>input_sequence_77157
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---------------------------------------------ATGACCTTCCCGCTGGTGTGCTACTGCAACGCGGT
GCCCCGGCCCATCGCCGCCGTGTTCAGGTTCCTCCACGCCACCGCGCTGGCCTTCGTGCTCATCCTCTGCCTCCTCGGCC
TCTACGAGTTCCCCTACACCCCCGAGGAGCACGCGGCGCTCATCAGCGGCCCTCGCCGCCGTCCCAACCGGGACGGCGCG
CTTCCGGAGACGGTGAAGCGGCGGCTGCCCCCCGTCGAGTTCGCCGCGCACCTGGCGGAGCGGTCCCTATCGTCGACGTC
TAAGAGGC---CG---------GGTCGCCACGAGGACGAGGAGGAGGACGACGGCGGCGACGCGAGCACGTGCAGGGTGT
GCCTGGAGCGGCTGGAGCCGACGGACGAGGTGCGGCCGCTGGGCAACTGCGCCCACGCCTTCCACAGAGGCTGCATCGAC
CGGTGGATCGACGTCGGCGAGGCGACGTGCCCGCTGTGCCGGTCCAGCCTGCTGCCTCGTCAGCGCGGGGGGCTGCTCGC
CAGTGCCAGGGCCCGGTTCAGCGGCTAG----------------------------------------------------
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>chr2A_1_TraesCS2A01G395100
TACAGGAAGGGGAAAGCGAAGCGAAACCGGTTAACTAGTTCTTTTTAAATATGATCACATGCAGTTCTTCGACATGG-TT
GGGGAAAATATTTCTTAAATATGAGTAACATCATTCATGTGATTGATTGTATGTTAGTAATAGGTATGGTAATCATCTAT
CCATTGAGTATAGATTAAGATTCAACGCTTTCCCCCGCAAAAAAAAGAGATTCAACGCGTTGAAGAATTGCACAGAGCAC
CATAGAGTGGCCAC-------------------AAGACC--ACACGTGGACGCTCGCAAATTAGATAAGCTGCCGAAAGA
TGTGAAAAGGGCAGAAGGAAACGGAGTCCCTGACGAAGCTGGC------CTATGGAGTATGGTCGTGGTATACATGCGAA
CGTTGCCGGCCGGGCGCCAAACCTGTGTGACATCGCACGCACGACATGCCAAACCTAAGCTCGGATCATGCTAAACTTGT
GAGTACTCTGTGCAGCACGCGGTTT------------GCCCCAACCGGAAACAG-GACGGTGTTCCAGCCACCTGTTTCC
TTTCACCAAATCATCCAACGCGCACGTGTCCAGACGACGGAACACCCTCAAATCCTGTTCGCGGTTGGCGTGCCGAGAGA
GAGAG--GACAGTGGAGAGAGGAGTCACAGTGACCCCGCACCACACTGATGGACACGCGGAGCCGTGAGCCCGCGACATG
AGAGATGAGAGCCGGCCGGTCAGCCCGCGACGACGCTGCCCACACGAAATCCTCGAGCGCGCGACAGCCACGCCGCAACG
GCACGCCCTTTCCGGTCCATTTCCCGGACCCCGGTCGACACCACGCGC----------GCGCACCTCGCCGGACACGATA
AAACAAGCCGCTTTTCCCTTCTCTTCAGCG--------TATACACGCGCCGCTGGTGTACCAACTCGCGTTTTGCCTTCT
GAAGCCTTCTGAAGCCGAGACGCCACCTGGT--------TGGCTCGCTGCTGCCCGTTGCGCTCCGGCGGCAGCCAAGCC
AAGTGCTCTCGCCCGC----------------CCGCGCGTGCGCGATGACCTTCCCGCTGGTGTGCTACTGCAACGCGGT
GCCCCGGCCCATCGCCGCCGTGTTCAGGTTCCTCCACGCCACCGCGCTGGCCTTCGTGCTCATCCTCTGCCTCCTCGGCC
TCTACGAGTTCCCCTACACCCCCGAGGAGCACGCGGCGCTCATCAGCGGCCCTCGCCGCCGTCCCAACCGGGACGGCGCG
CTTCCGGAGACGGTGAAGCGGCGGCTGCCCCCCGTCGAGTTCGCCGCGCACCTGGCGGAGCGGTCCCTATCGTCGACGTC
TAAGAGGC---CG---------GGTCGCCACGAGGACGAGGAGGAGGACGACGGCGGCGACGCGAGCACGTGCAGGGTGT
GCCTGGAGCGGCTGGAGCCGACGGACGAGGTGCGGCCGCTGGGCAACTGCGCCCACGCCTTCCACAGAGGCTGCATCGAC
CGGTGGATCGACGTCGGCGAGGCGACGTGCCCGCTGTGCCGGTCCAGCCTGCTGCCTCGTCAGCGCGGGGGGCTGCTCGC
CAGTGCCAGGGCCCGGTTCAGCGGCTAGTTCTCCATCCGTACCTGCACGAGGGGCACTTTTGTCATTTCAGCGGCGATGG
TACT-T-----GGTGCAGCAGGCCAATCGCGGGCTGTTCGCGATCAGGACGACTAACCACCGAGCAGTACCTGTGCTAAT
CAATGGGCACGCACGAAATTATTTGACCAACTCCTGGTGAGAAAATATATGGAGCAGTACCGTCCGTGTTTAGGGAAGAG
