Multiple sequence alignment - TraesCS2A01G394400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G394400 chr2A 100.000 2294 0 0 1 2294 644249706 644247413 0.000000e+00 4237.0
1 TraesCS2A01G394400 chr2B 87.477 2220 190 44 67 2248 587243772 587241603 0.000000e+00 2479.0
2 TraesCS2A01G394400 chr2B 76.159 302 52 10 327 611 186381752 186382050 8.540000e-30 141.0
3 TraesCS2A01G394400 chr2B 77.723 202 37 7 372 569 147493930 147493733 1.440000e-22 117.0
4 TraesCS2A01G394400 chr2D 89.894 1514 85 34 657 2138 499728171 499726694 0.000000e+00 1886.0
5 TraesCS2A01G394400 chr2D 79.961 519 69 18 1720 2234 499238208 499237721 1.300000e-92 350.0
6 TraesCS2A01G394400 chr2D 93.750 96 5 1 2199 2294 499726675 499726581 2.380000e-30 143.0
7 TraesCS2A01G394400 chr7D 83.152 184 25 5 360 541 26790308 26790487 1.820000e-36 163.0
8 TraesCS2A01G394400 chr7D 94.872 39 1 1 328 365 428039275 428039237 2.460000e-05 60.2
9 TraesCS2A01G394400 chr4A 76.589 299 55 7 328 611 717722148 717722446 1.420000e-32 150.0
10 TraesCS2A01G394400 chr4A 79.894 189 34 4 360 546 89677945 89678131 3.980000e-28 135.0
11 TraesCS2A01G394400 chr1D 77.821 257 43 10 327 579 427614808 427614562 1.840000e-31 147.0
12 TraesCS2A01G394400 chr4D 75.920 299 56 11 327 611 248956571 248956275 3.070000e-29 139.0
13 TraesCS2A01G394400 chr4D 80.368 163 28 4 389 549 62483712 62483552 1.110000e-23 121.0
14 TraesCS2A01G394400 chr4D 83.333 96 16 0 516 611 43355489 43355394 3.140000e-14 89.8
15 TraesCS2A01G394400 chr4B 80.645 186 30 5 367 549 22230885 22230703 3.070000e-29 139.0
16 TraesCS2A01G394400 chr3B 80.000 190 36 2 361 549 440515227 440515039 3.070000e-29 139.0
17 TraesCS2A01G394400 chr7B 75.920 299 47 15 329 611 531684044 531683755 1.850000e-26 130.0
18 TraesCS2A01G394400 chr1B 79.474 190 31 6 360 546 136921013 136921197 6.650000e-26 128.0
19 TraesCS2A01G394400 chr6D 76.562 256 45 13 358 608 445169301 445169546 2.390000e-25 126.0
20 TraesCS2A01G394400 chr7A 73.152 257 57 9 361 611 71146641 71146891 5.250000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G394400 chr2A 644247413 644249706 2293 True 4237.0 4237 100.000 1 2294 1 chr2A.!!$R1 2293
1 TraesCS2A01G394400 chr2B 587241603 587243772 2169 True 2479.0 2479 87.477 67 2248 1 chr2B.!!$R2 2181
2 TraesCS2A01G394400 chr2D 499726581 499728171 1590 True 1014.5 1886 91.822 657 2294 2 chr2D.!!$R2 1637

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
424 435 0.10212 GAGCACATCCGAGAGACTGG 59.898 60.0 0.0 0.0 0.0 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1573 1610 0.721154 GATGCACGTTTGATCGCTGA 59.279 50.0 0.0 0.0 0.0 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.485124 GAGGGGGCCTTTATTTGTGG 58.515 55.000 0.84 0.00 31.76 4.17
20 21 1.006639 GAGGGGGCCTTTATTTGTGGA 59.993 52.381 0.84 0.00 31.76 4.02
21 22 1.007118 AGGGGGCCTTTATTTGTGGAG 59.993 52.381 0.84 0.00 0.00 3.86
22 23 1.485124 GGGGCCTTTATTTGTGGAGG 58.515 55.000 0.84 0.00 0.00 4.30
23 24 1.485124 GGGCCTTTATTTGTGGAGGG 58.515 55.000 0.84 0.00 0.00 4.30
24 25 1.006639 GGGCCTTTATTTGTGGAGGGA 59.993 52.381 0.84 0.00 0.00 4.20
25 26 2.359249 GGGCCTTTATTTGTGGAGGGAT 60.359 50.000 0.84 0.00 0.00 3.85
26 27 3.117284 GGGCCTTTATTTGTGGAGGGATA 60.117 47.826 0.84 0.00 0.00 2.59
27 28 3.889538 GGCCTTTATTTGTGGAGGGATAC 59.110 47.826 0.00 0.00 0.00 2.24
28 29 3.564225 GCCTTTATTTGTGGAGGGATACG 59.436 47.826 0.00 0.00 37.60 3.06
29 30 3.564225 CCTTTATTTGTGGAGGGATACGC 59.436 47.826 0.00 0.00 37.60 4.42
30 31 2.922740 TATTTGTGGAGGGATACGCC 57.077 50.000 0.00 0.00 37.60 5.68
31 32 1.213296 ATTTGTGGAGGGATACGCCT 58.787 50.000 0.00 0.00 36.66 5.52
