Multiple sequence alignment - TraesCS2A01G391800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G391800 chr2A 100.000 2452 0 0 1 2452 642198346 642200797 0.000000e+00 4529
1 TraesCS2A01G391800 chr2A 90.578 329 23 5 2105 2426 745402974 745402647 1.740000e-116 429
2 TraesCS2A01G391800 chr2B 87.628 1956 97 59 218 2105 583768476 583770354 0.000000e+00 2137
3 TraesCS2A01G391800 chr2B 90.222 225 11 2 1 224 583767529 583767743 1.440000e-72 283
4 TraesCS2A01G391800 chr2D 91.222 1367 56 22 1 1355 497900275 497901589 0.000000e+00 1801
5 TraesCS2A01G391800 chr2D 89.542 765 35 16 1354 2105 497901762 497902494 0.000000e+00 928
6 TraesCS2A01G391800 chr2D 89.024 328 28 7 2093 2414 36275102 36275427 1.370000e-107 399
7 TraesCS2A01G391800 chr7A 92.114 317 20 2 2105 2416 690129123 690128807 2.240000e-120 442
8 TraesCS2A01G391800 chr5A 91.195 318 21 4 2105 2416 26956987 26956671 2.250000e-115 425
9 TraesCS2A01G391800 chr5A 90.625 320 24 3 2103 2416 228894950 228895269 1.050000e-113 420
10 TraesCS2A01G391800 chr3A 91.167 317 23 3 2105 2416 690436418 690436734 2.250000e-115 425
11 TraesCS2A01G391800 chr3A 89.655 319 27 4 2104 2416 338489990 338490308 3.800000e-108 401
12 TraesCS2A01G391800 chr6A 90.343 321 21 7 2095 2407 420569667 420569985 1.750000e-111 412
13 TraesCS2A01G391800 chr1A 90.764 314 22 4 2107 2414 396864002 396863690 1.750000e-111 412


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G391800 chr2A 642198346 642200797 2451 False 4529.0 4529 100.000 1 2452 1 chr2A.!!$F1 2451
1 TraesCS2A01G391800 chr2B 583767529 583770354 2825 False 1210.0 2137 88.925 1 2105 2 chr2B.!!$F1 2104
2 TraesCS2A01G391800 chr2D 497900275 497902494 2219 False 1364.5 1801 90.382 1 2105 2 chr2D.!!$F2 2104


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
455 1203 0.179092 CTCGGCATCATGTCTGCAGA 60.179 55.0 13.74 13.74 40.68 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1674 2652 0.03582 GCCGTTGGTTCACCCTCATA 60.036 55.0 0.0 0.0 34.29 2.15 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 1.305930 GCCTCGCCTCGGACAAATTT 61.306 55.000 0.00 0.00 0.00 1.82
88 89 5.563867 GCCTCGGACAAATTTTGACACATAA 60.564 40.000 15.81 0.00 0.00 1.90
141 142 1.080995 CAGCGCTCAACCTCTAGTGC 61.081 60.000 7.13 0.00 47.00 4.40
170 172 1.662629 CATACTTGGCAGAACTGAGCG 59.337 52.381 5.97 0.00 0.00 5.03
181 183 4.645956 CAGAACTGAGCGATCACATTTTC 58.354 43.478 0.00 0.41 0.00 2.29
213 215 0.940126 AGAGCAACTGAGCAAACACG 59.060 50.000 0.00 0.00 36.85 4.49
254 996 6.105333 GTGAATGATAAACAGACAGAGCTCT 58.895 40.000 11.45 11.45 0.00 4.09
255 997 6.593382 GTGAATGATAAACAGACAGAGCTCTT 59.407 38.462 15.27 5.77 0.00 2.85
256 998 7.118971 GTGAATGATAAACAGACAGAGCTCTTT 59.881 37.037 15.27 8.10 0.00 2.52
257 999 7.663081 TGAATGATAAACAGACAGAGCTCTTTT 59.337 33.333 15.27 14.10 0.00 2.27
258 1000 7.992754 ATGATAAACAGACAGAGCTCTTTTT 57.007 32.000 15.27 10.72 0.00 1.94
259 1001 7.426929 TGATAAACAGACAGAGCTCTTTTTC 57.573 36.000 15.27 10.94 0.00 2.29
260 1002 7.220030 TGATAAACAGACAGAGCTCTTTTTCT 58.780 34.615 15.27 13.14 0.00 2.52
266 1008 7.275920 ACAGACAGAGCTCTTTTTCTTTTCTA 58.724 34.615 15.27 0.00 0.00 2.10
285 1027 5.692115 TCTATTCTAAGAACATGGTGGCA 57.308 39.130 0.00 0.00 0.00 4.92
321 1063 3.893521 ACCGAAAAGAAGGGAAAAGTCA 58.106 40.909 0.00 0.00 0.00 3.41
416 1164 4.973168 TGTTGCTGATTAGACTTCCAACT 58.027 39.130 0.00 0.00 34.01 3.16
417 1165 4.756642 TGTTGCTGATTAGACTTCCAACTG 59.243 41.667 0.00 0.00 34.01 3.16
455 1203 0.179092 CTCGGCATCATGTCTGCAGA 60.179 55.000 13.74 13.74 40.68 4.26
456 1204 0.460811 TCGGCATCATGTCTGCAGAC 60.461 55.000 35.04 35.04 44.97 3.51
457 1205 0.461516 CGGCATCATGTCTGCAGACT 60.462 55.000 38.81 25.24 44.99 3.24
458 1206 1.015109 GGCATCATGTCTGCAGACTG 58.985 55.000 38.81 32.21 44.99 3.51
459 1207 0.377554 GCATCATGTCTGCAGACTGC 59.622 55.000 38.81 34.58 44.99 4.40
479 1227 1.823899 GCTATGGGTTTGGCTCCGG 60.824 63.158 0.00 0.00 0.00 5.14
512 1260 3.694734 TCGACGTATATTTGGTTCCGTC 58.305 45.455 0.00 0.00 40.75 4.79
515 1263 3.699067 ACGTATATTTGGTTCCGTCTCG 58.301 45.455 0.00 0.00 0.00 4.04
536 1284 1.342082 CGCTGTCTTTGGACGTACGG 61.342 60.000 21.06 0.00 44.83 4.02
539 1287 1.081242 GTCTTTGGACGTACGGCGA 60.081 57.895 21.06 11.81 44.77 5.54
590 1339 1.641123 CGTGGGGGTTCGTATTGTGC 61.641 60.000 0.00 0.00 0.00 4.57
597 1349 2.671396 GGGTTCGTATTGTGCACTACTG 59.329 50.000 19.41 9.45 0.00 2.74
652 1404 3.495670 AAACTCGAGCAGCAGTACTAG 57.504 47.619 13.61 0.00 0.00 2.57
653 1405 2.116827 ACTCGAGCAGCAGTACTAGT 57.883 50.000 13.61 0.00 0.00 2.57
654 1406 3.263489 ACTCGAGCAGCAGTACTAGTA 57.737 47.619 13.61 0.00 0.00 1.82
655 1407 2.937799 ACTCGAGCAGCAGTACTAGTAC 59.062 50.000 23.03 23.03 36.35 2.73
656 1408 2.286872 TCGAGCAGCAGTACTAGTACC 58.713 52.381 25.97 13.92 36.75 3.34
657 1409 1.334243 CGAGCAGCAGTACTAGTACCC 59.666 57.143 25.97 18.20 36.75 3.69
658 1410 1.334243 GAGCAGCAGTACTAGTACCCG 59.666 57.143 25.97 19.22 36.75 5.28
659 1411 0.384669 GCAGCAGTACTAGTACCCGG 59.615 60.000 25.97 18.90 36.75 5.73
697 1449 3.994392 GTGGAGTTACCGTATATGCCATG 59.006 47.826 0.00 0.00 42.61 3.66
702 1454 0.472044 ACCGTATATGCCATGCACCA 59.528 50.000 0.00 0.00 43.04 4.17
929 1687 2.030628 GCCGCTGGATTACTCTACTCTC 60.031 54.545 0.00 0.00 0.00 3.20
930 1688 3.482436 CCGCTGGATTACTCTACTCTCT 58.518 50.000 0.00 0.00 0.00 3.10
992 1750 1.002430 CTGCAGACAGTTAGGCTTGGA 59.998 52.381 8.42 0.00 39.22 3.53
1050 1814 4.703379 AATGGTGCCCAAAGAATTGAAA 57.297 36.364 0.00 0.00 38.94 2.69
1052 1816 2.368221 TGGTGCCCAAAGAATTGAAAGG 59.632 45.455 0.00 0.00 38.94 3.11
1118 1885 1.004918 GTCGTACTTGTGCTGCCCT 60.005 57.895 0.00 0.00 0.00 5.19
1119 1886 1.014564 GTCGTACTTGTGCTGCCCTC 61.015 60.000 0.00 0.00 0.00 4.30
1120 1887 1.741770 CGTACTTGTGCTGCCCTCC 60.742 63.158 0.00 0.00 0.00 4.30
1138 1905 0.741221 CCTGCCTTTACTCGGTGCTC 60.741 60.000 0.00 0.00 0.00 4.26
1146 1913 2.180159 TACTCGGTGCTCCTTTGCCC 62.180 60.000 2.85 0.00 0.00 5.36
1147 1914 3.249189 TCGGTGCTCCTTTGCCCT 61.249 61.111 2.85 0.00 0.00 5.19
1148 1915 2.282462 CGGTGCTCCTTTGCCCTT 60.282 61.111 2.85 0.00 0.00 3.95
1149 1916 1.903404 CGGTGCTCCTTTGCCCTTT 60.903 57.895 2.85 0.00 0.00 3.11
