>input_sequence_79914
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-----------------------------------------------------------------------------ATG
GCCACCGACCAGGCGA-CGAAT-----AATGAAATGGTGCCCAAAGAATTGAAAGGA---GGTGCAACGACGGAGCAGGT
AGGGCCGCACCATGGCAACCGGCGAGGTCGTACTTGTGCTGCCCTCCTGCCTTTACTCGGTGCTCCTTTGCCCTTTGGCC
TATGCCCCGTCGGC--------CGATGACCATGACCTTGTCCTAGTAGGACTACAATACCCTGGACGACGACGACCACCA
CGACTTCCTTAGTCCTGAAGCAATGACGACGG---CGATGGCGAGAGGCAAGGGCTCGACTTCCAAGGGCGGTTCGAGTG
CCTCGCTAGCCAGGCGATCCGATCCGATCCGGCCCGGCGTTGTTGGATGC------------------------------
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----------------------------------------------------------------AGGCACTCGAGTCCTG
GCGTGGTCCTCCTCAAATGCAGCGGCAGCGCGGCCGAAGACGAGGAGAGGTCTGAC--------CGACCGACAGTGTTGC
ATGGCGACTGA---------------------------------------------------------------------
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>chr2A_1_TraesCS2A01G391800
TTGCCATCGACCTGTTCAACCTTGCCGACTCTGGATCTCATCTATGCCCATCTCGCCTCGCCTCGCCTCGGACAAATTTT
GACACATAAGACCCCTCGTCAGCCGGCCAATTCAAAGAAGAGCAGCGCTCAACCTCTAGTGCTCCGGATTCA-TACTTGG
CAGAACTGAGCGATCACATTTTCATTCCGATAGGAAGAGCAACTGAGCAAACACGTGGTTACATG---------------
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----CGATGCGTGAATGATAAA-CAGACAGAGCTCTTTTTCTTTTCTATTCTAAGAACATGGTGGCAAGCTGGAAAAAAC
TACCGAAAAGAAGGGAAAAGTCATGCTCCGAGAAAGTCGGCGTTCCGCGCCGTGGGGCCCAGGGCCGGTGGGGGGGCCTG
CCAC------GAGACGTGAGATGTTGCTGATTAGACTTCCAACTGCCCCTAGTTTATGTGTCACTCGGCATCATGTCTGC
AGACTGCAGCTATGGGTTTGGCTCCGGTTCTTTCATTTTCGACGTATATTTGGTTCCGTCTCGTCGCTGTCTTTGGACGT
ACGGCGACGTCGCGGTCGACCCGGGCGGA-GGTGGGAAGCGTGGGGGTTCGTATTGTGC---ACTACTGCTCCACTTGCG
TTGTGCGCACCTCTTCTCGACCTAAACTCGAGCAGCAGTACTAGTACCCGGTAGTACCTAACACAAGTGGAGTTACCGTA
TATGCCATGCACCAACGCCACAAAGCAAGCAGCTCGTATAAAAAAA--GGCCGAGACGGGTCAGTCGATGGCCTTTTGCA
GCCACCGGTGGTGGTTCGGGCTCGGACATCACTCTCATCACCGCCCTCT---TCCCTTCTCTGTG-CGTGCGTGTGGATG
TGGGTGGCATCACACACAGTGTCCTCATAGGTTCGGTTGGCTCGCCCCGGACGGCAGCGACTGGAGCCGCTGGATTACTC
TACTCTCTAGCCTCTAGGATTGGATTAGATCAGATCGAGGGGAATAATACTGCAGACAGTTAGGCTTGGATAAACAAATG
GCCACCGACCAGGCGA-CGAAT-----AATGAAATGGTGCCCAAAGAATTGAAAGGA---GGTGCAACGACGGAGCAGGT
AGGGCCGCACCATGGCAACCGGCGAGGTCGTACTTGTGCTGCCCTCCTGCCTTTACTCGGTGCTCCTTTGCCCTTTGGCC
TATGCCCCGTCGGC--------CGATGACCATGACCTTGTCCTAGTAGGACTACAATACCCTGGACGACGACGACCACCA
CGACTTCCTTAGTCCTGAAGCAATGACGACGG---CGATGGCGAGAGGCAAGGGCTCGACTTCCAAGGGCGGTTCGAGTG
CCTCGCTAGCCAGGCGATCCGATCCGATCCGGCCCGGCGTTGTTGGATGC------------------------------