32 33 0.988832 TTTGTGGAGGGATACGCCTT 59.011 50.000 0.00 0.00 36.66 4.35
33 34 0.539986 TTGTGGAGGGATACGCCTTC 59.460 55.000 0.00 0.00 41.86 3.46
34 35 0.616395 TGTGGAGGGATACGCCTTCA 60.616 55.000 0.00 0.00 44.28 3.02
35 36 0.539986 GTGGAGGGATACGCCTTCAA 59.460 55.000 0.00 0.00 44.28 2.69
36 37 1.141053 GTGGAGGGATACGCCTTCAAT 59.859 52.381 0.00 0.00 44.28 2.57
37 38 1.140852 TGGAGGGATACGCCTTCAATG 59.859 52.381 0.00 0.00 44.28 2.82
38 39 1.230324 GAGGGATACGCCTTCAATGC 58.770 55.000 0.00 0.00 42.16 3.56
44 45 4.751539 CGCCTTCAATGCGTCAAG 57.248 55.556 0.00 0.00 46.59 3.02
45 46 1.135315 CGCCTTCAATGCGTCAAGG 59.865 57.895 10.95 10.95 46.59 3.61
46 47 1.508088 GCCTTCAATGCGTCAAGGG 59.492 57.895 15.31 2.43 37.71 3.95
47 48 0.960364 GCCTTCAATGCGTCAAGGGA 60.960 55.000 15.31 0.00 37.71 4.20
48 49 1.755179 CCTTCAATGCGTCAAGGGAT 58.245 50.000 8.26 0.00 34.13 3.85
49 50 1.672881 CCTTCAATGCGTCAAGGGATC 59.327 52.381 8.26 0.00 34.13 3.36
50 51 2.358957 CTTCAATGCGTCAAGGGATCA 58.641 47.619 0.00 0.00 0.00 2.92
51 52 2.488204 TCAATGCGTCAAGGGATCAA 57.512 45.000 0.00 0.00 0.00 2.57
52 53 2.358957 TCAATGCGTCAAGGGATCAAG 58.641 47.619 0.00 0.00 0.00 3.02
53 54 2.027285 TCAATGCGTCAAGGGATCAAGA 60.027 45.455 0.00 0.00 0.00 3.02
54 55 2.029838 ATGCGTCAAGGGATCAAGAC 57.970 50.000 0.00 0.00 0.00 3.01
55 56 0.976641 TGCGTCAAGGGATCAAGACT 59.023 50.000 0.00 0.00 0.00 3.24
56 57 1.347707 TGCGTCAAGGGATCAAGACTT 59.652 47.619 0.00 0.00 0.00 3.01
57 58 2.003301 GCGTCAAGGGATCAAGACTTC 58.997 52.381 0.00 0.00 0.00 3.01
58 59 2.263077 CGTCAAGGGATCAAGACTTCG 58.737 52.381 0.00 0.00 0.00 3.79
59 60 2.094700 CGTCAAGGGATCAAGACTTCGA 60.095 50.000 0.00 0.00 0.00 3.71
60 61 3.614150 CGTCAAGGGATCAAGACTTCGAA 60.614 47.826 0.00 0.00 0.00 3.71
61 62 4.315803 GTCAAGGGATCAAGACTTCGAAA 58.684 43.478 0.00 0.00 0.00 3.46
62 63 4.152580 GTCAAGGGATCAAGACTTCGAAAC 59.847 45.833 0.00 0.00 0.00 2.78
63 64 4.040461 TCAAGGGATCAAGACTTCGAAACT 59.960 41.667 0.00 0.00 0.00 2.66
64 65 4.195225 AGGGATCAAGACTTCGAAACTC 57.805 45.455 0.00 0.00 0.00 3.01
65 66 3.835395 AGGGATCAAGACTTCGAAACTCT 59.165 43.478 0.00 0.00 0.00 3.24
66 67 4.284746 AGGGATCAAGACTTCGAAACTCTT 59.715 41.667 10.60 10.60 0.00 2.85
67 68 5.480772 AGGGATCAAGACTTCGAAACTCTTA 59.519 40.000 14.43 6.96 0.00 2.10
68 69 5.577554 GGGATCAAGACTTCGAAACTCTTAC 59.422 44.000 14.43 10.30 0.00 2.34
69 70 5.577554 GGATCAAGACTTCGAAACTCTTACC 59.422 44.000 14.43 13.78 0.00 2.85
70 71 5.786264 TCAAGACTTCGAAACTCTTACCT 57.214 39.130 14.43 0.00 0.00 3.08
71 72 6.158023 TCAAGACTTCGAAACTCTTACCTT 57.842 37.500 14.43 1.62 0.00 3.50
72 73 5.983720 TCAAGACTTCGAAACTCTTACCTTG 59.016 40.000 14.43 10.96 0.00 3.61
73 74 5.786264 AGACTTCGAAACTCTTACCTTGA 57.214 39.130 0.00 0.00 0.00 3.02
74 75 5.774630 AGACTTCGAAACTCTTACCTTGAG 58.225 41.667 0.00 0.00 37.55 3.02
75 76 5.535406 AGACTTCGAAACTCTTACCTTGAGA 59.465 40.000 0.00 0.00 35.66 3.27
76 77 5.774630 ACTTCGAAACTCTTACCTTGAGAG 58.225 41.667 0.00 0.00 44.86 3.20
142 143 5.300286 CCCCTCAACATCATGAATTAAGGAC 59.700 44.000 12.10 0.00 0.00 3.85
151 152 3.914426 TGAATTAAGGACTCCTGCCTC 57.086 47.619 0.00 0.00 33.76 4.70
179 180 1.346068 GAGGGATCCACATGACCTAGC 59.654 57.143 15.23 0.00 0.00 3.42
184 185 1.489481 TCCACATGACCTAGCAGGAG 58.511 55.000 0.00 0.00 37.67 3.69
200 201 4.163839 AGCAGGAGAGATTGCAGTAAGAAT 59.836 41.667 0.00 0.00 0.00 2.40
228 229 4.935885 ATTGTGATGCTTCGTCTTTCTC 57.064 40.909 0.00 0.00 0.00 2.87
271 272 6.833041 TGACCCAGTGTTATTCTTGTTCTAA 58.167 36.000 0.00 0.00 0.00 2.10
372 375 3.132824 AGTCGCTCACATACATTCATCCA 59.867 43.478 0.00 0.00 0.00 3.41
381 384 6.652062 TCACATACATTCATCCATATGAGCAC 59.348 38.462 3.65 0.00 42.97 4.40