1150 1917 1.667722 GGTGCTCCTTTGCCCTTTG 59.332 57.895 0.00 0.00 0.00 2.77
1151 1918 1.667722 GTGCTCCTTTGCCCTTTGG 59.332 57.895 0.00 0.00 0.00 3.28
1193 1968 4.023980 TGACCATGACCTTGTCCTAGTAG 58.976 47.826 0.00 0.00 0.00 2.57
1194 1969 3.375699 ACCATGACCTTGTCCTAGTAGG 58.624 50.000 10.24 10.24 36.46 3.18
1195 1970 3.012502 ACCATGACCTTGTCCTAGTAGGA 59.987 47.826 15.33 15.33 43.43 2.94
1294 2072 2.125512 CTCGACTTCCAAGGGCGG 60.126 66.667 0.00 0.00 0.00 6.13
1378 2330 2.997897 GAGTCCTGGCGTGGTCCT 60.998 66.667 0.00 0.00 0.00 3.85
1435 2395 3.352524 GTCTGACCGACCGACAGT 58.647 61.111 0.00 0.00 36.62 3.55
1659 2637 3.082579 GCTCGCTCCATCGGGAACT 62.083 63.158 0.00 0.00 44.38 3.01
1689 2670 0.981183 AGCGTATGAGGGTGAACCAA 59.019 50.000 1.16 0.00 43.89 3.67
1795 2776 1.217882 CCGTGTCAACTGTCAACTCC 58.782 55.000 0.00 0.00 0.00 3.85
1864 2845 3.891400 CGATTGGCGGCACATGGG 61.891 66.667 12.92 0.00 36.03 4.00
1980 2961 2.263852 GTCGTCCCCCGTTCCTTC 59.736 66.667 0.00 0.00 37.94 3.46
1991 2972 3.558321 CCCCGTTCCTTCATTTGTCTACA 60.558 47.826 0.00 0.00 0.00 2.74
2058 3039 4.424626 AGCTCGTTGTACACACATAGATG 58.575 43.478 0.00 0.00 33.76 2.90
2094 3079 2.049433 CTCCGGACTGCGACGTTT 60.049 61.111 0.00 0.00 0.00 3.60
2105 3090 6.237648 CGGACTGCGACGTTTTAATAGTATTT 60.238 38.462 0.00 0.00 0.00 1.40
2106 3091 7.044117 CGGACTGCGACGTTTTAATAGTATTTA 60.044 37.037 0.00 0.00 0.00 1.40
2107 3092 8.264632 GGACTGCGACGTTTTAATAGTATTTAG 58.735 37.037 0.00 0.00 0.00 1.85
2108 3093 8.123445 ACTGCGACGTTTTAATAGTATTTAGG 57.877 34.615 0.00 0.00 0.00 2.69
2109 3094 7.223387 ACTGCGACGTTTTAATAGTATTTAGGG 59.777 37.037 0.00 0.00 0.00 3.53
2110 3095 7.041107 TGCGACGTTTTAATAGTATTTAGGGT 58.959 34.615 0.00 0.00 0.00 4.34
2111 3096 7.222611 TGCGACGTTTTAATAGTATTTAGGGTC 59.777 37.037 0.00 3.02 0.00 4.46
2112 3097 7.436376 GCGACGTTTTAATAGTATTTAGGGTCT 59.564 37.037 0.00 0.00 0.00 3.85
2113 3098 9.950680 CGACGTTTTAATAGTATTTAGGGTCTA 57.049 33.333 0.00 0.00 0.00 2.59
2132 3117 9.668497 AGGGTCTATTTAATTTCAGTAAGTCAC 57.332 33.333 0.00 0.00 0.00 3.67
2133 3118 8.890718 GGGTCTATTTAATTTCAGTAAGTCACC 58.109 37.037 0.00 0.00 0.00 4.02
2134 3119 9.668497 GGTCTATTTAATTTCAGTAAGTCACCT 57.332 33.333 0.00 0.00 0.00 4.00
2168 3153 7.964604 GTCAGGTGACTTAAAATCAGTAACT 57.035 36.000 2.72 0.00 41.65 2.24
2169 3154 8.379457 GTCAGGTGACTTAAAATCAGTAACTT 57.621 34.615 2.72 0.00 41.65 2.66
2170 3155 9.485206 GTCAGGTGACTTAAAATCAGTAACTTA 57.515 33.333 2.72 0.00 41.65 2.24
2181 3166 7.535489 AAATCAGTAACTTATAAGTCACGCC 57.465 36.000 18.28 5.45 38.57 5.68
2182 3167 4.665212 TCAGTAACTTATAAGTCACGCCG 58.335 43.478 18.28 8.71 38.57 6.46
2183 3168 3.795101 CAGTAACTTATAAGTCACGCCGG 59.205 47.826 18.28 0.00 38.57 6.13
2184 3169 3.445096 AGTAACTTATAAGTCACGCCGGT 59.555 43.478 18.28 3.27 38.57 5.28
2185 3170 3.323751 AACTTATAAGTCACGCCGGTT 57.676 42.857 18.28 0.00 38.57 4.44
2186 3171 3.323751 ACTTATAAGTCACGCCGGTTT 57.676 42.857 12.50 0.00 32.86 3.27
2187 3172 4.454728 ACTTATAAGTCACGCCGGTTTA 57.545 40.909 12.50 0.00 32.86 2.01
2188 3173 4.819769 ACTTATAAGTCACGCCGGTTTAA 58.180 39.130 12.50 0.00 32.86 1.52
2189 3174 5.422145 ACTTATAAGTCACGCCGGTTTAAT 58.578 37.500 12.50 0.00 32.86 1.40
2190 3175 5.876460 ACTTATAAGTCACGCCGGTTTAATT 59.124 36.000 12.50 0.00 32.86 1.40
2191 3176 7.041107 ACTTATAAGTCACGCCGGTTTAATTA 58.959 34.615 12.50 0.00 32.86 1.40
2192 3177 5.723492 ATAAGTCACGCCGGTTTAATTAC 57.277 39.130 1.90 0.00 0.00 1.89
2193 3178 2.349590 AGTCACGCCGGTTTAATTACC 58.650 47.619 1.90 0.00 34.72 2.85
2194 3179 2.075338 GTCACGCCGGTTTAATTACCA 58.925 47.619 1.90 0.00 38.12 3.25
2195 3180 2.075338 TCACGCCGGTTTAATTACCAC 58.925 47.619 1.90 0.00 38.12 4.16
2196 3181 1.130938 CACGCCGGTTTAATTACCACC 59.869 52.381 1.90 3.66 38.12 4.61
2197 3182 1.271271 ACGCCGGTTTAATTACCACCA 60.271 47.619 1.90 0.00 38.12 4.17
2198 3183 1.811359 CGCCGGTTTAATTACCACCAA 59.189 47.619 1.90 0.00 38.12 3.67
2199 3184 2.424246 CGCCGGTTTAATTACCACCAAT 59.576 45.455 1.90 0.00 38.12 3.16
2200 3185 3.626670 CGCCGGTTTAATTACCACCAATA 59.373 43.478 1.90 0.00 38.12 1.90
2201 3186 4.096081 CGCCGGTTTAATTACCACCAATAA 59.904 41.667 1.90 0.00 38.12 1.40
2202 3187 5.584442 GCCGGTTTAATTACCACCAATAAG 58.416 41.667 1.90 0.00 38.12 1.73
2203 3188 5.125900 GCCGGTTTAATTACCACCAATAAGT 59.874 40.000 1.90 0.00 38.12 2.24
2204 3189 6.678655 GCCGGTTTAATTACCACCAATAAGTC 60.679 42.308 1.90 0.00 38.12 3.01
2205 3190 6.374894 CCGGTTTAATTACCACCAATAAGTCA 59.625 38.462 11.83 0.00 38.12 3.41
2206 3191 7.067737 CCGGTTTAATTACCACCAATAAGTCAT 59.932 37.037 11.83 0.00 38.12 3.06
2207 3192 8.126700 CGGTTTAATTACCACCAATAAGTCATC 58.873 37.037 11.83 0.00 38.12 2.92
2208 3193 9.185680 GGTTTAATTACCACCAATAAGTCATCT 57.814 33.333 7.81 0.00 38.12 2.90
2210 3195 9.967451 TTTAATTACCACCAATAAGTCATCTGA 57.033 29.630 0.00 0.00 0.00 3.27
2211 3196 7.865706 AATTACCACCAATAAGTCATCTGAC 57.134 36.000 2.01 2.01 45.08 3.51
2212 3197 4.222124 ACCACCAATAAGTCATCTGACC 57.778 45.455 6.71 0.00 45.85 4.02
2213 3198 3.587061 ACCACCAATAAGTCATCTGACCA 59.413 43.478 6.71 0.00 45.85 4.02
2214 3199 3.941483 CCACCAATAAGTCATCTGACCAC 59.059 47.826 6.71 0.00 45.85 4.16
2215 3200 4.565444 CCACCAATAAGTCATCTGACCACA 60.565 45.833 6.71 0.00 45.85 4.17
2216 3201 4.393062 CACCAATAAGTCATCTGACCACAC 59.607 45.833 6.71 0.00 45.85 3.82
2217 3202 3.941483 CCAATAAGTCATCTGACCACACC 59.059 47.826 6.71 0.00 45.85 4.16
2218 3203 4.323792 CCAATAAGTCATCTGACCACACCT 60.324 45.833 6.71 0.00 45.85 4.00
2219 3204 5.248640 CAATAAGTCATCTGACCACACCTT 58.751 41.667 6.71 0.00 45.85 3.50
2220 3205 3.864789 AAGTCATCTGACCACACCTTT 57.135 42.857 6.71 0.00 45.85 3.11
2221 3206 3.409026 AGTCATCTGACCACACCTTTC 57.591 47.619 6.71 0.00 45.85 2.62
2222 3207 2.975489 AGTCATCTGACCACACCTTTCT 59.025 45.455 6.71 0.00 45.85 2.52
2223 3208 4.160329 AGTCATCTGACCACACCTTTCTA 58.840 43.478 6.71 0.00 45.85 2.10
2224 3209 4.021016 AGTCATCTGACCACACCTTTCTAC 60.021 45.833 6.71 0.00 45.85 2.59
2225 3210 3.260884 TCATCTGACCACACCTTTCTACC 59.739 47.826 0.00 0.00 0.00 3.18
2226 3211 2.972348 TCTGACCACACCTTTCTACCT 58.028 47.619 0.00 0.00 0.00 3.08
