238 3281 1.279271 GTCTTGGCCTTCTTGGAGCTA 59.721 52.381 3.32 0.0 38.35 3.32 R
2391 3441 2.599408 TTTACTCCTCGTCCTCCTGT 57.401 50.000 0.00 0.0 0.00 4.00 R
2432 3482 3.566273 CAAACGCTGATTTGCACCA 57.434 47.368 0.00 0.0 33.07 4.17 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 0.178891 TTGAGCTCCTCAACCCCTCT 60.179 55.000 12.15 0.00 44.27 3.69
27 28 1.691434 CTCCTCAACCCCTCTAGCATC 59.309 57.143 0.00 0.00 0.00 3.91
28 29 1.008327 TCCTCAACCCCTCTAGCATCA 59.992 52.381 0.00 0.00 0.00 3.07
30 31 2.392662 CTCAACCCCTCTAGCATCAGA 58.607 52.381 0.00 0.00 0.00 3.27
34 35 0.968405 CCCCTCTAGCATCAGAGCTC 59.032 60.000 5.27 5.27 45.26 4.09
42 43 2.172372 CATCAGAGCTCACGCCTGC 61.172 63.158 17.77 0.00 35.63 4.85
61 62 2.575461 GTAAGACCCACCGACCGG 59.425 66.667 6.94 6.94 42.03 5.28
69 70 3.803082 CACCGACCGGCATTGCTG 61.803 66.667 10.65 10.65 39.32 4.41
79 80 3.539253 GCATTGCTGCTAACCATCG 57.461 52.632 0.16 0.00 45.32 3.84
81 82 1.268234 GCATTGCTGCTAACCATCGTC 60.268 52.381 0.16 0.00 45.32 4.20
124 125 1.180029 GATGCCATGCCAACTCACTT 58.820 50.000 0.00 0.00 0.00 3.16
125 126 1.547372 GATGCCATGCCAACTCACTTT 59.453 47.619 0.00 0.00 0.00 2.66
128 129 2.754552 TGCCATGCCAACTCACTTTATC 59.245 45.455 0.00 0.00 0.00 1.75
145 146 0.669077 ATCGCCATGTCCTAGTCGTC 59.331 55.000 0.00 0.00 0.00 4.20
159 160 1.069378 GTCGTCGTCGTTGATGGTCC 61.069 60.000 1.33 0.00 38.33 4.46
186 187 1.918800 CTCCCCCAACGTTCCCTCT 60.919 63.158 0.00 0.00 0.00 3.69
194 195 2.614734 CCAACGTTCCCTCTAAACTCCC 60.615 54.545 0.00 0.00 0.00 4.30
199 200 2.767394 GTTCCCTCTAAACTCCCTCCTC 59.233 54.545 0.00 0.00 0.00 3.71
201 202 1.008449 CCCTCTAAACTCCCTCCTCCA 59.992 57.143 0.00 0.00 0.00 3.86
227 236 4.654724 AGCATCCCTAACCCTAACTTAGTC 59.345 45.833 0.00 0.00 0.00 2.59
235 244 5.803237 AACCCTAACTTAGTCATATCCGG 57.197 43.478 0.00 0.00 0.00 5.14
242 251 6.479972 AACTTAGTCATATCCGGTTCATCA 57.520 37.500 0.00 0.00 0.00 3.07
256 265 2.607750 ATCACCGGTGCCTCCACT 60.608 61.111 30.25 4.96 41.75 4.00
259 268 4.954118 ACCGGTGCCTCCACTCCA 62.954 66.667 6.12 0.00 41.75 3.86
261 270 4.394712 CGGTGCCTCCACTCCACC 62.395 72.222 0.00 0.00 44.28 4.61
262 271 2.930562 GGTGCCTCCACTCCACCT 60.931 66.667 1.99 0.00 44.32 4.00
263 272 2.665603 GTGCCTCCACTCCACCTC 59.334 66.667 0.00 0.00 38.93 3.85
264 273 2.997315 TGCCTCCACTCCACCTCG 60.997 66.667 0.00 0.00 0.00 4.63
265 274 4.459089 GCCTCCACTCCACCTCGC 62.459 72.222 0.00 0.00 0.00 5.03
267 276 2.716017 CCTCCACTCCACCTCGCTC 61.716 68.421 0.00 0.00 0.00 5.03
268 277 3.057547 CTCCACTCCACCTCGCTCG 62.058 68.421 0.00 0.00 0.00 5.03
269 278 4.803426 CCACTCCACCTCGCTCGC 62.803 72.222 0.00 0.00 0.00 5.03
356 365 1.758592 GGTACCCACAGCCAGTCAA 59.241 57.895 0.00 0.00 0.00 3.18
360 369 2.086610 ACCCACAGCCAGTCAATTTT 57.913 45.000 0.00 0.00 0.00 1.82
361 370 2.397597 ACCCACAGCCAGTCAATTTTT 58.602 42.857 0.00 0.00 0.00 1.94
405 414 0.879400 CAAGATAGCCAGCCAGCTCG 60.879 60.000 0.57 0.00 43.67 5.03
446 1084 3.541713 GGGCTGCTCCTACTCGGG 61.542 72.222 0.00 0.00 34.39 5.14
452 1463 1.275291 CTGCTCCTACTCGGGACAAAA 59.725 52.381 0.00 0.00 0.00 2.44
453 1464 1.906574 TGCTCCTACTCGGGACAAAAT 59.093 47.619 0.00 0.00 0.00 1.82
457 1468 4.833390 CTCCTACTCGGGACAAAATCTTT 58.167 43.478 0.00 0.00 0.00 2.52
459 1470 5.627135 TCCTACTCGGGACAAAATCTTTTT 58.373 37.500 0.00 0.00 0.00 1.94
483 1494 4.933330 TGAAGATCAGTACGGATACAAGC 58.067 43.478 8.57 0.00 33.30 4.01
484 1495 3.627732 AGATCAGTACGGATACAAGCG 57.372 47.619 8.57 0.00 33.30 4.68
485 1496 2.052157 GATCAGTACGGATACAAGCGC 58.948 52.381 8.57 0.00 33.30 5.92
487 1498 1.065102 TCAGTACGGATACAAGCGCTC 59.935 52.381 12.06 0.00 33.30 5.03
488 1499 1.100510 AGTACGGATACAAGCGCTCA 58.899 50.000 12.06 0.00 33.30 4.26
489 1500 1.681793 AGTACGGATACAAGCGCTCAT 59.318 47.619 12.06 4.31 33.30 2.90
490 1501 2.882761 AGTACGGATACAAGCGCTCATA 59.117 45.455 12.06 6.73 33.30 2.15
492 1503 4.698780 AGTACGGATACAAGCGCTCATATA 59.301 41.667 12.06 0.81 33.30 0.86
494 1505 5.830000 ACGGATACAAGCGCTCATATATA 57.170 39.130 12.06 0.00 0.00 0.86
495 1506 6.392625 ACGGATACAAGCGCTCATATATAT 57.607 37.500 12.06 2.49 0.00 0.86
496 1507 6.209361 ACGGATACAAGCGCTCATATATATG 58.791 40.000 12.06 15.47 35.04 1.78
497 1508 5.117745 CGGATACAAGCGCTCATATATATGC 59.882 44.000 12.06 7.12 33.76 3.14
513 1524 2.435586 GCGCATGCACTCACTCCT 60.436 61.111 19.57 0.00 42.15 3.69
514 1525 1.153568 GCGCATGCACTCACTCCTA 60.154 57.895 19.57 0.00 42.15 2.94
515 1526 0.531532 GCGCATGCACTCACTCCTAT 60.532 55.000 19.57 0.00 42.15 2.57
516 1527 1.215244 CGCATGCACTCACTCCTATG 58.785 55.000 19.57 0.00 0.00 2.23
517 1528 1.202452 CGCATGCACTCACTCCTATGA 60.202 52.381 19.57 0.00 0.00 2.15
518 1529 2.739609 CGCATGCACTCACTCCTATGAA 60.740 50.000 19.57 0.00 0.00 2.57
519 1530 2.611292 GCATGCACTCACTCCTATGAAC 59.389 50.000 14.21 0.00 0.00 3.18
520 1531 2.654749 TGCACTCACTCCTATGAACG 57.345 50.000 0.00 0.00 0.00 3.95
521 1532 1.281899 GCACTCACTCCTATGAACGC 58.718 55.000 0.00 0.00 0.00 4.84
522 1533 1.404181 GCACTCACTCCTATGAACGCA 60.404 52.381 0.00 0.00 0.00 5.24
523 1534 2.263077 CACTCACTCCTATGAACGCAC 58.737 52.381 0.00 0.00 0.00 5.34
524 1535 1.893137 ACTCACTCCTATGAACGCACA 59.107 47.619 0.00 0.00 0.00 4.57
525 1536 2.263077 CTCACTCCTATGAACGCACAC 58.737 52.381 0.00 0.00 0.00 3.82
526 1537 1.616374 TCACTCCTATGAACGCACACA 59.384 47.619 0.00 0.00 0.00 3.72
527 1538 1.726791 CACTCCTATGAACGCACACAC 59.273 52.381 0.00 0.00 0.00 3.82
528 1539 1.337823 ACTCCTATGAACGCACACACC 60.338 52.381 0.00 0.00 0.00 4.16
529 1540 0.036765 TCCTATGAACGCACACACCC 60.037 55.000 0.00 0.00 0.00 4.61
530 1541 0.321210 CCTATGAACGCACACACCCA 60.321 55.000 0.00 0.00 0.00 4.51
531 1542 0.796312 CTATGAACGCACACACCCAC 59.204 55.000 0.00 0.00 0.00 4.61
532 1543 0.106894 TATGAACGCACACACCCACA 59.893 50.000 0.00 0.00 0.00 4.17
533 1544 1.444119 ATGAACGCACACACCCACAC 61.444 55.000 0.00 0.00 0.00 3.82
534 1545 2.826738 AACGCACACACCCACACC 60.827 61.111 0.00 0.00 0.00 4.16
535 1546 4.868116 ACGCACACACCCACACCC 62.868 66.667 0.00 0.00 0.00 4.61
536 1547 4.562425 CGCACACACCCACACCCT 62.562 66.667 0.00 0.00 0.00 4.34
537 1548 2.833227 GCACACACCCACACCCTA 59.167 61.111 0.00 0.00 0.00 3.53
538 1549 1.378762 GCACACACCCACACCCTAT 59.621 57.895 0.00 0.00 0.00 2.57
539 1550 0.960364 GCACACACCCACACCCTATG 60.960 60.000 0.00 0.00 0.00 2.23