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----------------------------------------------------------------AGGCACTCGAGTCCTG
GCGTGGTCCTCCTCAAATGCAGCGGCAGCGCGGCCGAAGACGAGGAGAGGTCTGAC--------CGACCGACAGTGTTGC
ATGGCGACTGACCCGTCAGTGGAC------ATGCAGGCGTGCGAGCCAGGGGCAGGTGTAGCCGC----GGAAGGAGGAG
ACACGAAGCAAAGCGATCCT-CCGACCTGGACGTGGTGTCAGGATCGAGATCTACCGAGATCGCGCCTACAGACAGACAG
ACAGACGCTGCCCCTTGCCAGAGCACGGGCAGGCGCGC-------GGCAGCGTGCGACGCTCGCTCCATCGGGAACTGGC
GAGCAGCAGCGTATGAGGGTGAA---CCAACGGCGGACCACCCCGGCGGCCCTGCCGAGCGTGCGCGGGCGGGGCGCTGG
CCTGGTTTGGTGCCGCCCGGCCGGTCCAGCCCGAGCCCGTGTCAACTGTCAACTCCCGACTCGCGAGCGTGGACTTGTCC
GCGAGCAATCCGCGGTTCGGCCGCACACGATTGGCGGCACATGGGGACTTTAGGCAGCGGACGTGTCATCGACTAGGAGA
CACACAGCACCCGCACTGATGCACCGCAGATAAAATACCTTTCCTCCCTAAAGACACCGTCACGTCGTCCCCCGTTCCTT
CATTTGTCTACAGGAGAACCAGATAAGGACAGCGATGCCACAGAGGCACATGCCAAAGCTCGTTGTACACACATAGATGG
AT----CCTCGATTTTTCTGGCTCCGGACTGCGACGTTTTAATAGTATTTAGGGTCTATTTAATTTCAGTAAGTCACCTG
ACTTATAAGTCAGGTGACTTAAAATCAGTAACTTATAAGTCACGCCGGTTTAATTACCACCAATAAGTCATCTGACCACA
CCTTTCTACCTTGTTTTTTTATGTAAAGGTGGTGGGACCCATGCAAAAGGGGTGACTTATAAGTTTTAAGTTGGAGTGGA
GCAACTTATGACTTATAAGTTAGGGTGACTTATAAGTTGGATCCGTTTGACAAAATAAGTCACTTTTTGCACTTTTCGAC
TTATAAGTTGGTGACTTATTTGAAACCAAACAGGGCCTTAACCTTACAAACATGCCACGCACGCTTCCGCATCCTC
>chr2B_1
TTGCCATCGACCTGTTCAACCTTGCCGACTCTGGATCTCATCTATGCCCATCTCGCCACG----------GACAAATTAT
GACACATAGGACCCCTCGTCAGCCGGCCAATTCAAAGAAGAGCAGCGCTCAACCTCTTGTGATCCGGATTCATTACTTCG
CAGAACTGAGCAATCACATTTTAATACCGATAGGAAGAGCAACTGGGCAAACACATGGTTACATGTAAACCTGGGAATGG
TTATTCAAAAACCGGATGAAATGGTTCGGTTTTTACTTTGGATTTGATTAGTTCAAGTTTTATTGGGCCGAGCCTTTTTT
AGTTTGGTTTTGGTTTGGGTATGTGGAGAAACTAGTTTGGGTATAGTTGGTTATGGGTTTAAATAGTTTGGTTATGAGCG
GCTATAAACTATGGGTTTAAACCAGTTTCTGGGCATTGGTTATGTGCAATAACAAAAGACGCACCAACAATGAGTAGTTT
TGATCCGCGTGCACGCTGCAATGCACTTTGTAATTCTGTGTTTTGGGAAAACACCACATGCAAATCAGACATGTCTGCTT
GTGCTTTGGCTAAGGAATTGGGTTTAATACACTTATTAGTGAGCTTTTCGGTCGTGGCCATTGCCTTTTGCCTCTTGCTG
TCTGCCGACTGTATCTCAAGGATAACTTTGTTCCCAAACTGTTGTAGATGCACTTATGTCTGTTCTATCTCATTTACTTC
TTAACATGTCAATTTGTGTAATCAGATGTACATTGAGTCAAACCCATAGTTATGTATTGGGTTTAAATCCATGGTTATGT
ATTGGGTTTAAATTGGTTTGGGTGGAAAAAATAATGGTTTTAGTTTTGGTTGGGCTGAAAATGATATTAAACGGTTATGG
TTCAAGTATGGTTTTGAGAATATGTATACGGGTATGGTTCAAATATGGTTTAAGTATGAAACCATTCTCAGATTTACTTA
CATGCGATGCGTGAATGATAAAACAGACAGAGCTC-------TTTCTTTTCTAAGAACATGGTGGAGAGCTTGAAAAAAT
ACT-GAAAATAAGGGAAAAGTCCTGCTCCGAGAAAGTCGGCGGCCCGCGCCGTGGGGCCCAGGGCCGGTGGGGGGCCTGC
CACGAGATGTGAGATGTGAGATGTTGCTGATTAGACTTCCAACCTCCCCTAGTTTATGTGTCACTCGGCATCATGTCCGC