2227 3212 3.314693 TCTGACCACACCTTTCTACCTT 58.685 45.455 0.00 0.00 0.00 3.50
2228 3213 3.071023 TCTGACCACACCTTTCTACCTTG 59.929 47.826 0.00 0.00 0.00 3.61
2229 3214 2.775384 TGACCACACCTTTCTACCTTGT 59.225 45.455 0.00 0.00 0.00 3.16
2230 3215 3.201266 TGACCACACCTTTCTACCTTGTT 59.799 43.478 0.00 0.00 0.00 2.83
2231 3216 4.204799 GACCACACCTTTCTACCTTGTTT 58.795 43.478 0.00 0.00 0.00 2.83
2232 3217 4.606210 ACCACACCTTTCTACCTTGTTTT 58.394 39.130 0.00 0.00 0.00 2.43
2233 3218 5.020795 ACCACACCTTTCTACCTTGTTTTT 58.979 37.500 0.00 0.00 0.00 1.94
2254 3239 3.724732 TTATGTAAAGGTGGTGGGACC 57.275 47.619 0.00 0.00 39.22 4.46
2255 3240 0.702316 ATGTAAAGGTGGTGGGACCC 59.298 55.000 2.45 2.45 37.50 4.46
2256 3241 0.698198 TGTAAAGGTGGTGGGACCCA 60.698 55.000 9.95 9.95 37.50 4.51
2257 3242 0.702316 GTAAAGGTGGTGGGACCCAT 59.298 55.000 18.51 0.32 37.50 4.00
2258 3243 0.701731 TAAAGGTGGTGGGACCCATG 59.298 55.000 18.51 0.00 37.50 3.66
2259 3244 2.730129 AAAGGTGGTGGGACCCATGC 62.730 60.000 18.51 9.82 37.50 4.06
2260 3245 3.978193 GGTGGTGGGACCCATGCA 61.978 66.667 18.51 0.00 37.50 3.96
2261 3246 2.117206 GTGGTGGGACCCATGCAA 59.883 61.111 18.51 0.00 37.50 4.08
2262 3247 1.532794 GTGGTGGGACCCATGCAAA 60.533 57.895 18.51 0.00 37.50 3.68
2263 3248 1.118356 GTGGTGGGACCCATGCAAAA 61.118 55.000 18.51 0.00 37.50 2.44
2264 3249 0.831288 TGGTGGGACCCATGCAAAAG 60.831 55.000 18.51 0.00 37.50 2.27
2265 3250 1.543944 GGTGGGACCCATGCAAAAGG 61.544 60.000 18.51 0.00 35.28 3.11
2270 3255 4.537260 CCCATGCAAAAGGGGTGA 57.463 55.556 13.05 0.00 45.54 4.02
2271 3256 1.974543 CCCATGCAAAAGGGGTGAC 59.025 57.895 13.05 0.00 45.54 3.67
2272 3257 0.542702 CCCATGCAAAAGGGGTGACT 60.543 55.000 13.05 0.00 45.54 3.41
2273 3258 1.341080 CCATGCAAAAGGGGTGACTT 58.659 50.000 0.00 0.00 0.00 3.01
2274 3259 2.524306 CCATGCAAAAGGGGTGACTTA 58.476 47.619 0.00 0.00 0.00 2.24
2275 3260 3.099141 CCATGCAAAAGGGGTGACTTAT 58.901 45.455 0.00 0.00 0.00 1.73
2276 3261 4.277476 CCATGCAAAAGGGGTGACTTATA 58.723 43.478 0.00 0.00 0.00 0.98
2277 3262 4.709397 CCATGCAAAAGGGGTGACTTATAA 59.291 41.667 0.00 0.00 0.00 0.98
2278 3263 5.163519 CCATGCAAAAGGGGTGACTTATAAG 60.164 44.000 11.05 11.05 0.00 1.73
2279 3264 4.993028 TGCAAAAGGGGTGACTTATAAGT 58.007 39.130 18.05 18.05 43.16 2.24
2280 3265 5.390387 TGCAAAAGGGGTGACTTATAAGTT 58.610 37.500 18.96 3.63 39.88 2.66
2281 3266 5.836358 TGCAAAAGGGGTGACTTATAAGTTT 59.164 36.000 18.96 5.93 39.88 2.66
2282 3267 6.325286 TGCAAAAGGGGTGACTTATAAGTTTT 59.675 34.615 18.96 11.32 39.88 2.43
2283 3268 7.506261 TGCAAAAGGGGTGACTTATAAGTTTTA 59.494 33.333 18.96 6.80 39.88 1.52
2284 3269 8.361889 GCAAAAGGGGTGACTTATAAGTTTTAA 58.638 33.333 18.96 3.77 39.88 1.52
2285 3270 9.908152 CAAAAGGGGTGACTTATAAGTTTTAAG 57.092 33.333 18.96 10.49 39.88 1.85
2286 3271 9.650714 AAAAGGGGTGACTTATAAGTTTTAAGT 57.349 29.630 18.96 15.86 41.41 2.24
2287 3272 9.650714 AAAGGGGTGACTTATAAGTTTTAAGTT 57.349 29.630 18.96 7.30 39.40 2.66
2288 3273 8.631480 AGGGGTGACTTATAAGTTTTAAGTTG 57.369 34.615 18.96 0.00 39.40 3.16
2289 3274 7.668469 AGGGGTGACTTATAAGTTTTAAGTTGG 59.332 37.037 18.96 0.00 39.40 3.77
2290 3275 7.666804 GGGGTGACTTATAAGTTTTAAGTTGGA 59.333 37.037 18.96 5.34 39.40 3.53
2291 3276 8.727910 GGGTGACTTATAAGTTTTAAGTTGGAG 58.272 37.037 18.96 0.00 39.40 3.86
2292 3277 9.281371 GGTGACTTATAAGTTTTAAGTTGGAGT 57.719 33.333 18.96 0.00 39.40 3.85
2294 3279 9.280174 TGACTTATAAGTTTTAAGTTGGAGTGG 57.720 33.333 18.96 0.00 39.40 4.00
2295 3280 9.498176 GACTTATAAGTTTTAAGTTGGAGTGGA 57.502 33.333 18.96 0.00 39.40 4.02
2296 3281 9.503399 ACTTATAAGTTTTAAGTTGGAGTGGAG 57.497 33.333 12.50 0.00 36.70 3.86
2297 3282 6.819397 ATAAGTTTTAAGTTGGAGTGGAGC 57.181 37.500 0.00 0.00 0.00 4.70
2298 3283 4.164843 AGTTTTAAGTTGGAGTGGAGCA 57.835 40.909 0.00 0.00 0.00 4.26
2299 3284 4.532834 AGTTTTAAGTTGGAGTGGAGCAA 58.467 39.130 0.00 0.00 0.00 3.91
2300 3285 4.338400 AGTTTTAAGTTGGAGTGGAGCAAC 59.662 41.667 0.00 0.00 0.00 4.17
2301 3286 3.857157 TTAAGTTGGAGTGGAGCAACT 57.143 42.857 0.00 0.00 39.27 3.16
2302 3287 2.736670 AAGTTGGAGTGGAGCAACTT 57.263 45.000 0.00 0.00 41.36 2.66
2303 3288 3.857157 AAGTTGGAGTGGAGCAACTTA 57.143 42.857 0.32 0.00 43.44 2.24
2304 3289 4.373156 AAGTTGGAGTGGAGCAACTTAT 57.627 40.909 0.32 0.00 43.44 1.73
2305 3290 3.679389 AGTTGGAGTGGAGCAACTTATG 58.321 45.455 0.00 0.00 34.63 1.90
2306 3291 3.327757 AGTTGGAGTGGAGCAACTTATGA 59.672 43.478 0.00 0.00 34.63 2.15
2307 3292 3.334583 TGGAGTGGAGCAACTTATGAC 57.665 47.619 0.00 0.00 0.00 3.06
2308 3293 2.906389 TGGAGTGGAGCAACTTATGACT 59.094 45.455 0.00 0.00 0.00 3.41
2309 3294 3.327757 TGGAGTGGAGCAACTTATGACTT 59.672 43.478 0.00 0.00 0.00 3.01
2310 3295 4.530553 TGGAGTGGAGCAACTTATGACTTA 59.469 41.667 0.00 0.00 0.00 2.24
2311 3296 5.189736 TGGAGTGGAGCAACTTATGACTTAT 59.810 40.000 0.00 0.00 0.00 1.73
2312 3297 6.382859 TGGAGTGGAGCAACTTATGACTTATA 59.617 38.462 0.00 0.00 0.00 0.98
2313 3298 7.093068 TGGAGTGGAGCAACTTATGACTTATAA 60.093 37.037 0.00 0.00 0.00 0.98
2336 3321 7.563724 AAGTTAGGGTGACTTATAAGTTGGA 57.436 36.000 18.96 4.47 39.88 3.53
2337 3322 7.750947 AGTTAGGGTGACTTATAAGTTGGAT 57.249 36.000 18.96 7.78 39.88 3.41
2338 3323 7.793036 AGTTAGGGTGACTTATAAGTTGGATC 58.207 38.462 18.96 6.91 39.88 3.36
2339 3324 5.632034 AGGGTGACTTATAAGTTGGATCC 57.368 43.478 18.96 14.76 39.88 3.36
2340 3325 4.101119 AGGGTGACTTATAAGTTGGATCCG 59.899 45.833 18.96 0.00 39.88 4.18
2341 3326 4.141779 GGGTGACTTATAAGTTGGATCCGT 60.142 45.833 18.96 0.00 39.88 4.69
2342 3327 5.425630 GGTGACTTATAAGTTGGATCCGTT 58.574 41.667 18.96 3.14 39.88 4.44
2343 3328 5.878669 GGTGACTTATAAGTTGGATCCGTTT 59.121 40.000 18.96 3.92 39.88 3.60
2344 3329 6.183360 GGTGACTTATAAGTTGGATCCGTTTG 60.183 42.308 18.96 0.00 39.88 2.93
2345 3330 6.592607 GTGACTTATAAGTTGGATCCGTTTGA 59.407 38.462 18.96 0.00 39.88 2.69
2346 3331 6.592607 TGACTTATAAGTTGGATCCGTTTGAC 59.407 38.462 18.96 2.46 39.88 3.18
2347 3332 6.469410 ACTTATAAGTTGGATCCGTTTGACA 58.531 36.000 12.50 0.00 35.21 3.58
2348 3333 6.938030 ACTTATAAGTTGGATCCGTTTGACAA 59.062 34.615 12.50 0.00 35.21 3.18
2349 3334 7.446013 ACTTATAAGTTGGATCCGTTTGACAAA 59.554 33.333 12.50 0.00 35.21 2.83