540 1551 0.690192 CACACACCCACACCCTATGA 59.310 55.000 0.00 0.00 0.00 2.15
541 1552 0.984230 ACACACCCACACCCTATGAG 59.016 55.000 0.00 0.00 0.00 2.90
542 1553 0.392998 CACACCCACACCCTATGAGC 60.393 60.000 0.00 0.00 0.00 4.26
543 1554 0.840288 ACACCCACACCCTATGAGCA 60.840 55.000 0.00 0.00 0.00 4.26
544 1555 0.548031 CACCCACACCCTATGAGCAT 59.452 55.000 0.00 0.00 0.00 3.79
545 1556 1.768275 CACCCACACCCTATGAGCATA 59.232 52.381 0.00 0.00 0.00 3.14
546 1557 2.373169 CACCCACACCCTATGAGCATAT 59.627 50.000 0.00 0.00 0.00 1.78
547 1558 2.639839 ACCCACACCCTATGAGCATATC 59.360 50.000 0.00 0.00 0.00 1.63
548 1559 2.026822 CCCACACCCTATGAGCATATCC 60.027 54.545 0.00 0.00 0.00 2.59
549 1560 2.354103 CCACACCCTATGAGCATATCCG 60.354 54.545 0.00 0.00 0.00 4.18
550 1561 2.562738 CACACCCTATGAGCATATCCGA 59.437 50.000 0.00 0.00 0.00 4.55
551 1562 2.828520 ACACCCTATGAGCATATCCGAG 59.171 50.000 0.00 0.00 0.00 4.63
552 1563 3.092301 CACCCTATGAGCATATCCGAGA 58.908 50.000 0.00 0.00 0.00 4.04
553 1564 3.130164 CACCCTATGAGCATATCCGAGAG 59.870 52.174 0.00 0.00 0.00 3.20
554 1565 3.010696 ACCCTATGAGCATATCCGAGAGA 59.989 47.826 0.00 0.00 0.00 3.10
555 1566 3.380004 CCCTATGAGCATATCCGAGAGAC 59.620 52.174 0.00 0.00 0.00 3.36
556 1567 4.269183 CCTATGAGCATATCCGAGAGACT 58.731 47.826 0.00 0.00 0.00 3.24
557 1568 4.096231 CCTATGAGCATATCCGAGAGACTG 59.904 50.000 0.00 0.00 0.00 3.51
558 1569 3.214696 TGAGCATATCCGAGAGACTGA 57.785 47.619 0.00 0.00 0.00 3.41
559 1570 3.145286 TGAGCATATCCGAGAGACTGAG 58.855 50.000 0.00 0.00 0.00 3.35
560 1571 1.885887 AGCATATCCGAGAGACTGAGC 59.114 52.381 0.00 0.00 0.00 4.26
561 1572 1.067915 GCATATCCGAGAGACTGAGCC 60.068 57.143 0.00 0.00 0.00 4.70
562 1573 1.198867 CATATCCGAGAGACTGAGCCG 59.801 57.143 0.00 0.00 0.00 5.52
563 1574 0.468648 TATCCGAGAGACTGAGCCGA 59.531 55.000 0.00 0.00 0.00 5.54
564 1575 0.179004 ATCCGAGAGACTGAGCCGAT 60.179 55.000 0.00 0.00 0.00 4.18
565 1576 0.468648 TCCGAGAGACTGAGCCGATA 59.531 55.000 0.00 0.00 0.00 2.92
566 1577 1.072489 TCCGAGAGACTGAGCCGATAT 59.928 52.381 0.00 0.00 0.00 1.63
567 1578 2.302157 TCCGAGAGACTGAGCCGATATA 59.698 50.000 0.00 0.00 0.00 0.86
568 1579 3.055021 TCCGAGAGACTGAGCCGATATAT 60.055 47.826 0.00 0.00 0.00 0.86
569 1580 3.311322 CCGAGAGACTGAGCCGATATATC 59.689 52.174 2.34 2.34 0.00 1.63
570 1581 3.935828 CGAGAGACTGAGCCGATATATCA 59.064 47.826 13.11 0.00 0.00 2.15
571 1582 4.574421 CGAGAGACTGAGCCGATATATCAT 59.426 45.833 13.11 0.00 0.00 2.45
572 1583 5.277297 CGAGAGACTGAGCCGATATATCATC 60.277 48.000 13.11 7.83 0.00 2.92
573 1584 5.754782 AGAGACTGAGCCGATATATCATCT 58.245 41.667 13.11 8.24 0.00 2.90
574 1585 6.186957 AGAGACTGAGCCGATATATCATCTT 58.813 40.000 13.11 0.00 0.00 2.40
575 1586 6.095300 AGAGACTGAGCCGATATATCATCTTG 59.905 42.308 13.11 8.01 0.00 3.02
576 1587 5.948758 AGACTGAGCCGATATATCATCTTGA 59.051 40.000 13.11 0.47 0.00 3.02
577 1588 6.095300 AGACTGAGCCGATATATCATCTTGAG 59.905 42.308 13.11 10.07 0.00 3.02
578 1589 5.948758 ACTGAGCCGATATATCATCTTGAGA 59.051 40.000 13.11 0.00 0.00 3.27
579 1590 6.606796 ACTGAGCCGATATATCATCTTGAGAT 59.393 38.462 13.11 0.00 32.49 2.75
580 1591 7.123997 ACTGAGCCGATATATCATCTTGAGATT 59.876 37.037 13.11 0.00 30.15 2.40
581 1592 7.845037 TGAGCCGATATATCATCTTGAGATTT 58.155 34.615 13.11 0.00 30.15 2.17
582 1593 8.316946 TGAGCCGATATATCATCTTGAGATTTT 58.683 33.333 13.11 0.00 30.15 1.82
583 1594 9.809096 GAGCCGATATATCATCTTGAGATTTTA 57.191 33.333 13.11 0.00 30.15 1.52
593 1604 8.553459 TCATCTTGAGATTTTAAGAAGTCACC 57.447 34.615 0.00 0.00 36.59 4.02
594 1605 7.331934 TCATCTTGAGATTTTAAGAAGTCACCG 59.668 37.037 0.00 0.00 36.59 4.94
595 1606 6.522054 TCTTGAGATTTTAAGAAGTCACCGT 58.478 36.000 0.00 0.00 30.49 4.83
596 1607 7.663827 TCTTGAGATTTTAAGAAGTCACCGTA 58.336 34.615 0.00 0.00 30.49 4.02
597 1608 8.145767 TCTTGAGATTTTAAGAAGTCACCGTAA 58.854 33.333 0.00 0.00 30.49 3.18
598 1609 7.647907 TGAGATTTTAAGAAGTCACCGTAAC 57.352 36.000 0.00 0.00 0.00 2.50
599 1610 6.364165 TGAGATTTTAAGAAGTCACCGTAACG 59.636 38.462 0.00 0.00 0.00 3.18
600 1611 4.713854 TTTTAAGAAGTCACCGTAACGC 57.286 40.909 0.00 0.00 0.00 4.84
601 1612 2.352503 TAAGAAGTCACCGTAACGCC 57.647 50.000 0.00 0.00 0.00 5.68
602 1613 0.677842 AAGAAGTCACCGTAACGCCT 59.322 50.000 0.00 0.00 0.00 5.52
603 1614 0.243095 AGAAGTCACCGTAACGCCTC 59.757 55.000 0.00 0.00 0.00 4.70
604 1615 1.069378 GAAGTCACCGTAACGCCTCG 61.069 60.000 0.00 0.00 0.00 4.63
605 1616 1.799258 AAGTCACCGTAACGCCTCGT 61.799 55.000 0.00 0.00 43.97 4.18
606 1617 0.955428 AGTCACCGTAACGCCTCGTA 60.955 55.000 0.00 0.00 39.99 3.43
607 1618 0.522076 GTCACCGTAACGCCTCGTAG 60.522 60.000 0.00 0.00 39.99 3.51
608 1619 0.955428 TCACCGTAACGCCTCGTAGT 60.955 55.000 0.00 0.00 39.99 2.73
609 1620 0.522076 CACCGTAACGCCTCGTAGTC 60.522 60.000 0.00 0.00 39.99 2.59
610 1621 1.297158 CCGTAACGCCTCGTAGTCG 60.297 63.158 0.00 0.00 39.99 4.18
611 1622 1.695893 CCGTAACGCCTCGTAGTCGA 61.696 60.000 10.37 0.00 39.99 4.20
612 1623 0.585029 CGTAACGCCTCGTAGTCGAC 60.585 60.000 7.70 7.70 39.99 4.20
624 1635 3.388149 GTAGTCGACGAGAACCTCTTC 57.612 52.381 10.46 0.00 0.00 2.87
625 1636 2.188062 AGTCGACGAGAACCTCTTCT 57.812 50.000 10.46 0.00 39.64 2.85
626 1637 2.506444 AGTCGACGAGAACCTCTTCTT 58.494 47.619 10.46 0.00 36.82 2.52
627 1638 2.885894 AGTCGACGAGAACCTCTTCTTT 59.114 45.455 10.46 0.00 36.82 2.52
628 1639 3.058085 AGTCGACGAGAACCTCTTCTTTC 60.058 47.826 10.46 0.00 36.82 2.62
629 1640 2.882761 TCGACGAGAACCTCTTCTTTCA 59.117 45.455 0.00 0.00 36.82 2.69
630 1641 3.506455 TCGACGAGAACCTCTTCTTTCAT 59.494 43.478 0.00 0.00 36.82 2.57
631 1642 4.022242 TCGACGAGAACCTCTTCTTTCATT 60.022 41.667 0.00 0.00 36.82 2.57
632 1643 4.090642 CGACGAGAACCTCTTCTTTCATTG 59.909 45.833 0.00 0.00 36.82 2.82
633 1644 5.215252 ACGAGAACCTCTTCTTTCATTGA 57.785 39.130 0.00 0.00 36.82 2.57
634 1645 5.611374 ACGAGAACCTCTTCTTTCATTGAA 58.389 37.500 0.00 0.00 36.82 2.69
635 1646 5.467063 ACGAGAACCTCTTCTTTCATTGAAC 59.533 40.000 0.00 0.00 36.82 3.18
636 1647 5.466728 CGAGAACCTCTTCTTTCATTGAACA 59.533 40.000 0.00 0.00 36.82 3.18
637 1648 6.564873 CGAGAACCTCTTCTTTCATTGAACAC 60.565 42.308 0.00 0.00 36.82 3.32
638 1649 5.237344 AGAACCTCTTCTTTCATTGAACACG 59.763 40.000 0.00 0.00 32.29 4.49
639 1650 4.451900 ACCTCTTCTTTCATTGAACACGT 58.548 39.130 0.00 0.00 0.00 4.49
640 1651 5.607477 ACCTCTTCTTTCATTGAACACGTA 58.393 37.500 0.00 0.00 0.00 3.57
