Multiple sequence alignment - TraesCS2A01G395100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G395100 chr2A 100.000 2531 0 0 1 2531 646844049 646846579 0.000000e+00 4674.0
1 TraesCS2A01G395100 chr2D 86.961 2063 146 63 1 2008 500404325 500402331 0.000000e+00 2206.0
2 TraesCS2A01G395100 chr2B 86.722 2041 137 52 1 2008 588927357 588929296 0.000000e+00 2145.0
3 TraesCS2A01G395100 chr7A 96.407 167 6 0 2365 2531 705065500 705065666 2.480000e-70 276.0
4 TraesCS2A01G395100 chr7A 84.706 85 11 2 2045 2128 45733924 45733841 1.610000e-12 84.2
5 TraesCS2A01G395100 chr7A 86.885 61 6 2 2045 2103 43498319 43498259 1.620000e-07 67.6
6 TraesCS2A01G395100 chr3A 95.783 166 7 0 2365 2530 664269647 664269812 4.150000e-68 268.0
7 TraesCS2A01G395100 chr3A 80.808 99 16 3 2007 2103 17781581 17781678 9.710000e-10 75.0
8 TraesCS2A01G395100 chr3D 92.727 165 12 0 2367 2531 584567267 584567431 3.250000e-59 239.0
9 TraesCS2A01G395100 chr7B 91.765 170 13 1 2363 2531 476891753 476891584 4.210000e-58 235.0
10 TraesCS2A01G395100 chr4A 92.169 166 5 1 2366 2531 70863151 70862994 7.040000e-56 228.0
11 TraesCS2A01G395100 chr1B 90.361 166 16 0 2366 2531 522219938 522220103 4.240000e-53 219.0
12 TraesCS2A01G395100 chr4B 89.759 166 16 1 2366 2531 607111262 607111426 7.090000e-51 211.0
13 TraesCS2A01G395100 chr6A 85.714 182 12 2 2009 2177 528356134 528355954 2.000000e-41 180.0
14 TraesCS2A01G395100 chr6A 85.475 179 13 2 2009 2174 455699116 455699294 9.310000e-40 174.0
15 TraesCS2A01G395100 chr6A 83.516 182 16 2 2009 2177 528578633 528578453 9.370000e-35 158.0
16 TraesCS2A01G395100 chrUn 85.629 167 22 2 2366 2530 264662742 264662908 9.310000e-40 174.0
17 TraesCS2A01G395100 chrUn 85.629 167 22 2 2366 2530 303334383 303334549 9.310000e-40 174.0
18 TraesCS2A01G395100 chrUn 94.231 52 3 0 2123 2174 126747895 126747844 2.090000e-11 80.5
19 TraesCS2A01G395100 chr5B 91.150 113 10 0 2016 2128 57921842 57921730 1.210000e-33 154.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G395100 chr2A 646844049 646846579 2530 False 4674 4674 100.000 1 2531 1 chr2A.!!$F1 2530
1 TraesCS2A01G395100 chr2D 500402331 500404325 1994 True 2206 2206 86.961 1 2008 1 chr2D.!!$R1 2007
2 TraesCS2A01G395100 chr2B 588927357 588929296 1939 False 2145 2145 86.722 1 2008 1 chr2B.!!$F1 2007

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
281 304 0.025001 CGTGGACGCTCGCAAATTAG 59.975 55.0 0.0 0.0 0.0 1.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2229 2340 0.039618 ATACCAGGCAACACCAAGGG 59.96 55.0 0.0 0.0 43.14 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 3.320626 GAAGCGAAACCGGTTAACTAGT 58.679 45.455 22.60 2.79 46.10 2.57
70 71 5.919272 ATATGATCACATGCAGTTCTTCG 57.081 39.130 0.00 0.00 37.87 3.79
71 72 3.317603 TGATCACATGCAGTTCTTCGA 57.682 42.857 0.00 0.00 0.00 3.71
81 83 1.806542 CAGTTCTTCGACATGGTTGGG 59.193 52.381 0.00 0.00 0.00 4.12
82 84 1.165270 GTTCTTCGACATGGTTGGGG 58.835 55.000 0.00 0.00 0.00 4.96
191 193 9.262358 AGTATAGATTAAGATTCAACGCTTTCC 57.738 33.333 0.00 0.00 0.00 3.13
192 194 5.819825 AGATTAAGATTCAACGCTTTCCC 57.180 39.130 0.00 0.00 0.00 3.97
193 195 4.640647 AGATTAAGATTCAACGCTTTCCCC 59.359 41.667 0.00 0.00 0.00 4.81
194 196 1.545841 AAGATTCAACGCTTTCCCCC 58.454 50.000 0.00 0.00 0.00 5.40
195 197 0.676782 AGATTCAACGCTTTCCCCCG 60.677 55.000 0.00 0.00 0.00 5.73
196 198 2.266376 GATTCAACGCTTTCCCCCGC 62.266 60.000 0.00 0.00 0.00 6.13
197 199 3.776347 TTCAACGCTTTCCCCCGCA 62.776 57.895 0.00 0.00 0.00 5.69
198 200 3.291383 CAACGCTTTCCCCCGCAA 61.291 61.111 0.00 0.00 0.00 4.85
199 201 2.519780 AACGCTTTCCCCCGCAAA 60.520 55.556 0.00 0.00 0.00 3.68
200 202 2.128507 AACGCTTTCCCCCGCAAAA 61.129 52.632 0.00 0.00 0.00 2.44
201 203 1.677637 AACGCTTTCCCCCGCAAAAA 61.678 50.000 0.00 0.00 0.00 1.94
281 304 0.025001 CGTGGACGCTCGCAAATTAG 59.975 55.000 0.00 0.00 0.00 1.73
296 319 4.972440 GCAAATTAGATAAGCTGCCGAAAG 59.028 41.667 0.00 0.00 0.00 2.62
306 329 2.227388 AGCTGCCGAAAGATGTGAAAAG 59.773 45.455 0.00 0.00 0.00 2.27
338 361 1.216710 GGAGTCCCTGACGAAGCTG 59.783 63.158 0.00 0.00 37.67 4.24
345 374 0.531532 CCTGACGAAGCTGGCCTATG 60.532 60.000 3.32 0.00 0.00 2.23
347 376 0.975556 TGACGAAGCTGGCCTATGGA 60.976 55.000 3.32 0.00 0.00 3.41
348 377 0.249657 GACGAAGCTGGCCTATGGAG 60.250 60.000 3.32 0.00 0.00 3.86
349 378 0.978146 ACGAAGCTGGCCTATGGAGT 60.978 55.000 3.32 0.00 0.00 3.85
350 379 1.040646 CGAAGCTGGCCTATGGAGTA 58.959 55.000 3.32 0.00 0.00 2.59
351 380 1.620819 CGAAGCTGGCCTATGGAGTAT 59.379 52.381 3.32 0.00 0.00 2.12
352 381 2.611473 CGAAGCTGGCCTATGGAGTATG 60.611 54.545 3.32 0.00 0.00 2.39
353 382 1.356124 AGCTGGCCTATGGAGTATGG 58.644 55.000 3.32 0.00 0.00 2.74
354 383 1.059913 GCTGGCCTATGGAGTATGGT 58.940 55.000 3.32 0.00 0.00 3.55
356 385 1.273606 CTGGCCTATGGAGTATGGTCG 59.726 57.143 3.32 0.00 0.00 4.79
358 387 1.000955 GGCCTATGGAGTATGGTCGTG 59.999 57.143 0.00 0.00 0.00 4.35
359 388 1.000955 GCCTATGGAGTATGGTCGTGG 59.999 57.143 0.00 0.00 0.00 4.94
360 389 2.317040 CCTATGGAGTATGGTCGTGGT 58.683 52.381 0.00 0.00 0.00 4.16
361 390 3.493334 CCTATGGAGTATGGTCGTGGTA 58.507 50.000 0.00 0.00 0.00 3.25
362 391 4.087182 CCTATGGAGTATGGTCGTGGTAT 58.913 47.826 0.00 0.00 0.00 2.73
363 392 5.258841 CCTATGGAGTATGGTCGTGGTATA 58.741 45.833 0.00 0.00 0.00 1.47
364 393 5.125097 CCTATGGAGTATGGTCGTGGTATAC 59.875 48.000 0.00 0.00 0.00 1.47
369 398 2.148916 ATGGTCGTGGTATACATGCG 57.851 50.000 5.01 5.98 36.01 4.73
430 459 2.900122 CACGACATGCCAAACCTAAG 57.100 50.000 0.00 0.00 0.00 2.18
454 483 4.183865 TCGGATCATGCTAAACTTGTGAG 58.816 43.478 0.00 0.00 0.00 3.51
493 534 1.395826 TTTGCCCCAACCGGAAACAG 61.396 55.000 9.46 0.00 0.00 3.16
521 563 0.555769 TCCAGCCACCTGTTTCCTTT 59.444 50.000 0.00 0.00 37.38 3.11
534 576 5.467035 TGTTTCCTTTCACCAAATCATCC 57.533 39.130 0.00 0.00 0.00 3.51
557 599 3.097728 GCACGTGTCCAGACGACG 61.098 66.667 18.38 16.02 45.23 5.12
558 600 2.428569 CACGTGTCCAGACGACGG 60.429 66.667 7.58 10.01 45.23 4.79
559 601 2.592574 ACGTGTCCAGACGACGGA 60.593 61.111 19.42 0.00 45.23 4.69
568 610 1.529948 AGACGACGGAACACCCTCA 60.530 57.895 0.00 0.00 0.00 3.86
582 624 1.369091 CCCTCAAATCCTGTTCGCGG 61.369 60.000 6.13 0.00 0.00 6.46
613 657 2.643551 GAGAGAGAGAGGACAGTGGAG 58.356 57.143 0.00 0.00 0.00 3.86
654 698 1.301716 ACCACACTGATGGACACGC 60.302 57.895 9.23 0.00 43.02 5.34
682 726 2.081425 GAGCCCGCGACATGAGAGAT 62.081 60.000 8.23 0.00 0.00 2.75
683 727 1.953138 GCCCGCGACATGAGAGATG 60.953 63.158 8.23 0.00 0.00 2.90
684 728 1.735973 CCCGCGACATGAGAGATGA 59.264 57.895 8.23 0.00 0.00 2.92
685 729 0.318529 CCCGCGACATGAGAGATGAG 60.319 60.000 8.23 0.00 0.00 2.90
686 730 0.665298 CCGCGACATGAGAGATGAGA 59.335 55.000 8.23 0.00 0.00 3.27
687 731 1.334870 CCGCGACATGAGAGATGAGAG 60.335 57.143 8.23 0.00 0.00 3.20
688 732 1.769733 GCGACATGAGAGATGAGAGC 58.230 55.000 0.00 0.00 0.00 4.09
689 733 1.602668 GCGACATGAGAGATGAGAGCC 60.603 57.143 0.00 0.00 0.00 4.70
690 734 1.334870 CGACATGAGAGATGAGAGCCG 60.335 57.143 0.00 0.00 0.00 5.52
691 735 1.000385 GACATGAGAGATGAGAGCCGG 60.000 57.143 0.00 0.00 0.00 6.13
781 825 0.683179 CCCTTTCCGGTCCATTTCCC 60.683 60.000 0.00 0.00 0.00 3.97
800 844 4.368543 GACCCCGGTCGACACCAC 62.369 72.222 18.91 0.00 44.02 4.16
844 898 2.804697 TAAAACAAGCCGCTTTTCCC 57.195 45.000 1.86 0.00 0.00 3.97
845 899 1.119684 AAAACAAGCCGCTTTTCCCT 58.880 45.000 1.86 0.00 0.00 4.20
846 900 1.119684 AAACAAGCCGCTTTTCCCTT 58.880 45.000 1.86 0.00 0.00 3.95
847 901 0.673985 AACAAGCCGCTTTTCCCTTC 59.326 50.000 1.86 0.00 0.00 3.46
861 923 4.650754 TTCCCTTCTCTTCAGCGTATAC 57.349 45.455 0.00 0.00 0.00 1.47
905 967 0.954452 CGTTTTGCCTTCTGAAGCCT 59.046 50.000 11.93 0.00 0.00 4.58
906 968 1.338020 CGTTTTGCCTTCTGAAGCCTT 59.662 47.619 11.93 0.00 0.00 4.35
907 969 2.605580 CGTTTTGCCTTCTGAAGCCTTC 60.606 50.000 11.93 0.00 0.00 3.46
908 970 2.625314 GTTTTGCCTTCTGAAGCCTTCT 59.375 45.455 11.93 0.00 0.00 2.85
909 971 1.901591 TTGCCTTCTGAAGCCTTCTG 58.098 50.000 11.93 5.48 0.00 3.02
910 972 1.059098 TGCCTTCTGAAGCCTTCTGA 58.941 50.000 11.93 9.68 36.09 3.27
911 973 1.421268 TGCCTTCTGAAGCCTTCTGAA 59.579 47.619 21.01 21.01 42.76 3.02
914 976 2.191128 TTCTGAAGCCTTCTGAAGCC 57.809 50.000 19.18 0.53 40.98 4.35
915 977 0.036952 TCTGAAGCCTTCTGAAGCCG 60.037 55.000 11.14 0.83 35.14 5.52
916 978 0.036952 CTGAAGCCTTCTGAAGCCGA 60.037 55.000 11.93 0.00 0.00 5.54
917 979 0.036952 TGAAGCCTTCTGAAGCCGAG 60.037 55.000 11.93 0.00 0.00 4.63
922 984 1.807573 CTTCTGAAGCCGAGACGCC 60.808 63.158 4.20 0.00 0.00 5.68
923 985 2.492449 CTTCTGAAGCCGAGACGCCA 62.492 60.000 4.20 0.00 0.00 5.69
924 986 2.765250 TTCTGAAGCCGAGACGCCAC 62.765 60.000 0.00 0.00 0.00 5.01
