>input_sequence_84678
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-------------------------------------------------------ATGGCCGTCGCCATTCTGGCCGCGG
CCGCGATCACCGTGGCGGCGACGGACGGGACGGGGCCGAGGAGCTACTTCTCGTCGTGGGACGGGCCCGCGTGCACGGGG
CGCATGTCGAGCGCGGGGACCTGCGGGTGCAGCCCCGTCCACTTCCACGGCGGCCACGAGTTCAACTTCCGCGGCGAGAC
GGCGACGCTCTACAGCGAGCACGGCTGCGCCGGCACGCCGTACCAGGTGTTCGAGGACACCCAGGCCTGCGGCGACTTCG
GCTGGCGCAGCATCCACATCGACTGCTGA---------------------------------------------------
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>chr2A_1_TraesCS2A01G394400
GAGGGGGCCTTTATTTGTGGAGGGATACGCCTTCAATGCGTCAAGGGATCAAGACTTCGAAACTCTTACCTTGAGAGATA
AACAGTAAAATTTCATTTAGATTTTTTATATCGAGTCCCCCCTCAACATCATGAATTAAGGACTCCTGCCTCCCCAGTGG
AGGGATCCACATGACCTAGCAGGAGAGATTGCAGTAAGAATGCAATAATTGTGATGCTTCGTCTTTCTCAGAATATTTTT
GTATAATTGACCCAGTGTTATTCTTGTTCTAAAGTGTAATTTATTTCATT--TTTAACAAAAATATACTTTTGAAATAGA
AGACGTGGATTTTTTTAATACGGTACAATCGAAGTCGCTCACATACATTCATCCATATGAGCACATGCATGCACACTCTA
CC--------CCTATGAGCACATCCGAGAGACTGGACCGACATAGCATTTTGAGATTTTATGAAGTTACCACGGACGCCT
TGCAGTCGACGGAAACATTTCCTCCCACCGAAAAAACATCACTAAAAGGCTGAAATAAATACAGAAATAATGCGAGTACT
AATGTCAAGTCTAGGACTTAAACCCTGGTGGACTGAGGCTATCACTGTCCTCCTAACCATCACGCTAGTTCGCACGTGAA
TTTCTTTTCAATAGATA--GGTATGCACGATTGTTCATTTTCAGTTGTAGTTTTCCAAGCCTTGTTGCAGGTTTGTAACA
TTAGTATCGCCCTATATACGTTGACTCGTTGATGACAACAGCAAAGGTAAACAGAGAACTACACAGACACGTACGCAACG
ATGTAAGCTCTCTAGATCGACAGACACAACGAAAAATCACAACACAATAAACCGTCAAGCCCTAGGAACTCGACCACCTT
-CCCTTTTGGCTTCACCTATAAAACCAAGAACCGAAC--ACGCATGATGCCGTGCGATACGAAAAGAAGGGAAAAGGTAT
CGCCATTTCTACCCTTAGCACTGTTATCATGGCCGCAAAGATGATTGCCGCGGCGATGGCCGTCGCCATTCTGGCCGCGG
CCGCGATCACCGTGGCGGCGACGGACGGGACGGGGCCGAGGAGCTACTTCTCGTCGTGGGACGGGCCCGCGTGCACGGGG
CGCATGTCGAGCGCGGGGACCTGCGGGTGCAGCCCCGTCCACTTCCACGGCGGCCACGAGTTCAACTTCCGCGGCGAGAC
GGCGACGCTCTACAGCGAGCACGGCTGCGCCGGCACGCCGTACCAGGTGTTCGAGGACACCCAGGCCTGCGGCGACTTCG
GCTGGCGCAGCATCCACATCGACTGCTGAGCGCGCGTGACCGCGCCCGTGGTGCACTCCGGCGACCCGCTCTATATATAG
CTTACCCCAAAATAATGAAGTGCACGTGTCATGTGTGA-------TGAATAAAGTCTGAACCACTGAATATATGGTGAGA
AGCTGTTTCGGCAGTTCAAAAGCGAGAAAGAGATAATAAGCTGTTTCGTGCCACATTCCAGCTG---CATGATACTCCTA
CAGTACTGTAATTAACAACGTCTTGTCCAGGATAAAAGTTCTATCAGTCTTAGGCTCTTAGCAGAAT-----------GC
AACTGAGCTTCAGCGATCAAACGTGCATCAAGCTACATAGGTTCAACAAAATACACGGCATCTCACGACAGCAGCCATGC
CATACCAACGCAGGTGGAAGTTTCTTCAGCAAAGCCCAGGTGACACAAACAAC------------AACC---CGTACTAT
TTCGGGGCTCCTGACATCTCATGAACGGTATTTGGACCTTGATTTCTGCATATAAAACATGAAAAACGTTAGCTCACACT