641 1652 6.231211 ACCTCTTCTTTCATTGAACACGTAT 58.769 36.000 0.00 0.00 0.00 3.06
642 1653 6.369065 ACCTCTTCTTTCATTGAACACGTATC 59.631 38.462 0.00 0.00 0.00 2.24
643 1654 6.368791 CCTCTTCTTTCATTGAACACGTATCA 59.631 38.462 0.00 0.00 0.00 2.15
644 1655 7.117241 TCTTCTTTCATTGAACACGTATCAC 57.883 36.000 0.00 0.00 0.00 3.06
645 1656 5.856126 TCTTTCATTGAACACGTATCACC 57.144 39.130 0.00 0.00 0.00 4.02
646 1657 4.387559 TCTTTCATTGAACACGTATCACCG 59.612 41.667 0.00 0.00 0.00 4.94
647 1658 3.579335 TCATTGAACACGTATCACCGA 57.421 42.857 2.93 1.11 0.00 4.69
648 1659 3.915536 TCATTGAACACGTATCACCGAA 58.084 40.909 2.93 0.00 0.00 4.30
649 1660 4.308265 TCATTGAACACGTATCACCGAAA 58.692 39.130 2.93 0.00 0.00 3.46
650 1661 4.750598 TCATTGAACACGTATCACCGAAAA 59.249 37.500 2.93 0.00 0.00 2.29
651 1662 5.410132 TCATTGAACACGTATCACCGAAAAT 59.590 36.000 2.93 0.00 0.00 1.82
652 1663 4.914312 TGAACACGTATCACCGAAAATC 57.086 40.909 0.00 0.00 0.00 2.17
653 1664 4.308265 TGAACACGTATCACCGAAAATCA 58.692 39.130 0.00 0.00 0.00 2.57
654 1665 4.932799 TGAACACGTATCACCGAAAATCAT 59.067 37.500 0.00 0.00 0.00 2.45
655 1666 4.857871 ACACGTATCACCGAAAATCATG 57.142 40.909 0.00 0.00 0.00 3.07
656 1667 4.500127 ACACGTATCACCGAAAATCATGA 58.500 39.130 0.00 0.00 0.00 3.07
657 1668 4.932799 ACACGTATCACCGAAAATCATGAA 59.067 37.500 0.00 0.00 0.00 2.57
658 1669 5.410132 ACACGTATCACCGAAAATCATGAAA 59.590 36.000 0.00 0.00 0.00 2.69
659 1670 6.093495 ACACGTATCACCGAAAATCATGAAAT 59.907 34.615 0.00 0.00 0.00 2.17
660 1671 7.279090 ACACGTATCACCGAAAATCATGAAATA 59.721 33.333 0.00 0.00 0.00 1.40
661 1672 7.793888 CACGTATCACCGAAAATCATGAAATAG 59.206 37.037 0.00 0.00 0.00 1.73
662 1673 7.709182 ACGTATCACCGAAAATCATGAAATAGA 59.291 33.333 0.00 0.00 0.00 1.98
663 1674 8.712363 CGTATCACCGAAAATCATGAAATAGAT 58.288 33.333 0.00 0.00 0.00 1.98
683 1694 9.669353 AATAGATTTAAGATAAATGCAAGCACG 57.331 29.630 0.00 0.00 0.00 5.34
684 1695 7.320443 AGATTTAAGATAAATGCAAGCACGA 57.680 32.000 0.00 0.00 0.00 4.35
685 1696 7.412853 AGATTTAAGATAAATGCAAGCACGAG 58.587 34.615 0.00 0.00 0.00 4.18
686 1697 5.484173 TTAAGATAAATGCAAGCACGAGG 57.516 39.130 0.00 0.00 0.00 4.63
687 1698 3.266510 AGATAAATGCAAGCACGAGGA 57.733 42.857 0.00 0.00 0.00 3.71
688 1699 2.939103 AGATAAATGCAAGCACGAGGAC 59.061 45.455 0.00 0.00 0.00 3.85
689 1700 2.472695 TAAATGCAAGCACGAGGACT 57.527 45.000 0.00 0.00 0.00 3.85
690 1701 1.609208 AAATGCAAGCACGAGGACTT 58.391 45.000 0.00 0.00 0.00 3.01
691 1702 2.472695 AATGCAAGCACGAGGACTTA 57.527 45.000 0.00 0.00 0.00 2.24
692 1703 2.472695 ATGCAAGCACGAGGACTTAA 57.527 45.000 0.00 0.00 0.00 1.85
693 1704 2.248280 TGCAAGCACGAGGACTTAAA 57.752 45.000 0.00 0.00 0.00 1.52
694 1705 2.778299 TGCAAGCACGAGGACTTAAAT 58.222 42.857 0.00 0.00 0.00 1.40
695 1706 2.742053 TGCAAGCACGAGGACTTAAATC 59.258 45.455 0.00 0.00 0.00 2.17
696 1707 2.096013 GCAAGCACGAGGACTTAAATCC 59.904 50.000 0.00 0.00 39.28 3.01
705 1716 2.587522 GGACTTAAATCCTGATGGGCC 58.412 52.381 0.00 0.00 35.68 5.80
706 1717 2.222027 GACTTAAATCCTGATGGGCCG 58.778 52.381 0.00 0.00 34.39 6.13
707 1718 1.133792 ACTTAAATCCTGATGGGCCGG 60.134 52.381 0.00 0.00 34.39 6.13
708 1719 1.142870 CTTAAATCCTGATGGGCCGGA 59.857 52.381 5.05 0.00 34.39 5.14
709 1720 1.217916 TAAATCCTGATGGGCCGGAA 58.782 50.000 5.05 0.00 34.39 4.30
710 1721 0.557729 AAATCCTGATGGGCCGGAAT 59.442 50.000 5.05 0.00 34.39 3.01
711 1722 1.444933 AATCCTGATGGGCCGGAATA 58.555 50.000 5.05 0.00 34.39 1.75
712 1723 0.693049 ATCCTGATGGGCCGGAATAC 59.307 55.000 5.05 0.00 34.39 1.89
713 1724 1.073199 CCTGATGGGCCGGAATACC 59.927 63.158 5.05 1.00 0.00 2.73
714 1725 1.705002 CCTGATGGGCCGGAATACCA 61.705 60.000 5.05 7.99 38.88 3.25
716 1727 0.850100 TGATGGGCCGGAATACCATT 59.150 50.000 17.70 5.96 44.62 3.16
717 1728 1.247567 GATGGGCCGGAATACCATTG 58.752 55.000 17.70 0.00 44.62 2.82
718 1729 0.827507 ATGGGCCGGAATACCATTGC 60.828 55.000 5.05 0.00 42.08 3.56
719 1730 2.200337 GGGCCGGAATACCATTGCC 61.200 63.158 5.05 0.00 41.36 4.52
720 1731 1.454847 GGCCGGAATACCATTGCCA 60.455 57.895 5.05 0.00 41.56 4.92
721 1732 0.827507 GGCCGGAATACCATTGCCAT 60.828 55.000 5.05 0.00 41.56 4.40
722 1733 0.598065 GCCGGAATACCATTGCCATC 59.402 55.000 5.05 0.00 35.59 3.51
723 1734 1.819305 GCCGGAATACCATTGCCATCT 60.819 52.381 5.05 0.00 35.59 2.90
724 1735 2.552155 GCCGGAATACCATTGCCATCTA 60.552 50.000 5.05 0.00 35.59 1.98
725 1736 3.074412 CCGGAATACCATTGCCATCTAC 58.926 50.000 0.00 0.00 35.59 2.59
726 1737 3.244561 CCGGAATACCATTGCCATCTACT 60.245 47.826 0.00 0.00 35.59 2.57
727 1738 4.020573 CCGGAATACCATTGCCATCTACTA 60.021 45.833 0.00 0.00 35.59 1.82
728 1739 5.338381 CCGGAATACCATTGCCATCTACTAT 60.338 44.000 0.00 0.00 35.59 2.12
729 1740 6.127168 CCGGAATACCATTGCCATCTACTATA 60.127 42.308 0.00 0.00 35.59 1.31
730 1741 7.327975 CGGAATACCATTGCCATCTACTATAA 58.672 38.462 0.00 0.00 35.59 0.98
731 1742 7.277981 CGGAATACCATTGCCATCTACTATAAC 59.722 40.741 0.00 0.00 35.59 1.89
732 1743 7.553044 GGAATACCATTGCCATCTACTATAACC 59.447 40.741 0.00 0.00 35.97 2.85
733 1744 5.904984 ACCATTGCCATCTACTATAACCA 57.095 39.130 0.00 0.00 0.00 3.67
734 1745 6.454223 ACCATTGCCATCTACTATAACCAT 57.546 37.500 0.00 0.00 0.00 3.55
735 1746 6.852404 ACCATTGCCATCTACTATAACCATT 58.148 36.000 0.00 0.00 0.00 3.16
736 1747 7.984475 ACCATTGCCATCTACTATAACCATTA 58.016 34.615 0.00 0.00 0.00 1.90
737 1748 8.614814 ACCATTGCCATCTACTATAACCATTAT 58.385 33.333 0.00 0.00 0.00 1.28
738 1749 9.113838 CCATTGCCATCTACTATAACCATTATC 57.886 37.037 0.00 0.00 0.00 1.75
739 1750 8.820933 CATTGCCATCTACTATAACCATTATCG 58.179 37.037 0.00 0.00 0.00 2.92
740 1751 6.338146 TGCCATCTACTATAACCATTATCGC 58.662 40.000 0.00 0.00 0.00 4.58
741 1752 6.154534 TGCCATCTACTATAACCATTATCGCT 59.845 38.462 0.00 0.00 0.00 4.93
742 1753 7.340999 TGCCATCTACTATAACCATTATCGCTA 59.659 37.037 0.00 0.00 0.00 4.26
743 1754 7.648510 GCCATCTACTATAACCATTATCGCTAC 59.351 40.741 0.00 0.00 0.00 3.58
744 1755 8.904834 CCATCTACTATAACCATTATCGCTACT 58.095 37.037 0.00 0.00 0.00 2.57
745 1756 9.938670 CATCTACTATAACCATTATCGCTACTC 57.061 37.037 0.00 0.00 0.00 2.59
746 1757 8.194433 TCTACTATAACCATTATCGCTACTCG 57.806 38.462 0.00 0.00 40.15 4.18
747 1758 6.192234 ACTATAACCATTATCGCTACTCGG 57.808 41.667 0.00 0.00 39.05 4.63
748 1759 5.942236 ACTATAACCATTATCGCTACTCGGA 59.058 40.000 0.00 0.00 39.05 4.55