926 988 4.070552 GAAGCCGAGACGCCACCT 62.071 66.667 0.00 0.00 0.00 4.00
927 989 4.379243 AAGCCGAGACGCCACCTG 62.379 66.667 0.00 0.00 0.00 4.00
1066 1152 3.047877 CCGCCGTGTTCAGGTTCC 61.048 66.667 0.00 0.00 0.00 3.62
1302 1400 4.477975 GGTCGCCACGAGGACGAG 62.478 72.222 15.84 0.00 41.64 4.18
1308 1406 3.503749 CACGAGGACGAGGAGGAG 58.496 66.667 0.00 0.00 42.66 3.69
1310 1408 2.299429 ACGAGGACGAGGAGGAGGA 61.299 63.158 0.00 0.00 42.66 3.71
1311 1409 1.820481 CGAGGACGAGGAGGAGGAC 60.820 68.421 0.00 0.00 42.66 3.85
1312 1410 1.820481 GAGGACGAGGAGGAGGACG 60.820 68.421 0.00 0.00 0.00 4.79
1313 1411 2.254737 GAGGACGAGGAGGAGGACGA 62.255 65.000 0.00 0.00 0.00 4.20
1314 1412 2.114051 GGACGAGGAGGAGGACGAC 61.114 68.421 0.00 0.00 0.00 4.34
1315 1413 2.436292 ACGAGGAGGAGGACGACG 60.436 66.667 0.00 0.00 0.00 5.12
1316 1414 3.203412 CGAGGAGGAGGACGACGG 61.203 72.222 0.00 0.00 0.00 4.79
1317 1415 3.519930 GAGGAGGAGGACGACGGC 61.520 72.222 0.00 0.00 0.00 5.68
1537 1635 0.246635 GTTCAGCGGCTAGTTCTCCA 59.753 55.000 0.26 0.00 0.00 3.86
1574 1672 2.407090 GGGCACTTTTGTCATTTCAGC 58.593 47.619 0.00 0.00 0.00 4.26
1575 1673 2.053627 GGCACTTTTGTCATTTCAGCG 58.946 47.619 0.00 0.00 0.00 5.18
1667 1771 3.924238 GTGCTAATCAATGGGCACG 57.076 52.632 0.00 0.00 43.91 5.34
1670 1774 0.248621 GCTAATCAATGGGCACGCAC 60.249 55.000 0.00 0.00 0.00 5.34
1675 1779 1.212490 CAATGGGCACGCACGAAAT 59.788 52.632 0.00 0.00 0.00 2.17
1677 1781 1.135546 CAATGGGCACGCACGAAATTA 60.136 47.619 0.00 0.00 0.00 1.40
1678 1782 1.388547 ATGGGCACGCACGAAATTAT 58.611 45.000 0.00 0.00 0.00 1.28
1707 1811 7.502120 CCAACTCCTGGTGAGAAAATATATG 57.498 40.000 2.23 0.00 44.42 1.78
1741 1846 2.481449 CCGTGTTTAGGGAAGAGATCGG 60.481 54.545 0.00 0.00 33.64 4.18
1760 1865 7.275183 AGATCGGATCAGTGATCACAATAAAA 58.725 34.615 29.56 7.77 42.72 1.52
1806 1911 2.872557 CTGGCAATGTGTCCTGCG 59.127 61.111 0.00 0.00 39.55 5.18
1807 1912 1.968017 CTGGCAATGTGTCCTGCGT 60.968 57.895 0.00 0.00 39.55 5.24
1818 1923 2.029073 CCTGCGTGTCCGTCAAGT 59.971 61.111 0.00 0.00 36.15 3.16
1819 1924 2.022129 CCTGCGTGTCCGTCAAGTC 61.022 63.158 0.00 0.00 36.15 3.01
1820 1925 2.022129 CTGCGTGTCCGTCAAGTCC 61.022 63.158 0.00 0.00 36.15 3.85
1821 1926 2.028484 GCGTGTCCGTCAAGTCCA 59.972 61.111 0.00 0.00 36.15 4.02
1822 1927 2.022129 GCGTGTCCGTCAAGTCCAG 61.022 63.158 0.00 0.00 36.15 3.86
1823 1928 1.362717 CGTGTCCGTCAAGTCCAGT 59.637 57.895 0.00 0.00 0.00 4.00
1824 1929 0.663568 CGTGTCCGTCAAGTCCAGTC 60.664 60.000 0.00 0.00 0.00 3.51
1825 1930 0.319641 GTGTCCGTCAAGTCCAGTCC 60.320 60.000 0.00 0.00 0.00 3.85
1826 1931 0.757561 TGTCCGTCAAGTCCAGTCCA 60.758 55.000 0.00 0.00 0.00 4.02
1827 1932 0.038159 GTCCGTCAAGTCCAGTCCAG 60.038 60.000 0.00 0.00 0.00 3.86
1904 2014 6.073494 TGTTGACACGTTGTTATCGATGATTT 60.073 34.615 8.54 0.00 0.00 2.17
1923 2033 8.601243 ATGATTTAATTTCTTAACGTTGCTCG 57.399 30.769 11.99 0.00 46.00 5.03
1965 2075 6.718388 TCGACGTGTAACTAATCATCGTTAT 58.282 36.000 0.00 0.00 31.75 1.89
1973 2084 5.135508 ACTAATCATCGTTATCTTCCCCG 57.864 43.478 0.00 0.00 0.00 5.73
2022 2133 6.843069 ATTCACAAACAAAAATGCTACACC 57.157 33.333 0.00 0.00 0.00 4.16
2023 2134 5.590530 TCACAAACAAAAATGCTACACCT 57.409 34.783 0.00 0.00 0.00 4.00
2024 2135 6.701145 TCACAAACAAAAATGCTACACCTA 57.299 33.333 0.00 0.00 0.00 3.08
2025 2136 6.500041 TCACAAACAAAAATGCTACACCTAC 58.500 36.000 0.00 0.00 0.00 3.18
2026 2137 5.398122 CACAAACAAAAATGCTACACCTACG 59.602 40.000 0.00 0.00 0.00 3.51
2027 2138 5.297278 ACAAACAAAAATGCTACACCTACGA 59.703 36.000 0.00 0.00 0.00 3.43
2028 2139 6.183360 ACAAACAAAAATGCTACACCTACGAA 60.183 34.615 0.00 0.00 0.00 3.85
2029 2140 5.607119 ACAAAAATGCTACACCTACGAAG 57.393 39.130 0.00 0.00 0.00 3.79
2030 2141 5.302360 ACAAAAATGCTACACCTACGAAGA 58.698 37.500 0.00 0.00 0.00 2.87
2031 2142 5.761234 ACAAAAATGCTACACCTACGAAGAA 59.239 36.000 0.00 0.00 0.00 2.52
2032 2143 6.261381 ACAAAAATGCTACACCTACGAAGAAA 59.739 34.615 0.00 0.00 0.00 2.52
2033 2144 6.870971 AAAATGCTACACCTACGAAGAAAA 57.129 33.333 0.00 0.00 0.00 2.29
2034 2145 5.857822 AATGCTACACCTACGAAGAAAAC 57.142 39.130 0.00 0.00 0.00 2.43
2035 2146 3.656559 TGCTACACCTACGAAGAAAACC 58.343 45.455 0.00 0.00 0.00 3.27
2036 2147 3.322828 TGCTACACCTACGAAGAAAACCT 59.677 43.478 0.00 0.00 0.00 3.50
2037 2148 4.523943 TGCTACACCTACGAAGAAAACCTA 59.476 41.667 0.00 0.00 0.00 3.08
2038 2149 4.861462 GCTACACCTACGAAGAAAACCTAC 59.139 45.833 0.00 0.00 0.00 3.18
2039 2150 4.942761 ACACCTACGAAGAAAACCTACA 57.057 40.909 0.00 0.00 0.00 2.74
2040 2151 5.280654 ACACCTACGAAGAAAACCTACAA 57.719 39.130 0.00 0.00 0.00 2.41
2041 2152 5.673514 ACACCTACGAAGAAAACCTACAAA 58.326 37.500 0.00 0.00 0.00 2.83
2042 2153 5.525012 ACACCTACGAAGAAAACCTACAAAC 59.475 40.000 0.00 0.00 0.00 2.93
2043 2154 5.756833 CACCTACGAAGAAAACCTACAAACT 59.243 40.000 0.00 0.00 0.00 2.66
2044 2155 5.987953 ACCTACGAAGAAAACCTACAAACTC 59.012 40.000 0.00 0.00 0.00 3.01
2045 2156 6.183360 ACCTACGAAGAAAACCTACAAACTCT 60.183 38.462 0.00 0.00 0.00 3.24
2046 2157 6.704937 CCTACGAAGAAAACCTACAAACTCTT 59.295 38.462 0.00 0.00 0.00 2.85
2047 2158 7.869429 CCTACGAAGAAAACCTACAAACTCTTA 59.131 37.037 0.00 0.00 0.00 2.10
2048 2159 9.420551 CTACGAAGAAAACCTACAAACTCTTAT 57.579 33.333 0.00 0.00 0.00 1.73
2049 2160 8.084590 ACGAAGAAAACCTACAAACTCTTATG 57.915 34.615 0.00 0.00 0.00 1.90
2050 2161 7.713942 ACGAAGAAAACCTACAAACTCTTATGT 59.286 33.333 0.00 0.00 0.00 2.29
2051 2162 9.199982 CGAAGAAAACCTACAAACTCTTATGTA 57.800 33.333 0.00 0.00 0.00 2.29
2076 2187 8.834749 AAATTTCCTAACTATAATCTCTCCGC 57.165 34.615 0.00 0.00 0.00 5.54
2077 2188 5.979288 TTCCTAACTATAATCTCTCCGCC 57.021 43.478 0.00 0.00 0.00 6.13
2078 2189 4.342359 TCCTAACTATAATCTCTCCGCCC 58.658 47.826 0.00 0.00 0.00 6.13
2079 2190 3.447944 CCTAACTATAATCTCTCCGCCCC 59.552 52.174 0.00 0.00 0.00 5.80
2080 2191 1.939980 ACTATAATCTCTCCGCCCCC 58.060 55.000 0.00 0.00 0.00 5.40
2081 2192 1.433592 ACTATAATCTCTCCGCCCCCT 59.566 52.381 0.00 0.00 0.00 4.79
2082 2193 1.827969 CTATAATCTCTCCGCCCCCTG 59.172 57.143 0.00 0.00 0.00 4.45
2083 2194 0.191064 ATAATCTCTCCGCCCCCTGA 59.809 55.000 0.00 0.00 0.00 3.86
2084 2195 0.191064 TAATCTCTCCGCCCCCTGAT 59.809 55.000 0.00 0.00 0.00 2.90
2085 2196 0.695803 AATCTCTCCGCCCCCTGATT 60.696 55.000 0.00 0.00 0.00 2.57
2086 2197 0.695803 ATCTCTCCGCCCCCTGATTT 60.696 55.000 0.00 0.00 0.00 2.17
2087 2198 1.147153 CTCTCCGCCCCCTGATTTC 59.853 63.158 0.00 0.00 0.00 2.17
2088 2199 1.615124 TCTCCGCCCCCTGATTTCA 60.615 57.895 0.00 0.00 0.00 2.69
2089 2200 1.204786 TCTCCGCCCCCTGATTTCAA 61.205 55.000 0.00 0.00 0.00 2.69
2090 2201 1.001393 TCCGCCCCCTGATTTCAAC 60.001 57.895 0.00 0.00 0.00 3.18
2091 2202 1.000896 CCGCCCCCTGATTTCAACT 60.001 57.895 0.00 0.00 0.00 3.16
2092 2203 1.315257 CCGCCCCCTGATTTCAACTG 61.315 60.000 0.00 0.00 0.00 3.16
2093 2204 1.315257 CGCCCCCTGATTTCAACTGG 61.315 60.000 0.00 0.00 0.00 4.00
2094 2205 0.972471 GCCCCCTGATTTCAACTGGG 60.972 60.000 0.00 0.00 43.23 4.45
2095 2206 0.409484 CCCCCTGATTTCAACTGGGT 59.591 55.000 0.00 0.00 42.45 4.51
2096 2207 1.549203 CCCCTGATTTCAACTGGGTG 58.451 55.000 0.00 0.00 42.45 4.61
2097 2208 1.549203 CCCTGATTTCAACTGGGTGG 58.451 55.000 0.00 0.00 40.22 4.61
2098 2209 1.549203 CCTGATTTCAACTGGGTGGG 58.451 55.000 0.00 0.00 0.00 4.61
2099 2210 1.203050 CCTGATTTCAACTGGGTGGGT 60.203 52.381 0.00 0.00 0.00 4.51
2100 2211 2.162681 CTGATTTCAACTGGGTGGGTC 58.837 52.381 0.00 0.00 0.00 4.46
2101 2212 1.203001 TGATTTCAACTGGGTGGGTCC 60.203 52.381 0.00 0.00 0.00 4.46
2114 2225 4.199287 GGTCCCCACCCCCTTATT 57.801 61.111 0.00 0.00 36.54 1.40
2115 2226 2.416787 GGTCCCCACCCCCTTATTT 58.583 57.895 0.00 0.00 36.54 1.40
2116 2227 0.260816 GGTCCCCACCCCCTTATTTC 59.739 60.000 0.00 0.00 36.54 2.17
2117 2228 1.305886 GTCCCCACCCCCTTATTTCT 58.694 55.000 0.00 0.00 0.00 2.52
2118 2229 1.644337 GTCCCCACCCCCTTATTTCTT 59.356 52.381 0.00 0.00 0.00 2.52
2119 2230 2.043939 GTCCCCACCCCCTTATTTCTTT 59.956 50.000 0.00 0.00 0.00 2.52
2120 2231 2.313643 TCCCCACCCCCTTATTTCTTTC 59.686 50.000 0.00 0.00 0.00 2.62
2121 2232 2.043801 CCCCACCCCCTTATTTCTTTCA 59.956 50.000 0.00 0.00 0.00 2.69
2122 2233 3.503227 CCCCACCCCCTTATTTCTTTCAA 60.503 47.826 0.00 0.00 0.00 2.69
2123 2234 3.513912 CCCACCCCCTTATTTCTTTCAAC 59.486 47.826 0.00 0.00 0.00 3.18
2124 2235 3.513912 CCACCCCCTTATTTCTTTCAACC 59.486 47.826 0.00 0.00 0.00 3.77
2125 2236 3.192633 CACCCCCTTATTTCTTTCAACCG 59.807 47.826 0.00 0.00 0.00 4.44
2126 2237 3.074836 ACCCCCTTATTTCTTTCAACCGA 59.925 43.478 0.00 0.00 0.00 4.69
2127 2238 4.083565 CCCCCTTATTTCTTTCAACCGAA 58.916 43.478 0.00 0.00 0.00 4.30
2128 2239 4.157840 CCCCCTTATTTCTTTCAACCGAAG 59.842 45.833 0.00 0.00 31.28 3.79
2129 2240 4.380550 CCCCTTATTTCTTTCAACCGAAGC 60.381 45.833 0.00 0.00 31.28 3.86