387 390 4.028993 TCATCCATATGAGCACATGCAT 57.971 40.909 6.91 0.00 45.16 3.96
399 402 1.399440 CACATGCATGCACACTCTACC 59.601 52.381 25.37 0.00 0.00 3.18
411 422 2.292257 ACACTCTACCCCTATGAGCACA 60.292 50.000 0.00 0.00 0.00 4.57
415 426 1.273606 CTACCCCTATGAGCACATCCG 59.726 57.143 0.00 0.00 37.87 4.18
424 435 0.102120 GAGCACATCCGAGAGACTGG 59.898 60.000 0.00 0.00 0.00 4.00
425 436 0.323816 AGCACATCCGAGAGACTGGA 60.324 55.000 0.00 0.00 38.95 3.86
438 449 2.101582 GAGACTGGACCGACATAGCATT 59.898 50.000 0.00 0.00 0.00 3.56
446 457 4.576463 GGACCGACATAGCATTTTGAGATT 59.424 41.667 0.00 0.00 0.00 2.40
462 473 9.840427 ATTTTGAGATTTTATGAAGTTACCACG 57.160 29.630 0.00 0.00 0.00 4.94
470 481 0.320160 GAAGTTACCACGGACGCCTT 60.320 55.000 0.00 0.00 0.00 4.35
482 493 4.717629 CGCCTTGCAGTCGACGGA 62.718 66.667 20.25 8.64 0.00 4.69
485 496 1.860078 CCTTGCAGTCGACGGAAAC 59.140 57.895 20.25 2.37 0.00 2.78
486 497 0.878523 CCTTGCAGTCGACGGAAACA 60.879 55.000 20.25 5.16 0.00 2.83
488 499 1.531149 CTTGCAGTCGACGGAAACATT 59.469 47.619 20.25 0.00 0.00 2.71
502 513 2.668144 AACATTTCCTCCCACCGAAA 57.332 45.000 0.00 0.00 32.82 3.46
503 514 2.668144 ACATTTCCTCCCACCGAAAA 57.332 45.000 0.00 0.00 32.08 2.29
534 545 9.733556 TCACTAAAAGGCTGAAATAAATACAGA 57.266 29.630 0.00 0.00 34.07 3.41
567 578 6.539464 CGAGTACTAATGTCAAGTCTAGGACT 59.461 42.308 0.00 0.00 45.64 3.85
584 595 2.552373 GGACTTAAACCCTGGTGGACTG 60.552 54.545 0.00 0.00 38.00 3.51
588 599 2.069165 AAACCCTGGTGGACTGAGGC 62.069 60.000 0.00 0.00 38.00 4.70
614 625 0.535335 TGTCCTCCTAACCATCACGC 59.465 55.000 0.00 0.00 0.00 5.34
616 627 2.029623 GTCCTCCTAACCATCACGCTA 58.970 52.381 0.00 0.00 0.00 4.26
674 687 4.739228 TGCACGATTGTTCATTTTCAGTTG 59.261 37.500 0.00 0.00 0.00 3.16
677 690 6.086765 GCACGATTGTTCATTTTCAGTTGTAG 59.913 38.462 0.00 0.00 0.00 2.74
697 710 2.159057 AGTTTTCCAAGCCTTGTTGCAG 60.159 45.455 3.37 0.00 0.00 4.41
703 716 1.134729 CAAGCCTTGTTGCAGGTTTGT 60.135 47.619 10.10 0.00 45.52 2.83
817 830 4.729458 GCTCTCTAGATCGACAGACACAAC 60.729 50.000 0.00 0.00 0.00 3.32
847 860 3.728718 CACAACACAATAAACCGTCAAGC 59.271 43.478 0.00 0.00 0.00 4.01
893 907 5.245075 CCTTTTGGCTTCACCTATAAAACCA 59.755 40.000 0.00 0.00 40.22 3.67
894 908 6.239458 CCTTTTGGCTTCACCTATAAAACCAA 60.239 38.462 0.00 0.00 40.22 3.67
903 917 5.702209 TCACCTATAAAACCAAGAACCGAAC 59.298 40.000 0.00 0.00 0.00 3.95
944 960 6.537660 CGATACGAAAAGAAGGGAAAAGGTAT 59.462 38.462 0.00 0.00 0.00 2.73
968 984 3.622455 GCCATTTCTACCCTTAGCACTGT 60.622 47.826 0.00 0.00 0.00 3.55
979 995 2.238942 TAGCACTGTTATCATGGCCG 57.761 50.000 0.00 0.00 0.00 6.13
1375 1391 5.211454 CAAAATAATGAAGTGCACGTGTCA 58.789 37.500 18.38 15.94 0.00 3.58
1391 1414 6.017325 CACGTGTCATGTGTGATGAATAAAG 58.983 40.000 15.83 0.00 36.60 1.85
1392 1415 5.700832 ACGTGTCATGTGTGATGAATAAAGT 59.299 36.000 0.00 0.00 36.60 2.66
1393 1416 6.128553 ACGTGTCATGTGTGATGAATAAAGTC 60.129 38.462 0.00 0.00 36.60 3.01
1394 1417 6.091305 CGTGTCATGTGTGATGAATAAAGTCT 59.909 38.462 0.00 0.00 36.60 3.24
1395 1418 7.239271 GTGTCATGTGTGATGAATAAAGTCTG 58.761 38.462 0.00 0.00 36.60 3.51
1396 1419 7.118245 GTGTCATGTGTGATGAATAAAGTCTGA 59.882 37.037 0.00 0.00 36.60 3.27
1398 1421 7.959651 GTCATGTGTGATGAATAAAGTCTGAAC 59.040 37.037 0.00 0.00 36.60 3.18
1399 1422 6.801539 TGTGTGATGAATAAAGTCTGAACC 57.198 37.500 0.00 0.00 0.00 3.62
1400 1423 6.295249 TGTGTGATGAATAAAGTCTGAACCA 58.705 36.000 0.00 0.00 0.00 3.67
1401 1424 6.204688 TGTGTGATGAATAAAGTCTGAACCAC 59.795 38.462 0.00 0.00 0.00 4.16
1402 1425 6.428159 GTGTGATGAATAAAGTCTGAACCACT 59.572 38.462 0.00 0.00 0.00 4.00