749 1760 5.717078 ATAACCATTATCGCTACTCGGAA 57.283 39.130 0.00 0.00 39.05 4.30
772 1783 3.653344 GAAATCTTGGAACCCTTGCAAC 58.347 45.455 0.00 0.00 36.01 4.17
845 1857 2.038269 CAAACCGATGACCACCCCG 61.038 63.158 0.00 0.00 0.00 5.73
925 1938 3.090532 ATTCCCTCCGCTCCCCAC 61.091 66.667 0.00 0.00 0.00 4.61
1040 2053 2.807895 CACCGCGTAAGTCACCCG 60.808 66.667 4.92 0.00 41.68 5.28
1041 2054 4.729856 ACCGCGTAAGTCACCCGC 62.730 66.667 4.92 0.00 43.74 6.13
1042 2055 4.430765 CCGCGTAAGTCACCCGCT 62.431 66.667 4.92 0.00 44.92 5.52
1043 2056 2.879462 CGCGTAAGTCACCCGCTC 60.879 66.667 0.00 0.00 44.92 5.03
1044 2057 2.508663 GCGTAAGTCACCCGCTCC 60.509 66.667 0.00 0.00 43.81 4.70
1045 2058 2.183555 CGTAAGTCACCCGCTCCC 59.816 66.667 0.00 0.00 0.00 4.30
1046 2059 2.183555 GTAAGTCACCCGCTCCCG 59.816 66.667 0.00 0.00 0.00 5.14
1047 2060 3.766691 TAAGTCACCCGCTCCCGC 61.767 66.667 0.00 0.00 0.00 6.13
1128 2141 2.305858 ACCGACTAACTTGGTCTCCT 57.694 50.000 4.02 0.00 29.00 3.69
1152 2165 1.723870 GCTGATGATTCCGTGGTGC 59.276 57.895 0.00 0.00 0.00 5.01
1399 2413 2.352032 CCGTGAGTCTCCCACCCTC 61.352 68.421 0.00 0.00 0.00 4.30
1402 2416 1.079256 TGAGTCTCCCACCCTCCTG 59.921 63.158 0.00 0.00 0.00 3.86
1403 2417 2.284995 AGTCTCCCACCCTCCTGC 60.285 66.667 0.00 0.00 0.00 4.85
1404 2418 3.403558 GTCTCCCACCCTCCTGCC 61.404 72.222 0.00 0.00 0.00 4.85
1405 2419 3.940480 TCTCCCACCCTCCTGCCA 61.940 66.667 0.00 0.00 0.00 4.92
1451 2479 3.694566 GCATCTAGGGTTTCGTTTCCATT 59.305 43.478 0.00 0.00 0.00 3.16
1569 2598 2.223618 GGTTTGTCTGGTTTTTGCGCTA 60.224 45.455 9.73 0.00 0.00 4.26
1724 2765 0.645868 GCGAGTCTCCGTTACAATGC 59.354 55.000 0.00 0.00 0.00 3.56
1729 2770 2.038557 AGTCTCCGTTACAATGCCAGTT 59.961 45.455 0.00 0.00 0.00 3.16
1733 2774 2.952978 TCCGTTACAATGCCAGTTTGTT 59.047 40.909 0.00 0.00 38.26 2.83
1765 2806 8.800231 TGGATGATGTTTATATGATTTTTGCG 57.200 30.769 0.00 0.00 0.00 4.85
1820 2861 4.188462 CTGTCCAGTGCCGTTATATTTGA 58.812 43.478 0.00 0.00 0.00 2.69
1821 2862 4.776349 TGTCCAGTGCCGTTATATTTGAT 58.224 39.130 0.00 0.00 0.00 2.57
1823 2864 3.563808 TCCAGTGCCGTTATATTTGATGC 59.436 43.478 0.00 0.00 0.00 3.91
1824 2865 3.314913 CCAGTGCCGTTATATTTGATGCA 59.685 43.478 0.00 0.00 0.00 3.96
1825 2866 4.202000 CCAGTGCCGTTATATTTGATGCAA 60.202 41.667 0.00 0.00 0.00 4.08
1844 2885 4.231439 GCAACTTACCAAAATAACACCCG 58.769 43.478 0.00 0.00 0.00 5.28
1874 2915 7.048512 GTGCTCTGTTACCCTTAACTGATAAT 58.951 38.462 5.05 0.00 42.19 1.28
1904 2945 1.393539 CTCCGTTACAATGTTCTGGCG 59.606 52.381 0.00 0.00 0.00 5.69
1919 2960 7.441890 TGTTCTGGCGTTCTAAAATATTTCA 57.558 32.000 0.10 0.00 0.00 2.69
1921 2962 6.102006 TCTGGCGTTCTAAAATATTTCACG 57.898 37.500 0.10 8.97 0.00 4.35
1935 2976 3.784701 TTTCACGCAAGGTTAGCAAAA 57.215 38.095 0.00 0.00 46.39 2.44
1943 2984 4.438148 GCAAGGTTAGCAAAAGGAAAACA 58.562 39.130 0.00 0.00 0.00 2.83
2027 3069 7.723616 TCTGTTTGGTGAAGGAAAGATGAATTA 59.276 33.333 0.00 0.00 0.00 1.40
2168 3211 7.060600 TGAATCTTGTGACGTAAAGCTTATG 57.939 36.000 0.00 0.00 0.00 1.90
2238 3281 5.441718 TCCATTTTTATCAGGAGAGCACT 57.558 39.130 0.00 0.00 0.00 4.40
2297 3340 2.932614 GTTCTGACGTTGAGGATGATGG 59.067 50.000 0.00 0.00 0.00 3.51
2381 3431 5.469479 ACTTGTTGCTAACATATGTTTGGC 58.531 37.500 25.31 25.63 41.79 4.52
2391 3441 7.012327 GCTAACATATGTTTGGCTGTCTTATCA 59.988 37.037 25.31 2.42 39.31 2.15
2432 3482 2.826488 AGTAGATGAGGGAACAGCAGT 58.174 47.619 0.00 0.00 0.00 4.40
2484 3534 0.745845 GCTTGCCATGTCGATGTCCT 60.746 55.000 0.00 0.00 0.00 3.85
2485 3535 1.293924 CTTGCCATGTCGATGTCCTC 58.706 55.000 0.00 0.00 0.00 3.71
2545 3595 2.273123 CTGGGCTGTGGCATGCTA 59.727 61.111 18.92 9.16 40.87 3.49
2607 3657 3.903467 ACCCTTGACTGCTTTTCTTTCT 58.097 40.909 0.00 0.00 0.00 2.52
2658 3745 8.571336 AGTCATTATGTTGGCTTGCTATTAATC 58.429 33.333 0.00 0.00 0.00 1.75
2661 3748 2.031560 TGTTGGCTTGCTATTAATCGCG 59.968 45.455 0.00 0.00 0.00 5.87
2677 3764 3.021269 TCGCGTTATGTCTTGTGTTCT 57.979 42.857 5.77 0.00 0.00 3.01
2701 3788 7.173907 TCTCCTTTCACTTTCTTATTGCTTCTG 59.826 37.037 0.00 0.00 0.00 3.02
2705 3792 6.748333 TCACTTTCTTATTGCTTCTGATGG 57.252 37.500 0.00 0.00 0.00 3.51
2707 3794 6.372659 TCACTTTCTTATTGCTTCTGATGGTC 59.627 38.462 0.00 0.00 0.00 4.02
2710 3797 5.441718 TCTTATTGCTTCTGATGGTCCTT 57.558 39.130 0.00 0.00 0.00 3.36
2711 3798 5.819991 TCTTATTGCTTCTGATGGTCCTTT 58.180 37.500 0.00 0.00 0.00 3.11
2717 3804 3.415212 CTTCTGATGGTCCTTTTGCTGA 58.585 45.455 0.00 0.00 0.00 4.26
2780 3874 0.820226 GCCCAATTGCTTTCTCCTCC 59.180 55.000 0.00 0.00 0.00 4.30
2783 3877 1.470098 CCAATTGCTTTCTCCTCCGTG 59.530 52.381 0.00 0.00 0.00 4.94
2807 3984 2.079925 GACCAATGGCTGTCTGTTCTC 58.920 52.381 0.00 0.00 0.00 2.87
2814 3991 2.880268 TGGCTGTCTGTTCTCACATTTG 59.120 45.455 0.00 0.00 30.39 2.32
2819 3996 1.881973 TCTGTTCTCACATTTGGCAGC 59.118 47.619 0.00 0.00 30.39 5.25
2835 4012 2.011046 GCAGCCAGGACATCAGAAGTC 61.011 57.143 0.00 0.00 35.29 3.01
2841 4018 5.663106 AGCCAGGACATCAGAAGTCTAATTA 59.337 40.000 5.78 0.00 36.29 1.40
2843 4020 6.995091 GCCAGGACATCAGAAGTCTAATTATT 59.005 38.462 5.78 0.00 36.29 1.40
2882 4059 5.229921 TGTAAAAATCGATGCTAGTTGCC 57.770 39.130 0.00 0.00 42.00 4.52
2921 4107 3.849911 TGTGTGACTATAGTGCAGCTTC 58.150 45.455 10.90 0.00 0.00 3.86
2923 4109 4.705023 TGTGTGACTATAGTGCAGCTTCTA 59.295 41.667 10.90 0.00 0.00 2.10
2924 4110 5.185056 TGTGTGACTATAGTGCAGCTTCTAA 59.815 40.000 10.90 0.00 0.00 2.10
2925 4111 6.100004 GTGTGACTATAGTGCAGCTTCTAAA 58.900 40.000 10.90 0.00 0.00 1.85
2959 4193 7.361201 CGTGGTAACTTCATCAGATTCAAACAT 60.361 37.037 0.00 0.00 37.61 2.71
2960 4194 8.946085 GTGGTAACTTCATCAGATTCAAACATA 58.054 33.333 0.00 0.00 37.61 2.29
2979 4213 9.033481 CAAACATATTAAGTTTGCCCATGTATG 57.967 33.333 10.54 0.00 46.16 2.39
2980 4214 7.896383 ACATATTAAGTTTGCCCATGTATGT 57.104 32.000 0.00 0.00 0.00 2.29
2992 4234 5.174395 GCCCATGTATGTAAATTTGTGCAA 58.826 37.500 0.00 0.00 0.00 4.08
3025 4267 6.331577 TGATAGTGTAAGGTACCCTCTGTA 57.668 41.667 8.74 0.00 30.89 2.74
3057 4299 4.994217 ACAACAAAATCATTTTAAGGCGGG 59.006 37.500 0.00 0.00 0.00 6.13
3129 4517 1.727335 GTCAAGAACCTTAGCGAGTGC 59.273 52.381 0.00 0.00 43.24 4.40
3186 4578 2.401766 GGTGCAGTTGGCCATCTCG 61.402 63.158 13.63 10.38 43.89 4.04
3199 4591 4.155826 TGGCCATCTCGAACAAACATAAAG 59.844 41.667 0.00 0.00 0.00 1.85
3202 4594 6.378582 GCCATCTCGAACAAACATAAAGAAA 58.621 36.000 0.00 0.00 0.00 2.52