2130 2241 4.380550 CCCTTATTTCTTTCAACCGAAGCC 60.381 45.833 0.00 0.00 31.28 4.35
2131 2242 4.459337 CCTTATTTCTTTCAACCGAAGCCT 59.541 41.667 0.00 0.00 31.28 4.58
2132 2243 5.048013 CCTTATTTCTTTCAACCGAAGCCTT 60.048 40.000 0.00 0.00 31.28 4.35
2133 2244 4.937201 ATTTCTTTCAACCGAAGCCTTT 57.063 36.364 0.00 0.00 31.28 3.11
2134 2245 7.308951 CCTTATTTCTTTCAACCGAAGCCTTTA 60.309 37.037 0.00 0.00 31.28 1.85
2135 2246 4.823790 TTCTTTCAACCGAAGCCTTTAC 57.176 40.909 0.00 0.00 31.28 2.01
2136 2247 3.811083 TCTTTCAACCGAAGCCTTTACA 58.189 40.909 0.00 0.00 31.28 2.41
2137 2248 4.394729 TCTTTCAACCGAAGCCTTTACAT 58.605 39.130 0.00 0.00 31.28 2.29
2138 2249 5.553123 TCTTTCAACCGAAGCCTTTACATA 58.447 37.500 0.00 0.00 31.28 2.29
2139 2250 5.998981 TCTTTCAACCGAAGCCTTTACATAA 59.001 36.000 0.00 0.00 31.28 1.90
2140 2251 5.873179 TTCAACCGAAGCCTTTACATAAG 57.127 39.130 0.00 0.00 0.00 1.73
2141 2252 4.901868 TCAACCGAAGCCTTTACATAAGT 58.098 39.130 0.00 0.00 0.00 2.24
2142 2253 5.310451 TCAACCGAAGCCTTTACATAAGTT 58.690 37.500 0.00 0.00 0.00 2.66
2143 2254 6.465948 TCAACCGAAGCCTTTACATAAGTTA 58.534 36.000 0.00 0.00 0.00 2.24
2144 2255 6.369615 TCAACCGAAGCCTTTACATAAGTTAC 59.630 38.462 0.00 0.00 0.00 2.50
2145 2256 4.866486 ACCGAAGCCTTTACATAAGTTACG 59.134 41.667 0.00 0.00 0.00 3.18
2146 2257 4.866486 CCGAAGCCTTTACATAAGTTACGT 59.134 41.667 0.00 0.00 0.00 3.57
2147 2258 6.035843 CCGAAGCCTTTACATAAGTTACGTA 58.964 40.000 0.00 0.00 0.00 3.57
2148 2259 6.698766 CCGAAGCCTTTACATAAGTTACGTAT 59.301 38.462 0.00 0.00 0.00 3.06
2149 2260 7.306399 CCGAAGCCTTTACATAAGTTACGTATG 60.306 40.741 14.84 14.84 35.47 2.39
2150 2261 7.433131 CGAAGCCTTTACATAAGTTACGTATGA 59.567 37.037 21.38 6.00 33.86 2.15
2151 2262 9.090692 GAAGCCTTTACATAAGTTACGTATGAA 57.909 33.333 21.38 10.61 33.86 2.57
2152 2263 9.609346 AAGCCTTTACATAAGTTACGTATGAAT 57.391 29.630 21.38 6.10 33.86 2.57
2153 2264 9.257651 AGCCTTTACATAAGTTACGTATGAATC 57.742 33.333 21.38 7.20 33.86 2.52
2154 2265 9.037737 GCCTTTACATAAGTTACGTATGAATCA 57.962 33.333 21.38 4.61 33.86 2.57
2159 2270 8.778141 ACATAAGTTACGTATGAATCAGTACG 57.222 34.615 21.38 17.24 46.59 3.67
2166 2277 5.670149 CGTATGAATCAGTACGTAGGTCT 57.330 43.478 13.26 0.00 38.96 3.85
2167 2278 6.775939 CGTATGAATCAGTACGTAGGTCTA 57.224 41.667 13.26 0.00 38.96 2.59
2168 2279 6.819437 CGTATGAATCAGTACGTAGGTCTAG 58.181 44.000 13.26 0.00 38.96 2.43
2169 2280 5.692613 ATGAATCAGTACGTAGGTCTAGC 57.307 43.478 0.00 0.00 0.00 3.42
2170 2281 4.520179 TGAATCAGTACGTAGGTCTAGCA 58.480 43.478 0.00 0.00 0.00 3.49
2171 2282 5.131067 TGAATCAGTACGTAGGTCTAGCAT 58.869 41.667 0.00 0.00 0.00 3.79
2172 2283 5.593095 TGAATCAGTACGTAGGTCTAGCATT 59.407 40.000 0.00 0.00 0.00 3.56
2173 2284 4.895224 TCAGTACGTAGGTCTAGCATTG 57.105 45.455 0.00 0.00 0.00 2.82
2174 2285 4.267536 TCAGTACGTAGGTCTAGCATTGT 58.732 43.478 0.00 0.00 0.00 2.71
2175 2286 4.703575 TCAGTACGTAGGTCTAGCATTGTT 59.296 41.667 0.00 0.00 0.00 2.83
2176 2287 4.798907 CAGTACGTAGGTCTAGCATTGTTG 59.201 45.833 0.00 0.00 0.00 3.33
2177 2288 4.703575 AGTACGTAGGTCTAGCATTGTTGA 59.296 41.667 0.00 0.00 0.00 3.18
2178 2289 4.737855 ACGTAGGTCTAGCATTGTTGAT 57.262 40.909 0.00 0.00 0.00 2.57
2179 2290 5.086104 ACGTAGGTCTAGCATTGTTGATT 57.914 39.130 0.00 0.00 0.00 2.57
2180 2291 5.109903 ACGTAGGTCTAGCATTGTTGATTC 58.890 41.667 0.00 0.00 0.00 2.52
2181 2292 5.109210 CGTAGGTCTAGCATTGTTGATTCA 58.891 41.667 0.00 0.00 0.00 2.57
2182 2293 5.005779 CGTAGGTCTAGCATTGTTGATTCAC 59.994 44.000 0.00 0.00 0.00 3.18
2183 2294 3.935203 AGGTCTAGCATTGTTGATTCACG 59.065 43.478 0.00 0.00 0.00 4.35
2184 2295 3.932710 GGTCTAGCATTGTTGATTCACGA 59.067 43.478 0.00 0.00 0.00 4.35
2185 2296 4.391830 GGTCTAGCATTGTTGATTCACGAA 59.608 41.667 0.00 0.00 0.00 3.85
2186 2297 5.065218 GGTCTAGCATTGTTGATTCACGAAT 59.935 40.000 0.00 0.00 0.00 3.34
2187 2298 6.257849 GGTCTAGCATTGTTGATTCACGAATA 59.742 38.462 0.00 0.00 0.00 1.75
2188 2299 7.041780 GGTCTAGCATTGTTGATTCACGAATAT 60.042 37.037 0.00 0.00 0.00 1.28
2189 2300 8.978539 GTCTAGCATTGTTGATTCACGAATATA 58.021 33.333 0.00 0.00 0.00 0.86
2190 2301 9.196552 TCTAGCATTGTTGATTCACGAATATAG 57.803 33.333 0.00 0.00 0.00 1.31
2191 2302 7.194607 AGCATTGTTGATTCACGAATATAGG 57.805 36.000 0.00 0.00 0.00 2.57
2192 2303 6.205464 AGCATTGTTGATTCACGAATATAGGG 59.795 38.462 0.00 0.00 0.00 3.53
2193 2304 6.373779 CATTGTTGATTCACGAATATAGGGC 58.626 40.000 0.00 0.00 0.00 5.19
2194 2305 4.055360 TGTTGATTCACGAATATAGGGCG 58.945 43.478 0.00 0.00 0.00 6.13
2195 2306 4.056050 GTTGATTCACGAATATAGGGCGT 58.944 43.478 0.00 0.00 39.04 5.68
2196 2307 4.330944 TGATTCACGAATATAGGGCGTT 57.669 40.909 0.00 0.00 35.90 4.84
2197 2308 4.055360 TGATTCACGAATATAGGGCGTTG 58.945 43.478 0.00 0.00 35.90 4.10
2198 2309 1.860676 TCACGAATATAGGGCGTTGC 58.139 50.000 0.00 0.00 35.90 4.17
2208 2319 4.467084 GGCGTTGCCTGGATCGGA 62.467 66.667 0.00 0.00 46.69 4.55
2209 2320 2.203070 GCGTTGCCTGGATCGGAT 60.203 61.111 0.00 0.00 0.00 4.18
2210 2321 1.819632 GCGTTGCCTGGATCGGATT 60.820 57.895 0.00 0.00 0.00 3.01
2211 2322 1.376609 GCGTTGCCTGGATCGGATTT 61.377 55.000 0.00 0.00 0.00 2.17
2212 2323 0.378257 CGTTGCCTGGATCGGATTTG 59.622 55.000 0.00 0.00 0.00 2.32
2213 2324 1.463674 GTTGCCTGGATCGGATTTGT 58.536 50.000 0.00 0.00 0.00 2.83
2214 2325 2.639065 GTTGCCTGGATCGGATTTGTA 58.361 47.619 0.00 0.00 0.00 2.41
2215 2326 2.614057 GTTGCCTGGATCGGATTTGTAG 59.386 50.000 0.00 0.00 0.00 2.74
2216 2327 1.140852 TGCCTGGATCGGATTTGTAGG 59.859 52.381 0.00 0.00 0.00 3.18
2217 2328 1.884235 CCTGGATCGGATTTGTAGGC 58.116 55.000 0.00 0.00 0.00 3.93
2218 2329 1.417890 CCTGGATCGGATTTGTAGGCT 59.582 52.381 0.00 0.00 0.00 4.58
2219 2330 2.487934 CTGGATCGGATTTGTAGGCTG 58.512 52.381 0.00 0.00 0.00 4.85
2220 2331 1.140852 TGGATCGGATTTGTAGGCTGG 59.859 52.381 0.00 0.00 0.00 4.85
2221 2332 1.416401 GGATCGGATTTGTAGGCTGGA 59.584 52.381 0.00 0.00 0.00 3.86
2222 2333 2.039084 GGATCGGATTTGTAGGCTGGAT 59.961 50.000 0.00 0.00 0.00 3.41
2223 2334 2.910688 TCGGATTTGTAGGCTGGATC 57.089 50.000 0.00 0.00 0.00 3.36
2224 2335 1.068588 TCGGATTTGTAGGCTGGATCG 59.931 52.381 0.00 0.00 0.00 3.69
2225 2336 1.873903 CGGATTTGTAGGCTGGATCGG 60.874 57.143 0.00 0.00 0.00 4.18
2226 2337 1.230324 GATTTGTAGGCTGGATCGGC 58.770 55.000 0.00 1.31 34.56 5.54
2227 2338 0.532862 ATTTGTAGGCTGGATCGGCG 60.533 55.000 0.00 0.00 36.46 6.46
2228 2339 1.609635 TTTGTAGGCTGGATCGGCGA 61.610 55.000 13.87 13.87 36.46 5.54
2229 2340 2.027751 GTAGGCTGGATCGGCGAC 59.972 66.667 13.76 6.32 36.46 5.19
2230 2341 3.224324 TAGGCTGGATCGGCGACC 61.224 66.667 13.76 16.37 36.46 4.79
2233 2344 4.162690 GCTGGATCGGCGACCCTT 62.163 66.667 23.11 0.00 0.00 3.95
2234 2345 2.202932 CTGGATCGGCGACCCTTG 60.203 66.667 23.11 10.68 0.00 3.61
2235 2346 3.740128 CTGGATCGGCGACCCTTGG 62.740 68.421 23.11 7.96 0.00 3.61
2236 2347 3.782443 GGATCGGCGACCCTTGGT 61.782 66.667 14.58 0.00 39.44 3.67
2237 2348 2.511600 GATCGGCGACCCTTGGTG 60.512 66.667 13.76 0.00 35.25 4.17
2238 2349 3.310860 GATCGGCGACCCTTGGTGT 62.311 63.158 13.76 0.00 35.25 4.16
2239 2350 2.798148 GATCGGCGACCCTTGGTGTT 62.798 60.000 13.76 0.00 35.25 3.32
2240 2351 3.353836 CGGCGACCCTTGGTGTTG 61.354 66.667 0.00 0.00 35.25 3.33
2241 2352 3.670377 GGCGACCCTTGGTGTTGC 61.670 66.667 10.22 10.22 41.49 4.17
2242 2353 3.670377 GCGACCCTTGGTGTTGCC 61.670 66.667 8.42 0.00 37.18 4.52
2243 2354 2.113139 CGACCCTTGGTGTTGCCT 59.887 61.111 0.00 0.00 35.25 4.75
2244 2355 2.260869 CGACCCTTGGTGTTGCCTG 61.261 63.158 0.00 0.00 35.25 4.85
2245 2356 1.903404 GACCCTTGGTGTTGCCTGG 60.903 63.158 0.00 0.00 35.25 4.45
2246 2357 2.198426 CCCTTGGTGTTGCCTGGT 59.802 61.111 0.00 0.00 38.35 4.00
2247 2358 1.357272 ACCCTTGGTGTTGCCTGGTA 61.357 55.000 0.00 0.00 38.35 3.25
2248 2359 0.039618 CCCTTGGTGTTGCCTGGTAT 59.960 55.000 0.00 0.00 38.35 2.73
2249 2360 1.549950 CCCTTGGTGTTGCCTGGTATT 60.550 52.381 0.00 0.00 38.35 1.89
2250 2361 2.247358 CCTTGGTGTTGCCTGGTATTT 58.753 47.619 0.00 0.00 38.35 1.40
2251 2362 2.231235 CCTTGGTGTTGCCTGGTATTTC 59.769 50.000 0.00 0.00 38.35 2.17
2252 2363 2.969821 TGGTGTTGCCTGGTATTTCT 57.030 45.000 0.00 0.00 38.35 2.52
2253 2364 2.790433 TGGTGTTGCCTGGTATTTCTC 58.210 47.619 0.00 0.00 38.35 2.87
2254 2365 2.375174 TGGTGTTGCCTGGTATTTCTCT 59.625 45.455 0.00 0.00 38.35 3.10
2255 2366 3.181434 TGGTGTTGCCTGGTATTTCTCTT 60.181 43.478 0.00 0.00 38.35 2.85
2256 2367 3.826729 GGTGTTGCCTGGTATTTCTCTTT 59.173 43.478 0.00 0.00 0.00 2.52
2257 2368 4.280929 GGTGTTGCCTGGTATTTCTCTTTT 59.719 41.667 0.00 0.00 0.00 2.27
2258 2369 5.222631 GTGTTGCCTGGTATTTCTCTTTTG 58.777 41.667 0.00 0.00 0.00 2.44
2259 2370 4.237724 GTTGCCTGGTATTTCTCTTTTGC 58.762 43.478 0.00 0.00 0.00 3.68
2260 2371 3.495331 TGCCTGGTATTTCTCTTTTGCA 58.505 40.909 0.00 0.00 0.00 4.08