TGCCAGCAACCGTATTTGTCAGCGCTTTTATATGACATGTCCGTATGATGAGCTATTTTCAGAAAGGCTTTTGGTTATAC
CTGAGACCTTGGCTTGCCTATATCAAGCGAGTCCATTTTTTCCACTAGATTATCAGCATCGTCGAGCTCGATGACAGCCT
TGAATACTGCATTTGACAAATCTTTGTCCTCATCGGCATCAAAATAGCAATCCCGGTCTTGCGCATCTTTGACTATCTTC
TGCCAAACAGACTTGCTGTTGGATAAAGTCGTCCCATTTCCTACTATCCATAAACAGTGCCTGGCAAGATCAACAACAAA
TAAGTTACTCCTGATGGCAATAAAGAGCCTTTGAATATCATTCAAACTATGTAGCTTTAAACCAACAGTAATTCCAACTA
TATGGAAGTTTTGTGGCATAAAAGTGATACTGGTGGATTCATATTTAGCACCGTATTATAGAAGAATTAACTGTCCAAGT
TAAATTTGGAAGACCACAAGGAGTA
>chr2B_67
TACTTTGAAT-------------------------------------------------------------------ATA
AACAGTAAAATTTCATTTAGATTTTAAATATTGAGCA-CCCCTCAACATCATGAATTAAGGATTCCTGCCT-CCCAGTGG
AGGGATCCACATGACCTAGTAGGATAGATTGCAGTAAGAAAGCAGTAATTTTGATGCTTCGTCTTTCTTAGAATATTTTT
GTATAATTGCCTC--TGTTATTCTTGTTCTATAGTGTAATTTGTTTCATTCTTTTAACGGAAATATACCTTTTAAATAGT
AGACATGATTTTTTTTAATATAGTACAGTCAAAGTCGCTCACATACATTCATCCCTATGAGCAAATGCACGCACACTCTA
CGTCTCTACACCTATGAGCACCTCCAAGAGACTGAGCCGACATAGCATCTTGAGATCTTATGAAGTCATCACAGACGCCT
CGCAGTCAACGGGAATGTCTCCTCTCACTGAACGAACATCACCGAAAGCCTAAAATAAATACAGGAATAATGCGAGTATC
AATGTCAAGTCTAGGACATGAACCCTAATGGACTCAGGATATCACTGTCCTCCTAACCATCACGTTGGTTCGCACGTGAA
TTTCTTTTCAATAGATATAGGTATGCAAGATTGTTCATTTTTAGTTTTGTTTTTCCAAGCCTTGTTGCAAGTTTGCAACA
TTAGTATCGCCCTATATACGTTGACC----GATGACAACAGCAAAGGTAAGCAGAGAACTACACAGACACGTACGCAACG
ATGTAAGCTCTCTAAATCGGCAGACACAATGAAAAATCGCAACACAATAAACCGTCTAGTCCTAGGAACTCGACCGCCTA
--CCTTTTGGCTTCACCTATAAAACCTCGAACCGAAGG--CGCATGATGCCGCGCGATACGAACAGAAGGAAAAAGGTAG
CGCCATTCCTACCCTTAGCACTGCTATCATGGCCACAAAGATGACTGCCGCGGCGATGGCCGTCGCCATCCTGGCCACGC
TGGCGGCGGCCGTGGCGGCGACGGACGGGACGGGGCCGAGGAGCTACTTCTCGTCGTGGGACGGGCCCGCGTGCACGGGG
CGCATGTCCAGCGCGGGGAGCTGCGGGTGCAGCCCCGTCCACTTCCACGGCGGCCACGAGTTCAACTTCCGCGGCGAGAC
GGCGACGCTCTACAGCGAGCACGGCTGCGCCGGCACGCCGTACCAGGTGTTCGAGGACACCCAGGCCTGCGGCGACTTCG
GCTGGCGCAGCATCCACATCGACTGCTGAGCGTGACCACACCGACGTGCGAGCAACCCGGCCAAGACTAC----------
----CCCCGAAATAATGAAGTGCACGCGTCGTGTGTGAAGTGTGATGAATAAATGTCTGAATGTG-------TGGTGAGA
AGCTGTTTCGGCAGTTCAAAAGGGAGATAGAG---ATAAGCTGTTTCGCGCCACATTCCAGCTAGTACATGCC-------
---------AATTAACAAGGTTTTGTCCAGAATAAAAGTTCCATGTCGATCAGTCTTATAGCAGAATAACAATGGTACGC
TACTGAGCTCCAGCGATGAAACGTGCATCAAGCT---TAAGTTCAACAAAATACAGGGCATCTCACGACAGCAGCCGGGC
CATACTAACGCAGGTGGAAGTTTCTTCAGCAAAGCCCAGGTGACACAAACATCACGCCGACACAGAACT---CGTACTAT
TTCAGGGCTCCTGACATCTCATGAACGGTATTTGGACCTTGATTTCTGCATATAGAACACGAAAAACGTTAGCTCACACT
TGCCAGCAACCGGATTTGTCAGCCCTTTGGTATGACATGTCCGTATGATGAGAGGTTTTCAG-AAGGCTTTTGGTAATAC