3203 4595 6.524586 GCCATCTCGAACAAACATAAAGAAAG 59.475 38.462 0.00 0.00 0.00 2.62
3204 4596 7.023575 CCATCTCGAACAAACATAAAGAAAGG 58.976 38.462 0.00 0.00 0.00 3.11
3221 4613 6.043854 AGAAAGGGAGCTTTACAACTAGAG 57.956 41.667 0.00 0.00 0.00 2.43
3228 4620 5.644206 GGAGCTTTACAACTAGAGGAAAAGG 59.356 44.000 0.00 0.00 0.00 3.11
3234 4626 4.974399 ACAACTAGAGGAAAAGGAACTGG 58.026 43.478 0.00 0.00 40.86 4.00
3404 4796 1.478105 GCCCTTTCAGGTTTATGCAGG 59.522 52.381 0.00 0.00 31.93 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 0.264359 AGCTCTGATGCTAGAGGGGT 59.736 55.000 12.80 0.00 43.49 4.95
34 35 2.813908 GGTCTTACGGCAGGCGTG 60.814 66.667 30.77 15.92 0.00 5.34
42 43 2.575461 GGTCGGTGGGTCTTACGG 59.425 66.667 0.00 0.00 0.00 4.02
52 53 3.803082 CAGCAATGCCGGTCGGTG 61.803 66.667 11.25 1.10 37.65 4.94
61 62 0.734889 ACGATGGTTAGCAGCAATGC 59.265 50.000 0.00 0.00 33.01 3.56
95 96 1.709147 GCATGGCATCGACACCAGTC 61.709 60.000 13.23 4.70 39.88 3.51
96 97 1.746615 GCATGGCATCGACACCAGT 60.747 57.895 13.23 0.85 39.88 4.00
97 98 2.475466 GGCATGGCATCGACACCAG 61.475 63.158 15.47 7.29 39.88 4.00
98 99 2.438254 GGCATGGCATCGACACCA 60.438 61.111 15.47 10.46 41.06 4.17
99 100 2.045708 TTGGCATGGCATCGACACC 61.046 57.895 23.96 0.00 0.00 4.16
100 101 1.137404 GTTGGCATGGCATCGACAC 59.863 57.895 23.96 13.88 0.00 3.67
101 102 1.002257 AGTTGGCATGGCATCGACA 60.002 52.632 23.96 4.41 0.00 4.35
124 125 2.292569 GACGACTAGGACATGGCGATAA 59.707 50.000 0.00 0.00 0.00 1.75
125 126 1.878088 GACGACTAGGACATGGCGATA 59.122 52.381 0.00 0.00 0.00 2.92
128 129 1.298413 CGACGACTAGGACATGGCG 60.298 63.158 0.00 0.00 0.00 5.69
145 146 1.804326 GGACGGACCATCAACGACG 60.804 63.158 0.00 0.00 38.79 5.12
186 187 1.628846 GCTTGTGGAGGAGGGAGTTTA 59.371 52.381 0.00 0.00 0.00 2.01
194 195 1.500474 TAGGGATGCTTGTGGAGGAG 58.500 55.000 0.00 0.00 0.00 3.69
199 200 0.625849 AGGGTTAGGGATGCTTGTGG 59.374 55.000 0.00 0.00 0.00 4.17
201 202 3.190439 AGTTAGGGTTAGGGATGCTTGT 58.810 45.455 0.00 0.00 0.00 3.16
235 244 1.745489 GGAGGCACCGGTGATGAAC 60.745 63.158 38.30 19.27 0.00 3.18
242 251 4.954118 TGGAGTGGAGGCACCGGT 62.954 66.667 0.00 0.00 42.61 5.28
256 265 3.760035 GGAAGCGAGCGAGGTGGA 61.760 66.667 0.00 0.00 0.00 4.02
259 268 4.070552 GGTGGAAGCGAGCGAGGT 62.071 66.667 0.00 0.00 0.00 3.85
268 277 2.877691 GATGTTGGCGGTGGAAGC 59.122 61.111 0.00 0.00 0.00 3.86
269 278 1.671054 ACGATGTTGGCGGTGGAAG 60.671 57.895 0.00 0.00 0.00 3.46
293 302 4.838486 CGAGCTCGGAGACACGGC 62.838 72.222 28.40 0.00 35.37 5.68
317 326 2.443255 CCTCCCATGTATTGTAGGCCTT 59.557 50.000 12.58 0.00 0.00 4.35
386 395 0.879400 CGAGCTGGCTGGCTATCTTG 60.879 60.000 0.00 0.00 43.20 3.02
387 396 1.445095 CGAGCTGGCTGGCTATCTT 59.555 57.895 0.00 0.00 43.20 2.40
388 397 2.506061 CCGAGCTGGCTGGCTATCT 61.506 63.158 0.00 0.00 43.20 1.98
457 1468 7.148474 GCTTGTATCCGTACTGATCTTCAAAAA 60.148 37.037 2.74 0.00 0.00 1.94
459 1470 5.810587 GCTTGTATCCGTACTGATCTTCAAA 59.189 40.000 2.74 0.00 0.00 2.69
462 1473 3.975670 CGCTTGTATCCGTACTGATCTTC 59.024 47.826 2.74 0.00 0.00 2.87
464 1475 2.287668 GCGCTTGTATCCGTACTGATCT 60.288 50.000 0.00 0.00 0.00 2.75
467 1478 1.065102 GAGCGCTTGTATCCGTACTGA 59.935 52.381 13.26 0.00 0.00 3.41
469 1480 1.100510 TGAGCGCTTGTATCCGTACT 58.899 50.000 13.26 0.00 0.00 2.73
471 1482 5.830000 ATATATGAGCGCTTGTATCCGTA 57.170 39.130 13.26 3.35 0.00 4.02
472 1483 4.720649 ATATATGAGCGCTTGTATCCGT 57.279 40.909 13.26 0.64 0.00 4.69
473 1484 5.117745 GCATATATATGAGCGCTTGTATCCG 59.882 44.000 24.06 1.15 35.75 4.18
475 1486 6.133569 CGCATATATATGAGCGCTTGTATC 57.866 41.667 24.06 0.00 43.80 2.24
496 1507 0.531532 ATAGGAGTGAGTGCATGCGC 60.532 55.000 23.64 23.64 39.24 6.09
497 1508 1.202452 TCATAGGAGTGAGTGCATGCG 60.202 52.381 14.09 0.00 0.00 4.73
498 1509 2.609427 TCATAGGAGTGAGTGCATGC 57.391 50.000 11.82 11.82 0.00 4.06
499 1510 2.862536 CGTTCATAGGAGTGAGTGCATG 59.137 50.000 0.00 0.00 0.00 4.06
501 1512 1.404181 GCGTTCATAGGAGTGAGTGCA 60.404 52.381 0.00 0.00 33.16 4.57
502 1513 1.281899 GCGTTCATAGGAGTGAGTGC 58.718 55.000 0.00 0.00 0.00 4.40
504 1515 1.893137 TGTGCGTTCATAGGAGTGAGT 59.107 47.619 0.00 0.00 0.00 3.41
505 1516 2.263077 GTGTGCGTTCATAGGAGTGAG 58.737 52.381 0.00 0.00 0.00 3.51
506 1517 1.616374 TGTGTGCGTTCATAGGAGTGA 59.384 47.619 0.00 0.00 0.00 3.41
507 1518 1.726791 GTGTGTGCGTTCATAGGAGTG 59.273 52.381 0.00 0.00 0.00 3.51
508 1519 1.337823 GGTGTGTGCGTTCATAGGAGT 60.338 52.381 0.00 0.00 0.00 3.85
509 1520 1.359848 GGTGTGTGCGTTCATAGGAG 58.640 55.000 0.00 0.00 0.00 3.69
510 1521 0.036765 GGGTGTGTGCGTTCATAGGA 60.037 55.000 0.00 0.00 0.00 2.94
511 1522 0.321210 TGGGTGTGTGCGTTCATAGG 60.321 55.000 0.00 0.00 0.00 2.57
513 1524 0.106894 TGTGGGTGTGTGCGTTCATA 59.893 50.000 0.00 0.00 0.00 2.15
514 1525 1.153066 TGTGGGTGTGTGCGTTCAT 60.153 52.632 0.00 0.00 0.00 2.57
515 1526 2.109739 GTGTGGGTGTGTGCGTTCA 61.110 57.895 0.00 0.00 0.00 3.18
516 1527 2.713154 GTGTGGGTGTGTGCGTTC 59.287 61.111 0.00 0.00 0.00 3.95
517 1528 2.826738 GGTGTGGGTGTGTGCGTT 60.827 61.111 0.00 0.00 0.00 4.84
518 1529 4.868116 GGGTGTGGGTGTGTGCGT 62.868 66.667 0.00 0.00 0.00 5.24
519 1530 2.463589 ATAGGGTGTGGGTGTGTGCG 62.464 60.000 0.00 0.00 0.00 5.34
520 1531 0.960364 CATAGGGTGTGGGTGTGTGC 60.960 60.000 0.00 0.00 0.00 4.57
521 1532 0.690192 TCATAGGGTGTGGGTGTGTG 59.310 55.000 0.00 0.00 0.00 3.82
522 1533 0.984230 CTCATAGGGTGTGGGTGTGT 59.016 55.000 0.00 0.00 0.00 3.72
523 1534 0.392998 GCTCATAGGGTGTGGGTGTG 60.393 60.000 0.00 0.00 0.00 3.82
524 1535 0.840288 TGCTCATAGGGTGTGGGTGT 60.840 55.000 0.00 0.00 0.00 4.16
525 1536 0.548031 ATGCTCATAGGGTGTGGGTG 59.452 55.000 0.00 0.00 0.00 4.61
526 1537 2.190398 TATGCTCATAGGGTGTGGGT 57.810 50.000 0.00 0.00 0.00 4.51
527 1538 2.026822 GGATATGCTCATAGGGTGTGGG 60.027 54.545 0.00 0.00 0.00 4.61
528 1539 2.354103 CGGATATGCTCATAGGGTGTGG 60.354 54.545 0.00 0.00 0.00 4.17
529 1540 2.562738 TCGGATATGCTCATAGGGTGTG 59.437 50.000 0.00 0.00 0.00 3.82
530 1541 2.828520 CTCGGATATGCTCATAGGGTGT 59.171 50.000 0.00 0.00 0.00 4.16
531 1542 3.092301 TCTCGGATATGCTCATAGGGTG 58.908 50.000 0.00 0.00 0.00 4.61
532 1543 3.010696 TCTCTCGGATATGCTCATAGGGT 59.989 47.826 0.00 0.00 0.00 4.34
533 1544 3.380004 GTCTCTCGGATATGCTCATAGGG 59.620 52.174 0.00 0.00 0.00 3.53
534 1545 4.096231 CAGTCTCTCGGATATGCTCATAGG 59.904 50.000 0.00 0.00 0.00 2.57