2261 2372 4.088634 TGCCTGGTATTTCTCTTTTGCAT 58.911 39.130 0.00 0.00 0.00 3.96
2262 2373 4.158394 TGCCTGGTATTTCTCTTTTGCATC 59.842 41.667 0.00 0.00 0.00 3.91
2263 2374 4.440663 GCCTGGTATTTCTCTTTTGCATCC 60.441 45.833 0.00 0.00 0.00 3.51
2264 2375 4.952335 CCTGGTATTTCTCTTTTGCATCCT 59.048 41.667 0.00 0.00 0.00 3.24
2265 2376 5.420104 CCTGGTATTTCTCTTTTGCATCCTT 59.580 40.000 0.00 0.00 0.00 3.36
2266 2377 6.405176 CCTGGTATTTCTCTTTTGCATCCTTC 60.405 42.308 0.00 0.00 0.00 3.46
2267 2378 6.009589 TGGTATTTCTCTTTTGCATCCTTCA 58.990 36.000 0.00 0.00 0.00 3.02
2268 2379 6.151648 TGGTATTTCTCTTTTGCATCCTTCAG 59.848 38.462 0.00 0.00 0.00 3.02
2269 2380 6.375455 GGTATTTCTCTTTTGCATCCTTCAGA 59.625 38.462 0.00 0.00 0.00 3.27
2270 2381 7.067981 GGTATTTCTCTTTTGCATCCTTCAGAT 59.932 37.037 0.00 0.00 34.66 2.90
2282 2393 6.462073 CATCCTTCAGATGCTTTTTGTTTG 57.538 37.500 0.00 0.00 45.76 2.93
2283 2394 4.947645 TCCTTCAGATGCTTTTTGTTTGG 58.052 39.130 0.00 0.00 0.00 3.28
2284 2395 4.405358 TCCTTCAGATGCTTTTTGTTTGGT 59.595 37.500 0.00 0.00 0.00 3.67
2285 2396 4.746611 CCTTCAGATGCTTTTTGTTTGGTC 59.253 41.667 0.00 0.00 0.00 4.02
2286 2397 4.320608 TCAGATGCTTTTTGTTTGGTCC 57.679 40.909 0.00 0.00 0.00 4.46
2287 2398 3.960102 TCAGATGCTTTTTGTTTGGTCCT 59.040 39.130 0.00 0.00 0.00 3.85
2288 2399 4.405358 TCAGATGCTTTTTGTTTGGTCCTT 59.595 37.500 0.00 0.00 0.00 3.36
2289 2400 5.104982 TCAGATGCTTTTTGTTTGGTCCTTT 60.105 36.000 0.00 0.00 0.00 3.11
2290 2401 5.585844 CAGATGCTTTTTGTTTGGTCCTTTT 59.414 36.000 0.00 0.00 0.00 2.27
2291 2402 6.093909 CAGATGCTTTTTGTTTGGTCCTTTTT 59.906 34.615 0.00 0.00 0.00 1.94
2292 2403 5.619625 TGCTTTTTGTTTGGTCCTTTTTG 57.380 34.783 0.00 0.00 0.00 2.44
2293 2404 5.066593 TGCTTTTTGTTTGGTCCTTTTTGT 58.933 33.333 0.00 0.00 0.00 2.83
2294 2405 5.532779 TGCTTTTTGTTTGGTCCTTTTTGTT 59.467 32.000 0.00 0.00 0.00 2.83
2295 2406 6.039829 TGCTTTTTGTTTGGTCCTTTTTGTTT 59.960 30.769 0.00 0.00 0.00 2.83
2296 2407 6.920758 GCTTTTTGTTTGGTCCTTTTTGTTTT 59.079 30.769 0.00 0.00 0.00 2.43
2297 2408 7.436673 GCTTTTTGTTTGGTCCTTTTTGTTTTT 59.563 29.630 0.00 0.00 0.00 1.94
2298 2409 8.858003 TTTTTGTTTGGTCCTTTTTGTTTTTC 57.142 26.923 0.00 0.00 0.00 2.29
2299 2410 7.809546 TTTGTTTGGTCCTTTTTGTTTTTCT 57.190 28.000 0.00 0.00 0.00 2.52
2300 2411 7.809546 TTGTTTGGTCCTTTTTGTTTTTCTT 57.190 28.000 0.00 0.00 0.00 2.52
2301 2412 7.809546 TGTTTGGTCCTTTTTGTTTTTCTTT 57.190 28.000 0.00 0.00 0.00 2.52
2302 2413 8.226819 TGTTTGGTCCTTTTTGTTTTTCTTTT 57.773 26.923 0.00 0.00 0.00 2.27
2303 2414 8.687242 TGTTTGGTCCTTTTTGTTTTTCTTTTT 58.313 25.926 0.00 0.00 0.00 1.94
2304 2415 9.176181 GTTTGGTCCTTTTTGTTTTTCTTTTTC 57.824 29.630 0.00 0.00 0.00 2.29
2305 2416 8.684386 TTGGTCCTTTTTGTTTTTCTTTTTCT 57.316 26.923 0.00 0.00 0.00 2.52
2306 2417 8.684386 TGGTCCTTTTTGTTTTTCTTTTTCTT 57.316 26.923 0.00 0.00 0.00 2.52
2307 2418 9.126151 TGGTCCTTTTTGTTTTTCTTTTTCTTT 57.874 25.926 0.00 0.00 0.00 2.52
2308 2419 9.959749 GGTCCTTTTTGTTTTTCTTTTTCTTTT 57.040 25.926 0.00 0.00 0.00 2.27
2310 2421 9.871299 TCCTTTTTGTTTTTCTTTTTCTTTTCG 57.129 25.926 0.00 0.00 0.00 3.46
2311 2422 9.658475 CCTTTTTGTTTTTCTTTTTCTTTTCGT 57.342 25.926 0.00 0.00 0.00 3.85
2322 2433 9.902196 TTCTTTTTCTTTTCGTAGTTTCTTTGT 57.098 25.926 0.00 0.00 0.00 2.83
2323 2434 9.902196 TCTTTTTCTTTTCGTAGTTTCTTTGTT 57.098 25.926 0.00 0.00 0.00 2.83
2326 2437 9.680315 TTTTCTTTTCGTAGTTTCTTTGTTTCA 57.320 25.926 0.00 0.00 0.00 2.69
2327 2438 9.680315 TTTCTTTTCGTAGTTTCTTTGTTTCAA 57.320 25.926 0.00 0.00 0.00 2.69
2328 2439 9.849166 TTCTTTTCGTAGTTTCTTTGTTTCAAT 57.151 25.926 0.00 0.00 0.00 2.57
2329 2440 9.849166 TCTTTTCGTAGTTTCTTTGTTTCAATT 57.151 25.926 0.00 0.00 0.00 2.32
2333 2444 9.849166 TTCGTAGTTTCTTTGTTTCAATTTTCT 57.151 25.926 0.00 0.00 0.00 2.52
2334 2445 9.849166 TCGTAGTTTCTTTGTTTCAATTTTCTT 57.151 25.926 0.00 0.00 0.00 2.52
2341 2452 8.477984 TCTTTGTTTCAATTTTCTTTGTCTGG 57.522 30.769 0.00 0.00 0.00 3.86
2342 2453 8.310382 TCTTTGTTTCAATTTTCTTTGTCTGGA 58.690 29.630 0.00 0.00 0.00 3.86
2343 2454 7.826260 TTGTTTCAATTTTCTTTGTCTGGAC 57.174 32.000 0.00 0.00 0.00 4.02
2344 2455 6.929625 TGTTTCAATTTTCTTTGTCTGGACA 58.070 32.000 0.00 0.00 39.98 4.02
2354 2465 2.455674 TGTCTGGACAATCTGTTCCG 57.544 50.000 0.51 0.00 38.56 4.30
2355 2466 1.691976 TGTCTGGACAATCTGTTCCGT 59.308 47.619 0.51 0.00 38.56 4.69
2356 2467 2.104111 TGTCTGGACAATCTGTTCCGTT 59.896 45.455 0.51 0.00 38.56 4.44
2357 2468 3.322541 TGTCTGGACAATCTGTTCCGTTA 59.677 43.478 0.51 0.00 38.56 3.18
2358 2469 4.020573 TGTCTGGACAATCTGTTCCGTTAT 60.021 41.667 0.51 0.00 38.56 1.89
2359 2470 4.330074 GTCTGGACAATCTGTTCCGTTATG 59.670 45.833 0.00 0.00 0.00 1.90
2360 2471 4.221924 TCTGGACAATCTGTTCCGTTATGA 59.778 41.667 0.00 0.00 0.00 2.15
2361 2472 4.250464 TGGACAATCTGTTCCGTTATGAC 58.750 43.478 0.00 0.00 0.00 3.06
2362 2473 4.020573 TGGACAATCTGTTCCGTTATGACT 60.021 41.667 0.00 0.00 0.00 3.41
2363 2474 4.330074 GGACAATCTGTTCCGTTATGACTG 59.670 45.833 0.00 0.00 0.00 3.51
2364 2475 4.894784 ACAATCTGTTCCGTTATGACTGT 58.105 39.130 0.00 0.00 0.00 3.55
2365 2476 6.032956 ACAATCTGTTCCGTTATGACTGTA 57.967 37.500 0.00 0.00 0.00 2.74
2366 2477 6.460781 ACAATCTGTTCCGTTATGACTGTAA 58.539 36.000 0.00 0.00 0.00 2.41
2367 2478 6.367969 ACAATCTGTTCCGTTATGACTGTAAC 59.632 38.462 0.00 0.00 0.00 2.50
2368 2479 5.717078 TCTGTTCCGTTATGACTGTAACT 57.283 39.130 0.00 0.00 33.44 2.24
2369 2480 6.822667 TCTGTTCCGTTATGACTGTAACTA 57.177 37.500 0.00 0.00 33.44 2.24
2370 2481 6.849502 TCTGTTCCGTTATGACTGTAACTAG 58.150 40.000 0.00 0.00 33.44 2.57
2371 2482 6.656270 TCTGTTCCGTTATGACTGTAACTAGA 59.344 38.462 0.00 0.00 33.44 2.43
2372 2483 7.338703 TCTGTTCCGTTATGACTGTAACTAGAT 59.661 37.037 0.00 0.00 33.44 1.98
2373 2484 7.478322 TGTTCCGTTATGACTGTAACTAGATC 58.522 38.462 0.00 0.00 33.44 2.75
2374 2485 7.121611 TGTTCCGTTATGACTGTAACTAGATCA 59.878 37.037 0.00 0.00 33.44 2.92
2375 2486 7.818997 TCCGTTATGACTGTAACTAGATCAT 57.181 36.000 0.00 0.00 33.44 2.45
2376 2487 7.649057 TCCGTTATGACTGTAACTAGATCATG 58.351 38.462 0.00 0.00 33.44 3.07
2377 2488 7.501225 TCCGTTATGACTGTAACTAGATCATGA 59.499 37.037 0.00 0.00 33.44 3.07
2378 2489 8.300286 CCGTTATGACTGTAACTAGATCATGAT 58.700 37.037 8.25 8.25 33.44 2.45
2379 2490 9.684448 CGTTATGACTGTAACTAGATCATGATT 57.316 33.333 10.14 2.85 33.44 2.57
2381 2492 9.987272 TTATGACTGTAACTAGATCATGATTGG 57.013 33.333 10.14 5.88 32.42 3.16
2382 2493 6.283694 TGACTGTAACTAGATCATGATTGGC 58.716 40.000 10.14 0.00 0.00 4.52
2383 2494 5.292765 ACTGTAACTAGATCATGATTGGCG 58.707 41.667 10.14 2.02 0.00 5.69
2384 2495 4.058124 TGTAACTAGATCATGATTGGCGC 58.942 43.478 10.14 0.00 0.00 6.53
2385 2496 1.788258 ACTAGATCATGATTGGCGCG 58.212 50.000 10.14 0.00 0.00 6.86
2386 2497 0.441533 CTAGATCATGATTGGCGCGC 59.558 55.000 25.94 25.94 0.00 6.86
2387 2498 1.284297 TAGATCATGATTGGCGCGCG 61.284 55.000 28.44 28.44 0.00 6.86
2388 2499 2.885676 GATCATGATTGGCGCGCGT 61.886 57.895 32.35 11.76 0.00 6.01
2389 2500 2.378945 GATCATGATTGGCGCGCGTT 62.379 55.000 32.35 12.29 0.00 4.84
2390 2501 2.651367 ATCATGATTGGCGCGCGTTG 62.651 55.000 32.35 15.09 0.00 4.10
2391 2502 4.834892 ATGATTGGCGCGCGTTGC 62.835 61.111 32.35 14.96 41.47 4.17
2405 2516 4.314440 TTGCTGCGCCCGTCTCTT 62.314 61.111 4.18 0.00 0.00 2.85
2406 2517 3.825160 TTGCTGCGCCCGTCTCTTT 62.825 57.895 4.18 0.00 0.00 2.52
2407 2518 3.050275 GCTGCGCCCGTCTCTTTT 61.050 61.111 4.18 0.00 0.00 2.27
2408 2519 2.617274 GCTGCGCCCGTCTCTTTTT 61.617 57.895 4.18 0.00 0.00 1.94
2430 2541 6.677781 TTTCGATGAACCAATATGAGTTCC 57.322 37.500 13.01 1.94 41.36 3.62
2431 2542 4.703897 TCGATGAACCAATATGAGTTCCC 58.296 43.478 13.01 6.61 41.36 3.97
2432 2543 4.163268 TCGATGAACCAATATGAGTTCCCA 59.837 41.667 13.01 0.81 41.36 4.37
2433 2544 5.065914 CGATGAACCAATATGAGTTCCCAT 58.934 41.667 13.01 4.64 41.36 4.00
2434 2545 6.042666 TCGATGAACCAATATGAGTTCCCATA 59.957 38.462 13.01 0.00 41.36 2.74
2435 2546 6.369890 CGATGAACCAATATGAGTTCCCATAG 59.630 42.308 13.01 2.56 41.36 2.23
2436 2547 6.823286 TGAACCAATATGAGTTCCCATAGA 57.177 37.500 13.01 0.00 41.36 1.98
2437 2548 7.206789 TGAACCAATATGAGTTCCCATAGAA 57.793 36.000 13.01 0.00 41.36 2.10
2438 2549 7.282585 TGAACCAATATGAGTTCCCATAGAAG 58.717 38.462 13.01 0.00 41.36 2.85
2439 2550 6.192970 ACCAATATGAGTTCCCATAGAAGG 57.807 41.667 0.00 0.00 34.29 3.46
2451 2562 4.712476 CCCATAGAAGGGTCTCAAAGATG 58.288 47.826 0.00 0.00 44.24 2.90
2452 2563 4.445448 CCCATAGAAGGGTCTCAAAGATGG 60.445 50.000 0.00 0.00 44.24 3.51
2453 2564 4.410228 CCATAGAAGGGTCTCAAAGATGGA 59.590 45.833 0.00 0.00 37.24 3.41
2454 2565 3.990959 AGAAGGGTCTCAAAGATGGAC 57.009 47.619 0.00 0.00 0.00 4.02
2455 2566 3.251484 AGAAGGGTCTCAAAGATGGACA 58.749 45.455 0.00 0.00 31.95 4.02