A-TCGGATCAGTGATCACAATAAAAGATTGGCCCATTGAGAATTTGAGATGGGCTGGCAATGTGTCCTGCGTGTCCGTCA
AGTCCAGTCCAGTCC-----AGTGCACTGTTCTATCTTCTGGAATTGTTGGGTACGAAGCTGCATCCGTGTTGACACGTT
GTTATCGATGATTTAATTTCTTAACGTTGCTCGGCTTCAACTGCATGGAATCGACGTGTAACTAATCATCGTTATCTT-C
CCCGCAAGAAAAGAGACAATCATCATTATATTCACAAACAAAAATGCTACACCTACGAAGAAAACCTACAAACTCTTATG
TAAATTTCCTAACTATAATCTCTCCGCCCCCTGATTTCAACTGGGTGGGTCCCCACCCCCTTATTTCTTTCAACCGAAGC
CTTTACATAAGTTACGTATGAATCAGTACGTAGGTCTAGCATTGTTGATTCACGAATATAGGGCGTTGCCTGGATCGGAT
TTGTAGGCTGGATCGGCGACCCTTGGTGTTGCCTGGTATTTCTCTTTTGCATCCTTCAGATGCTTTTTGTTTGGTCCTTT
TTGTTTTTCTTTTTCTTTTCGTAGTTTCTTTGTTTCAATTTTCTTTGTCTGGACAATCTGTTCCGTTATGACTGTAACTA
GATCATGATTGGCGCGCGTTGCTGCGCCCGTCTCTTTTTTCGATGAACCAATATGAGTTCCCATAGAAGGGTCTCAAAGA
TGGACATGATATTCTGTTAAAATTTGACTGCATGAATAGTTGAAAATCGGTTTACTACTTGGAATCAACATAATTTAGAT
C
>chr2D_1
TACGGGAAGGGGAAACCGAAGCGAAAGCAGTTAACTAGATCTTTTTAAATATGATGACATGCAGTTCTTCAGCATGG-TT
GGAAAAAATATTTCTTAAATATGAGTAACATCATTCTTGTGAATGACTTATTCATCGAAACGGAGGTAGT----------
--ATTGAGTATAGATTGAGATTCAACGCTTTA------------------------------AAAAATGGCACAGAGCGC
CATAGAGTGGTCATAAGGGCGAGCGACGAGCCGACAAGACTATACGTGGACGCTCACAAATTAAATAAGCTGCCGAAACA
TGTGAAAAAGGCAGAAGGAGACGGAGTCCCTGACGAAGCTCGC------CTATAGTCGTGTTACACA------ATGCCAA
CGTTGCCGGGTGGCCGCCAAACCTGCGTGACATCGCACGCACGACATGCCAAACCTAAACTCGGATCATGCTAAACTTGT
GAATACTCTATGCAGCACGCGGTTTGCCGCCGAACAGGCCCCAACCGGAAACAAAGACGGTGTTCCAGCCACCGGTCTCC
TTGCACCAAATCATCGAATGAGCACGTGCCCAGCCG-----ACACCCTCTAATTCTGTTCGCGATTGGCGTGCTGAGAGA
GAGAG--GACAGTGGACGGAGGAGTCACAGTGACCCCGCACCACACTGATGGACACGGGGAGCCGTGAGCCCGTGACATG
AGAG-----------CCGGTCAGCCCGCGACGACGTTGCCCACACGAAATCCTCGAGCGCGCGACAGCCACGCCGCAACG
GCACGCCCTTTCCGGTCCACTTCCTGGACCCCCGGTCGACA----------CACGCGAGCGCACCTCGCCAGACACGATA
AAACAAGCCGCTTTTCC----TCTTCACTTCTTCAGCCTATAGATGCGCCGTTGGTGTACCCACTCGCGTTTTGCCTTGT
GAAGCCCAAACGCGCGCGCACGCACGCACGGCGTCCACCTGGTTGGCTGCTGCCCGTTGCGCTCCGACGGCAGCG-----
AAGTGCTCTCGCCCGCCCGCCCGCTGGCCGCGCCGCGCGTGCGCGATGACCTTCCCGCTGGTGTGCTACTGCAACGCGGT
GCCCCGGCCCATCGCCGCCGTGTTCAGGTTCTTCCACGCCACCGCGCTGGCTTTCGTGCTCATCCTCTGCCTCCTCGGCC
TCTACGAGTTCCCCTACACCCCCGAGGAGCACGCGGCGCTCATCAGCGGCGGCCGCCGCCGTCCCAACCGGGACGGCGCG
CTTCCGGAGACGGTGAAGCAGCGGCTGCCCCCGGTCGAGTTCGCCGTGCACCTGGCGGAGCGGTCGCGATCGTCGACGTC
GAAGAGGC---CGGCACCGGCGGGTCGCCACGACGATGACGACGACGG---------CGACGCGAGTACGTGCAGGGTGT
GCCTGGAGCGGCTGGAGCTGACGGACGAGGTGCGGCCGCTGGGCAACTGCTCCCACGCCTTCCACAGAGGCTGCATCGAC
CGGTGGATCGACGTCGGCGAGGTGACGTGCCCGTTGTGCCGGTCCAACCTGTTGCCTCGTCAGCGCGGGGGGCTGCTCGC
CAATGCCAGGGCCCGGTTCAGC---TAGCTCTCCCTCCGTACGTGCACGGGGGGCAGTTTTGTCATTTCGGGCGCATCCG
TACTGTGGATGGGTGCAGCAGGCCAATCGCGGGCTGCTCGCGATCAGGACGACTAACCACCGAGCAGTACCTGTGCTAAT