535 1546 4.940654 TCAGTCTCTCGGATATGCTCATAG 59.059 45.833 0.00 0.00 0.00 2.23
536 1547 4.911390 TCAGTCTCTCGGATATGCTCATA 58.089 43.478 0.00 0.00 0.00 2.15
537 1548 3.758023 CTCAGTCTCTCGGATATGCTCAT 59.242 47.826 0.00 0.00 0.00 2.90
538 1549 3.145286 CTCAGTCTCTCGGATATGCTCA 58.855 50.000 0.00 0.00 0.00 4.26
539 1550 2.095263 GCTCAGTCTCTCGGATATGCTC 60.095 54.545 0.00 0.00 0.00 4.26
540 1551 1.885887 GCTCAGTCTCTCGGATATGCT 59.114 52.381 0.00 0.00 0.00 3.79
541 1552 1.067915 GGCTCAGTCTCTCGGATATGC 60.068 57.143 0.00 0.00 0.00 3.14
542 1553 1.198867 CGGCTCAGTCTCTCGGATATG 59.801 57.143 0.00 0.00 0.00 1.78
543 1554 1.072489 TCGGCTCAGTCTCTCGGATAT 59.928 52.381 0.00 0.00 0.00 1.63
544 1555 0.468648 TCGGCTCAGTCTCTCGGATA 59.531 55.000 0.00 0.00 0.00 2.59
545 1556 0.179004 ATCGGCTCAGTCTCTCGGAT 60.179 55.000 0.00 0.00 0.00 4.18
546 1557 0.468648 TATCGGCTCAGTCTCTCGGA 59.531 55.000 0.00 0.00 0.00 4.55
547 1558 1.529226 ATATCGGCTCAGTCTCTCGG 58.471 55.000 0.00 0.00 0.00 4.63
548 1559 3.935828 TGATATATCGGCTCAGTCTCTCG 59.064 47.826 8.19 0.00 0.00 4.04
549 1560 5.822519 AGATGATATATCGGCTCAGTCTCTC 59.177 44.000 8.19 0.00 0.00 3.20
550 1561 5.754782 AGATGATATATCGGCTCAGTCTCT 58.245 41.667 8.19 0.00 0.00 3.10
551 1562 6.094742 TCAAGATGATATATCGGCTCAGTCTC 59.905 42.308 8.19 0.00 0.00 3.36
552 1563 5.948758 TCAAGATGATATATCGGCTCAGTCT 59.051 40.000 8.19 1.02 0.00 3.24
553 1564 6.094742 TCTCAAGATGATATATCGGCTCAGTC 59.905 42.308 8.19 0.00 0.00 3.51
554 1565 5.948758 TCTCAAGATGATATATCGGCTCAGT 59.051 40.000 8.19 0.00 0.00 3.41
555 1566 6.448207 TCTCAAGATGATATATCGGCTCAG 57.552 41.667 8.19 7.42 0.00 3.35
556 1567 7.415592 AATCTCAAGATGATATATCGGCTCA 57.584 36.000 8.19 0.00 34.49 4.26
557 1568 8.715191 AAAATCTCAAGATGATATATCGGCTC 57.285 34.615 8.19 5.21 34.49 4.70
567 1578 9.171877 GGTGACTTCTTAAAATCTCAAGATGAT 57.828 33.333 0.00 0.00 34.49 2.45
568 1579 7.331934 CGGTGACTTCTTAAAATCTCAAGATGA 59.668 37.037 0.00 0.00 34.49 2.92
569 1580 7.118390 ACGGTGACTTCTTAAAATCTCAAGATG 59.882 37.037 0.00 0.00 34.49 2.90
570 1581 7.162082 ACGGTGACTTCTTAAAATCTCAAGAT 58.838 34.615 0.00 0.00 36.07 2.40
571 1582 6.522054 ACGGTGACTTCTTAAAATCTCAAGA 58.478 36.000 0.00 0.00 0.00 3.02
572 1583 6.787085 ACGGTGACTTCTTAAAATCTCAAG 57.213 37.500 0.00 0.00 0.00 3.02
573 1584 7.095940 CGTTACGGTGACTTCTTAAAATCTCAA 60.096 37.037 0.00 0.00 0.00 3.02
574 1585 6.364165 CGTTACGGTGACTTCTTAAAATCTCA 59.636 38.462 0.00 0.00 0.00 3.27
575 1586 6.669268 GCGTTACGGTGACTTCTTAAAATCTC 60.669 42.308 6.94 0.00 0.00 2.75
576 1587 5.119743 GCGTTACGGTGACTTCTTAAAATCT 59.880 40.000 6.94 0.00 0.00 2.40
577 1588 5.311271 GCGTTACGGTGACTTCTTAAAATC 58.689 41.667 6.94 0.00 0.00 2.17
578 1589 4.152938 GGCGTTACGGTGACTTCTTAAAAT 59.847 41.667 6.94 0.00 0.00 1.82
579 1590 3.494251 GGCGTTACGGTGACTTCTTAAAA 59.506 43.478 6.94 0.00 0.00 1.52
580 1591 3.059166 GGCGTTACGGTGACTTCTTAAA 58.941 45.455 6.94 0.00 0.00 1.52
581 1592 2.297033 AGGCGTTACGGTGACTTCTTAA 59.703 45.455 6.94 0.00 0.00 1.85
582 1593 1.888512 AGGCGTTACGGTGACTTCTTA 59.111 47.619 6.94 0.00 0.00 2.10
583 1594 0.677842 AGGCGTTACGGTGACTTCTT 59.322 50.000 6.94 0.00 0.00 2.52
584 1595 0.243095 GAGGCGTTACGGTGACTTCT 59.757 55.000 6.94 0.00 0.00 2.85
585 1596 1.069378 CGAGGCGTTACGGTGACTTC 61.069 60.000 6.94 0.00 0.00 3.01
586 1597 1.080974 CGAGGCGTTACGGTGACTT 60.081 57.895 6.94 0.00 0.00 3.01
587 1598 0.955428 TACGAGGCGTTACGGTGACT 60.955 55.000 6.94 0.00 41.54 3.41
588 1599 0.522076 CTACGAGGCGTTACGGTGAC 60.522 60.000 6.94 0.00 41.54 3.67
589 1600 0.955428 ACTACGAGGCGTTACGGTGA 60.955 55.000 6.94 0.00 41.54 4.02
590 1601 0.522076 GACTACGAGGCGTTACGGTG 60.522 60.000 6.94 0.00 41.54 4.94
591 1602 1.796796 GACTACGAGGCGTTACGGT 59.203 57.895 6.94 0.00 41.54 4.83
592 1603 1.297158 CGACTACGAGGCGTTACGG 60.297 63.158 6.94 0.00 42.99 4.02
593 1604 4.258781 CGACTACGAGGCGTTACG 57.741 61.111 0.00 0.00 42.99 3.18
604 1615 3.002102 AGAAGAGGTTCTCGTCGACTAC 58.998 50.000 14.70 6.25 42.23 2.73
605 1616 3.331478 AGAAGAGGTTCTCGTCGACTA 57.669 47.619 14.70 0.95 42.23 2.59
606 1617 2.188062 AGAAGAGGTTCTCGTCGACT 57.812 50.000 14.70 0.00 42.23 4.18
607 1618 2.993449 AAGAAGAGGTTCTCGTCGAC 57.007 50.000 5.18 5.18 42.59 4.20
608 1619 2.882761 TGAAAGAAGAGGTTCTCGTCGA 59.117 45.455 0.00 0.00 42.59 4.20
609 1620 3.284323 TGAAAGAAGAGGTTCTCGTCG 57.716 47.619 5.50 0.00 42.59 5.12
610 1621 5.230942 TCAATGAAAGAAGAGGTTCTCGTC 58.769 41.667 3.30 3.30 42.59 4.20
611 1622 5.215252 TCAATGAAAGAAGAGGTTCTCGT 57.785 39.130 0.00 0.00 42.59 4.18
612 1623 5.466728 TGTTCAATGAAAGAAGAGGTTCTCG 59.533 40.000 0.00 0.00 42.59 4.04
613 1624 6.564873 CGTGTTCAATGAAAGAAGAGGTTCTC 60.565 42.308 0.00 0.00 42.59 2.87
614 1625 5.237344 CGTGTTCAATGAAAGAAGAGGTTCT 59.763 40.000 0.00 0.00 45.56 3.01
615 1626 5.007724 ACGTGTTCAATGAAAGAAGAGGTTC 59.992 40.000 0.00 0.00 34.92 3.62
616 1627 4.881850 ACGTGTTCAATGAAAGAAGAGGTT 59.118 37.500 0.00 0.00 34.92 3.50
617 1628 4.451900 ACGTGTTCAATGAAAGAAGAGGT 58.548 39.130 0.00 0.00 34.08 3.85
618 1629 6.368791 TGATACGTGTTCAATGAAAGAAGAGG 59.631 38.462 0.00 0.00 32.50 3.69
619 1630 7.230222 GTGATACGTGTTCAATGAAAGAAGAG 58.770 38.462 0.00 0.00 0.00 2.85
620 1631 6.147164 GGTGATACGTGTTCAATGAAAGAAGA 59.853 38.462 0.00 0.00 0.00 2.87
621 1632 6.307155 GGTGATACGTGTTCAATGAAAGAAG 58.693 40.000 0.00 0.00 0.00 2.85
622 1633 5.107259 CGGTGATACGTGTTCAATGAAAGAA 60.107 40.000 0.00 0.00 0.00 2.52
623 1634 4.387559 CGGTGATACGTGTTCAATGAAAGA 59.612 41.667 0.00 0.00 0.00 2.52
624 1635 4.387559 TCGGTGATACGTGTTCAATGAAAG 59.612 41.667 0.00 0.00 34.94 2.62
625 1636 4.308265 TCGGTGATACGTGTTCAATGAAA 58.692 39.130 0.00 0.00 34.94 2.69
626 1637 3.915536 TCGGTGATACGTGTTCAATGAA 58.084 40.909 0.00 0.00 34.94 2.57
627 1638 3.579335 TCGGTGATACGTGTTCAATGA 57.421 42.857 0.00 0.35 34.94 2.57
628 1639 4.655440 TTTCGGTGATACGTGTTCAATG 57.345 40.909 0.00 0.00 34.94 2.82
629 1640 5.410132 TGATTTTCGGTGATACGTGTTCAAT 59.590 36.000 0.00 0.00 34.94 2.57
630 1641 4.750598 TGATTTTCGGTGATACGTGTTCAA 59.249 37.500 0.00 0.00 34.94 2.69
631 1642 4.308265 TGATTTTCGGTGATACGTGTTCA 58.692 39.130 0.00 0.00 34.94 3.18
632 1643 4.914312 TGATTTTCGGTGATACGTGTTC 57.086 40.909 0.00 0.00 34.94 3.18
633 1644 4.932799 TCATGATTTTCGGTGATACGTGTT 59.067 37.500 0.00 0.00 34.94 3.32
634 1645 4.500127 TCATGATTTTCGGTGATACGTGT 58.500 39.130 0.00 0.00 34.94 4.49