CTGAAACCTTGGCTTGCTTATGTGCAGCGAGTCCATTTT---CACTAGATTATCAGCATCGTCGAGCTCGATGACGGCCT
TGATTACTGCATTTGATAGATCTTTATCTTCATCGGCATCAAAATAGCAATCTCGGTCTTGCGCATCTTTGACTATATTC
TGCCAAACAGACTTGCTGTTGGATAAAGTCGTCCCGTTTCCTACTATCCATAAACAGTGCCTGGCAAGATCAACAACAAA
TAAGTTACTCCTGATGGCAATAAAGAGCCTTTCAATTTCATTCAAACTACGTAGTTTTCAACCAACAGTTATTCTAACTA
AATTGAAATTTTGTGAAATAGAAGTTATACTGCTGGATTCATATTTAGCACCGTATTAT---------------------
-------------------------
>chr2D_657
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----------------------------GATTGTTCGTTTTCAGATTTATTGTTTCAAGCCTTGTTGCAAGTTTGCAACA
TTAGTATCGCCCTATATACGTTGACTCGTTGATGACAACAGCAAAGGTAAACAGAGAACTACGCAGACACGTACGCAAGG
ATGTAAGCTCTCTAGATCGACAGACACAATGAAAAATCACAACACAATAAACCGTCAAGTCCTAGGAACTCGACCACCTT
ACCTTTTTGGCTTCACCTATAAAACCTCGAACCTATAAGACGGATGATGCCGTGCGATACGAACAGAAGGAAAAAGGTAG
CGCCATTTCTACCCTTAGCACAGCTATCATGGCCACAAAGATGGTTGCCGCGGCGATGGCCGTCGCCATCCTGGCCGCGC
TCGCGGTGGCCGTGGCGGCGACGGACGGGACGGGGCCGAGGAGCTACTTCTCGTCGTGGGACGGGCCCGCGTGCACGGGG
CGCATGTCGAGCGCGGGGAGCTGCGGGTGCAGCCCCGTCCACTAACACGGCGGCCACGAGTTCAACTTCCGCGGCGAGAC
GGCGACGCTCTACAGCGAGCACGGTTGCGCCGGCACGCCGTACCAGGTGTTCGAGGACACCCAGGCCTGCGGCGACTTCG
GCTGGCGCAGCATCCACATCGACTGCTAAGCGCG--TGACCGCGC-CGTGGTGCACTCCGGCGACCCGCTCTATATATAG
CTTACCCCAAAATAATGAAGTGCACGTGTCGTGTGTGA-------TGAATAAATGTCTGAATGTC-------TGGTGAGA
AGCTGTTTCGGCAGTTCAAAAGGGAGACAGAG---ATAAGCTGTTTCGCGCCACATTCTAGCTG---CATGCC-------
---------AATTAAGAACGTTTTGTCCAGAATAAAAGTTCCATGTCGATCAGTCTAATAGCAGAATAACAACGGTACGC
TACTGAGCTCGAGTGATCAAACGAGCATCAAGCTACATAGGTTCAACAAAATATACGGCATCTCACGACAGCAGCCATGC
CATACCAACGCAGGTGGAAGTTTCTTCAGCAAAGCCCAGGTGACACAAACATCATGCCTACAAACAACAGCGCGTACTAT
TTCGGGGCTCCTGACATCTCATGAACGGTATTTGGACCTTGATTTCTGCATATAAAACACGAAAAACGTTAGCTCACACT
TGCCAGCAACCGGATTTGTCAGCGCTTTGGTCTGACATGTCCGTATGATGAGCAGTTTTCAG-AAGGCTTTTGGTAATAC
CTGAAACCTTGGCTTGCTTATATGCAGCGAGTCCATTTT---CACTAGATTATCAGCATCATCGAGCTCGATGACGGCCT
TGATTACTGCATTTGACAGATCTTTATCTTCATCGGCATCAAAATAACAATCTCGGTCTTGGGCATCTTTGACTATCTTC
TGCCAAACAGACTTGCTGTTGGATAAAGTCCTCCCATTTCCTACTATCCATAAACAGTGCCTGACAATAACAGCAACAAA
TAAGTTACTACCGATGGCATTAGAGAGCCACATTGGTCCTC---------------------------------------
---TGCATGTTTGTGACATAAAAGTGATACA-GTGGATTCATATTTAACACCGTATTGTAGAAGAATTAACTGTCAAAGT
TAAATTTGGAAGACCACAAGGAGTA
>SNPs
S-SSSS-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---
-------------------------SS----S---SSS------------------------S--------S--------
-------------------S----S---------------S---S-----S-----------------S-----------