1403 1426 6.427853 TGTGATGAATAAAGTCTGAACCACTG 59.572 38.462 0.00 0.00 0.00 3.66
1404 1427 6.650807 GTGATGAATAAAGTCTGAACCACTGA 59.349 38.462 0.00 0.00 0.00 3.41
1405 1428 7.173218 GTGATGAATAAAGTCTGAACCACTGAA 59.827 37.037 0.00 0.00 0.00 3.02
1406 1429 7.884877 TGATGAATAAAGTCTGAACCACTGAAT 59.115 33.333 0.00 0.00 0.00 2.57
1407 1430 9.383519 GATGAATAAAGTCTGAACCACTGAATA 57.616 33.333 0.00 0.00 0.00 1.75
1408 1431 9.911788 ATGAATAAAGTCTGAACCACTGAATAT 57.088 29.630 0.00 0.00 0.00 1.28
1440 1463 2.119457 CTGTTTCGGCAGTTCAAAAGC 58.881 47.619 0.00 0.00 0.00 3.51
1445 1468 0.586319 CGGCAGTTCAAAAGCGAGAA 59.414 50.000 0.00 0.00 0.00 2.87
1450 1473 3.248602 GCAGTTCAAAAGCGAGAAAGAGA 59.751 43.478 0.00 0.00 0.00 3.10
1451 1474 4.083590 GCAGTTCAAAAGCGAGAAAGAGAT 60.084 41.667 0.00 0.00 0.00 2.75
1452 1475 5.120830 GCAGTTCAAAAGCGAGAAAGAGATA 59.879 40.000 0.00 0.00 0.00 1.98
1486 1512 1.317431 GCCACATTCCAGCTGCATGA 61.317 55.000 23.86 8.76 0.00 3.07
1487 1513 1.399714 CCACATTCCAGCTGCATGAT 58.600 50.000 23.86 10.49 0.00 2.45
1488 1514 2.578786 CCACATTCCAGCTGCATGATA 58.421 47.619 23.86 4.26 0.00 2.15
1489 1515 2.292569 CCACATTCCAGCTGCATGATAC 59.707 50.000 23.86 0.00 0.00 2.24
1490 1516 3.211865 CACATTCCAGCTGCATGATACT 58.788 45.455 23.86 5.49 0.00 2.12
1491 1517 3.250280 CACATTCCAGCTGCATGATACTC 59.750 47.826 23.86 0.00 0.00 2.59
1492 1518 2.627515 TTCCAGCTGCATGATACTCC 57.372 50.000 8.66 0.00 0.00 3.85
1493 1519 1.798626 TCCAGCTGCATGATACTCCT 58.201 50.000 8.66 0.00 0.00 3.69
1494 1520 2.962859 TCCAGCTGCATGATACTCCTA 58.037 47.619 8.66 0.00 0.00 2.94
1495 1521 2.630098 TCCAGCTGCATGATACTCCTAC 59.370 50.000 8.66 0.00 0.00 3.18
1496 1522 2.366590 CCAGCTGCATGATACTCCTACA 59.633 50.000 8.66 0.00 0.00 2.74
1497 1523 3.554544 CCAGCTGCATGATACTCCTACAG 60.555 52.174 8.66 0.00 0.00 2.74
1498 1524 3.069300 CAGCTGCATGATACTCCTACAGT 59.931 47.826 0.00 0.00 39.41 3.55
1499 1525 4.279420 CAGCTGCATGATACTCCTACAGTA 59.721 45.833 0.00 0.00 42.09 2.74
1500 1526 4.279671 AGCTGCATGATACTCCTACAGTAC 59.720 45.833 1.02 0.00 40.60 2.73
1501 1527 4.279671 GCTGCATGATACTCCTACAGTACT 59.720 45.833 0.00 0.00 40.60 2.73
1502 1528 5.767269 CTGCATGATACTCCTACAGTACTG 58.233 45.833 21.44 21.44 40.60 2.74
1503 1529 5.201243 TGCATGATACTCCTACAGTACTGT 58.799 41.667 30.13 30.13 46.87 3.55
1516 1542 8.023128 TCCTACAGTACTGTAATTAACAACGTC 58.977 37.037 30.31 0.00 44.47 4.34
1525 1551 5.467399 TGTAATTAACAACGTCTTGTCCAGG 59.533 40.000 0.00 0.00 39.88 4.45
1536 1562 5.221661 ACGTCTTGTCCAGGATAAAAGTTCT 60.222 40.000 0.00 0.00 0.00 3.01
1539 1565 7.222999 CGTCTTGTCCAGGATAAAAGTTCTATC 59.777 40.741 0.00 0.00 0.00 2.08
1540 1566 8.041323 GTCTTGTCCAGGATAAAAGTTCTATCA 58.959 37.037 0.00 0.00 0.00 2.15
1541 1567 8.260818 TCTTGTCCAGGATAAAAGTTCTATCAG 58.739 37.037 0.00 0.00 0.00 2.90
1542 1568 7.496346 TGTCCAGGATAAAAGTTCTATCAGT 57.504 36.000 0.00 0.00 0.00 3.41
1543 1569 7.556844 TGTCCAGGATAAAAGTTCTATCAGTC 58.443 38.462 0.00 0.00 0.00 3.51
1545 1571 8.261522 GTCCAGGATAAAAGTTCTATCAGTCTT 58.738 37.037 0.00 0.00 0.00 3.01
1548 1574 9.757227 CAGGATAAAAGTTCTATCAGTCTTAGG 57.243 37.037 0.00 0.00 0.00 2.69
1551 1577 9.471084 GATAAAAGTTCTATCAGTCTTAGGCTC 57.529 37.037 0.00 0.00 0.00 4.70
1552 1578 7.489239 AAAAGTTCTATCAGTCTTAGGCTCT 57.511 36.000 0.00 0.00 0.00 4.09
1695 1732 0.033601 AGCCCAGGTGACACAAACAA 60.034 50.000 8.08 0.00 0.00 2.83
1700 1749 2.416701 CCAGGTGACACAAACAACAACC 60.417 50.000 8.08 0.00 0.00 3.77
1768 1820 8.416329 GGACCTTGATTTCTGCATATAAAACAT 58.584 33.333 0.00 0.00 0.00 2.71
1801 1853 2.124320 ACACTTGCCAGCAACCGT 60.124 55.556 0.00 0.00 0.00 4.83