635 1646 5.463499 TTCATGATTTTCGGTGATACGTG 57.537 39.130 0.00 0.00 34.94 4.49
636 1647 6.677781 ATTTCATGATTTTCGGTGATACGT 57.322 33.333 0.00 0.00 34.94 3.57
637 1648 8.072238 TCTATTTCATGATTTTCGGTGATACG 57.928 34.615 0.00 0.00 0.00 3.06
657 1668 9.669353 CGTGCTTGCATTTATCTTAAATCTATT 57.331 29.630 0.00 0.00 0.00 1.73
658 1669 9.056005 TCGTGCTTGCATTTATCTTAAATCTAT 57.944 29.630 0.00 0.00 0.00 1.98
659 1670 8.432110 TCGTGCTTGCATTTATCTTAAATCTA 57.568 30.769 0.00 0.00 0.00 1.98
660 1671 7.320443 TCGTGCTTGCATTTATCTTAAATCT 57.680 32.000 0.00 0.00 0.00 2.40
661 1672 6.634436 CCTCGTGCTTGCATTTATCTTAAATC 59.366 38.462 0.00 0.00 0.00 2.17
662 1673 6.318648 TCCTCGTGCTTGCATTTATCTTAAAT 59.681 34.615 0.00 0.00 0.00 1.40
663 1674 5.645929 TCCTCGTGCTTGCATTTATCTTAAA 59.354 36.000 0.00 0.00 0.00 1.52
664 1675 5.064707 GTCCTCGTGCTTGCATTTATCTTAA 59.935 40.000 0.00 0.00 0.00 1.85
665 1676 4.570772 GTCCTCGTGCTTGCATTTATCTTA 59.429 41.667 0.00 0.00 0.00 2.10
666 1677 3.375299 GTCCTCGTGCTTGCATTTATCTT 59.625 43.478 0.00 0.00 0.00 2.40
667 1678 2.939103 GTCCTCGTGCTTGCATTTATCT 59.061 45.455 0.00 0.00 0.00 1.98
668 1679 2.939103 AGTCCTCGTGCTTGCATTTATC 59.061 45.455 0.00 0.00 0.00 1.75
669 1680 2.991250 AGTCCTCGTGCTTGCATTTAT 58.009 42.857 0.00 0.00 0.00 1.40
670 1681 2.472695 AGTCCTCGTGCTTGCATTTA 57.527 45.000 0.00 0.00 0.00 1.40
671 1682 1.609208 AAGTCCTCGTGCTTGCATTT 58.391 45.000 0.00 0.00 0.00 2.32
672 1683 2.472695 TAAGTCCTCGTGCTTGCATT 57.527 45.000 0.00 0.00 0.00 3.56
673 1684 2.472695 TTAAGTCCTCGTGCTTGCAT 57.527 45.000 0.00 0.00 0.00 3.96
674 1685 2.248280 TTTAAGTCCTCGTGCTTGCA 57.752 45.000 0.00 0.00 0.00 4.08
675 1686 2.096013 GGATTTAAGTCCTCGTGCTTGC 59.904 50.000 9.67 0.00 35.32 4.01
676 1687 3.372206 CAGGATTTAAGTCCTCGTGCTTG 59.628 47.826 16.20 1.62 45.51 4.01
677 1688 3.260884 TCAGGATTTAAGTCCTCGTGCTT 59.739 43.478 16.20 0.00 45.51 3.91
678 1689 2.832129 TCAGGATTTAAGTCCTCGTGCT 59.168 45.455 16.20 0.00 45.51 4.40
679 1690 3.247006 TCAGGATTTAAGTCCTCGTGC 57.753 47.619 16.20 0.00 45.51 5.34
680 1691 4.122776 CCATCAGGATTTAAGTCCTCGTG 58.877 47.826 16.20 15.97 45.51 4.35
681 1692 3.134804 CCCATCAGGATTTAAGTCCTCGT 59.865 47.826 16.20 5.81 45.51 4.18
682 1693 3.733337 CCCATCAGGATTTAAGTCCTCG 58.267 50.000 16.20 11.95 45.51 4.63
683 1694 3.481453 GCCCATCAGGATTTAAGTCCTC 58.519 50.000 16.20 1.40 45.51 3.71
685 1696 2.587522 GGCCCATCAGGATTTAAGTCC 58.412 52.381 8.94 8.94 38.24 3.85
686 1697 2.222027 CGGCCCATCAGGATTTAAGTC 58.778 52.381 0.00 0.00 38.24 3.01
687 1698 1.133792 CCGGCCCATCAGGATTTAAGT 60.134 52.381 0.00 0.00 38.24 2.24
688 1699 1.142870 TCCGGCCCATCAGGATTTAAG 59.857 52.381 0.00 0.00 38.24 1.85
689 1700 1.217916 TCCGGCCCATCAGGATTTAA 58.782 50.000 0.00 0.00 38.24 1.52
690 1701 1.217916 TTCCGGCCCATCAGGATTTA 58.782 50.000 0.00 0.00 38.84 1.40
691 1702 0.557729 ATTCCGGCCCATCAGGATTT 59.442 50.000 0.00 0.00 38.84 2.17
692 1703 1.073923 GTATTCCGGCCCATCAGGATT 59.926 52.381 0.00 0.00 38.84 3.01
693 1704 0.693049 GTATTCCGGCCCATCAGGAT 59.307 55.000 0.00 0.00 38.84 3.24
694 1705 1.415672 GGTATTCCGGCCCATCAGGA 61.416 60.000 0.00 0.00 38.24 3.86
695 1706 1.073199 GGTATTCCGGCCCATCAGG 59.927 63.158 0.00 0.00 39.47 3.86
696 1707 0.401738 ATGGTATTCCGGCCCATCAG 59.598 55.000 0.00 0.00 33.73 2.90
697 1708 0.850100 AATGGTATTCCGGCCCATCA 59.150 50.000 13.04 0.70 38.00 3.07
698 1709 1.247567 CAATGGTATTCCGGCCCATC 58.752 55.000 13.04 0.00 38.00 3.51
699 1710 0.827507 GCAATGGTATTCCGGCCCAT 60.828 55.000 0.00 2.49 40.68 4.00
700 1711 1.454847 GCAATGGTATTCCGGCCCA 60.455 57.895 0.00 0.00 36.30 5.36
701 1712 2.200337 GGCAATGGTATTCCGGCCC 61.200 63.158 0.00 0.00 40.08 5.80
702 1713 0.827507 ATGGCAATGGTATTCCGGCC 60.828 55.000 0.00 10.39 43.56 6.13
703 1714 0.598065 GATGGCAATGGTATTCCGGC 59.402 55.000 0.00 0.00 36.30 6.13
704 1715 2.276732 AGATGGCAATGGTATTCCGG 57.723 50.000 0.00 0.00 36.30 5.14
705 1716 4.008074 AGTAGATGGCAATGGTATTCCG 57.992 45.455 0.00 0.00 36.30 4.30
706 1717 7.553044 GGTTATAGTAGATGGCAATGGTATTCC 59.447 40.741 0.00 0.00 0.00 3.01
707 1718 8.100791 TGGTTATAGTAGATGGCAATGGTATTC 58.899 37.037 0.00 0.00 0.00 1.75
708 1719 7.984475 TGGTTATAGTAGATGGCAATGGTATT 58.016 34.615 0.00 0.00 0.00 1.89
709 1720 7.568128 TGGTTATAGTAGATGGCAATGGTAT 57.432 36.000 0.00 0.00 0.00 2.73
710 1721 7.568128 ATGGTTATAGTAGATGGCAATGGTA 57.432 36.000 0.00 0.00 0.00 3.25
711 1722 5.904984 TGGTTATAGTAGATGGCAATGGT 57.095 39.130 0.00 0.00 0.00 3.55
712 1723 9.113838 GATAATGGTTATAGTAGATGGCAATGG 57.886 37.037 0.00 0.00 0.00 3.16
713 1724 8.820933 CGATAATGGTTATAGTAGATGGCAATG 58.179 37.037 0.00 0.00 0.00 2.82
714 1725 7.495934 GCGATAATGGTTATAGTAGATGGCAAT 59.504 37.037 0.00 0.00 0.00 3.56
715 1726 6.816640 GCGATAATGGTTATAGTAGATGGCAA 59.183 38.462 0.00 0.00 0.00 4.52
716 1727 6.154534 AGCGATAATGGTTATAGTAGATGGCA 59.845 38.462 0.00 0.00 0.00 4.92
717 1728 6.574350 AGCGATAATGGTTATAGTAGATGGC 58.426 40.000 0.00 0.00 0.00 4.40
718 1729 8.904834 AGTAGCGATAATGGTTATAGTAGATGG 58.095 37.037 0.00 0.00 0.00 3.51
719 1730 9.938670 GAGTAGCGATAATGGTTATAGTAGATG 57.061 37.037 0.00 0.00 0.00 2.90
720 1731 8.828644 CGAGTAGCGATAATGGTTATAGTAGAT 58.171 37.037 0.00 0.00 44.57 1.98
721 1732 7.279536 CCGAGTAGCGATAATGGTTATAGTAGA 59.720 40.741 0.00 0.00 44.57 2.59
722 1733 7.279536 TCCGAGTAGCGATAATGGTTATAGTAG 59.720 40.741 0.00 0.00 44.57 2.57
723 1734 7.105588 TCCGAGTAGCGATAATGGTTATAGTA 58.894 38.462 0.00 0.00 44.57 1.82
724 1735 5.942236 TCCGAGTAGCGATAATGGTTATAGT 59.058 40.000 0.00 0.00 44.57 2.12
725 1736 6.432607 TCCGAGTAGCGATAATGGTTATAG 57.567 41.667 0.00 0.00 44.57 1.31
726 1737 6.615088 GTTCCGAGTAGCGATAATGGTTATA 58.385 40.000 0.00 0.00 44.57 0.98
727 1738 5.467705 GTTCCGAGTAGCGATAATGGTTAT 58.532 41.667 0.00 0.00 44.57 1.89
728 1739 4.555313 CGTTCCGAGTAGCGATAATGGTTA 60.555 45.833 0.00 0.00 44.57 2.85
729 1740 3.714391 GTTCCGAGTAGCGATAATGGTT 58.286 45.455 0.00 0.00 44.57 3.67
730 1741 2.287427 CGTTCCGAGTAGCGATAATGGT 60.287 50.000 0.00 0.00 44.57 3.55
731 1742 2.031420 TCGTTCCGAGTAGCGATAATGG 60.031 50.000 0.00 0.00 44.57 3.16
732 1743 3.263602 TCGTTCCGAGTAGCGATAATG 57.736 47.619 0.00 0.00 44.57 1.90
733 1744 3.976793 TTCGTTCCGAGTAGCGATAAT 57.023 42.857 0.00 0.00 44.57 1.28
734 1745 3.763097 TTTCGTTCCGAGTAGCGATAA 57.237 42.857 0.00 0.00 44.57 1.75