CAATGGGCACACGGG-AAATTATTGACCAACTCCTGTTGAGAAAATATATCGAGCAGTACCGTCCGTGTTTAGGGAAGAG
AATCGAATCAGTGATCACAATAAA-GATTGGCCCATTGAGAATTTGAGATGGGCTGGCAATGTGTCCTGC--GTCCGTCA
AG----------TCCAGTCAAGTGCACTGTTCTATCTTCTGGAATTGTTGGGTACGAAGCTGCATCCGTGTTGACACGTT
GTTATCGATGATT-AATTTCTTCTCGTTGCTCAGCTTCAACTGCATGGAATCGACGTGTAACTAATCATCGTTACCTT-C
CCGCCAAGAAAAGAGACAATCATCGTTATATTCACAAA------------------------------------------
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>chr2B_1
TACGGGAAGGGGAAAGCGAAGCGAAAGCGGTTAACTAGATCTTTTTAAACATGATCACATGCAGTTCTTAAGCATGGTTT
GGAAAAAATATTTCTTAAATATGAGTAACATCATTCATATGATTGATTGTATGTTA---ATAGGTATGGTAATCATCAAT
CTATT--GTATAGATTGAGATTCAACGCTTTA------------------------------AAAAATTGCACAGAGCGC
CATAGAGTGGTCATAAGGGTGAGGGACGAGCCGAAGACC--ATATGTGGACGCTCGCAAATTAAATAAGCTGCCTAAACA
TGTGAAAAAGGCGGAAGGAAACAGAGTCCCTGACGAAGCTCGGCTATAGCTATAGTCGTGTTATAT--------TGCCAA
CGTTGCCGGCCGGCCGCCAAACCTGTGTGACATCGCACGCACGACATGCCAAACCTAAACTCGGATCATGCTAAACTTGT
GAATACTCTGTGCAGCACGCGGTTTCCCGCCGAACAAGCCCCAACCGGAAACAA-GACGGTGTTCCAGCCACCGGTTTCC
TTGCACCAAATCATCGAACGCGCACGTGCCCAGACGAC-----ACCCTCTAATCCTGTTCGCGATTGGCGTGCTGAGAGA
GAGAGAGGACAGAGGACAGAGGAGTCACAGTGACCCCGCACCACACTGATGGACACGGGGAGCCGTGAGCCCGTGACATG
AGAGA-----------CGGTCAGCCCGCGACGACGTTGCCCACACGAAATTCTCGAGCGCGCGACAGCCACGCCGCAACG
GCACACCCTTTCCGGTCCATTTCCTGGACCCCGGTCGACGCACACACGCACCACGCGAGCGCACCTCGCCAGACACGATA
AAACAAGCCGCTTTTCC----TCTTCAGCG--------TATAGACGCGCGGCTGGTGTACCAACTCGCGTTTTGCCTTCT
GAA---------------------------GCGTCCACCTGGTTGGCCGCTGCCTGTTGCGCTCCGGCGGCAGCG-----
AAGTGCTCTCGCCCGC----------------------------GATGACCTTCCCGCTGGTGTGCTACTGCAACGCGGT
GCCCCGGCCCATCGCCGCCGTGTTCAGGTTCTTCCACGCCACCGCGCTGGCTTTCGTGCTCATACTCTGCCTCCTCGGCC
TCTACGAGTTCCCCTACACCCCCGAGGAGCACGCGGCACTCATCAGCGGCCGCCGCCGCCGTCCCAACCGGGACGGCACG
CTTCCGGAGACGGTGAAGCAGCGGCTGCCCCCCGTCGAGTTCGTCGTGCACCTGGCGGAGCGGTCGCGATCGTCGACGTC
TAAGAGCAGGGCGGCGCCGGCCGGTCGCCACGACGACGA------------------CGACGCGAGTACGTGCAGGGTGT
GCCTGGAGCGGCTGGAGCTGACGGACGAGGTGCGGCCGCTGGGCAACTGCTCCCACGCCTTCCACAGAGGCTGCATCGAC
CGGTGGATCGACATCGGCGAGGTGACGTGCCCGCTGTGCCGGTCCAACCTGCTGCCTCGTCAGCGCGGGGGGCTGCTCGC
CAATGCCAGGGCCCGGTTCAGC---TAGTTCTCCCTCCGTACCTGCGC-AGGGGCAGTTTTGTCATTTCAGGCGCGATGG
TACT-TGGATGGGTGCAGCAGGCCTACCGAGGGCTGTTCGCGATCAGGCCGA-TAACCACCGAGCAGTACCTGTGCTAAT
CAATGGGCACACAGAAAAATTCTTGACCAACTCCTGTTGAGAAAATATATCAAGCAGTACCGTCCGTGTTTAGGGAAGAG
A-TTGAATCAGTGATCACAATAAA-GACTGGGCGATTGAGAATTCGGGATGGGCTGGCAATGTGTCCTGC--ATCCGTCA
AA----------TCC-----AGTGCACTGTTCTATCTTCTGGAATTGTTGGGTACGAAGATGCATCGGTGTTGACACGTT
GTTATCGATGATT-AATTTCTTCTCGTTGCTCAGCTTCAACTGCATGGAATCGACGTGTAACTAATCATCGTCACCTTCC
CCCCCAAGAAAAGAGACAATCATCATTATATTCACAAA------------------------------------------