2456 2567 3.848975 AGAAGGGTCTCAAAGATGGACAT 59.151 43.478 0.00 0.00 31.95 3.06
2457 2568 3.641434 AGGGTCTCAAAGATGGACATG 57.359 47.619 0.00 0.00 31.95 3.21
2458 2569 3.184628 AGGGTCTCAAAGATGGACATGA 58.815 45.455 0.00 0.00 31.95 3.07
2459 2570 3.784763 AGGGTCTCAAAGATGGACATGAT 59.215 43.478 0.00 0.00 31.95 2.45
2460 2571 4.971282 AGGGTCTCAAAGATGGACATGATA 59.029 41.667 0.00 0.00 31.95 2.15
2461 2572 5.610132 AGGGTCTCAAAGATGGACATGATAT 59.390 40.000 0.00 0.00 31.95 1.63
2462 2573 6.102321 AGGGTCTCAAAGATGGACATGATATT 59.898 38.462 0.00 0.00 31.95 1.28
2463 2574 6.429385 GGGTCTCAAAGATGGACATGATATTC 59.571 42.308 0.00 0.00 31.95 1.75
2464 2575 7.222872 GGTCTCAAAGATGGACATGATATTCT 58.777 38.462 0.00 0.00 31.95 2.40
2465 2576 7.172875 GGTCTCAAAGATGGACATGATATTCTG 59.827 40.741 0.00 0.00 31.95 3.02
2466 2577 7.714377 GTCTCAAAGATGGACATGATATTCTGT 59.286 37.037 0.00 0.00 31.19 3.41
2467 2578 8.270030 TCTCAAAGATGGACATGATATTCTGTT 58.730 33.333 0.00 0.00 0.00 3.16
2468 2579 9.551734 CTCAAAGATGGACATGATATTCTGTTA 57.448 33.333 0.00 0.00 0.00 2.41
2469 2580 9.904198 TCAAAGATGGACATGATATTCTGTTAA 57.096 29.630 0.00 0.00 0.00 2.01
2486 2597 9.715121 ATTCTGTTAAAATTTGACTGCATGAAT 57.285 25.926 0.00 2.91 0.00 2.57
2488 2599 9.844790 TCTGTTAAAATTTGACTGCATGAATAG 57.155 29.630 0.00 0.00 0.00 1.73
2489 2600 9.630098 CTGTTAAAATTTGACTGCATGAATAGT 57.370 29.630 0.00 0.00 0.00 2.12
2490 2601 9.979578 TGTTAAAATTTGACTGCATGAATAGTT 57.020 25.926 0.00 0.00 0.00 2.24
2494 2605 9.545105 AAAATTTGACTGCATGAATAGTTGAAA 57.455 25.926 0.00 2.15 0.00 2.69
2495 2606 9.545105 AAATTTGACTGCATGAATAGTTGAAAA 57.455 25.926 0.00 1.54 0.00 2.29
2496 2607 9.715121 AATTTGACTGCATGAATAGTTGAAAAT 57.285 25.926 0.00 3.56 0.00 1.82
2497 2608 8.746922 TTTGACTGCATGAATAGTTGAAAATC 57.253 30.769 0.00 0.00 0.00 2.17
2498 2609 6.545508 TGACTGCATGAATAGTTGAAAATCG 58.454 36.000 0.00 0.00 0.00 3.34
2499 2610 5.883661 ACTGCATGAATAGTTGAAAATCGG 58.116 37.500 0.00 0.00 0.00 4.18
2500 2611 5.415701 ACTGCATGAATAGTTGAAAATCGGT 59.584 36.000 0.00 0.00 0.00 4.69
2501 2612 6.071952 ACTGCATGAATAGTTGAAAATCGGTT 60.072 34.615 0.00 0.00 0.00 4.44
2502 2613 6.686630 TGCATGAATAGTTGAAAATCGGTTT 58.313 32.000 0.00 0.00 0.00 3.27
2503 2614 7.821652 TGCATGAATAGTTGAAAATCGGTTTA 58.178 30.769 0.00 0.00 0.00 2.01
2504 2615 7.753132 TGCATGAATAGTTGAAAATCGGTTTAC 59.247 33.333 0.00 0.00 0.00 2.01
2505 2616 7.968405 GCATGAATAGTTGAAAATCGGTTTACT 59.032 33.333 0.00 0.00 0.00 2.24
2508 2619 9.715121 TGAATAGTTGAAAATCGGTTTACTACT 57.285 29.630 4.76 5.99 0.00 2.57
2511 2622 7.198306 AGTTGAAAATCGGTTTACTACTTGG 57.802 36.000 0.00 0.00 0.00 3.61
2512 2623 6.993902 AGTTGAAAATCGGTTTACTACTTGGA 59.006 34.615 0.00 0.00 0.00 3.53
2513 2624 7.499895 AGTTGAAAATCGGTTTACTACTTGGAA 59.500 33.333 0.00 0.00 0.00 3.53
2514 2625 7.989416 TGAAAATCGGTTTACTACTTGGAAT 57.011 32.000 0.00 0.00 0.00 3.01
2515 2626 8.036273 TGAAAATCGGTTTACTACTTGGAATC 57.964 34.615 0.00 0.00 0.00 2.52
2516 2627 7.662258 TGAAAATCGGTTTACTACTTGGAATCA 59.338 33.333 0.00 0.00 0.00 2.57
2517 2628 7.989416 AAATCGGTTTACTACTTGGAATCAA 57.011 32.000 0.00 0.00 0.00 2.57
2518 2629 6.980051 ATCGGTTTACTACTTGGAATCAAC 57.020 37.500 0.00 0.00 0.00 3.18
2519 2630 5.856156 TCGGTTTACTACTTGGAATCAACA 58.144 37.500 0.00 0.00 0.00 3.33
2520 2631 6.469410 TCGGTTTACTACTTGGAATCAACAT 58.531 36.000 0.00 0.00 0.00 2.71
2521 2632 7.613585 TCGGTTTACTACTTGGAATCAACATA 58.386 34.615 0.00 0.00 0.00 2.29
2522 2633 8.095792 TCGGTTTACTACTTGGAATCAACATAA 58.904 33.333 0.00 0.00 0.00 1.90
2523 2634 8.889717 CGGTTTACTACTTGGAATCAACATAAT 58.110 33.333 0.00 0.00 0.00 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.002011 GCTTCGCTTTCCCCTTCCT 60.002 57.895 0.00 0.00 0.00 3.36
70 71 6.544928 AGAAATATTTTCCCCAACCATGTC 57.455 37.500 1.43 0.00 0.00 3.06
71 72 6.950860 AAGAAATATTTTCCCCAACCATGT 57.049 33.333 1.43 0.00 0.00 3.21
175 177 1.545841 GGGGGAAAGCGTTGAATCTT 58.454 50.000 0.00 0.00 0.00 2.40
200 202 4.545823 TCAACGCGTTGAATCTCTTTTT 57.454 36.364 43.05 8.90 45.56 1.94
210 212 1.332065 TGCAATTCTTCAACGCGTTGA 59.668 42.857 42.01 42.01 46.72 3.18
211 213 1.447938 GTGCAATTCTTCAACGCGTTG 59.552 47.619 39.16 39.16 41.71 4.10
212 214 1.064803 TGTGCAATTCTTCAACGCGTT 59.935 42.857 20.79 20.79 0.00 4.84
213 215 0.660488 TGTGCAATTCTTCAACGCGT 59.340 45.000 5.58 5.58 0.00 6.01
214 216 1.069973 TCTGTGCAATTCTTCAACGCG 60.070 47.619 3.53 3.53 0.00 6.01
215 217 2.578495 CTCTGTGCAATTCTTCAACGC 58.422 47.619 0.00 0.00 0.00 4.84
216 218 2.578495 GCTCTGTGCAATTCTTCAACG 58.422 47.619 0.00 0.00 42.31 4.10
249 251 3.731136 CCACGTGTGGTCTTGTGG 58.269 61.111 15.65 0.00 45.53 4.17
260 283 2.170260 AATTTGCGAGCGTCCACGTG 62.170 55.000 9.08 9.08 42.22 4.49
281 304 3.198068 TCACATCTTTCGGCAGCTTATC 58.802 45.455 0.00 0.00 0.00 1.75
296 319 2.795329 TCCTTCTGCCCTTTTCACATC 58.205 47.619 0.00 0.00 0.00 3.06
306 329 0.673956 GACTCCGTTTCCTTCTGCCC 60.674 60.000 0.00 0.00 0.00 5.36
338 361 1.000955 CACGACCATACTCCATAGGCC 59.999 57.143 0.00 0.00 0.00 5.19
345 374 4.806330 CATGTATACCACGACCATACTCC 58.194 47.826 0.00 0.00 0.00 3.85
347 376 3.305131 CGCATGTATACCACGACCATACT 60.305 47.826 0.00 0.00 0.00 2.12
348 377 2.984471 CGCATGTATACCACGACCATAC 59.016 50.000 0.00 0.00 0.00 2.39
349 378 2.885894 TCGCATGTATACCACGACCATA 59.114 45.455 0.00 0.00 0.00 2.74
350 379 1.684450 TCGCATGTATACCACGACCAT 59.316 47.619 0.00 0.00 0.00 3.55
351 380 1.104630 TCGCATGTATACCACGACCA 58.895 50.000 0.00 0.00 0.00 4.02
352 381 1.856597 GTTCGCATGTATACCACGACC 59.143 52.381 10.40 2.35 31.61 4.79
353 382 1.515631 CGTTCGCATGTATACCACGAC 59.484 52.381 10.40 6.63 31.61 4.34
354 383 1.132834 ACGTTCGCATGTATACCACGA 59.867 47.619 0.00 4.26 0.00 4.35
356 385 2.536130 GCAACGTTCGCATGTATACCAC 60.536 50.000 14.97 0.00 0.00 4.16
358 387 1.004292 GGCAACGTTCGCATGTATACC 60.004 52.381 19.45 2.04 0.00 2.73
359 388 2.362668 GGCAACGTTCGCATGTATAC 57.637 50.000 19.45 0.00 0.00 1.47
385 414 1.795170 ATGTCACACAGGTTTGGCGC 61.795 55.000 0.00 0.00 0.00 6.53
430 459 2.939103 ACAAGTTTAGCATGATCCGAGC 59.061 45.455 0.00 0.00 0.00 5.03
454 483 2.720758 CGCGTGCTGCACAGAGTAC 61.721 63.158 29.86 11.97 46.97 2.73
493 534 2.668550 GTGGCTGGAACACCGTCC 60.669 66.667 0.00 0.00 38.27 4.79
512 554 4.898265 TGGATGATTTGGTGAAAGGAAACA 59.102 37.500 0.00 0.00 0.00 2.83
521 563 0.801872 CGCGTTGGATGATTTGGTGA 59.198 50.000 0.00 0.00 0.00 4.02
547 589 2.567497 GGGTGTTCCGTCGTCTGGA 61.567 63.158 0.00 0.00 33.83 3.86
557 599 2.586648 ACAGGATTTGAGGGTGTTCC 57.413 50.000 0.00 0.00 0.00 3.62
558 600 2.484264 CGAACAGGATTTGAGGGTGTTC 59.516 50.000 3.89 3.89 42.28 3.18
559 601 2.504367 CGAACAGGATTTGAGGGTGTT 58.496 47.619 0.00 0.00 34.08 3.32
568 610 1.862602 GCCAACCGCGAACAGGATTT 61.863 55.000 8.23 0.00 0.00 2.17
592 634 1.065782 TCCACTGTCCTCTCTCTCTCG 60.066 57.143 0.00 0.00 0.00 4.04
613 657 0.892063 GGGTCACTGTGACTCCTCTC 59.108 60.000 32.66 18.79 46.19 3.20
670 714 1.334870 CGGCTCTCATCTCTCATGTCG 60.335 57.143 0.00 0.00 0.00 4.35
712 756 1.361668 CGAGGATTTCGTGTGGGCAG 61.362 60.000 0.00 0.00 44.27 4.85
817 871 1.465187 GCGGCTTGTTTTATCGTGTCC 60.465 52.381 0.00 0.00 0.00 4.02
914 976 2.738521 CAACCAGGTGGCGTCTCG 60.739 66.667 0.00 0.00 39.32 4.04
915 977 2.358737 CCAACCAGGTGGCGTCTC 60.359 66.667 0.00 0.00 39.32 3.36
922 984 3.052082 CAGCGAGCCAACCAGGTG 61.052 66.667 0.00 0.00 40.61 4.00
1086 1172 0.809241 GGCAGAGGATGAGCACGAAG 60.809 60.000 0.00 0.00 0.00 3.79
1260 1346 2.475864 CCTCTTAGACGTCGACGATAGG 59.524 54.545 41.52 29.70 43.02 2.57
1262 1348 1.863454 GCCTCTTAGACGTCGACGATA 59.137 52.381 41.52 28.83 43.02 2.92
1296 1394 2.114051 GTCGTCCTCCTCCTCGTCC 61.114 68.421 0.00 0.00 0.00 4.79
1393 1491 4.329545 TCTGTGGAAGGCGTGGGC 62.330 66.667 0.00 0.00 38.90 5.36
1525 1623 1.340568 GGTACGGATGGAGAACTAGCC 59.659 57.143 0.00 0.00 0.00 3.93
1526 1624 2.034812 CAGGTACGGATGGAGAACTAGC 59.965 54.545 0.00 0.00 0.00 3.42
1527 1625 2.034812 GCAGGTACGGATGGAGAACTAG 59.965 54.545 0.00 0.00 0.00 2.57
1537 1635 2.423898 CCCTCGTGCAGGTACGGAT 61.424 63.158 9.90 0.00 43.85 4.18
1559 1657 1.069296 TCGCCGCTGAAATGACAAAAG 60.069 47.619 0.00 0.00 0.00 2.27
1574 1672 2.461110 GCACCAAGTACCATCGCCG 61.461 63.158 0.00 0.00 0.00 6.46
1575 1673 1.369091 CTGCACCAAGTACCATCGCC 61.369 60.000 0.00 0.00 0.00 5.54
1667 1771 4.857037 GGAGTTGGTCAAATAATTTCGTGC 59.143 41.667 0.00 0.00 0.00 5.34
1670 1774 5.640732 CCAGGAGTTGGTCAAATAATTTCG 58.359 41.667 0.00 0.00 42.41 3.46
1693 1797 6.366332 CGGTACTGCTCCATATATTTTCTCAC 59.634 42.308 0.00 0.00 0.00 3.51
1707 1811 2.151049 AACACGGACGGTACTGCTCC 62.151 60.000 0.23 7.35 0.00 4.70
1741 1846 7.646922 GCCAATCTTTTATTGTGATCACTGATC 59.353 37.037 25.55 11.59 39.31 2.92