2350 3335 4.993029 AAGTTGGATCCGTTTGACAAAA 57.007 36.364 7.39 0.00 0.00 2.44
2351 3336 5.529581 AAGTTGGATCCGTTTGACAAAAT 57.470 34.783 7.39 0.00 0.00 1.82
2352 3337 6.642707 AAGTTGGATCCGTTTGACAAAATA 57.357 33.333 7.39 0.00 0.00 1.40
2353 3338 6.642707 AGTTGGATCCGTTTGACAAAATAA 57.357 33.333 7.39 0.00 0.00 1.40
2354 3339 6.677913 AGTTGGATCCGTTTGACAAAATAAG 58.322 36.000 7.39 0.00 0.00 1.73
2355 3340 6.264518 AGTTGGATCCGTTTGACAAAATAAGT 59.735 34.615 7.39 0.00 0.00 2.24
2356 3341 6.249035 TGGATCCGTTTGACAAAATAAGTC 57.751 37.500 7.39 0.00 36.55 3.01
2357 3342 5.765677 TGGATCCGTTTGACAAAATAAGTCA 59.234 36.000 7.39 0.00 43.72 3.41
2358 3343 6.084277 GGATCCGTTTGACAAAATAAGTCAC 58.916 40.000 1.27 0.00 44.95 3.67
2359 3344 6.072673 GGATCCGTTTGACAAAATAAGTCACT 60.073 38.462 1.27 0.00 44.95 3.41
2360 3345 6.687081 TCCGTTTGACAAAATAAGTCACTT 57.313 33.333 1.27 0.00 44.95 3.16
2361 3346 7.090953 TCCGTTTGACAAAATAAGTCACTTT 57.909 32.000 1.27 0.00 44.95 2.66
2362 3347 7.540299 TCCGTTTGACAAAATAAGTCACTTTT 58.460 30.769 1.27 0.00 44.95 2.27
2363 3348 8.030106 TCCGTTTGACAAAATAAGTCACTTTTT 58.970 29.630 1.27 0.00 44.95 1.94
2364 3349 8.107564 CCGTTTGACAAAATAAGTCACTTTTTG 58.892 33.333 11.60 11.60 44.95 2.44
2365 3350 7.630606 CGTTTGACAAAATAAGTCACTTTTTGC 59.369 33.333 12.71 7.83 44.95 3.68
2366 3351 8.439286 GTTTGACAAAATAAGTCACTTTTTGCA 58.561 29.630 12.71 9.71 44.95 4.08
2367 3352 7.518731 TGACAAAATAAGTCACTTTTTGCAC 57.481 32.000 12.71 8.96 41.69 4.57
2368 3353 7.319646 TGACAAAATAAGTCACTTTTTGCACT 58.680 30.769 12.71 0.00 41.69 4.40
2369 3354 7.816995 TGACAAAATAAGTCACTTTTTGCACTT 59.183 29.630 12.71 0.00 41.69 3.16
2370 3355 8.546597 ACAAAATAAGTCACTTTTTGCACTTT 57.453 26.923 12.71 0.00 41.69 2.66
2371 3356 8.998377 ACAAAATAAGTCACTTTTTGCACTTTT 58.002 25.926 12.71 0.24 41.69 2.27
2372 3357 9.476761 CAAAATAAGTCACTTTTTGCACTTTTC 57.523 29.630 0.00 0.00 34.64 2.29
2373 3358 7.449934 AATAAGTCACTTTTTGCACTTTTCG 57.550 32.000 0.00 0.00 31.80 3.46
2374 3359 4.695217 AGTCACTTTTTGCACTTTTCGA 57.305 36.364 0.00 0.00 0.00 3.71
2375 3360 4.412207 AGTCACTTTTTGCACTTTTCGAC 58.588 39.130 0.00 0.00 0.00 4.20
2376 3361 4.156008 AGTCACTTTTTGCACTTTTCGACT 59.844 37.500 0.00 0.00 0.00 4.18
2377 3362 4.857037 GTCACTTTTTGCACTTTTCGACTT 59.143 37.500 0.00 0.00 0.00 3.01
2378 3363 6.025280 GTCACTTTTTGCACTTTTCGACTTA 58.975 36.000 0.00 0.00 0.00 2.24
2379 3364 6.691388 GTCACTTTTTGCACTTTTCGACTTAT 59.309 34.615 0.00 0.00 0.00 1.73
2380 3365 7.853929 GTCACTTTTTGCACTTTTCGACTTATA 59.146 33.333 0.00 0.00 0.00 0.98
2381 3366 8.399425 TCACTTTTTGCACTTTTCGACTTATAA 58.601 29.630 0.00 0.00 0.00 0.98
2382 3367 8.682016 CACTTTTTGCACTTTTCGACTTATAAG 58.318 33.333 11.05 11.05 0.00 1.73
2383 3368 8.403236 ACTTTTTGCACTTTTCGACTTATAAGT 58.597 29.630 18.05 18.05 43.16 2.24
2384 3369 9.233232 CTTTTTGCACTTTTCGACTTATAAGTT 57.767 29.630 18.96 3.63 39.88 2.66
2385 3370 8.555166 TTTTGCACTTTTCGACTTATAAGTTG 57.445 30.769 22.32 22.32 39.88 3.16
2386 3371 6.236017 TGCACTTTTCGACTTATAAGTTGG 57.764 37.500 25.99 17.93 39.88 3.77
2387 3372 5.761234 TGCACTTTTCGACTTATAAGTTGGT 59.239 36.000 25.99 16.17 39.88 3.67
2388 3373 6.077838 GCACTTTTCGACTTATAAGTTGGTG 58.922 40.000 25.99 24.24 39.88 4.17
2389 3374 6.073440 GCACTTTTCGACTTATAAGTTGGTGA 60.073 38.462 27.32 18.11 39.88 4.02
2390 3375 7.288672 CACTTTTCGACTTATAAGTTGGTGAC 58.711 38.462 25.99 10.35 39.88 3.67
2391 3376 7.170998 CACTTTTCGACTTATAAGTTGGTGACT 59.829 37.037 25.99 9.24 39.88 3.41
2403 3388 6.783708 AAGTTGGTGACTTATTTGAAACCA 57.216 33.333 0.00 0.00 46.61 3.67
2404 3389 6.783708 AGTTGGTGACTTATTTGAAACCAA 57.216 33.333 1.07 1.07 43.50 3.67
2405 3390 7.176589 AGTTGGTGACTTATTTGAAACCAAA 57.823 32.000 6.65 0.00 46.21 3.28
2406 3391 7.039270 AGTTGGTGACTTATTTGAAACCAAAC 58.961 34.615 6.65 2.75 46.21 2.93
2407 3392 6.531503 TGGTGACTTATTTGAAACCAAACA 57.468 33.333 0.00 0.00 36.48 2.83
2408 3393 6.568869 TGGTGACTTATTTGAAACCAAACAG 58.431 36.000 0.00 0.00 36.48 3.16
2409 3394 5.983118 GGTGACTTATTTGAAACCAAACAGG 59.017 40.000 0.00 0.00 45.67 4.00
2410 3395 5.983118 GTGACTTATTTGAAACCAAACAGGG 59.017 40.000 0.00 0.00 43.89 4.45
2411 3396 4.956085 ACTTATTTGAAACCAAACAGGGC 58.044 39.130 0.00 0.00 43.89 5.19
2412 3397 2.928801 ATTTGAAACCAAACAGGGCC 57.071 45.000 0.00 0.00 43.89 5.80
2413 3398 1.872773 TTTGAAACCAAACAGGGCCT 58.127 45.000 0.00 0.00 43.89 5.19
2414 3399 1.872773 TTGAAACCAAACAGGGCCTT 58.127 45.000 1.32 0.00 43.89 4.35
2415 3400 2.757894 TGAAACCAAACAGGGCCTTA 57.242 45.000 1.32 0.00 43.89 2.69
2416 3401 3.033659 TGAAACCAAACAGGGCCTTAA 57.966 42.857 1.32 0.00 43.89 1.85
2417 3402 2.696187 TGAAACCAAACAGGGCCTTAAC 59.304 45.455 1.32 0.00 43.89 2.01
2418 3403 1.712056 AACCAAACAGGGCCTTAACC 58.288 50.000 1.32 0.00 43.89 2.85
2419 3404 0.857675 ACCAAACAGGGCCTTAACCT 59.142 50.000 1.32 0.00 43.89 3.50
2420 3405 1.219469 ACCAAACAGGGCCTTAACCTT 59.781 47.619 1.32 0.00 43.89 3.50
2421 3406 2.447811 ACCAAACAGGGCCTTAACCTTA 59.552 45.455 1.32 0.00 43.89 2.69
2422 3407 2.823747 CCAAACAGGGCCTTAACCTTAC 59.176 50.000 1.32 0.00 35.78 2.34
2423 3408 3.492337 CAAACAGGGCCTTAACCTTACA 58.508 45.455 1.32 0.00 35.78 2.41
2424 3409 3.887916 AACAGGGCCTTAACCTTACAA 57.112 42.857 1.32 0.00 35.78 2.41
2425 3410 3.887916 ACAGGGCCTTAACCTTACAAA 57.112 42.857 1.32 0.00 35.78 2.83
2426 3411 3.493334 ACAGGGCCTTAACCTTACAAAC 58.507 45.455 1.32 0.00 35.78 2.93
2427 3412 3.117436 ACAGGGCCTTAACCTTACAAACA 60.117 43.478 1.32 0.00 35.78 2.83
2428 3413 4.086457 CAGGGCCTTAACCTTACAAACAT 58.914 43.478 1.32 0.00 35.78 2.71
2429 3414 4.082245 CAGGGCCTTAACCTTACAAACATG 60.082 45.833 1.32 0.00 35.78 3.21
2430 3415 3.368013 GGGCCTTAACCTTACAAACATGC 60.368 47.826 0.84 0.00 0.00 4.06
2431 3416 3.368013 GGCCTTAACCTTACAAACATGCC 60.368 47.826 0.00 0.00 0.00 4.40
2432 3417 3.257127 GCCTTAACCTTACAAACATGCCA 59.743 43.478 0.00 0.00 0.00 4.92
2433 3418 4.805219 CCTTAACCTTACAAACATGCCAC 58.195 43.478 0.00 0.00 0.00 5.01
2434 3419 4.472286 CTTAACCTTACAAACATGCCACG 58.528 43.478 0.00 0.00 0.00 4.94
2435 3420 0.596082 ACCTTACAAACATGCCACGC 59.404 50.000 0.00 0.00 0.00 5.34
2436 3421 0.595588 CCTTACAAACATGCCACGCA 59.404 50.000 0.00 0.00 44.86 5.24