---------S-S-SS----------------S----------S---------------SS--------S---S------S
----S--SS-----------SS-----S--S-----------------------S--------S-----S----------
-S-------------------S---S--------SS------------S-------S---------S-S---S-------
S------S----S--SS-S-----S---S---SS--------SS----S--S------------S-------------SS
-----------------S-S------SS------S---S-------------------------S-S-------------
---------------------------S------------------S--S-------------------S-----S----
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-----------------------------S-----------------------------S--------------------
--------------------------SS--------S--------------------------S------S--------S
-----------------------S----------S----------------------------------S---------S
S----S-SS-----------------------------------------------------------------------
-------------------S------------------------------------------------------------
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----------------------------------SS---------S----------------------------------
------------------------------S----------------------SSSSSS-SSSSSSSSSSSS--------
----------------------S----S----SSS-------------S----------------------SSSSSSSSS
SSSSSSSSS------------S--------S----------S--SSSSS-S--S--SS----------------------
S--------S----------------------------------------------------------------------
---------------------------------------------------S----------------S-----------
-----------------------------------------------------------S--------------------
------------S---------------SS-----------------------SS-------S------------S----
----S------------S-----SS--------------SSS---------------------------------S----
---S--------------S------S--S-----------------------S---------------------------
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--------------------------------S---S------------S----S---S----------S----S-----
S--S---S-------S-----------------------------------------------------------S----
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>forward_435
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---------------GAGCACATCCGAGAGACTGG---------------------------------------------
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>reverse_1610
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---------TCAGCGATCAAACGTGCATC---------------------------------------------------
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