735 1746 3.562973 AGATTTCGTTCCGAGTAGCGATA 59.437 43.478 0.00 0.00 44.57 2.92
736 1747 2.358267 AGATTTCGTTCCGAGTAGCGAT 59.642 45.455 0.00 0.00 44.57 4.58
737 1748 1.741706 AGATTTCGTTCCGAGTAGCGA 59.258 47.619 0.00 0.00 44.57 4.93
738 1749 2.190325 AGATTTCGTTCCGAGTAGCG 57.810 50.000 0.00 0.00 37.14 4.26
739 1750 2.603560 CCAAGATTTCGTTCCGAGTAGC 59.396 50.000 0.00 0.00 37.14 3.58
740 1751 4.106029 TCCAAGATTTCGTTCCGAGTAG 57.894 45.455 0.00 0.00 37.14 2.57
741 1752 4.240096 GTTCCAAGATTTCGTTCCGAGTA 58.760 43.478 0.00 0.00 37.14 2.59
742 1753 3.064931 GTTCCAAGATTTCGTTCCGAGT 58.935 45.455 0.00 0.00 37.14 4.18
743 1754 2.415512 GGTTCCAAGATTTCGTTCCGAG 59.584 50.000 0.00 0.00 37.14 4.63
744 1755 2.419667 GGTTCCAAGATTTCGTTCCGA 58.580 47.619 0.00 0.00 0.00 4.55
745 1756 1.467342 GGGTTCCAAGATTTCGTTCCG 59.533 52.381 0.00 0.00 0.00 4.30
746 1757 2.791655 AGGGTTCCAAGATTTCGTTCC 58.208 47.619 0.00 0.00 0.00 3.62
747 1758 3.611766 GCAAGGGTTCCAAGATTTCGTTC 60.612 47.826 0.00 0.00 0.00 3.95
748 1759 2.296190 GCAAGGGTTCCAAGATTTCGTT 59.704 45.455 0.00 0.00 0.00 3.85
749 1760 1.886542 GCAAGGGTTCCAAGATTTCGT 59.113 47.619 0.00 0.00 0.00 3.85
772 1783 3.947132 CTGGACCGGCTCTGCACAG 62.947 68.421 0.00 0.00 0.00 3.66
828 1840 2.349755 CGGGGTGGTCATCGGTTT 59.650 61.111 0.00 0.00 0.00 3.27
954 1967 3.264845 TTTGGGGAGGGTGAGGGC 61.265 66.667 0.00 0.00 0.00 5.19
955 1968 3.090765 CTTTGGGGAGGGTGAGGG 58.909 66.667 0.00 0.00 0.00 4.30
1128 2141 1.737236 CACGGAATCATCAGCGGAAAA 59.263 47.619 0.00 0.00 0.00 2.29
1320 2334 2.435586 CCTGAACTCAGCCCTGCG 60.436 66.667 0.89 0.00 42.47 5.18
1399 2413 1.560505 AAGCAAAACCCTATGGCAGG 58.439 50.000 0.00 0.00 45.07 4.85
1402 2416 3.118775 CCCTAAAAGCAAAACCCTATGGC 60.119 47.826 0.00 0.00 33.59 4.40
1403 2417 4.093743 ACCCTAAAAGCAAAACCCTATGG 58.906 43.478 0.00 0.00 37.80 2.74
1404 2418 5.738619 AACCCTAAAAGCAAAACCCTATG 57.261 39.130 0.00 0.00 0.00 2.23
1405 2419 6.530120 CAAAACCCTAAAAGCAAAACCCTAT 58.470 36.000 0.00 0.00 0.00 2.57
1724 2765 8.455903 ACATCATCCATATTCTAACAAACTGG 57.544 34.615 0.00 0.00 0.00 4.00
1765 2806 8.032451 ACCAACATTATTAATTACACAAGCACC 58.968 33.333 0.00 0.00 0.00 5.01
1820 2861 5.565834 CGGGTGTTATTTTGGTAAGTTGCAT 60.566 40.000 0.00 0.00 0.00 3.96
1821 2862 4.261656 CGGGTGTTATTTTGGTAAGTTGCA 60.262 41.667 0.00 0.00 0.00 4.08
1823 2864 5.692613 TCGGGTGTTATTTTGGTAAGTTG 57.307 39.130 0.00 0.00 0.00 3.16
1824 2865 4.216902 GCTCGGGTGTTATTTTGGTAAGTT 59.783 41.667 0.00 0.00 0.00 2.66
1825 2866 3.754850 GCTCGGGTGTTATTTTGGTAAGT 59.245 43.478 0.00 0.00 0.00 2.24
1844 2885 5.388243 GTTAAGGGTAACAGAGCACAGCTC 61.388 50.000 10.88 10.88 42.40 4.09
1856 2897 5.121105 ACGGCATTATCAGTTAAGGGTAAC 58.879 41.667 0.00 0.00 40.05 2.50
1874 2915 1.174078 TGTAACGGAGACTGACGGCA 61.174 55.000 0.00 0.00 0.00 5.69
1904 2945 9.274065 CTAACCTTGCGTGAAATATTTTAGAAC 57.726 33.333 1.43 0.00 0.00 3.01
1919 2960 1.975660 TCCTTTTGCTAACCTTGCGT 58.024 45.000 0.00 0.00 0.00 5.24
1921 2962 4.438148 TGTTTTCCTTTTGCTAACCTTGC 58.562 39.130 0.00 0.00 0.00 4.01
1935 2976 6.800890 AGGGGTAACATATTTCTGTTTTCCT 58.199 36.000 0.00 0.00 39.88 3.36
1943 2984 6.102615 TGGCAGATAAGGGGTAACATATTTCT 59.897 38.462 0.00 0.00 39.74 2.52
2027 3069 7.685155 GCATGCATTAACCAGTTAGGATCAAAT 60.685 37.037 14.21 0.00 41.22 2.32
2168 3211 9.429359 ACTGATATTACTTGAATGCATAGTAGC 57.571 33.333 0.00 0.00 0.00 3.58
2238 3281 1.279271 GTCTTGGCCTTCTTGGAGCTA 59.721 52.381 3.32 0.00 38.35 3.32
2297 3340 6.846283 GCGATGCATAAATTTATATACCTCGC 59.154 38.462 24.39 24.39 0.00 5.03
2381 3431 3.017442 TCGTCCTCCTGTGATAAGACAG 58.983 50.000 0.00 0.00 42.68 3.51
2391 3441 2.599408 TTTACTCCTCGTCCTCCTGT 57.401 50.000 0.00 0.00 0.00 4.00
2432 3482 3.566273 CAAACGCTGATTTGCACCA 57.434 47.368 0.00 0.00 33.07 4.17
2566 3616 5.533528 AGGGTTTTAAGCTTTTCTTCGCTAA 59.466 36.000 3.20 0.00 34.96 3.09
2635 3685 6.306356 GCGATTAATAGCAAGCCAACATAATG 59.694 38.462 14.80 0.00 0.00 1.90
2658 3745 2.092211 GGAGAACACAAGACATAACGCG 59.908 50.000 3.53 3.53 0.00 6.01
2661 3748 6.483640 AGTGAAAGGAGAACACAAGACATAAC 59.516 38.462 0.00 0.00 37.05 1.89
2677 3764 6.998074 TCAGAAGCAATAAGAAAGTGAAAGGA 59.002 34.615 0.00 0.00 0.00 3.36
2701 3788 3.858503 GCAAGTTCAGCAAAAGGACCATC 60.859 47.826 0.00 0.00 0.00 3.51
2705 3792 2.620585 AGAGCAAGTTCAGCAAAAGGAC 59.379 45.455 0.00 0.00 0.00 3.85
2707 3794 3.067180 TCAAGAGCAAGTTCAGCAAAAGG 59.933 43.478 0.00 0.00 0.00 3.11
2710 3797 3.282021 ACTCAAGAGCAAGTTCAGCAAA 58.718 40.909 0.00 0.00 0.00 3.68
2711 3798 2.923121 ACTCAAGAGCAAGTTCAGCAA 58.077 42.857 0.00 0.00 0.00 3.91
2717 3804 3.193267 TGCACAAAACTCAAGAGCAAGTT 59.807 39.130 0.00 0.00 37.32 2.66
2750 3837 4.192429 AGCAATTGGGCACAATCTTAAC 57.808 40.909 16.04 3.07 46.25 2.01
2783 3877 0.883833 CAGACAGCCATTGGTCAACC 59.116 55.000 4.26 0.00 36.50 3.77
2807 3984 1.180456 TGTCCTGGCTGCCAAATGTG 61.180 55.000 23.51 10.35 30.80 3.21
2814 3991 0.747283 CTTCTGATGTCCTGGCTGCC 60.747 60.000 12.87 12.87 0.00 4.85
2819 3996 8.970859 AAATAATTAGACTTCTGATGTCCTGG 57.029 34.615 17.16 0.00 35.21 4.45
2852 4029 5.185454 AGCATCGATTTTTACATCCTGTCA 58.815 37.500 0.00 0.00 0.00 3.58
2921 4107 5.178623 TGAAGTTACCACGCTTCATGTTTAG 59.821 40.000 3.24 0.00 44.01 1.85
2923 4109 3.880490 TGAAGTTACCACGCTTCATGTTT 59.120 39.130 3.24 0.00 44.01 2.83
2924 4110 3.472652 TGAAGTTACCACGCTTCATGTT 58.527 40.909 3.24 0.00 44.01 2.71
2925 4111 3.120321 TGAAGTTACCACGCTTCATGT 57.880 42.857 3.24 0.00 44.01 3.21
2979 4213 9.881529 ATCAATTGTTTCATTGCACAAATTTAC 57.118 25.926 5.13 0.00 36.50 2.01
2992 4234 9.174166 GGTACCTTACACTATCAATTGTTTCAT 57.826 33.333 4.06 0.00 0.00 2.57
3129 4517 9.567848 GTAGATAGTCTTCTTCACTTCTCTTTG 57.432 37.037 0.00 0.00 0.00 2.77
3186 4578 6.332735 AGCTCCCTTTCTTTATGTTTGTTC 57.667 37.500 0.00 0.00 0.00 3.18
3199 4591 5.046520 TCCTCTAGTTGTAAAGCTCCCTTTC 60.047 44.000 0.00 0.00 41.37 2.62
3202 4594 4.062490 TCCTCTAGTTGTAAAGCTCCCT 57.938 45.455 0.00 0.00 0.00 4.20
3203 4595 4.820894 TTCCTCTAGTTGTAAAGCTCCC 57.179 45.455 0.00 0.00 0.00 4.30
3204 4596 5.644206 CCTTTTCCTCTAGTTGTAAAGCTCC 59.356 44.000 0.00 0.00 0.00 4.70
3221 4613 5.685728 ACAGCTATATCCAGTTCCTTTTCC 58.314 41.667 0.00 0.00 0.00 3.13
3228 4620 5.303971 AGCAATGACAGCTATATCCAGTTC 58.696 41.667 0.00 0.00 41.32 3.01



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.