1817 1869 1.877443 ACCGTATTTGTCAGCGCTTTT 59.123 42.857 7.50 0.00 0.00 2.27
1818 1870 3.068560 ACCGTATTTGTCAGCGCTTTTA 58.931 40.909 7.50 0.00 0.00 1.52
1842 1894 2.695147 TGACATGTCCGTATGATGAGCT 59.305 45.455 22.85 0.00 0.00 4.09
1843 1895 3.888930 TGACATGTCCGTATGATGAGCTA 59.111 43.478 22.85 0.00 0.00 3.32
1851 1903 6.183360 TGTCCGTATGATGAGCTATTTTCAGA 60.183 38.462 0.00 0.00 0.00 3.27
1864 1916 5.991606 GCTATTTTCAGAAAGGCTTTTGGTT 59.008 36.000 14.66 0.00 0.00 3.67
1873 1925 5.946377 AGAAAGGCTTTTGGTTATACCTGAG 59.054 40.000 14.66 0.00 39.58 3.35
1886 1938 1.676967 CCTGAGACCTTGGCTTGCC 60.677 63.158 4.43 4.43 0.00 4.52
1892 1944 3.071602 TGAGACCTTGGCTTGCCTATATC 59.928 47.826 13.18 6.02 0.00 1.63
1893 1945 3.048600 AGACCTTGGCTTGCCTATATCA 58.951 45.455 13.18 0.00 0.00 2.15
1908 1960 5.239525 GCCTATATCAAGCGAGTCCATTTTT 59.760 40.000 0.00 0.00 0.00 1.94
1952 2004 0.610174 AGCTCGATGACAGCCTTGAA 59.390 50.000 0.00 0.00 37.63 2.69
1967 2019 4.523943 AGCCTTGAATACTGCATTTGACAA 59.476 37.500 0.00 0.00 0.00 3.18
1974 2026 8.523523 TGAATACTGCATTTGACAAATCTTTG 57.476 30.769 10.52 2.89 43.62 2.77
2001 2053 3.988379 TCGGCATCAAAATAGCAATCC 57.012 42.857 0.00 0.00 0.00 3.01
2158 2210 9.638176 AGAGCCTTTGAATATCATTCAAACTAT 57.362 29.630 18.43 11.96 41.74 2.12
2178 2230 9.563748 AAACTATGTAGCTTTAAACCAACAGTA 57.436 29.630 0.00 0.00 0.00 2.74
2183 2235 7.878036 TGTAGCTTTAAACCAACAGTAATTCC 58.122 34.615 0.00 0.00 0.00 3.01
2264 2316 9.978044 ACCGTATTATAGAAGAATTAACTGTCC 57.022 33.333 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.006639 TCCACAAATAAAGGCCCCCTC 59.993 52.381 0.00 0.00 30.89 4.30
2 3 1.485124 CTCCACAAATAAAGGCCCCC 58.515 55.000 0.00 0.00 0.00 5.40
3 4 1.485124 CCTCCACAAATAAAGGCCCC 58.515 55.000 0.00 0.00 0.00 5.80
4 5 1.006639 TCCCTCCACAAATAAAGGCCC 59.993 52.381 0.00 0.00 0.00 5.80
5 6 2.525105 TCCCTCCACAAATAAAGGCC 57.475 50.000 0.00 0.00 0.00 5.19
7 8 3.564225 GCGTATCCCTCCACAAATAAAGG 59.436 47.826 0.00 0.00 0.00 3.11
8 9 3.564225 GGCGTATCCCTCCACAAATAAAG 59.436 47.826 0.00 0.00 0.00 1.85
10 11 2.775384 AGGCGTATCCCTCCACAAATAA 59.225 45.455 0.00 0.00 34.51 1.40
11 12 2.404559 AGGCGTATCCCTCCACAAATA 58.595 47.619 0.00 0.00 34.51 1.40
12 13 1.213296 AGGCGTATCCCTCCACAAAT 58.787 50.000 0.00 0.00 34.51 2.32
13 14 0.988832 AAGGCGTATCCCTCCACAAA 59.011 50.000 0.00 0.00 32.93 2.83
14 15 0.539986 GAAGGCGTATCCCTCCACAA 59.460 55.000 0.00 0.00 32.93 3.33
15 16 0.616395 TGAAGGCGTATCCCTCCACA 60.616 55.000 0.00 0.00 32.93 4.17
16 17 0.539986 TTGAAGGCGTATCCCTCCAC 59.460 55.000 0.00 0.00 32.93 4.02
17 18 1.140852 CATTGAAGGCGTATCCCTCCA 59.859 52.381 0.00 0.00 32.93 3.86
18 19 1.884235 CATTGAAGGCGTATCCCTCC 58.116 55.000 0.00 0.00 32.93 4.30
19 20 1.230324 GCATTGAAGGCGTATCCCTC 58.770 55.000 0.00 0.00 32.93 4.30
20 21 3.403936 GCATTGAAGGCGTATCCCT 57.596 52.632 0.00 0.00 36.58 4.20
28 29 0.960364 TCCCTTGACGCATTGAAGGC 60.960 55.000 0.00 0.00 35.79 4.35
29 30 1.672881 GATCCCTTGACGCATTGAAGG 59.327 52.381 0.00 0.00 36.73 3.46
30 31 2.358957 TGATCCCTTGACGCATTGAAG 58.641 47.619 0.00 0.00 0.00 3.02
31 32 2.488204 TGATCCCTTGACGCATTGAA 57.512 45.000 0.00 0.00 0.00 2.69
32 33 2.027285 TCTTGATCCCTTGACGCATTGA 60.027 45.455 0.00 0.00 0.00 2.57
33 34 2.096496 GTCTTGATCCCTTGACGCATTG 59.904 50.000 0.00 0.00 0.00 2.82
34 35 2.026822 AGTCTTGATCCCTTGACGCATT 60.027 45.455 0.00 0.00 34.92 3.56
35 36 1.556911 AGTCTTGATCCCTTGACGCAT 59.443 47.619 0.00 0.00 34.92 4.73
36 37 0.976641 AGTCTTGATCCCTTGACGCA 59.023 50.000 0.00 0.00 34.92 5.24
37 38 2.003301 GAAGTCTTGATCCCTTGACGC 58.997 52.381 0.00 0.00 34.92 5.19
38 39 2.094700 TCGAAGTCTTGATCCCTTGACG 60.095 50.000 0.00 0.00 34.92 4.35