2437 3422 1.665735 CCTTACAAACATGCCACGCAC 60.666 52.381 0.00 0.00 43.04 5.34
2438 3423 0.040870 TTACAAACATGCCACGCACG 60.041 50.000 0.00 0.00 43.04 5.34
2439 3424 2.450960 TACAAACATGCCACGCACGC 62.451 55.000 0.00 0.00 43.04 5.34
2440 3425 3.286751 AAACATGCCACGCACGCT 61.287 55.556 0.00 0.00 43.04 5.07
2441 3426 2.844451 AAACATGCCACGCACGCTT 61.844 52.632 0.00 0.00 43.04 4.68
2442 3427 2.731587 AAACATGCCACGCACGCTTC 62.732 55.000 0.00 0.00 43.04 3.86
2443 3428 4.465512 CATGCCACGCACGCTTCC 62.466 66.667 0.00 0.00 43.04 3.46
2448 3433 4.505217 CACGCACGCTTCCGCATC 62.505 66.667 0.00 0.00 38.22 3.91
2451 3436 3.567797 GCACGCTTCCGCATCCTC 61.568 66.667 0.00 0.00 38.22 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 3.980646 TGTGTCAAAATTTGTCCGAGG 57.019 42.857 5.56 0.00 0.00 4.63
66 67 6.797033 GTCTTATGTGTCAAAATTTGTCCGAG 59.203 38.462 5.56 0.00 0.00 4.63
67 68 6.293735 GGTCTTATGTGTCAAAATTTGTCCGA 60.294 38.462 5.56 0.00 0.00 4.55
68 69 5.856455 GGTCTTATGTGTCAAAATTTGTCCG 59.144 40.000 5.56 0.00 0.00 4.79
69 70 6.156519 GGGTCTTATGTGTCAAAATTTGTCC 58.843 40.000 5.56 0.00 0.00 4.02
78 79 2.232941 GACGAGGGGTCTTATGTGTCAA 59.767 50.000 0.00 0.00 42.62 3.18
141 142 2.103094 TCTGCCAAGTATGAATCCGGAG 59.897 50.000 11.34 0.00 0.00 4.63
170 172 7.496529 TTCCTATCGGAATGAAAATGTGATC 57.503 36.000 0.00 0.00 44.28 2.92
213 215 0.247655 CACGCATCGCATGTAACCAC 60.248 55.000 0.00 0.00 0.00 4.16
257 999 9.231297 CCACCATGTTCTTAGAATAGAAAAGAA 57.769 33.333 0.00 0.00 36.01 2.52
258 1000 7.336931 GCCACCATGTTCTTAGAATAGAAAAGA 59.663 37.037 0.00 0.00 36.01 2.52
259 1001 7.121168 TGCCACCATGTTCTTAGAATAGAAAAG 59.879 37.037 0.00 0.00 36.01 2.27
260 1002 6.945435 TGCCACCATGTTCTTAGAATAGAAAA 59.055 34.615 0.00 0.00 36.01 2.29
266 1008 3.445096 GCTTGCCACCATGTTCTTAGAAT 59.555 43.478 0.00 0.00 0.00 2.40
298 1040 5.061179 TGACTTTTCCCTTCTTTTCGGTAG 58.939 41.667 0.00 0.00 0.00 3.18
299 1041 5.038651 TGACTTTTCCCTTCTTTTCGGTA 57.961 39.130 0.00 0.00 0.00 4.02
300 1042 3.893521 TGACTTTTCCCTTCTTTTCGGT 58.106 40.909 0.00 0.00 0.00 4.69
301 1043 4.798574 CATGACTTTTCCCTTCTTTTCGG 58.201 43.478 0.00 0.00 0.00 4.30
302 1044 4.022849 AGCATGACTTTTCCCTTCTTTTCG 60.023 41.667 0.00 0.00 0.00 3.46
308 1050 1.740025 CGGAGCATGACTTTTCCCTTC 59.260 52.381 0.00 0.00 0.00 3.46
387 1135 4.428209 AGTCTAATCAGCAACATCTCACG 58.572 43.478 0.00 0.00 0.00 4.35
416 1164 2.910319 AGTGACACATAAACTAGGGGCA 59.090 45.455 8.59 0.00 0.00 5.36
417 1165 3.532542 GAGTGACACATAAACTAGGGGC 58.467 50.000 8.59 0.00 0.00 5.80
455 1203 0.967380 GCCAAACCCATAGCTGCAGT 60.967 55.000 16.64 4.79 0.00 4.40
456 1204 0.682209 AGCCAAACCCATAGCTGCAG 60.682 55.000 10.11 10.11 33.41 4.41
457 1205 0.680921 GAGCCAAACCCATAGCTGCA 60.681 55.000 1.02 0.00 35.23 4.41
458 1206 1.387295 GGAGCCAAACCCATAGCTGC 61.387 60.000 0.00 0.00 35.23 5.25
459 1207 1.097547 CGGAGCCAAACCCATAGCTG 61.098 60.000 0.00 0.00 35.23 4.24
460 1208 1.224592 CGGAGCCAAACCCATAGCT 59.775 57.895 0.00 0.00 38.56 3.32
461 1209 1.823899 CCGGAGCCAAACCCATAGC 60.824 63.158 0.00 0.00 0.00 2.97
479 1227 8.995906 CCAAATATACGTCGAAAATGAAAGAAC 58.004 33.333 0.00 0.00 0.00 3.01
512 1260 2.435741 GTCCAAAGACAGCGACGAG 58.564 57.895 0.00 0.00 42.99 4.18
515 1263 1.058404 GTACGTCCAAAGACAGCGAC 58.942 55.000 0.00 0.00 43.73 5.19
590 1339 2.449548 CGCAAGTGGAGCAGTAGTG 58.550 57.895 0.00 0.00 0.00 2.74
652 1404 3.352648 TGTGTTAGGTACTACCGGGTAC 58.647 50.000 6.32 9.53 44.90 3.34
653 1405 3.730215 TGTGTTAGGTACTACCGGGTA 57.270 47.619 6.32 6.73 44.90 3.69
654 1406 2.603075 TGTGTTAGGTACTACCGGGT 57.397 50.000 6.32 4.46 44.90 5.28
655 1407 2.827921 ACTTGTGTTAGGTACTACCGGG 59.172 50.000 6.32 0.00 44.90 5.73
656 1408 3.367703 CCACTTGTGTTAGGTACTACCGG 60.368 52.174 0.00 0.00 44.90 5.28
657 1409 3.507233 TCCACTTGTGTTAGGTACTACCG 59.493 47.826 0.00 0.00 44.90 4.02
658 1410 4.525874 ACTCCACTTGTGTTAGGTACTACC 59.474 45.833 0.00 0.00 42.67 3.18
659 1411 5.718724 ACTCCACTTGTGTTAGGTACTAC 57.281 43.478 0.00 0.00 42.67 2.73
697 1449 2.658268 GCTTTGTGGCGTTGGTGC 60.658 61.111 0.00 0.00 0.00 5.01
702 1454 1.066257 CTGCTTGCTTTGTGGCGTT 59.934 52.632 0.00 0.00 34.52 4.84
752 1506 2.182537 GGCTGCAAAAGGCCATCG 59.817 61.111 5.01 0.00 46.84 3.84
915 1673 7.179694 TCCTAGAGGCTAGAGAGTAGAGTAATC 59.820 44.444 0.00 0.00 34.44 1.75
929 1687 6.894654 TGATCTAATCCAATCCTAGAGGCTAG 59.105 42.308 0.00 0.00 34.44 3.42
930 1688 6.805150 TGATCTAATCCAATCCTAGAGGCTA 58.195 40.000 0.00 0.00 34.44 3.93
992 1750 1.822371 GGTCGGTGGCCATTTGTTTAT 59.178 47.619 9.72 0.00 0.00 1.40
1050 1814 2.915659 TCCGTCGTTGCACCTCCT 60.916 61.111 0.00 0.00 0.00 3.69
1052 1816 3.112709 GCTCCGTCGTTGCACCTC 61.113 66.667 0.00 0.00 0.00 3.85
1118 1885 1.192146 AGCACCGAGTAAAGGCAGGA 61.192 55.000 0.00 0.00 0.00 3.86
1119 1886 0.741221 GAGCACCGAGTAAAGGCAGG 60.741 60.000 0.00 0.00 0.00 4.85
1120 1887 0.741221 GGAGCACCGAGTAAAGGCAG 60.741 60.000 0.00 0.00 0.00 4.85
1193 1968 2.100418 GTCGTCCAGGGTATTGTAGTCC 59.900 54.545 0.00 0.00 0.00 3.85
1194 1969 2.223433 CGTCGTCCAGGGTATTGTAGTC 60.223 54.545 0.00 0.00 0.00 2.59
1195 1970 1.747355 CGTCGTCCAGGGTATTGTAGT 59.253 52.381 0.00 0.00 0.00 2.73
1196 1971 2.019249 TCGTCGTCCAGGGTATTGTAG 58.981 52.381 0.00 0.00 0.00 2.74
1197 1972 1.745087 GTCGTCGTCCAGGGTATTGTA 59.255 52.381 0.00 0.00 0.00 2.41
1198 1973 0.529378 GTCGTCGTCCAGGGTATTGT 59.471 55.000 0.00 0.00 0.00 2.71
1347 2125 1.520342 GACTCGAGTGCCTGCATCC 60.520 63.158 25.58 0.40 0.00 3.51
1348 2126 1.520342 GGACTCGAGTGCCTGCATC 60.520 63.158 25.58 5.36 0.00 3.91
1378 2330 2.033911 TGCCGCTGCATTTGAGGA 59.966 55.556 0.00 0.00 44.23 3.71
1435 2395 1.965930 GGTCAGTCGCCATGCAACA 60.966 57.895 0.00 0.00 0.00 3.33
1493 2459 2.833582 CTCCTCCTTCCGCGGCTA 60.834 66.667 23.51 10.22 0.00 3.93
1650 2628 3.376935 CTGCTCGCCAGTTCCCGAT 62.377 63.158 0.00 0.00 36.79 4.18
1659 2637 4.147449 ATACGCTGCTGCTCGCCA 62.147 61.111 14.03 4.23 38.05 5.69
1674 2652 0.035820 GCCGTTGGTTCACCCTCATA 60.036 55.000 0.00 0.00 34.29 2.15
1675 2653 1.303317 GCCGTTGGTTCACCCTCAT 60.303 57.895 0.00 0.00 34.29 2.90
1676 2654 2.112297 GCCGTTGGTTCACCCTCA 59.888 61.111 0.00 0.00 34.29 3.86