AG-------CTGTGGGTTTGGCTCCGTTTCTTTCATTTTCGACGTATATTTGGTTCCGTTTCATCGCTGTCTGCGGACGT
ACGACGTCGT---GGTCGATCCGGGCGGA-GGTGGGAAGCGTGGGGGTTCGTATTGTG------TACTCCTCCACTTGCG
TTGTGCGCACCTCTTCTCGACCTAAACTCGAGCAGCAGTACTACCCGGTACTAGTACCTAACACAAGTGGAGTTACCGTA
TATGCCATACACCTACGCCACAAAGCAAGCAACTCGTATAAAAAAAAAGGCCGAGATGGATCAGTAGATGGCCTTTTACA
GCCACCGGTGGTGGTTCGGGCTCGAACATCACTCTCATCACCGCCCTCTCTCTCTCTTCTCTGTGCCGTGCGTGTGGATG
TGGGTGGCATCACACACAGTGTCCTCATAGGTTCGGTTGGCTCGCCCCGGACGGCAGCAACTGGAGCCGCTGAATTACTC
TACTCT--AGCCTCTAGGATTGGATTAGATCAGATCGAGGGGAACAATAATACAGACAGTTAGGCTTGGCTAAACAAATG
GCCACCGACCAGGCGCCCGAATAATGAAATAAAATGGTGCCCAGAGAATTGAATGAAAGGGATGCAACGACGGAGCAGGT
AGGGCCGCACCAGGGCAACCGGCGAGGTCGTACCTGCGCTGATC----GCCTTTACTCGGTGCTTCTTTGCC-------C
TATGCCCCGTCGGCCGATGAGGCGATGACCATGACCTTGTCCTAGTA------CAATACCCTGGACA---ACGACGACCA
TGACTTCCTTAGTCCTGAAGCAATGACGACGACGACGATGGCGAGAGGCAAGGGCTCGATTTCCAAGGGCGATTTGAGTG
CATCGCTAGCCAGCCGATCCGACCCGATCCGGCCCGGCGTTGTTAAATGCACGGC-------------------------
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-------------------------------------------------------------CGTAGGCACTCGAGTCCTG
GCGTGGTCCGCCTCAAATGCAGCGGCAGCGCGGCCGAAGACGAGGAGAGGTCTGACTGAC----CGACCGACAGGGTTGC
ATGGTGACTGACCCGTCAGTGGACATGCAGATGCAGGCGTGCGTGCCAGGGGCAGGTGCAGCCGCGGAAGGAAGGAGGAG
ACACGAAGCAAAGCGATCCTTCCGACCTGGACGTGGTGTCAGGATCAGGATCTACCGAGATCGTGCCT----ACAGACAG
GCAGACGCTGCCCCTTGCCAGAGCACGGGCAGGCGCGCCACGCGCGGCAGCGTGCGACGCTCGCTCCCTCGGGAACAGGC
GAGCAGCAGCGGCGACGGTGAACCAGCCAGCGGCGGACCATCCCGGCCCTGCTGCCGCGGCAGCGTG-------------
-------------CGCCCGGCCGGTCCAGCCCGAGCCCGTGCCAAAGTGCCA------ACTCGCGAGCGTGGGGTTGTCC
GCGAGCAATCCGTGGTTTGGCCGCACACGATTGGCGGCACATGGAGACTTTAGGCAGCGGACGTGTCATCGACTAGGAGA
CACACAGCACCCGCACTGATGCACCGCGGATAAAATACCTTCCCTCCCTAAAGACACCGTCACGTCGTCACCTGTTCCTT
TATCTGTCTACTGGAGAACCAGATAAGGACAGCGATGCCACAGAGGCACAGGCCAAAACTCGTTGTACACACATAGATAG
ATGGATCCTCGATTTTTCTGGCTCCGGACTGCGACGTTCTAATAGTATT-------------------------------
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----------------------------------------------------------------------------
>chr2D_1
TTGCCATCGACCCGTTCAACCTTGCCGACTCTGGATCTCATCTATGCCCATCTCGCCTCGCCTCGGACAA---AAATTAT
GACACATAGGACCCCTCGTCAGCCGGCCAATTCAAAGAAGAGCAACGCTCAACCTCTAGTGATCCGGATTCATTGCTTGG
CAGAACTGAGCAATCACATTCTAATTCCGATAGGAAGAGCAACTGAGCAAACACATGGTTACATG---------------
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----CGATGCGTGAACGATAAAACAGACAGAGGTC-------TTTCTTTTCTAAGAACATGGTGGCGAGCTGAAAAAACT
ACT-GAAAATAAGGGAAAAGTCCTGCTCCCAGAAAGTCGGCGGGCCGCGCCGTGGGGCCCAGGGCCGGTGGGGGGGCCTG