1760 1865 4.355549 TCAAATTCTCAATGGGCCAATCT 58.644 39.130 11.89 0.00 0.00 2.40
1806 1911 0.319641 GGACTGGACTTGACGGACAC 60.320 60.000 0.00 0.00 0.00 3.67
1807 1912 0.757561 TGGACTGGACTTGACGGACA 60.758 55.000 0.00 0.00 0.00 4.02
1818 1923 1.459348 TGCACTGGACTGGACTGGA 60.459 57.895 0.00 0.00 0.00 3.86
1819 1924 1.302033 GTGCACTGGACTGGACTGG 60.302 63.158 10.32 0.00 30.20 4.00
1820 1925 1.750930 AGTGCACTGGACTGGACTG 59.249 57.895 20.97 0.00 40.95 3.51
1821 1926 1.750930 CAGTGCACTGGACTGGACT 59.249 57.895 34.65 0.00 43.07 3.85
1822 1927 4.368391 CAGTGCACTGGACTGGAC 57.632 61.111 34.65 0.00 40.20 4.02
1904 2014 3.998341 AGCCGAGCAACGTTAAGAAATTA 59.002 39.130 0.00 0.00 40.78 1.40
1913 2023 0.814010 AGTTGAAGCCGAGCAACGTT 60.814 50.000 0.00 0.00 46.65 3.99
1914 2024 1.227556 AGTTGAAGCCGAGCAACGT 60.228 52.632 0.00 0.00 46.65 3.99
1923 2033 1.202222 CGATTCCATGCAGTTGAAGCC 60.202 52.381 0.00 0.00 0.00 4.35
1965 2075 1.697432 TCTCTTTTCTTGCGGGGAAGA 59.303 47.619 0.00 0.00 0.00 2.87
2008 2119 5.856126 TCTTCGTAGGTGTAGCATTTTTG 57.144 39.130 0.00 0.00 0.00 2.44
2009 2120 6.870971 TTTCTTCGTAGGTGTAGCATTTTT 57.129 33.333 0.00 0.00 0.00 1.94
2010 2121 6.293790 GGTTTTCTTCGTAGGTGTAGCATTTT 60.294 38.462 0.00 0.00 0.00 1.82
2011 2122 5.180680 GGTTTTCTTCGTAGGTGTAGCATTT 59.819 40.000 0.00 0.00 0.00 2.32
2012 2123 4.694037 GGTTTTCTTCGTAGGTGTAGCATT 59.306 41.667 0.00 0.00 0.00 3.56
2013 2124 4.020485 AGGTTTTCTTCGTAGGTGTAGCAT 60.020 41.667 0.00 0.00 0.00 3.79
2014 2125 3.322828 AGGTTTTCTTCGTAGGTGTAGCA 59.677 43.478 0.00 0.00 0.00 3.49
2015 2126 3.922910 AGGTTTTCTTCGTAGGTGTAGC 58.077 45.455 0.00 0.00 0.00 3.58
2016 2127 6.017400 TGTAGGTTTTCTTCGTAGGTGTAG 57.983 41.667 0.00 0.00 0.00 2.74
2017 2128 6.403866 TTGTAGGTTTTCTTCGTAGGTGTA 57.596 37.500 0.00 0.00 0.00 2.90
2018 2129 4.942761 TGTAGGTTTTCTTCGTAGGTGT 57.057 40.909 0.00 0.00 0.00 4.16
2019 2130 5.756833 AGTTTGTAGGTTTTCTTCGTAGGTG 59.243 40.000 0.00 0.00 0.00 4.00
2020 2131 5.922053 AGTTTGTAGGTTTTCTTCGTAGGT 58.078 37.500 0.00 0.00 0.00 3.08
2021 2132 6.221659 AGAGTTTGTAGGTTTTCTTCGTAGG 58.778 40.000 0.00 0.00 0.00 3.18
2022 2133 7.710766 AAGAGTTTGTAGGTTTTCTTCGTAG 57.289 36.000 0.00 0.00 0.00 3.51
2023 2134 9.199982 CATAAGAGTTTGTAGGTTTTCTTCGTA 57.800 33.333 0.00 0.00 0.00 3.43
2024 2135 7.713942 ACATAAGAGTTTGTAGGTTTTCTTCGT 59.286 33.333 0.00 0.00 0.00 3.85
2025 2136 8.084590 ACATAAGAGTTTGTAGGTTTTCTTCG 57.915 34.615 0.00 0.00 0.00 3.79
2050 2161 9.924650 GCGGAGAGATTATAGTTAGGAAATTTA 57.075 33.333 0.00 0.00 0.00 1.40
2051 2162 7.878644 GGCGGAGAGATTATAGTTAGGAAATTT 59.121 37.037 0.00 0.00 0.00 1.82
2052 2163 7.387643 GGCGGAGAGATTATAGTTAGGAAATT 58.612 38.462 0.00 0.00 0.00 1.82
2053 2164 6.070710 GGGCGGAGAGATTATAGTTAGGAAAT 60.071 42.308 0.00 0.00 0.00 2.17
2054 2165 5.245526 GGGCGGAGAGATTATAGTTAGGAAA 59.754 44.000 0.00 0.00 0.00 3.13
2055 2166 4.771054 GGGCGGAGAGATTATAGTTAGGAA 59.229 45.833 0.00 0.00 0.00 3.36
2056 2167 4.342359 GGGCGGAGAGATTATAGTTAGGA 58.658 47.826 0.00 0.00 0.00 2.94
2057 2168 3.447944 GGGGCGGAGAGATTATAGTTAGG 59.552 52.174 0.00 0.00 0.00 2.69
2058 2169 3.447944 GGGGGCGGAGAGATTATAGTTAG 59.552 52.174 0.00 0.00 0.00 2.34
2059 2170 3.077088 AGGGGGCGGAGAGATTATAGTTA 59.923 47.826 0.00 0.00 0.00 2.24
2060 2171 2.158143 AGGGGGCGGAGAGATTATAGTT 60.158 50.000 0.00 0.00 0.00 2.24
2061 2172 1.433592 AGGGGGCGGAGAGATTATAGT 59.566 52.381 0.00 0.00 0.00 2.12
2062 2173 1.827969 CAGGGGGCGGAGAGATTATAG 59.172 57.143 0.00 0.00 0.00 1.31
2063 2174 1.431633 TCAGGGGGCGGAGAGATTATA 59.568 52.381 0.00 0.00 0.00 0.98
2064 2175 0.191064 TCAGGGGGCGGAGAGATTAT 59.809 55.000 0.00 0.00 0.00 1.28
2065 2176 0.191064 ATCAGGGGGCGGAGAGATTA 59.809 55.000 0.00 0.00 0.00 1.75
2066 2177 0.695803 AATCAGGGGGCGGAGAGATT 60.696 55.000 0.00 0.00 0.00 2.40
2067 2178 0.695803 AAATCAGGGGGCGGAGAGAT 60.696 55.000 0.00 0.00 0.00 2.75
2068 2179 1.306997 AAATCAGGGGGCGGAGAGA 60.307 57.895 0.00 0.00 0.00 3.10
2069 2180 1.147153 GAAATCAGGGGGCGGAGAG 59.853 63.158 0.00 0.00 0.00 3.20
2070 2181 1.204786 TTGAAATCAGGGGGCGGAGA 61.205 55.000 0.00 0.00 0.00 3.71
2071 2182 1.032114 GTTGAAATCAGGGGGCGGAG 61.032 60.000 0.00 0.00 0.00 4.63
2072 2183 1.001393 GTTGAAATCAGGGGGCGGA 60.001 57.895 0.00 0.00 0.00 5.54
2073 2184 1.000896 AGTTGAAATCAGGGGGCGG 60.001 57.895 0.00 0.00 0.00 6.13
2074 2185 1.315257 CCAGTTGAAATCAGGGGGCG 61.315 60.000 0.00 0.00 0.00 6.13
2075 2186 0.972471 CCCAGTTGAAATCAGGGGGC 60.972 60.000 8.30 0.00 35.83 5.80
2076 2187 0.409484 ACCCAGTTGAAATCAGGGGG 59.591 55.000 16.43 14.31 43.96 5.40
2077 2188 1.549203 CACCCAGTTGAAATCAGGGG 58.451 55.000 10.10 11.42 43.96 4.79
2078 2189 1.549203 CCACCCAGTTGAAATCAGGG 58.451 55.000 5.01 5.01 45.20 4.45
2079 2190 1.203050 ACCCACCCAGTTGAAATCAGG 60.203 52.381 0.00 0.00 0.00 3.86
2080 2191 2.162681 GACCCACCCAGTTGAAATCAG 58.837 52.381 0.00 0.00 0.00 2.90
2081 2192 1.203001 GGACCCACCCAGTTGAAATCA 60.203 52.381 0.00 0.00 0.00 2.57
2082 2193 1.545841 GGACCCACCCAGTTGAAATC 58.454 55.000 0.00 0.00 0.00 2.17
2083 2194 3.765968 GGACCCACCCAGTTGAAAT 57.234 52.632 0.00 0.00 0.00 2.17
2098 2209 1.305886 AGAAATAAGGGGGTGGGGAC 58.694 55.000 0.00 0.00 0.00 4.46
2099 2210 2.084121 AAGAAATAAGGGGGTGGGGA 57.916 50.000 0.00 0.00 0.00 4.81
2100 2211 2.043801 TGAAAGAAATAAGGGGGTGGGG 59.956 50.000 0.00 0.00 0.00 4.96
2101 2212 3.466395 TGAAAGAAATAAGGGGGTGGG 57.534 47.619 0.00 0.00 0.00 4.61
2102 2213 3.513912 GGTTGAAAGAAATAAGGGGGTGG 59.486 47.826 0.00 0.00 0.00 4.61
2103 2214 3.192633 CGGTTGAAAGAAATAAGGGGGTG 59.807 47.826 0.00 0.00 0.00 4.61
2104 2215 3.074836 TCGGTTGAAAGAAATAAGGGGGT 59.925 43.478 0.00 0.00 0.00 4.95
2105 2216 3.692690 TCGGTTGAAAGAAATAAGGGGG 58.307 45.455 0.00 0.00 0.00 5.40
2106 2217 4.380550 GCTTCGGTTGAAAGAAATAAGGGG 60.381 45.833 0.00 0.00 32.66 4.79
2107 2218 4.380550 GGCTTCGGTTGAAAGAAATAAGGG 60.381 45.833 0.00 0.00 32.66 3.95
2108 2219 4.459337 AGGCTTCGGTTGAAAGAAATAAGG 59.541 41.667 0.00 0.00 32.66 2.69
2109 2220 5.629079 AGGCTTCGGTTGAAAGAAATAAG 57.371 39.130 0.00 0.00 32.66 1.73
2110 2221 6.399639 AAAGGCTTCGGTTGAAAGAAATAA 57.600 33.333 0.00 0.00 32.66 1.40
2111 2222 6.487331 TGTAAAGGCTTCGGTTGAAAGAAATA 59.513 34.615 0.00 0.00 32.66 1.40
2112 2223 4.937201 AAAGGCTTCGGTTGAAAGAAAT 57.063 36.364 0.00 0.00 32.66 2.17
2113 2224 4.641094 TGTAAAGGCTTCGGTTGAAAGAAA 59.359 37.500 0.00 0.00 32.66 2.52
2114 2225 4.200874 TGTAAAGGCTTCGGTTGAAAGAA 58.799 39.130 0.00 0.00 32.66 2.52
2115 2226 3.811083 TGTAAAGGCTTCGGTTGAAAGA 58.189 40.909 0.00 0.00 32.66 2.52
2116 2227 4.766404 ATGTAAAGGCTTCGGTTGAAAG 57.234 40.909 0.00 0.00 32.66 2.62
2117 2228 5.766174 ACTTATGTAAAGGCTTCGGTTGAAA 59.234 36.000 0.00 0.00 32.66 2.69
2118 2229 5.310451 ACTTATGTAAAGGCTTCGGTTGAA 58.690 37.500 0.00 0.00 0.00 2.69
2119 2230 4.901868 ACTTATGTAAAGGCTTCGGTTGA 58.098 39.130 0.00 0.00 0.00 3.18
2120 2231 5.622770 AACTTATGTAAAGGCTTCGGTTG 57.377 39.130 0.00 0.00 0.00 3.77
2121 2232 5.349543 CGTAACTTATGTAAAGGCTTCGGTT 59.650 40.000 0.00 1.62 0.00 4.44
2122 2233 4.866486 CGTAACTTATGTAAAGGCTTCGGT 59.134 41.667 0.00 0.00 0.00 4.69
2123 2234 4.866486 ACGTAACTTATGTAAAGGCTTCGG 59.134 41.667 0.00 0.00 0.00 4.30
2124 2235 7.433131 TCATACGTAACTTATGTAAAGGCTTCG 59.567 37.037 0.00 0.00 34.17 3.79
2125 2236 8.638685 TCATACGTAACTTATGTAAAGGCTTC 57.361 34.615 0.00 0.00 34.17 3.86
2126 2237 9.609346 ATTCATACGTAACTTATGTAAAGGCTT 57.391 29.630 0.00 0.00 34.17 4.35
2127 2238 9.257651 GATTCATACGTAACTTATGTAAAGGCT 57.742 33.333 0.00 0.00 34.17 4.58
2128 2239 9.037737 TGATTCATACGTAACTTATGTAAAGGC 57.962 33.333 0.00 0.00 34.17 4.35
2133 2244 9.868389 CGTACTGATTCATACGTAACTTATGTA 57.132 33.333 0.00 3.78 39.42 2.29
2134 2245 8.778141 CGTACTGATTCATACGTAACTTATGT 57.222 34.615 0.00 0.00 39.42 2.29
2145 2256 6.204301 TGCTAGACCTACGTACTGATTCATAC 59.796 42.308 0.00 0.00 0.00 2.39
2146 2257 6.293698 TGCTAGACCTACGTACTGATTCATA 58.706 40.000 0.00 0.00 0.00 2.15
2147 2258 5.131067 TGCTAGACCTACGTACTGATTCAT 58.869 41.667 0.00 0.00 0.00 2.57
2148 2259 4.520179 TGCTAGACCTACGTACTGATTCA 58.480 43.478 0.00 0.00 0.00 2.57
2149 2260 5.692613 ATGCTAGACCTACGTACTGATTC 57.307 43.478 0.00 0.00 0.00 2.52
2150 2261 5.360144 ACAATGCTAGACCTACGTACTGATT 59.640 40.000 0.00 0.00 0.00 2.57
2151 2262 4.888239 ACAATGCTAGACCTACGTACTGAT 59.112 41.667 0.00 0.00 0.00 2.90
2152 2263 4.267536 ACAATGCTAGACCTACGTACTGA 58.732 43.478 0.00 0.00 0.00 3.41
2153 2264 4.634184 ACAATGCTAGACCTACGTACTG 57.366 45.455 0.00 0.00 0.00 2.74
2154 2265 4.703575 TCAACAATGCTAGACCTACGTACT 59.296 41.667 0.00 0.00 0.00 2.73
2155 2266 4.990257 TCAACAATGCTAGACCTACGTAC 58.010 43.478 0.00 0.00 0.00 3.67
2156 2267 5.847111 ATCAACAATGCTAGACCTACGTA 57.153 39.130 0.00 0.00 0.00 3.57