1734 2715 3.673484 CACCAAACCAGGCCAGCG 61.673 66.667 5.01 0.00 0.00 5.18
1785 2766 1.444553 GCGAGTCGGGAGTTGACAG 60.445 63.158 15.52 0.00 38.83 3.51
1813 2794 2.802667 CGGATTGCTCGCGGACAAG 61.803 63.158 17.35 4.70 0.00 3.16
1864 2845 1.810030 CGTCCGCTGCCTAAAGTCC 60.810 63.158 0.00 0.00 0.00 3.85
1972 2953 4.566004 TCCTGTAGACAAATGAAGGAACG 58.434 43.478 0.00 0.00 30.97 3.95
1980 2961 5.152623 TCTGGTTCTCCTGTAGACAAATG 57.847 43.478 0.00 0.00 32.51 2.32
1991 2972 2.769095 GCTGTCCTTATCTGGTTCTCCT 59.231 50.000 0.00 0.00 34.23 3.69
2030 3011 0.941542 GTGTACAACGAGCTTTGGCA 59.058 50.000 0.00 0.00 41.70 4.92
2058 3039 2.875317 GAGCCAGAAAAATCGAGGATCC 59.125 50.000 2.48 2.48 0.00 3.36
2106 3091 9.668497 GTGACTTACTGAAATTAAATAGACCCT 57.332 33.333 0.00 0.00 0.00 4.34
2107 3092 8.890718 GGTGACTTACTGAAATTAAATAGACCC 58.109 37.037 0.00 0.00 0.00 4.46
2108 3093 9.668497 AGGTGACTTACTGAAATTAAATAGACC 57.332 33.333 0.00 0.00 37.44 3.85
2144 3129 7.964604 AGTTACTGATTTTAAGTCACCTGAC 57.035 36.000 0.00 0.00 45.08 3.51
2155 3140 9.090692 GGCGTGACTTATAAGTTACTGATTTTA 57.909 33.333 27.98 0.00 41.71 1.52
2156 3141 7.201496 CGGCGTGACTTATAAGTTACTGATTTT 60.201 37.037 27.98 2.53 41.71 1.82
2157 3142 6.255020 CGGCGTGACTTATAAGTTACTGATTT 59.745 38.462 27.98 3.18 41.71 2.17
2158 3143 5.747197 CGGCGTGACTTATAAGTTACTGATT 59.253 40.000 27.98 3.81 41.71 2.57
2159 3144 5.279384 CGGCGTGACTTATAAGTTACTGAT 58.721 41.667 27.98 4.46 41.71 2.90
2160 3145 4.439153 CCGGCGTGACTTATAAGTTACTGA 60.439 45.833 27.98 8.02 41.71 3.41
2161 3146 3.795101 CCGGCGTGACTTATAAGTTACTG 59.205 47.826 27.98 23.08 41.71 2.74
2162 3147 3.445096 ACCGGCGTGACTTATAAGTTACT 59.555 43.478 27.98 13.50 41.71 2.24
2163 3148 3.774066 ACCGGCGTGACTTATAAGTTAC 58.226 45.455 23.81 23.81 40.82 2.50
2164 3149 4.454728 AACCGGCGTGACTTATAAGTTA 57.545 40.909 18.96 12.54 39.88 2.24
2165 3150 3.323751 AACCGGCGTGACTTATAAGTT 57.676 42.857 18.96 3.63 39.88 2.66
2166 3151 3.323751 AAACCGGCGTGACTTATAAGT 57.676 42.857 18.05 18.05 43.16 2.24
2167 3152 5.978934 ATTAAACCGGCGTGACTTATAAG 57.021 39.130 11.05 11.05 0.00 1.73
2168 3153 6.257630 GGTAATTAAACCGGCGTGACTTATAA 59.742 38.462 6.01 0.00 0.00 0.98
2169 3154 5.752955 GGTAATTAAACCGGCGTGACTTATA 59.247 40.000 6.01 0.00 0.00 0.98
2170 3155 4.571984 GGTAATTAAACCGGCGTGACTTAT 59.428 41.667 6.01 0.00 0.00 1.73
2171 3156 3.932089 GGTAATTAAACCGGCGTGACTTA 59.068 43.478 6.01 0.00 0.00 2.24
2172 3157 2.743664 GGTAATTAAACCGGCGTGACTT 59.256 45.455 6.01 0.00 0.00 3.01
2173 3158 2.289569 TGGTAATTAAACCGGCGTGACT 60.290 45.455 6.01 0.00 42.91 3.41
2174 3159 2.075338 TGGTAATTAAACCGGCGTGAC 58.925 47.619 6.01 0.00 42.91 3.67
2175 3160 2.075338 GTGGTAATTAAACCGGCGTGA 58.925 47.619 6.01 0.00 42.91 4.35
2176 3161 1.130938 GGTGGTAATTAAACCGGCGTG 59.869 52.381 6.01 0.00 42.91 5.34
2177 3162 1.271271 TGGTGGTAATTAAACCGGCGT 60.271 47.619 6.01 0.00 42.91 5.68
2178 3163 1.451067 TGGTGGTAATTAAACCGGCG 58.549 50.000 0.00 0.00 42.91 6.46
2179 3164 5.125900 ACTTATTGGTGGTAATTAAACCGGC 59.874 40.000 0.00 0.53 42.91 6.13
2180 3165 6.374894 TGACTTATTGGTGGTAATTAAACCGG 59.625 38.462 0.00 0.00 42.91 5.28
2181 3166 7.380431 TGACTTATTGGTGGTAATTAAACCG 57.620 36.000 11.93 3.02 42.91 4.44
2182 3167 9.185680 AGATGACTTATTGGTGGTAATTAAACC 57.814 33.333 10.42 10.42 40.19 3.27
2184 3169 9.967451 TCAGATGACTTATTGGTGGTAATTAAA 57.033 29.630 0.00 0.00 0.00 1.52
2185 3170 9.391006 GTCAGATGACTTATTGGTGGTAATTAA 57.609 33.333 5.72 0.00 41.65 1.40
2186 3171 7.990886 GGTCAGATGACTTATTGGTGGTAATTA 59.009 37.037 12.43 0.00 44.20 1.40
2187 3172 6.828785 GGTCAGATGACTTATTGGTGGTAATT 59.171 38.462 12.43 0.00 44.20 1.40
2188 3173 6.069673 TGGTCAGATGACTTATTGGTGGTAAT 60.070 38.462 12.43 0.00 44.20 1.89
2189 3174 5.249622 TGGTCAGATGACTTATTGGTGGTAA 59.750 40.000 12.43 0.00 44.20 2.85
2190 3175 4.780554 TGGTCAGATGACTTATTGGTGGTA 59.219 41.667 12.43 0.00 44.20 3.25
2191 3176 3.587061 TGGTCAGATGACTTATTGGTGGT 59.413 43.478 12.43 0.00 44.20 4.16
2192 3177 3.941483 GTGGTCAGATGACTTATTGGTGG 59.059 47.826 12.43 0.00 44.20 4.61
2193 3178 4.393062 GTGTGGTCAGATGACTTATTGGTG 59.607 45.833 12.43 0.00 44.20 4.17
2194 3179 4.565652 GGTGTGGTCAGATGACTTATTGGT 60.566 45.833 12.43 0.00 44.20 3.67
2195 3180 3.941483 GGTGTGGTCAGATGACTTATTGG 59.059 47.826 12.43 0.00 44.20 3.16
2196 3181 4.836825 AGGTGTGGTCAGATGACTTATTG 58.163 43.478 12.43 0.00 44.20 1.90
2197 3182 5.505181 AAGGTGTGGTCAGATGACTTATT 57.495 39.130 12.43 0.00 44.20 1.40
2198 3183 5.249393 AGAAAGGTGTGGTCAGATGACTTAT 59.751 40.000 12.43 0.00 44.20 1.73
2199 3184 4.593206 AGAAAGGTGTGGTCAGATGACTTA 59.407 41.667 12.43 0.40 44.20 2.24
2200 3185 3.392616 AGAAAGGTGTGGTCAGATGACTT 59.607 43.478 12.43 0.00 44.20 3.01
2201 3186 2.975489 AGAAAGGTGTGGTCAGATGACT 59.025 45.455 12.43 0.00 44.20 3.41
2202 3187 3.409026 AGAAAGGTGTGGTCAGATGAC 57.591 47.619 4.33 4.33 44.04 3.06
2203 3188 3.260884 GGTAGAAAGGTGTGGTCAGATGA 59.739 47.826 0.00 0.00 0.00 2.92
2204 3189 3.261897 AGGTAGAAAGGTGTGGTCAGATG 59.738 47.826 0.00 0.00 0.00 2.90
2205 3190 3.521727 AGGTAGAAAGGTGTGGTCAGAT 58.478 45.455 0.00 0.00 0.00 2.90
2206 3191 2.972348 AGGTAGAAAGGTGTGGTCAGA 58.028 47.619 0.00 0.00 0.00 3.27
2207 3192 3.181454 ACAAGGTAGAAAGGTGTGGTCAG 60.181 47.826 0.00 0.00 0.00 3.51
2208 3193 2.775384 ACAAGGTAGAAAGGTGTGGTCA 59.225 45.455 0.00 0.00 0.00 4.02
2209 3194 3.487120 ACAAGGTAGAAAGGTGTGGTC 57.513 47.619 0.00 0.00 0.00 4.02
2210 3195 3.945640 AACAAGGTAGAAAGGTGTGGT 57.054 42.857 0.00 0.00 0.00 4.16
2211 3196 5.592104 AAAAACAAGGTAGAAAGGTGTGG 57.408 39.130 0.00 0.00 0.00 4.17
2231 3216 4.833938 GGTCCCACCACCTTTACATAAAAA 59.166 41.667 0.00 0.00 38.42 1.94
2232 3217 4.409187 GGTCCCACCACCTTTACATAAAA 58.591 43.478 0.00 0.00 38.42 1.52
2233 3218 3.245336 GGGTCCCACCACCTTTACATAAA 60.245 47.826 1.78 0.00 41.02 1.40
2234 3219 2.309458 GGGTCCCACCACCTTTACATAA 59.691 50.000 1.78 0.00 41.02 1.90
2235 3220 1.917568 GGGTCCCACCACCTTTACATA 59.082 52.381 1.78 0.00 41.02 2.29
2236 3221 0.702316 GGGTCCCACCACCTTTACAT 59.298 55.000 1.78 0.00 41.02 2.29
2237 3222 0.698198 TGGGTCCCACCACCTTTACA 60.698 55.000 6.47 0.00 41.02 2.41