39 40 3.594603 TCGAAGTCTTGATCCCTTGAC 57.405 47.619 0.00 0.00 0.00 3.18
40 41 4.040461 AGTTTCGAAGTCTTGATCCCTTGA 59.960 41.667 0.00 0.00 0.00 3.02
41 42 4.319177 AGTTTCGAAGTCTTGATCCCTTG 58.681 43.478 0.00 0.00 0.00 3.61
42 43 4.284746 AGAGTTTCGAAGTCTTGATCCCTT 59.715 41.667 0.00 0.00 37.96 3.95
43 44 3.835395 AGAGTTTCGAAGTCTTGATCCCT 59.165 43.478 0.00 0.00 37.96 4.20
44 45 4.195225 AGAGTTTCGAAGTCTTGATCCC 57.805 45.455 0.00 0.00 37.96 3.85
51 52 5.535406 TCTCAAGGTAAGAGTTTCGAAGTCT 59.465 40.000 0.00 1.97 42.89 3.24
52 53 5.770417 TCTCAAGGTAAGAGTTTCGAAGTC 58.230 41.667 0.00 0.00 34.73 3.01
53 54 5.535406 TCTCTCAAGGTAAGAGTTTCGAAGT 59.465 40.000 0.00 0.00 40.92 3.01
54 55 6.015027 TCTCTCAAGGTAAGAGTTTCGAAG 57.985 41.667 0.00 0.00 40.92 3.79
55 56 6.591750 ATCTCTCAAGGTAAGAGTTTCGAA 57.408 37.500 0.00 0.00 40.92 3.71
56 57 7.698506 TTATCTCTCAAGGTAAGAGTTTCGA 57.301 36.000 0.51 0.00 40.92 3.71
57 58 7.813148 TGTTTATCTCTCAAGGTAAGAGTTTCG 59.187 37.037 0.51 0.00 40.92 3.46
58 59 9.145865 CTGTTTATCTCTCAAGGTAAGAGTTTC 57.854 37.037 0.51 0.00 40.92 2.78
59 60 8.652290 ACTGTTTATCTCTCAAGGTAAGAGTTT 58.348 33.333 0.51 0.00 40.92 2.66
60 61 8.196378 ACTGTTTATCTCTCAAGGTAAGAGTT 57.804 34.615 0.51 0.00 40.92 3.01
61 62 7.784470 ACTGTTTATCTCTCAAGGTAAGAGT 57.216 36.000 0.51 0.00 40.92 3.24
117 118 4.586001 CCTTAATTCATGATGTTGAGGGGG 59.414 45.833 17.61 2.45 0.00 5.40
142 143 3.406200 CCACTGGGGAGGCAGGAG 61.406 72.222 0.00 0.00 40.01 3.69
151 152 2.042762 TGGATCCCTCCACTGGGG 59.957 66.667 9.90 0.00 46.95 4.96
179 180 4.272991 GCATTCTTACTGCAATCTCTCCTG 59.727 45.833 0.00 0.00 39.46 3.86
200 201 4.395854 AGACGAAGCATCACAATTATTGCA 59.604 37.500 4.68 0.00 37.56 4.08
204 205 6.595326 TGAGAAAGACGAAGCATCACAATTAT 59.405 34.615 0.00 0.00 0.00 1.28
210 211 3.579709 TCTGAGAAAGACGAAGCATCAC 58.420 45.455 0.00 0.00 0.00 3.06
249 250 7.228706 CACTTTAGAACAAGAATAACACTGGGT 59.771 37.037 0.00 0.00 0.00 4.51
251 252 8.154649 ACACTTTAGAACAAGAATAACACTGG 57.845 34.615 0.00 0.00 0.00 4.00
338 341 1.189403 GAGCGACTTCGATTGTACCG 58.811 55.000 2.02 0.00 43.02 4.02
339 342 1.918609 GTGAGCGACTTCGATTGTACC 59.081 52.381 2.02 0.00 43.02 3.34
345 348 3.717400 ATGTATGTGAGCGACTTCGAT 57.283 42.857 2.02 0.00 43.02 3.59
348 351 4.210120 GGATGAATGTATGTGAGCGACTTC 59.790 45.833 0.00 0.00 0.00 3.01
372 375 2.034179 GTGTGCATGCATGTGCTCATAT 59.966 45.455 25.64 0.00 46.32 1.78
381 384 1.019673 GGGTAGAGTGTGCATGCATG 58.980 55.000 25.64 22.70 0.00 4.06
387 390 2.388735 CTCATAGGGGTAGAGTGTGCA 58.611 52.381 0.00 0.00 0.00 4.57
399 402 1.271934 CTCTCGGATGTGCTCATAGGG 59.728 57.143 0.32 0.00 34.06 3.53
411 422 0.748729 GTCGGTCCAGTCTCTCGGAT 60.749 60.000 0.00 0.00 32.83 4.18
415 426 1.335496 GCTATGTCGGTCCAGTCTCTC 59.665 57.143 0.00 0.00 0.00 3.20
424 435 5.741388 AATCTCAAAATGCTATGTCGGTC 57.259 39.130 0.00 0.00 0.00 4.79
425 436 6.515272 AAAATCTCAAAATGCTATGTCGGT 57.485 33.333 0.00 0.00 0.00 4.69
438 449 7.662258 TCCGTGGTAACTTCATAAAATCTCAAA 59.338 33.333 0.00 0.00 37.61 2.69
446 457 2.995258 GCGTCCGTGGTAACTTCATAAA 59.005 45.455 0.00 0.00 37.61 1.40
456 467 3.583276 CTGCAAGGCGTCCGTGGTA 62.583 63.158 12.08 0.00 33.72 3.25
458 469 4.988598 ACTGCAAGGCGTCCGTGG 62.989 66.667 12.08 1.88 39.30 4.94
470 481 1.529438 GAAATGTTTCCGTCGACTGCA 59.471 47.619 14.70 5.52 0.00 4.41
482 493 2.668144 TTCGGTGGGAGGAAATGTTT 57.332 45.000 0.00 0.00 0.00 2.83
518 529 9.663904 TCGCATTATTTCTGTATTTATTTCAGC 57.336 29.630 0.00 0.00 0.00 4.26
534 545 8.718102 ACTTGACATTAGTACTCGCATTATTT 57.282 30.769 0.00 0.00 0.00 1.40
567 578 1.702957 CCTCAGTCCACCAGGGTTTAA 59.297 52.381 0.00 0.00 38.11 1.52