2157 2268 4.737855 ATCAACAATGCTAGACCTACGT 57.262 40.909 0.00 0.00 0.00 3.57
2158 2269 5.005779 GTGAATCAACAATGCTAGACCTACG 59.994 44.000 0.00 0.00 0.00 3.51
2159 2270 5.005779 CGTGAATCAACAATGCTAGACCTAC 59.994 44.000 0.00 0.00 0.00 3.18
2160 2271 5.105513 TCGTGAATCAACAATGCTAGACCTA 60.106 40.000 0.00 0.00 0.00 3.08
2161 2272 3.935203 CGTGAATCAACAATGCTAGACCT 59.065 43.478 0.00 0.00 0.00 3.85
2162 2273 3.932710 TCGTGAATCAACAATGCTAGACC 59.067 43.478 0.00 0.00 0.00 3.85
2163 2274 5.530519 TTCGTGAATCAACAATGCTAGAC 57.469 39.130 0.00 0.00 0.00 2.59
2164 2275 9.196552 CTATATTCGTGAATCAACAATGCTAGA 57.803 33.333 0.00 0.00 32.50 2.43
2165 2276 8.438513 CCTATATTCGTGAATCAACAATGCTAG 58.561 37.037 0.00 0.00 32.50 3.42
2166 2277 7.387673 CCCTATATTCGTGAATCAACAATGCTA 59.612 37.037 0.00 0.00 32.50 3.49
2167 2278 6.205464 CCCTATATTCGTGAATCAACAATGCT 59.795 38.462 0.00 0.00 32.50 3.79
2168 2279 6.373779 CCCTATATTCGTGAATCAACAATGC 58.626 40.000 0.00 0.00 32.50 3.56
2169 2280 6.373779 GCCCTATATTCGTGAATCAACAATG 58.626 40.000 0.00 0.00 32.50 2.82
2170 2281 5.179368 CGCCCTATATTCGTGAATCAACAAT 59.821 40.000 0.00 0.00 32.50 2.71
2171 2282 4.509970 CGCCCTATATTCGTGAATCAACAA 59.490 41.667 0.00 0.00 32.50 2.83
2172 2283 4.055360 CGCCCTATATTCGTGAATCAACA 58.945 43.478 0.00 0.00 32.50 3.33
2173 2284 4.056050 ACGCCCTATATTCGTGAATCAAC 58.944 43.478 0.00 0.00 34.92 3.18
2174 2285 4.330944 ACGCCCTATATTCGTGAATCAA 57.669 40.909 0.00 0.00 34.92 2.57
2175 2286 4.055360 CAACGCCCTATATTCGTGAATCA 58.945 43.478 0.00 0.00 36.49 2.57
2176 2287 3.120649 GCAACGCCCTATATTCGTGAATC 60.121 47.826 0.00 0.00 36.49 2.52
2177 2288 2.806244 GCAACGCCCTATATTCGTGAAT 59.194 45.455 0.22 0.22 36.49 2.57
2178 2289 2.206750 GCAACGCCCTATATTCGTGAA 58.793 47.619 0.00 0.00 36.49 3.18
2179 2290 1.539496 GGCAACGCCCTATATTCGTGA 60.539 52.381 0.00 0.00 44.06 4.35
2180 2291 0.865769 GGCAACGCCCTATATTCGTG 59.134 55.000 0.00 0.00 44.06 4.35
2181 2292 3.300711 GGCAACGCCCTATATTCGT 57.699 52.632 0.00 0.00 44.06 3.85
2192 2303 1.376609 AAATCCGATCCAGGCAACGC 61.377 55.000 0.00 0.00 46.39 4.84
2193 2304 0.378257 CAAATCCGATCCAGGCAACG 59.622 55.000 0.00 0.00 46.39 4.10
2194 2305 1.463674 ACAAATCCGATCCAGGCAAC 58.536 50.000 0.00 0.00 0.00 4.17
2195 2306 2.421388 CCTACAAATCCGATCCAGGCAA 60.421 50.000 0.00 0.00 0.00 4.52
2196 2307 1.140852 CCTACAAATCCGATCCAGGCA 59.859 52.381 0.00 0.00 0.00 4.75
2197 2308 1.884235 CCTACAAATCCGATCCAGGC 58.116 55.000 0.00 0.00 0.00 4.85
2198 2309 1.417890 AGCCTACAAATCCGATCCAGG 59.582 52.381 0.00 0.00 0.00 4.45
2199 2310 2.487934 CAGCCTACAAATCCGATCCAG 58.512 52.381 0.00 0.00 0.00 3.86
2200 2311 1.140852 CCAGCCTACAAATCCGATCCA 59.859 52.381 0.00 0.00 0.00 3.41
2201 2312 1.416401 TCCAGCCTACAAATCCGATCC 59.584 52.381 0.00 0.00 0.00 3.36
2202 2313 2.910688 TCCAGCCTACAAATCCGATC 57.089 50.000 0.00 0.00 0.00 3.69
2203 2314 2.289072 CGATCCAGCCTACAAATCCGAT 60.289 50.000 0.00 0.00 0.00 4.18
2204 2315 1.068588 CGATCCAGCCTACAAATCCGA 59.931 52.381 0.00 0.00 0.00 4.55
2205 2316 1.502231 CGATCCAGCCTACAAATCCG 58.498 55.000 0.00 0.00 0.00 4.18
2206 2317 1.884235 CCGATCCAGCCTACAAATCC 58.116 55.000 0.00 0.00 0.00 3.01
2207 2318 1.230324 GCCGATCCAGCCTACAAATC 58.770 55.000 0.00 0.00 0.00 2.17
2208 2319 0.532862 CGCCGATCCAGCCTACAAAT 60.533 55.000 0.00 0.00 0.00 2.32
2209 2320 1.153449 CGCCGATCCAGCCTACAAA 60.153 57.895 0.00 0.00 0.00 2.83
2210 2321 2.055633 TCGCCGATCCAGCCTACAA 61.056 57.895 0.00 0.00 0.00 2.41
2211 2322 2.441348 TCGCCGATCCAGCCTACA 60.441 61.111 0.00 0.00 0.00 2.74
2212 2323 2.027751 GTCGCCGATCCAGCCTAC 59.972 66.667 0.00 0.00 0.00 3.18
2213 2324 3.224324 GGTCGCCGATCCAGCCTA 61.224 66.667 0.00 0.00 0.00 3.93
2216 2327 4.162690 AAGGGTCGCCGATCCAGC 62.163 66.667 20.25 0.00 34.77 4.85
2217 2328 2.202932 CAAGGGTCGCCGATCCAG 60.203 66.667 20.25 6.84 34.77 3.86
2218 2329 3.781307 CCAAGGGTCGCCGATCCA 61.781 66.667 20.25 0.00 34.77 3.41
2219 2330 3.782443 ACCAAGGGTCGCCGATCC 61.782 66.667 8.76 8.76 31.91 3.36
2220 2331 2.511600 CACCAAGGGTCGCCGATC 60.512 66.667 0.00 0.00 31.02 3.69
2221 2332 2.890766 AACACCAAGGGTCGCCGAT 61.891 57.895 0.00 0.00 31.02 4.18
2222 2333 3.552384 AACACCAAGGGTCGCCGA 61.552 61.111 0.00 0.00 31.02 5.54
2223 2334 3.353836 CAACACCAAGGGTCGCCG 61.354 66.667 0.00 0.00 31.02 6.46
2224 2335 3.670377 GCAACACCAAGGGTCGCC 61.670 66.667 0.00 0.00 31.02 5.54
2225 2336 3.670377 GGCAACACCAAGGGTCGC 61.670 66.667 0.00 0.00 38.86 5.19
2226 2337 2.113139 AGGCAACACCAAGGGTCG 59.887 61.111 0.00 0.00 43.14 4.79
2227 2338 1.903404 CCAGGCAACACCAAGGGTC 60.903 63.158 0.00 0.00 43.14 4.46
2228 2339 1.357272 TACCAGGCAACACCAAGGGT 61.357 55.000 0.00 0.00 43.14 4.34
2229 2340 0.039618 ATACCAGGCAACACCAAGGG 59.960 55.000 0.00 0.00 43.14 3.95
2230 2341 1.923356 AATACCAGGCAACACCAAGG 58.077 50.000 0.00 0.00 43.14 3.61
2231 2342 3.157087 AGAAATACCAGGCAACACCAAG 58.843 45.455 0.00 0.00 43.14 3.61
2232 2343 3.153919 GAGAAATACCAGGCAACACCAA 58.846 45.455 0.00 0.00 43.14 3.67
2233 2344 2.375174 AGAGAAATACCAGGCAACACCA 59.625 45.455 0.00 0.00 43.14 4.17
2234 2345 3.073274 AGAGAAATACCAGGCAACACC 57.927 47.619 0.00 0.00 41.41 4.16
2235 2346 5.222631 CAAAAGAGAAATACCAGGCAACAC 58.777 41.667 0.00 0.00 41.41 3.32
2236 2347 4.261994 GCAAAAGAGAAATACCAGGCAACA 60.262 41.667 0.00 0.00 41.41 3.33
2237 2348 4.237724 GCAAAAGAGAAATACCAGGCAAC 58.762 43.478 0.00 0.00 0.00 4.17
2238 2349 3.894427 TGCAAAAGAGAAATACCAGGCAA 59.106 39.130 0.00 0.00 0.00 4.52
2239 2350 3.495331 TGCAAAAGAGAAATACCAGGCA 58.505 40.909 0.00 0.00 0.00 4.75
2240 2351 4.440663 GGATGCAAAAGAGAAATACCAGGC 60.441 45.833 0.00 0.00 0.00 4.85
2241 2352 4.952335 AGGATGCAAAAGAGAAATACCAGG 59.048 41.667 0.00 0.00 0.00 4.45
2242 2353 6.151648 TGAAGGATGCAAAAGAGAAATACCAG 59.848 38.462 0.00 0.00 0.00 4.00
2243 2354 6.009589 TGAAGGATGCAAAAGAGAAATACCA 58.990 36.000 0.00 0.00 0.00 3.25
2244 2355 6.375455 TCTGAAGGATGCAAAAGAGAAATACC 59.625 38.462 0.00 0.00 0.00 2.73
2245 2356 7.383102 TCTGAAGGATGCAAAAGAGAAATAC 57.617 36.000 0.00 0.00 0.00 1.89
2246 2357 7.993101 CATCTGAAGGATGCAAAAGAGAAATA 58.007 34.615 0.00 0.00 44.21 1.40
2247 2358 6.864342 CATCTGAAGGATGCAAAAGAGAAAT 58.136 36.000 0.00 0.00 44.21 2.17
2248 2359 6.263516 CATCTGAAGGATGCAAAAGAGAAA 57.736 37.500 0.00 0.00 44.21 2.52
2249 2360 5.892160 CATCTGAAGGATGCAAAAGAGAA 57.108 39.130 0.00 0.00 44.21 2.87
2260 2371 5.070847 ACCAAACAAAAAGCATCTGAAGGAT 59.929 36.000 0.00 0.00 34.51 3.24
2261 2372 4.405358 ACCAAACAAAAAGCATCTGAAGGA 59.595 37.500 0.00 0.00 0.00 3.36
2262 2373 4.696455 ACCAAACAAAAAGCATCTGAAGG 58.304 39.130 0.00 0.00 0.00 3.46
2263 2374 4.746611 GGACCAAACAAAAAGCATCTGAAG 59.253 41.667 0.00 0.00 0.00 3.02
2264 2375 4.405358 AGGACCAAACAAAAAGCATCTGAA 59.595 37.500 0.00 0.00 0.00 3.02
2265 2376 3.960102 AGGACCAAACAAAAAGCATCTGA 59.040 39.130 0.00 0.00 0.00 3.27
2266 2377 4.326504 AGGACCAAACAAAAAGCATCTG 57.673 40.909 0.00 0.00 0.00 2.90
2267 2378 5.357742 AAAGGACCAAACAAAAAGCATCT 57.642 34.783 0.00 0.00 0.00 2.90
2268 2379 6.128035 ACAAAAAGGACCAAACAAAAAGCATC 60.128 34.615 0.00 0.00 0.00 3.91
2269 2380 5.709631 ACAAAAAGGACCAAACAAAAAGCAT 59.290 32.000 0.00 0.00 0.00 3.79
2270 2381 5.066593 ACAAAAAGGACCAAACAAAAAGCA 58.933 33.333 0.00 0.00 0.00 3.91
2271 2382 5.621197 ACAAAAAGGACCAAACAAAAAGC 57.379 34.783 0.00 0.00 0.00 3.51
2272 2383 8.864069 AAAAACAAAAAGGACCAAACAAAAAG 57.136 26.923 0.00 0.00 0.00 2.27
2273 2384 8.687242 AGAAAAACAAAAAGGACCAAACAAAAA 58.313 25.926 0.00 0.00 0.00 1.94
2274 2385 8.226819 AGAAAAACAAAAAGGACCAAACAAAA 57.773 26.923 0.00 0.00 0.00 2.44
2275 2386 7.809546 AGAAAAACAAAAAGGACCAAACAAA 57.190 28.000 0.00 0.00 0.00 2.83
2276 2387 7.809546 AAGAAAAACAAAAAGGACCAAACAA 57.190 28.000 0.00 0.00 0.00 2.83
2277 2388 7.809546 AAAGAAAAACAAAAAGGACCAAACA 57.190 28.000 0.00 0.00 0.00 2.83
2278 2389 9.176181 GAAAAAGAAAAACAAAAAGGACCAAAC 57.824 29.630 0.00 0.00 0.00 2.93
2279 2390 9.126151 AGAAAAAGAAAAACAAAAAGGACCAAA 57.874 25.926 0.00 0.00 0.00 3.28
2280 2391 8.684386 AGAAAAAGAAAAACAAAAAGGACCAA 57.316 26.923 0.00 0.00 0.00 3.67
2281 2392 8.684386 AAGAAAAAGAAAAACAAAAAGGACCA 57.316 26.923 0.00 0.00 0.00 4.02
2282 2393 9.959749 AAAAGAAAAAGAAAAACAAAAAGGACC 57.040 25.926 0.00 0.00 0.00 4.46
2284 2395 9.871299 CGAAAAGAAAAAGAAAAACAAAAAGGA 57.129 25.926 0.00 0.00 0.00 3.36
2285 2396 9.658475 ACGAAAAGAAAAAGAAAAACAAAAAGG 57.342 25.926 0.00 0.00 0.00 3.11
2296 2407 9.902196 ACAAAGAAACTACGAAAAGAAAAAGAA 57.098 25.926 0.00 0.00 0.00 2.52
2297 2408 9.902196 AACAAAGAAACTACGAAAAGAAAAAGA 57.098 25.926 0.00 0.00 0.00 2.52
2300 2411 9.680315 TGAAACAAAGAAACTACGAAAAGAAAA 57.320 25.926 0.00 0.00 0.00 2.29
2301 2412 9.680315 TTGAAACAAAGAAACTACGAAAAGAAA 57.320 25.926 0.00 0.00 0.00 2.52