2238 3223 0.702316 ATGGGTCCCACCACCTTTAC 59.298 55.000 14.57 0.00 44.72 2.01
2239 3224 0.701731 CATGGGTCCCACCACCTTTA 59.298 55.000 14.57 0.00 44.72 1.85
2240 3225 1.464722 CATGGGTCCCACCACCTTT 59.535 57.895 14.57 0.00 44.72 3.11
2241 3226 3.180282 CATGGGTCCCACCACCTT 58.820 61.111 14.57 0.00 44.72 3.50
2242 3227 3.661648 GCATGGGTCCCACCACCT 61.662 66.667 14.57 0.00 44.72 4.00
2243 3228 3.521765 TTGCATGGGTCCCACCACC 62.522 63.158 14.57 2.26 44.72 4.61
2244 3229 1.118356 TTTTGCATGGGTCCCACCAC 61.118 55.000 14.57 6.21 44.72 4.16
2245 3230 0.831288 CTTTTGCATGGGTCCCACCA 60.831 55.000 14.57 11.02 46.24 4.17
2246 3231 1.543944 CCTTTTGCATGGGTCCCACC 61.544 60.000 14.57 8.17 35.80 4.61
2247 3232 1.543944 CCCTTTTGCATGGGTCCCAC 61.544 60.000 14.57 1.42 35.80 4.61
2248 3233 1.229145 CCCTTTTGCATGGGTCCCA 60.229 57.895 14.64 14.64 38.65 4.37
2249 3234 1.989508 CCCCTTTTGCATGGGTCCC 60.990 63.158 15.82 0.00 41.82 4.46
2250 3235 3.712287 CCCCTTTTGCATGGGTCC 58.288 61.111 15.82 0.00 41.82 4.46
2253 3238 0.542702 AGTCACCCCTTTTGCATGGG 60.543 55.000 11.68 11.68 45.34 4.00
2254 3239 1.341080 AAGTCACCCCTTTTGCATGG 58.659 50.000 0.00 0.00 0.00 3.66
2255 3240 5.418840 ACTTATAAGTCACCCCTTTTGCATG 59.581 40.000 12.50 0.00 32.86 4.06
2256 3241 5.580022 ACTTATAAGTCACCCCTTTTGCAT 58.420 37.500 12.50 0.00 32.86 3.96
2257 3242 4.993028 ACTTATAAGTCACCCCTTTTGCA 58.007 39.130 12.50 0.00 32.86 4.08
2258 3243 5.977489 AACTTATAAGTCACCCCTTTTGC 57.023 39.130 18.28 0.00 38.57 3.68
2259 3244 9.908152 CTTAAAACTTATAAGTCACCCCTTTTG 57.092 33.333 18.28 7.29 38.57 2.44
2260 3245 9.650714 ACTTAAAACTTATAAGTCACCCCTTTT 57.349 29.630 18.28 14.40 38.85 2.27
2261 3246 9.650714 AACTTAAAACTTATAAGTCACCCCTTT 57.349 29.630 18.28 15.02 41.49 3.11
2262 3247 9.074576 CAACTTAAAACTTATAAGTCACCCCTT 57.925 33.333 18.28 5.47 41.49 3.95
2263 3248 7.668469 CCAACTTAAAACTTATAAGTCACCCCT 59.332 37.037 18.28 0.00 41.49 4.79
2264 3249 7.666804 TCCAACTTAAAACTTATAAGTCACCCC 59.333 37.037 18.28 0.00 41.49 4.95
2265 3250 8.625786 TCCAACTTAAAACTTATAAGTCACCC 57.374 34.615 18.28 0.00 41.49 4.61
2266 3251 9.281371 ACTCCAACTTAAAACTTATAAGTCACC 57.719 33.333 18.28 0.00 41.49 4.02
2268 3253 9.280174 CCACTCCAACTTAAAACTTATAAGTCA 57.720 33.333 18.28 4.72 41.49 3.41
2269 3254 9.498176 TCCACTCCAACTTAAAACTTATAAGTC 57.502 33.333 18.28 0.00 41.49 3.01
2270 3255 9.503399 CTCCACTCCAACTTAAAACTTATAAGT 57.497 33.333 12.50 12.50 43.57 2.24
2271 3256 8.451748 GCTCCACTCCAACTTAAAACTTATAAG 58.548 37.037 11.05 11.05 36.62 1.73
2272 3257 7.940137 TGCTCCACTCCAACTTAAAACTTATAA 59.060 33.333 0.00 0.00 0.00 0.98
2273 3258 7.455058 TGCTCCACTCCAACTTAAAACTTATA 58.545 34.615 0.00 0.00 0.00 0.98
2274 3259 6.303839 TGCTCCACTCCAACTTAAAACTTAT 58.696 36.000 0.00 0.00 0.00 1.73
2275 3260 5.686753 TGCTCCACTCCAACTTAAAACTTA 58.313 37.500 0.00 0.00 0.00 2.24
2276 3261 4.532834 TGCTCCACTCCAACTTAAAACTT 58.467 39.130 0.00 0.00 0.00 2.66
2277 3262 4.164843 TGCTCCACTCCAACTTAAAACT 57.835 40.909 0.00 0.00 0.00 2.66
2278 3263 4.338400 AGTTGCTCCACTCCAACTTAAAAC 59.662 41.667 0.56 0.00 46.86 2.43
2279 3264 4.532834 AGTTGCTCCACTCCAACTTAAAA 58.467 39.130 0.56 0.00 46.86 1.52
2280 3265 4.164843 AGTTGCTCCACTCCAACTTAAA 57.835 40.909 0.56 0.00 46.86 1.52
2281 3266 3.857157 AGTTGCTCCACTCCAACTTAA 57.143 42.857 0.56 0.00 46.86 1.85
2285 3270 3.437049 GTCATAAGTTGCTCCACTCCAAC 59.563 47.826 0.00 0.00 41.13 3.77
2286 3271 3.327757 AGTCATAAGTTGCTCCACTCCAA 59.672 43.478 0.00 0.00 0.00 3.53
2287 3272 2.906389 AGTCATAAGTTGCTCCACTCCA 59.094 45.455 0.00 0.00 0.00 3.86
2288 3273 3.618690 AGTCATAAGTTGCTCCACTCC 57.381 47.619 0.00 0.00 0.00 3.85
2289 3274 8.359060 CTTATAAGTCATAAGTTGCTCCACTC 57.641 38.462 4.18 0.00 40.84 3.51
2310 3295 9.275572 TCCAACTTATAAGTCACCCTAACTTAT 57.724 33.333 18.28 11.86 46.48 1.73
2311 3296 8.669055 TCCAACTTATAAGTCACCCTAACTTA 57.331 34.615 18.28 0.00 41.91 2.24
2312 3297 7.563724 TCCAACTTATAAGTCACCCTAACTT 57.436 36.000 18.28 0.00 38.57 2.66
2313 3298 7.147532 GGATCCAACTTATAAGTCACCCTAACT 60.148 40.741 18.28 0.00 38.57 2.24
2314 3299 6.990939 GGATCCAACTTATAAGTCACCCTAAC 59.009 42.308 18.28 6.14 38.57 2.34
2315 3300 6.183360 CGGATCCAACTTATAAGTCACCCTAA 60.183 42.308 18.28 1.76 38.57 2.69
2316 3301 5.303589 CGGATCCAACTTATAAGTCACCCTA 59.696 44.000 18.28 2.70 38.57 3.53
2317 3302 4.101119 CGGATCCAACTTATAAGTCACCCT 59.899 45.833 18.28 0.00 38.57 4.34
2318 3303 4.141779 ACGGATCCAACTTATAAGTCACCC 60.142 45.833 18.28 13.30 38.57 4.61
2319 3304 5.019785 ACGGATCCAACTTATAAGTCACC 57.980 43.478 18.28 14.59 38.57 4.02
2320 3305 6.592607 TCAAACGGATCCAACTTATAAGTCAC 59.407 38.462 18.28 8.29 38.57 3.67
2321 3306 6.592607 GTCAAACGGATCCAACTTATAAGTCA 59.407 38.462 18.28 6.48 38.57 3.41
2322 3307 6.592607 TGTCAAACGGATCCAACTTATAAGTC 59.407 38.462 18.28 5.73 38.57 3.01
2323 3308 6.469410 TGTCAAACGGATCCAACTTATAAGT 58.531 36.000 12.50 12.50 42.04 2.24
2324 3309 6.978343 TGTCAAACGGATCCAACTTATAAG 57.022 37.500 13.41 11.05 0.00 1.73
2325 3310 7.747155 TTTGTCAAACGGATCCAACTTATAA 57.253 32.000 13.41 0.00 0.00 0.98
2326 3311 7.747155 TTTTGTCAAACGGATCCAACTTATA 57.253 32.000 13.41 0.00 0.00 0.98
2327 3312 6.642707 TTTTGTCAAACGGATCCAACTTAT 57.357 33.333 13.41 0.00 0.00 1.73
2328 3313 6.642707 ATTTTGTCAAACGGATCCAACTTA 57.357 33.333 13.41 0.00 0.00 2.24
2329 3314 4.993029 TTTTGTCAAACGGATCCAACTT 57.007 36.364 13.41 0.00 0.00 2.66
2330 3315 6.264518 ACTTATTTTGTCAAACGGATCCAACT 59.735 34.615 13.41 0.00 0.00 3.16
2331 3316 6.443792 ACTTATTTTGTCAAACGGATCCAAC 58.556 36.000 13.41 2.12 0.00 3.77
2332 3317 6.263392 TGACTTATTTTGTCAAACGGATCCAA 59.737 34.615 13.41 0.00 40.89 3.53
2333 3318 5.765677 TGACTTATTTTGTCAAACGGATCCA 59.234 36.000 13.41 0.00 40.89 3.41
2334 3319 6.072673 AGTGACTTATTTTGTCAAACGGATCC 60.073 38.462 0.00 0.00 44.63 3.36
2335 3320 6.899114 AGTGACTTATTTTGTCAAACGGATC 58.101 36.000 0.00 0.00 44.63 3.36
2336 3321 6.877611 AGTGACTTATTTTGTCAAACGGAT 57.122 33.333 0.00 0.00 44.63 4.18
2337 3322 6.687081 AAGTGACTTATTTTGTCAAACGGA 57.313 33.333 0.00 0.00 44.63 4.69
2338 3323 7.749539 AAAAGTGACTTATTTTGTCAAACGG 57.250 32.000 0.00 0.00 44.63 4.44