569 580 2.069165 GCCTCAGTCCACCAGGGTTT 62.069 60.000 0.00 0.00 38.11 3.27
576 587 1.137872 CAGTGATAGCCTCAGTCCACC 59.862 57.143 0.00 0.00 35.23 4.61
577 588 1.827969 ACAGTGATAGCCTCAGTCCAC 59.172 52.381 0.00 0.00 35.23 4.02
584 595 2.080654 AGGAGGACAGTGATAGCCTC 57.919 55.000 13.78 13.78 44.84 4.70
588 599 4.895889 TGATGGTTAGGAGGACAGTGATAG 59.104 45.833 0.00 0.00 0.00 2.08
614 625 4.647291 AAGAAATTCACGTGCGAACTAG 57.353 40.909 11.67 0.00 0.00 2.57
616 627 3.963383 AAAGAAATTCACGTGCGAACT 57.037 38.095 11.67 3.58 0.00 3.01
655 668 8.560576 AAACTACAACTGAAAATGAACAATCG 57.439 30.769 0.00 0.00 0.00 3.34
674 687 3.181480 TGCAACAAGGCTTGGAAAACTAC 60.181 43.478 29.26 11.16 34.12 2.73
677 690 2.204237 CTGCAACAAGGCTTGGAAAAC 58.796 47.619 29.26 14.80 34.12 2.43
697 710 5.121105 AGGGCGATACTAATGTTACAAACC 58.879 41.667 0.00 0.00 0.00 3.27
703 716 8.737168 ACGTATATAGGGCGATACTAATGTTA 57.263 34.615 7.32 0.00 0.00 2.41
817 830 6.197468 ACGGTTTATTGTGTTGTGATTTTTCG 59.803 34.615 0.00 0.00 0.00 3.46
847 860 0.324460 AGGTGGTCGAGTTCCTAGGG 60.324 60.000 9.46 0.00 0.00 3.53
893 907 1.464608 CATCATGCGTGTTCGGTTCTT 59.535 47.619 5.68 0.00 37.56 2.52
894 908 1.078709 CATCATGCGTGTTCGGTTCT 58.921 50.000 5.68 0.00 37.56 3.01
928 944 2.307686 TGGCGATACCTTTTCCCTTCTT 59.692 45.455 0.00 0.00 40.22 2.52
944 960 1.834896 TGCTAAGGGTAGAAATGGCGA 59.165 47.619 0.00 0.00 0.00 5.54
968 984 2.929641 TCATCTTTGCGGCCATGATAA 58.070 42.857 2.24 0.00 0.00 1.75
1375 1391 6.942005 TGGTTCAGACTTTATTCATCACACAT 59.058 34.615 0.00 0.00 0.00 3.21
1391 1414 6.582636 TCACCATATATTCAGTGGTTCAGAC 58.417 40.000 7.22 0.00 43.44 3.51
1392 1415 6.611236 TCTCACCATATATTCAGTGGTTCAGA 59.389 38.462 7.22 0.00 43.44 3.27
1393 1416 6.820335 TCTCACCATATATTCAGTGGTTCAG 58.180 40.000 7.22 0.00 43.44 3.02
1394 1417 6.806668 TCTCACCATATATTCAGTGGTTCA 57.193 37.500 7.22 0.00 43.44 3.18
1395 1418 6.203723 GCTTCTCACCATATATTCAGTGGTTC 59.796 42.308 7.22 0.00 43.44 3.62
1396 1419 6.058183 GCTTCTCACCATATATTCAGTGGTT 58.942 40.000 7.22 0.00 43.44 3.67
1398 1421 5.699915 CAGCTTCTCACCATATATTCAGTGG 59.300 44.000 7.22 0.00 38.96 4.00
1399 1422 6.286758 ACAGCTTCTCACCATATATTCAGTG 58.713 40.000 0.00 2.26 0.00 3.66
1400 1423 6.491714 ACAGCTTCTCACCATATATTCAGT 57.508 37.500 0.00 0.00 0.00 3.41
1401 1424 7.307042 CGAAACAGCTTCTCACCATATATTCAG 60.307 40.741 0.00 0.00 31.20 3.02
1402 1425 6.479990 CGAAACAGCTTCTCACCATATATTCA 59.520 38.462 0.00 0.00 31.20 2.57
1403 1426 6.073548 CCGAAACAGCTTCTCACCATATATTC 60.074 42.308 0.00 0.00 31.20 1.75
1404 1427 5.760253 CCGAAACAGCTTCTCACCATATATT 59.240 40.000 0.00 0.00 31.20 1.28
1405 1428 5.300752 CCGAAACAGCTTCTCACCATATAT 58.699 41.667 0.00 0.00 31.20 0.86
1406 1429 4.693283 CCGAAACAGCTTCTCACCATATA 58.307 43.478 0.00 0.00 31.20 0.86
1407 1430 3.535561 CCGAAACAGCTTCTCACCATAT 58.464 45.455 0.00 0.00 31.20 1.78
1408 1431 2.935238 GCCGAAACAGCTTCTCACCATA 60.935 50.000 0.00 0.00 31.20 2.74
1409 1432 1.813513 CCGAAACAGCTTCTCACCAT 58.186 50.000 0.00 0.00 31.20 3.55
1440 1463 7.221067 ACGAAACAGCTTATTATCTCTTTCTCG 59.779 37.037 0.00 0.00 0.00 4.04
1445 1468 5.294552 GGCACGAAACAGCTTATTATCTCTT 59.705 40.000 0.00 0.00 0.00 2.85
1450 1473 4.006989 TGTGGCACGAAACAGCTTATTAT 58.993 39.130 13.77 0.00 0.00 1.28
1451 1474 3.403968 TGTGGCACGAAACAGCTTATTA 58.596 40.909 13.77 0.00 0.00 0.98
1452 1475 2.226330 TGTGGCACGAAACAGCTTATT 58.774 42.857 13.77 0.00 0.00 1.40
1466 1489 1.304630 ATGCAGCTGGAATGTGGCA 60.305 52.632 13.45 2.18 35.54 4.92
1488 1514 8.025445 CGTTGTTAATTACAGTACTGTAGGAGT 58.975 37.037 29.34 20.07 45.57 3.85
1489 1515 8.025445 ACGTTGTTAATTACAGTACTGTAGGAG 58.975 37.037 29.34 18.01 45.57 3.69