2302 2413 9.849166 ATTGAAACAAAGAAACTACGAAAAGAA 57.151 25.926 0.00 0.00 0.00 2.52
2303 2414 9.849166 AATTGAAACAAAGAAACTACGAAAAGA 57.151 25.926 0.00 0.00 0.00 2.52
2307 2418 9.849166 AGAAAATTGAAACAAAGAAACTACGAA 57.151 25.926 0.00 0.00 0.00 3.85
2308 2419 9.849166 AAGAAAATTGAAACAAAGAAACTACGA 57.151 25.926 0.00 0.00 0.00 3.43
2315 2426 8.934825 CCAGACAAAGAAAATTGAAACAAAGAA 58.065 29.630 0.00 0.00 34.38 2.52
2316 2427 8.310382 TCCAGACAAAGAAAATTGAAACAAAGA 58.690 29.630 0.00 0.00 34.38 2.52
2317 2428 8.382875 GTCCAGACAAAGAAAATTGAAACAAAG 58.617 33.333 0.00 0.00 34.38 2.77
2318 2429 7.875041 TGTCCAGACAAAGAAAATTGAAACAAA 59.125 29.630 0.00 0.00 38.56 2.83
2319 2430 7.382110 TGTCCAGACAAAGAAAATTGAAACAA 58.618 30.769 0.00 0.00 38.56 2.83
2320 2431 6.929625 TGTCCAGACAAAGAAAATTGAAACA 58.070 32.000 0.00 0.00 38.56 2.83
2335 2446 1.691976 ACGGAACAGATTGTCCAGACA 59.308 47.619 0.00 0.00 39.98 3.41
2336 2447 2.457366 ACGGAACAGATTGTCCAGAC 57.543 50.000 0.00 0.00 0.00 3.51
2337 2448 4.221924 TCATAACGGAACAGATTGTCCAGA 59.778 41.667 0.00 0.00 0.00 3.86
2338 2449 4.330074 GTCATAACGGAACAGATTGTCCAG 59.670 45.833 0.00 0.00 0.00 3.86
2339 2450 4.020573 AGTCATAACGGAACAGATTGTCCA 60.021 41.667 0.00 0.00 0.00 4.02
2340 2451 4.330074 CAGTCATAACGGAACAGATTGTCC 59.670 45.833 0.00 0.00 0.00 4.02
2341 2452 4.929808 ACAGTCATAACGGAACAGATTGTC 59.070 41.667 0.00 0.00 0.00 3.18
2342 2453 4.894784 ACAGTCATAACGGAACAGATTGT 58.105 39.130 0.00 0.00 0.00 2.71
2343 2454 6.590292 AGTTACAGTCATAACGGAACAGATTG 59.410 38.462 0.00 0.00 39.58 2.67
2344 2455 6.698380 AGTTACAGTCATAACGGAACAGATT 58.302 36.000 0.00 0.00 39.58 2.40
2345 2456 6.282199 AGTTACAGTCATAACGGAACAGAT 57.718 37.500 0.00 0.00 39.58 2.90
2346 2457 5.717078 AGTTACAGTCATAACGGAACAGA 57.283 39.130 0.00 0.00 39.58 3.41
2347 2458 6.849502 TCTAGTTACAGTCATAACGGAACAG 58.150 40.000 0.00 0.00 39.58 3.16
2348 2459 6.822667 TCTAGTTACAGTCATAACGGAACA 57.177 37.500 0.00 0.00 39.58 3.18
2349 2460 7.478322 TGATCTAGTTACAGTCATAACGGAAC 58.522 38.462 0.00 0.00 39.58 3.62
2350 2461 7.634671 TGATCTAGTTACAGTCATAACGGAA 57.365 36.000 0.00 0.00 39.58 4.30
2351 2462 7.501225 TCATGATCTAGTTACAGTCATAACGGA 59.499 37.037 0.00 0.00 39.58 4.69
2352 2463 7.649057 TCATGATCTAGTTACAGTCATAACGG 58.351 38.462 0.00 0.00 39.58 4.44
2353 2464 9.684448 AATCATGATCTAGTTACAGTCATAACG 57.316 33.333 9.06 0.00 39.58 3.18
2355 2466 9.987272 CCAATCATGATCTAGTTACAGTCATAA 57.013 33.333 9.06 0.00 0.00 1.90
2356 2467 8.090831 GCCAATCATGATCTAGTTACAGTCATA 58.909 37.037 9.06 0.00 0.00 2.15
2357 2468 6.933521 GCCAATCATGATCTAGTTACAGTCAT 59.066 38.462 9.06 0.00 0.00 3.06
2358 2469 6.283694 GCCAATCATGATCTAGTTACAGTCA 58.716 40.000 9.06 0.00 0.00 3.41
2359 2470 5.403766 CGCCAATCATGATCTAGTTACAGTC 59.596 44.000 9.06 0.00 0.00 3.51
2360 2471 5.292765 CGCCAATCATGATCTAGTTACAGT 58.707 41.667 9.06 0.00 0.00 3.55
2361 2472 4.151335 GCGCCAATCATGATCTAGTTACAG 59.849 45.833 9.06 0.00 0.00 2.74
2362 2473 4.058124 GCGCCAATCATGATCTAGTTACA 58.942 43.478 9.06 0.00 0.00 2.41
2363 2474 3.121944 CGCGCCAATCATGATCTAGTTAC 59.878 47.826 9.06 0.00 0.00 2.50
2364 2475 3.317150 CGCGCCAATCATGATCTAGTTA 58.683 45.455 9.06 0.00 0.00 2.24
2365 2476 2.138320 CGCGCCAATCATGATCTAGTT 58.862 47.619 9.06 0.00 0.00 2.24
2366 2477 1.788258 CGCGCCAATCATGATCTAGT 58.212 50.000 9.06 0.00 0.00 2.57
2367 2478 0.441533 GCGCGCCAATCATGATCTAG 59.558 55.000 23.24 2.00 0.00 2.43
2368 2479 1.284297 CGCGCGCCAATCATGATCTA 61.284 55.000 27.72 0.00 0.00 1.98
2369 2480 2.601398 CGCGCGCCAATCATGATCT 61.601 57.895 27.72 0.00 0.00 2.75
2370 2481 2.127496 CGCGCGCCAATCATGATC 60.127 61.111 27.72 0.00 0.00 2.92
2371 2482 2.472059 AACGCGCGCCAATCATGAT 61.472 52.632 32.58 1.18 0.00 2.45
2372 2483 3.124270 AACGCGCGCCAATCATGA 61.124 55.556 32.58 0.00 0.00 3.07
2373 2484 2.945576 CAACGCGCGCCAATCATG 60.946 61.111 32.58 12.27 0.00 3.07
2374 2485 4.834892 GCAACGCGCGCCAATCAT 62.835 61.111 32.58 5.07 0.00 2.45
2391 2502 3.655481 AAAAAGAGACGGGCGCAG 58.345 55.556 10.83 4.90 0.00 5.18
2405 2516 7.362574 GGGAACTCATATTGGTTCATCGAAAAA 60.363 37.037 15.26 0.00 42.29 1.94
2406 2517 6.094881 GGGAACTCATATTGGTTCATCGAAAA 59.905 38.462 15.26 0.00 42.29 2.29
2407 2518 5.588648 GGGAACTCATATTGGTTCATCGAAA 59.411 40.000 15.26 0.00 42.29 3.46
2408 2519 5.123227 GGGAACTCATATTGGTTCATCGAA 58.877 41.667 15.26 0.00 42.29 3.71
2409 2520 4.163268 TGGGAACTCATATTGGTTCATCGA 59.837 41.667 15.26 0.00 42.29 3.59
2410 2521 4.450976 TGGGAACTCATATTGGTTCATCG 58.549 43.478 15.26 0.00 42.29 3.84
2411 2522 7.453393 TCTATGGGAACTCATATTGGTTCATC 58.547 38.462 15.26 9.62 42.29 2.92
2412 2523 7.392766 TCTATGGGAACTCATATTGGTTCAT 57.607 36.000 15.26 7.77 42.29 2.57
2413 2524 6.823286 TCTATGGGAACTCATATTGGTTCA 57.177 37.500 15.26 2.47 42.29 3.18
2414 2525 6.712547 CCTTCTATGGGAACTCATATTGGTTC 59.287 42.308 8.33 8.33 40.49 3.62
2415 2526 6.605119 CCTTCTATGGGAACTCATATTGGTT 58.395 40.000 0.00 0.00 0.00 3.67
2416 2527 6.192970 CCTTCTATGGGAACTCATATTGGT 57.807 41.667 0.00 0.00 0.00 3.67
2430 2541 4.410228 TCCATCTTTGAGACCCTTCTATGG 59.590 45.833 0.00 0.00 29.47 2.74
2431 2542 5.104776 TGTCCATCTTTGAGACCCTTCTATG 60.105 44.000 0.00 0.00 29.47 2.23
2432 2543 5.032846 TGTCCATCTTTGAGACCCTTCTAT 58.967 41.667 0.00 0.00 29.47 1.98
2433 2544 4.425772 TGTCCATCTTTGAGACCCTTCTA 58.574 43.478 0.00 0.00 29.47 2.10
2434 2545 3.251484 TGTCCATCTTTGAGACCCTTCT 58.749 45.455 0.00 0.00 33.37 2.85
2435 2546 3.703001 TGTCCATCTTTGAGACCCTTC 57.297 47.619 0.00 0.00 0.00 3.46
2436 2547 3.588842 TCATGTCCATCTTTGAGACCCTT 59.411 43.478 0.00 0.00 0.00 3.95
2437 2548 3.184628 TCATGTCCATCTTTGAGACCCT 58.815 45.455 0.00 0.00 0.00 4.34
2438 2549 3.634397 TCATGTCCATCTTTGAGACCC 57.366 47.619 0.00 0.00 0.00 4.46
2439 2550 7.172875 CAGAATATCATGTCCATCTTTGAGACC 59.827 40.741 0.00 0.00 0.00 3.85
2440 2551 7.714377 ACAGAATATCATGTCCATCTTTGAGAC 59.286 37.037 0.00 0.00 0.00 3.36
2441 2552 7.799081 ACAGAATATCATGTCCATCTTTGAGA 58.201 34.615 0.00 0.00 0.00 3.27
2442 2553 8.447924 AACAGAATATCATGTCCATCTTTGAG 57.552 34.615 0.00 0.00 0.00 3.02
2443 2554 9.904198 TTAACAGAATATCATGTCCATCTTTGA 57.096 29.630 0.00 0.00 0.00 2.69
2460 2571 9.715121 ATTCATGCAGTCAAATTTTAACAGAAT 57.285 25.926 0.00 0.00 0.00 2.40
2462 2573 9.844790 CTATTCATGCAGTCAAATTTTAACAGA 57.155 29.630 0.00 0.00 0.00 3.41
2463 2574 9.630098 ACTATTCATGCAGTCAAATTTTAACAG 57.370 29.630 0.00 0.00 0.00 3.16
2464 2575 9.979578 AACTATTCATGCAGTCAAATTTTAACA 57.020 25.926 0.00 0.00 0.00 2.41
2468 2579 9.545105 TTTCAACTATTCATGCAGTCAAATTTT 57.455 25.926 0.00 0.00 0.00 1.82
2469 2580 9.545105 TTTTCAACTATTCATGCAGTCAAATTT 57.455 25.926 0.00 0.00 0.00 1.82
2470 2581 9.715121 ATTTTCAACTATTCATGCAGTCAAATT 57.285 25.926 0.00 0.00 0.00 1.82
2471 2582 9.362539 GATTTTCAACTATTCATGCAGTCAAAT 57.637 29.630 0.00 0.00 0.00 2.32
2472 2583 7.538334 CGATTTTCAACTATTCATGCAGTCAAA 59.462 33.333 0.00 0.00 0.00 2.69
2473 2584 7.022979 CGATTTTCAACTATTCATGCAGTCAA 58.977 34.615 0.00 0.00 0.00 3.18
2474 2585 6.403527 CCGATTTTCAACTATTCATGCAGTCA 60.404 38.462 0.00 0.00 0.00 3.41
2475 2586 5.967674 CCGATTTTCAACTATTCATGCAGTC 59.032 40.000 0.00 0.00 0.00 3.51
2476 2587 5.415701 ACCGATTTTCAACTATTCATGCAGT 59.584 36.000 0.00 0.00 0.00 4.40
2477 2588 5.883661 ACCGATTTTCAACTATTCATGCAG 58.116 37.500 0.00 0.00 0.00 4.41
2478 2589 5.895636 ACCGATTTTCAACTATTCATGCA 57.104 34.783 0.00 0.00 0.00 3.96
2479 2590 7.968405 AGTAAACCGATTTTCAACTATTCATGC 59.032 33.333 0.00 0.00 0.00 4.06
2482 2593 9.715121 AGTAGTAAACCGATTTTCAACTATTCA 57.285 29.630 0.00 0.00 0.00 2.57
2485 2596 8.943002 CCAAGTAGTAAACCGATTTTCAACTAT 58.057 33.333 0.00 0.00 0.00 2.12
2486 2597 8.149647 TCCAAGTAGTAAACCGATTTTCAACTA 58.850 33.333 0.00 0.00 0.00 2.24
2487 2598 6.993902 TCCAAGTAGTAAACCGATTTTCAACT 59.006 34.615 0.00 0.00 0.00 3.16
2488 2599 7.193377 TCCAAGTAGTAAACCGATTTTCAAC 57.807 36.000 0.00 0.00 0.00 3.18
2489 2600 7.804843 TTCCAAGTAGTAAACCGATTTTCAA 57.195 32.000 0.00 0.00 0.00 2.69
2490 2601 7.662258 TGATTCCAAGTAGTAAACCGATTTTCA 59.338 33.333 0.00 0.00 0.00 2.69
2491 2602 8.036273 TGATTCCAAGTAGTAAACCGATTTTC 57.964 34.615 0.00 0.00 0.00 2.29
2492 2603 7.989416 TGATTCCAAGTAGTAAACCGATTTT 57.011 32.000 0.00 0.00 0.00 1.82
2493 2604 7.446013 TGTTGATTCCAAGTAGTAAACCGATTT 59.554 33.333 0.00 0.00 32.06 2.17
2494 2605 6.938030 TGTTGATTCCAAGTAGTAAACCGATT 59.062 34.615 0.00 0.00 32.06 3.34
2495 2606 6.469410 TGTTGATTCCAAGTAGTAAACCGAT 58.531 36.000 0.00 0.00 32.06 4.18
2496 2607 5.856156 TGTTGATTCCAAGTAGTAAACCGA 58.144 37.500 0.00 0.00 32.06 4.69
2497 2608 6.737254 ATGTTGATTCCAAGTAGTAAACCG 57.263 37.500 0.00 0.00 32.06 4.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.