2339 3324 7.630606 GCAAAAAGTGACTTATTTTGTCAAACG 59.369 33.333 18.40 0.00 44.63 3.60
2340 3325 8.439286 TGCAAAAAGTGACTTATTTTGTCAAAC 58.561 29.630 18.40 7.02 44.63 2.93
2341 3326 8.439286 GTGCAAAAAGTGACTTATTTTGTCAAA 58.561 29.630 18.40 0.00 44.63 2.69
2342 3327 7.816995 AGTGCAAAAAGTGACTTATTTTGTCAA 59.183 29.630 18.40 7.17 44.63 3.18
2343 3328 7.319646 AGTGCAAAAAGTGACTTATTTTGTCA 58.680 30.769 18.40 14.83 42.89 3.58
2344 3329 7.755582 AGTGCAAAAAGTGACTTATTTTGTC 57.244 32.000 18.40 13.16 42.89 3.18
2345 3330 8.546597 AAAGTGCAAAAAGTGACTTATTTTGT 57.453 26.923 18.40 2.76 42.89 2.83
2346 3331 9.476761 GAAAAGTGCAAAAAGTGACTTATTTTG 57.523 29.630 14.87 14.87 43.47 2.44
2347 3332 8.379902 CGAAAAGTGCAAAAAGTGACTTATTTT 58.620 29.630 0.00 0.00 31.47 1.82
2348 3333 7.757624 TCGAAAAGTGCAAAAAGTGACTTATTT 59.242 29.630 0.00 0.00 31.47 1.40
2349 3334 7.220108 GTCGAAAAGTGCAAAAAGTGACTTATT 59.780 33.333 0.00 0.00 31.47 1.40
2350 3335 6.691388 GTCGAAAAGTGCAAAAAGTGACTTAT 59.309 34.615 0.00 0.00 31.47 1.73
2351 3336 6.025280 GTCGAAAAGTGCAAAAAGTGACTTA 58.975 36.000 0.00 0.00 31.47 2.24
2352 3337 4.857037 GTCGAAAAGTGCAAAAAGTGACTT 59.143 37.500 0.00 0.00 32.40 3.01
2353 3338 4.156008 AGTCGAAAAGTGCAAAAAGTGACT 59.844 37.500 0.00 0.00 0.00 3.41
2354 3339 4.412207 AGTCGAAAAGTGCAAAAAGTGAC 58.588 39.130 0.00 0.00 0.00 3.67
2355 3340 4.695217 AGTCGAAAAGTGCAAAAAGTGA 57.305 36.364 0.00 0.00 0.00 3.41
2356 3341 8.555166 TTATAAGTCGAAAAGTGCAAAAAGTG 57.445 30.769 0.00 0.00 0.00 3.16
2357 3342 8.403236 ACTTATAAGTCGAAAAGTGCAAAAAGT 58.597 29.630 12.50 0.00 32.86 2.66
2358 3343 8.782533 ACTTATAAGTCGAAAAGTGCAAAAAG 57.217 30.769 12.50 0.00 32.86 2.27
2359 3344 9.015577 CAACTTATAAGTCGAAAAGTGCAAAAA 57.984 29.630 18.28 0.00 38.57 1.94
2360 3345 7.646130 CCAACTTATAAGTCGAAAAGTGCAAAA 59.354 33.333 18.28 0.00 38.57 2.44
2361 3346 7.136119 CCAACTTATAAGTCGAAAAGTGCAAA 58.864 34.615 18.28 0.00 38.57 3.68
2362 3347 6.261381 ACCAACTTATAAGTCGAAAAGTGCAA 59.739 34.615 18.28 0.00 38.57 4.08
2363 3348 5.761234 ACCAACTTATAAGTCGAAAAGTGCA 59.239 36.000 18.28 0.00 38.57 4.57
2364 3349 6.073440 TCACCAACTTATAAGTCGAAAAGTGC 60.073 38.462 18.28 0.00 38.57 4.40
2365 3350 7.170998 AGTCACCAACTTATAAGTCGAAAAGTG 59.829 37.037 18.28 16.78 38.57 3.16
2366 3351 7.215085 AGTCACCAACTTATAAGTCGAAAAGT 58.785 34.615 18.28 7.29 38.57 2.66
2367 3352 7.653767 AGTCACCAACTTATAAGTCGAAAAG 57.346 36.000 18.28 7.33 38.57 2.27
2380 3365 7.547722 GTTTGGTTTCAAATAAGTCACCAACTT 59.452 33.333 1.03 0.00 42.59 2.66
2381 3366 6.783708 TTGGTTTCAAATAAGTCACCAACT 57.216 33.333 0.00 0.00 38.97 3.16
2382 3367 6.814146 TGTTTGGTTTCAAATAAGTCACCAAC 59.186 34.615 1.03 0.00 42.59 3.77
2383 3368 6.936279 TGTTTGGTTTCAAATAAGTCACCAA 58.064 32.000 0.00 0.00 43.73 3.67
2384 3369 6.406400 CCTGTTTGGTTTCAAATAAGTCACCA 60.406 38.462 0.00 0.00 43.73 4.17
2385 3370 5.983118 CCTGTTTGGTTTCAAATAAGTCACC 59.017 40.000 0.00 0.00 43.73 4.02
2386 3371 5.983118 CCCTGTTTGGTTTCAAATAAGTCAC 59.017 40.000 0.00 0.00 43.73 3.67
2387 3372 5.452636 GCCCTGTTTGGTTTCAAATAAGTCA 60.453 40.000 0.00 0.00 43.73 3.41
2388 3373 4.988540 GCCCTGTTTGGTTTCAAATAAGTC 59.011 41.667 0.00 0.00 43.73 3.01
2389 3374 4.202315 GGCCCTGTTTGGTTTCAAATAAGT 60.202 41.667 0.00 0.00 43.73 2.24
2390 3375 4.040339 AGGCCCTGTTTGGTTTCAAATAAG 59.960 41.667 0.00 0.00 43.73 1.73
2391 3376 3.970640 AGGCCCTGTTTGGTTTCAAATAA 59.029 39.130 0.00 0.00 43.73 1.40
2392 3377 3.582164 AGGCCCTGTTTGGTTTCAAATA 58.418 40.909 0.00 0.00 43.73 1.40
2393 3378 2.407562 AGGCCCTGTTTGGTTTCAAAT 58.592 42.857 0.00 0.00 43.73 2.32
2394 3379 1.872773 AGGCCCTGTTTGGTTTCAAA 58.127 45.000 0.00 0.00 40.23 2.69
2395 3380 1.872773 AAGGCCCTGTTTGGTTTCAA 58.127 45.000 0.00 0.00 0.00 2.69
2396 3381 2.696187 GTTAAGGCCCTGTTTGGTTTCA 59.304 45.455 0.00 0.00 0.00 2.69
2397 3382 2.036733 GGTTAAGGCCCTGTTTGGTTTC 59.963 50.000 0.00 0.00 0.00 2.78
2398 3383 2.043992 GGTTAAGGCCCTGTTTGGTTT 58.956 47.619 0.00 0.00 0.00 3.27
2399 3384 1.219469 AGGTTAAGGCCCTGTTTGGTT 59.781 47.619 0.00 0.00 0.00 3.67
2400 3385 0.857675 AGGTTAAGGCCCTGTTTGGT 59.142 50.000 0.00 0.00 0.00 3.67
2401 3386 2.009681 AAGGTTAAGGCCCTGTTTGG 57.990 50.000 0.00 0.00 30.99 3.28
2402 3387 3.492337 TGTAAGGTTAAGGCCCTGTTTG 58.508 45.455 0.00 0.00 30.99 2.93
2403 3388 3.887916 TGTAAGGTTAAGGCCCTGTTT 57.112 42.857 0.00 0.00 30.99 2.83
2404 3389 3.887916 TTGTAAGGTTAAGGCCCTGTT 57.112 42.857 0.00 0.00 30.99 3.16
2405 3390 3.117436 TGTTTGTAAGGTTAAGGCCCTGT 60.117 43.478 0.00 0.00 30.99 4.00
2406 3391 3.492337 TGTTTGTAAGGTTAAGGCCCTG 58.508 45.455 0.00 0.00 30.99 4.45
2407 3392 3.887916 TGTTTGTAAGGTTAAGGCCCT 57.112 42.857 0.00 0.00 0.00 5.19
2408 3393 3.368013 GCATGTTTGTAAGGTTAAGGCCC 60.368 47.826 0.00 0.00 0.00 5.80
2409 3394 3.368013 GGCATGTTTGTAAGGTTAAGGCC 60.368 47.826 0.00 0.00 0.00 5.19
2410 3395 3.257127 TGGCATGTTTGTAAGGTTAAGGC 59.743 43.478 0.00 0.00 0.00 4.35
2411 3396 4.614993 CGTGGCATGTTTGTAAGGTTAAGG 60.615 45.833 0.00 0.00 0.00 2.69
2412 3397 4.472286 CGTGGCATGTTTGTAAGGTTAAG 58.528 43.478 0.00 0.00 0.00 1.85
2413 3398 3.304794 GCGTGGCATGTTTGTAAGGTTAA 60.305 43.478 8.75 0.00 0.00 2.01
2414 3399 2.226912 GCGTGGCATGTTTGTAAGGTTA 59.773 45.455 8.75 0.00 0.00 2.85
2415 3400 1.000717 GCGTGGCATGTTTGTAAGGTT 60.001 47.619 8.75 0.00 0.00 3.50
2416 3401 0.596082 GCGTGGCATGTTTGTAAGGT 59.404 50.000 8.75 0.00 0.00 3.50
2417 3402 0.595588 TGCGTGGCATGTTTGTAAGG 59.404 50.000 8.75 0.00 31.71 2.69
2418 3403 1.685302 GTGCGTGGCATGTTTGTAAG 58.315 50.000 8.75 0.00 41.91 2.34
2419 3404 0.040870 CGTGCGTGGCATGTTTGTAA 60.041 50.000 8.75 0.00 41.91 2.41
2420 3405 1.571953 CGTGCGTGGCATGTTTGTA 59.428 52.632 8.75 0.00 41.91 2.41
2421 3406 2.331098 CGTGCGTGGCATGTTTGT 59.669 55.556 8.75 0.00 41.91 2.83
2422 3407 3.098958 GCGTGCGTGGCATGTTTG 61.099 61.111 8.75 0.00 46.10 2.93
2423 3408 2.844451 AAGCGTGCGTGGCATGTTT 61.844 52.632 8.75 8.60 46.10 2.83
2424 3409 3.254014 GAAGCGTGCGTGGCATGTT 62.254 57.895 8.75 2.68 46.10 2.71
2425 3410 3.726517 GAAGCGTGCGTGGCATGT 61.727 61.111 8.75 0.00 46.10 3.21
2426 3411 4.465512 GGAAGCGTGCGTGGCATG 62.466 66.667 1.31 1.31 46.98 4.06



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.