1490 1516 7.885297 ACGTTGTTAATTACAGTACTGTAGGA 58.115 34.615 29.34 19.67 45.57 2.94
1491 1517 8.025445 AGACGTTGTTAATTACAGTACTGTAGG 58.975 37.037 29.34 18.50 45.57 3.18
1492 1518 8.961294 AGACGTTGTTAATTACAGTACTGTAG 57.039 34.615 29.34 19.19 45.57 2.74
1493 1519 9.184062 CAAGACGTTGTTAATTACAGTACTGTA 57.816 33.333 27.99 27.99 44.42 2.74
1494 1520 7.707893 ACAAGACGTTGTTAATTACAGTACTGT 59.292 33.333 30.13 30.13 45.00 3.55
1495 1521 8.068893 ACAAGACGTTGTTAATTACAGTACTG 57.931 34.615 21.44 21.44 45.00 2.74
1516 1542 8.043710 ACTGATAGAACTTTTATCCTGGACAAG 58.956 37.037 0.00 4.58 0.00 3.16
1525 1551 9.471084 GAGCCTAAGACTGATAGAACTTTTATC 57.529 37.037 0.00 0.00 0.00 1.75
1536 1562 5.696030 TCTGCTAAGAGCCTAAGACTGATA 58.304 41.667 0.00 0.00 41.51 2.15
1539 1565 4.727507 TTCTGCTAAGAGCCTAAGACTG 57.272 45.455 0.00 0.00 41.51 3.51
1540 1566 4.442753 GCATTCTGCTAAGAGCCTAAGACT 60.443 45.833 0.00 0.00 41.51 3.24
1541 1567 3.807071 GCATTCTGCTAAGAGCCTAAGAC 59.193 47.826 0.00 0.00 41.51 3.01
1542 1568 3.452264 TGCATTCTGCTAAGAGCCTAAGA 59.548 43.478 0.34 0.00 45.31 2.10
1543 1569 3.801698 TGCATTCTGCTAAGAGCCTAAG 58.198 45.455 0.34 0.00 45.31 2.18
1545 1571 3.198635 AGTTGCATTCTGCTAAGAGCCTA 59.801 43.478 0.34 0.00 45.31 3.93
1548 1574 3.005554 TCAGTTGCATTCTGCTAAGAGC 58.994 45.455 12.65 0.00 45.31 4.09
1551 1577 3.008330 AGCTCAGTTGCATTCTGCTAAG 58.992 45.455 12.65 7.86 45.31 2.18
1552 1578 3.063510 AGCTCAGTTGCATTCTGCTAA 57.936 42.857 12.65 0.00 45.31 3.09
1564 1601 2.462456 TTGATCGCTGAAGCTCAGTT 57.538 45.000 12.71 1.94 45.94 3.16
1573 1610 0.721154 GATGCACGTTTGATCGCTGA 59.279 50.000 0.00 0.00 0.00 4.26
1768 1820 4.729458 GCAAGTGTGAGCTAACGTTTTTCA 60.729 41.667 5.91 5.54 0.00 2.69
1801 1853 7.546778 TGTCATATAAAAGCGCTGACAAATA 57.453 32.000 20.01 10.96 42.20 1.40
1817 1869 6.378280 AGCTCATCATACGGACATGTCATATA 59.622 38.462 26.47 15.21 0.00 0.86
1818 1870 5.186603 AGCTCATCATACGGACATGTCATAT 59.813 40.000 26.47 19.21 0.00 1.78
1843 1895 8.094548 GGTATAACCAAAAGCCTTTCTGAAAAT 58.905 33.333 4.18 0.00 38.42 1.82
1851 1903 5.710567 GTCTCAGGTATAACCAAAAGCCTTT 59.289 40.000 0.00 0.00 41.95 3.11
1864 1916 2.170607 GCAAGCCAAGGTCTCAGGTATA 59.829 50.000 0.00 0.00 0.00 1.47
1873 1925 3.492102 TGATATAGGCAAGCCAAGGTC 57.508 47.619 14.40 6.72 38.92 3.85
1908 1960 5.562890 CGACGATGCTGATAATCTAGTGGAA 60.563 44.000 0.00 0.00 0.00 3.53
1909 1961 4.083271 CGACGATGCTGATAATCTAGTGGA 60.083 45.833 0.00 0.00 0.00 4.02
1910 1962 4.083271 TCGACGATGCTGATAATCTAGTGG 60.083 45.833 0.00 0.00 0.00 4.00
1944 1996 4.081406 TGTCAAATGCAGTATTCAAGGCT 58.919 39.130 0.00 0.00 0.00 4.58
1967 2019 2.787473 TGCCGATGAGGACAAAGATT 57.213 45.000 0.00 0.00 45.00 2.40
1974 2026 3.058639 GCTATTTTGATGCCGATGAGGAC 60.059 47.826 0.00 0.00 45.00 3.85
1977 2029 4.556942 TTGCTATTTTGATGCCGATGAG 57.443 40.909 0.00 0.00 0.00 2.90
2001 2053 1.135315 CAAAGATGCGCAAGACCGG 59.865 57.895 17.11 0.00 43.02 5.28
2158 2210 7.502895 TGGAATTACTGTTGGTTTAAAGCTACA 59.497 33.333 25.52 25.52 39.18 2.74
2167 2219 8.966868 CCATATAGTTGGAATTACTGTTGGTTT 58.033 33.333 0.00 0.00 39.25 3.27
2183 2235 6.266168 TGCCACAAAACTTCCATATAGTTG 57.734 37.500 0.00 0.00 36.06 3.16
2189 2241 7.014711 TCACTTTTATGCCACAAAACTTCCATA 59.985 33.333 0.00 0.00 0.00 2.74
2192 2244 5.596845 TCACTTTTATGCCACAAAACTTCC 58.403 37.500 0.00 0.00 0.00 3.46
2196 2248 6.586082 CCAGTATCACTTTTATGCCACAAAAC 59.414 38.462 0.00 0.00 0.00 2.43
2204 2256 6.318648 TGAATCCACCAGTATCACTTTTATGC 59.681 38.462 0.00 0.00 0.00 3.14
2264 2316 6.701400 CCTTGTGGTCTTCCAAATTTAACTTG 59.299 38.462 0.00 0.00 46.15 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.