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>SNPs
---S----------------------S-----------S-------------------------------SS--------
--SS-----------------------------------------------------S-------------------S--
-S--------------S--------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S-------------S-
----------S--S----------------------------S--------------------S--------------S-
--------S-------------------------------S------------S-SSSSSSSS-S-SSSSSSS----S--
-------------S--------------------------------------------S---------------------
--S--------------------------------------------------S-------------------S------
--S------------S------------S---------SSS--------S-------------S---------S------
----------------S----------------------------------------S---------------S------
-----SSSSSSSSSS--------------------S--------------------------------------------
------------------------S--------------S-SSSSSSS----------------------S---------
-----------------SSSS---------------------S-------------------------------------
------SSSSSSS--SSSS----SSS-SS-S-----------S-S-----------------------------SSSSSS
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-------------------------------S-------------------S----------------------------
---------------------------------------------------SS---------------------------
-------------------S--------------------------S------------------S-S------------
---------------------------------S-----S--S--S-SSSSSSSSSS---------S-------------
------------------S-------------------------------S-----------------------------
----------------------S-----------------------S---------------------------------
--S-------------------SSS---------S---------------------S--------------SS-------
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----------S--S----S-SS--------------S-------------S-----------------------------
-----S------------------S---------------------------------------------SS--------
--SSSSSSSSSS--------------------------------------------------------------------
-------------S--------SS--------S-----------------------------------------S-----
---S----------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S
>forward_304
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--------------------------------------------CGTGGACGCTCGCAAATTAG----------------
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>reverse_2340
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-------------------CCCTTGGTGTTGCCTGGTAT-----------------------------------------
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