CCAC------GAGATGTGAGATGTTGCTGATTAGACTTCCAGCCTCCCCTAGTTTATGTGTCACTCAGCATCATGTCTGC
AG-------CTATGGGTTTGGCTCCGTTTCTTTCATTTTCGACGCATATTTGGTTCCGTTTCATCGCTGTCTTTGGACGT
ACGACGTCGC---GGTCGATCCGGGCGGAAGGTGGGAGGCGTGGGGGTTCGTATTGTGGAGTACTACTACTCCACTTGCG
TTGTGCGCACCTCTTCTCGACCTAAACTCGAGCAGCAGTACT------------TACCTAACACAAGTGGAGTTACCGTA
TATGCCATACACCTACGCCACAAAGCAAGCAGCTCGTATAAAAAAA--GGCCGAGACGGGTCAGTAGATGGGCTTTTGCA
GCCACCGGTGGTGGTTCGGGCTCGGACATCACTCTCACCACCGCCCTCTC--TCCCTTCTCTGTGCCGTGCGTGTAGATG
TGGGTGGCATCACGCACAGTGTCCTCATAGGTTCGGTTGGCTCGCCCCGGACGGCAGCGACTGGAGCCGCTGAATTACTC
TACTCT--AGCCTCTAGGATTGGATTAGATCAGATCGACGGGAATAATACTGCAGACAGTTTGGCTTGGCTAAACAAATG
GCCACCGACCAGGCGCCCGAAT-----AATGAAATGGTGCCCAAAGAATTGAATGAAGGGGGTGCAACGACGGAGCAGGT
AGGGCCGCACCATGGCAACTGGCGAGGTCGTACTTGTGCTGCC----TGCCTTTACTCGGTGCTTCTTTGCC-------C
TATGCCCCGTCGGC--------CGATGACCATGACCTTGTCCTAGTA------CAATACCCTGGACGACGACGACGACCA
CGACTTCCTTAGTCCTGAAGCAATGACGACGG---CGATGGCGAGAGGCAAGGGCTTGACTCCCAAGGGCGATTCGAGTG
CCTCGCTAGCCAGGCGATCCGATCCGATCCGGCCCGGCGTTGTTAAATGCAGTGGCGGAGCTAGGATCAAGCCACGACCC
GGGCAAGCCCCAGGCCAATCACTTGGTACAGTATTAAACAGTGTAAAATCTGCTACAGTAAACAAAGGAGCCAAGCCTCA
CGACCCAGGCCGCCGCCCGGGCAGCCTGGGGCTTGTCTCCGCCACTGGTTAAATGCACGGTCGTAGGCACTCGAGTCCTG
GCGTGGTCCGCCTCAGATGCAGCGGCAGCGCGGCCGAAGACGAGGAGAGGTCTGACTGACTGACCGACCGACAGGGTTGC
ATGGCGACTGACCCGTCAGTGGAC------ATGCAGGCGTGCGCGCCAGGGGCGGGTGCAGCCGCGGAAGGAAGGAGGAG
ACACGAAGCAAAGCGATCCTTCCGACCTGGACGTGGTGTCAGGATCAAGATCTACCGAGATCGCGCCTACAGACAGACAG
ACAGACGCTGCCCCTTGCCAGAGCACGGGCAAGCGC-----------------GCGGCGCTCGCTCCCTCGGGAACCGGC
GAGCAGCAGCGGGCGAAGGTGAA---CCAGCGGCGGACCACCCCGGCCCTGGA----------------------GCTGG
CCTTTCTTCGTGCCGCCCGGCCGGTCCAGCCCGAGCCCGTGTCAAGTGTCAACTCGCGAGTCGCGAGCGTGGAGTTGTCC
GCGAGCAATCCGCGGTTTGGCCGCACACGATTGGCGGCACATGGAGACTTTAGGCAGCGGACGTGTCATCGACTAGGAGA
CACACAGCACCCGCACTGATGCACCGCAGATGGAGTACCTTTCCTCCCTAAAGACACCGTCACGTCGTCCCCTGTTCCTT
TATTTGTCTACTGGCGAACCAGATAAGGACAGCGATGCCACAGAGGCACAGGCCAAAGCTCGTTGTAGACACAT----AG
ATGGATCCTCGATTTTTCTGGCTCCGGACTGCGACGTTATAGTACTATT-------------------------------
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>SNPs
-----------------------------------------------------------------SSSSS--------S-
--------S----------------------------------------------------S------------------
-----------S----------S-------------------------------S-------------------------
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-----------------------------------SSSSSSS-----S------------------S------------S
SSSS-----S------------S-------------------SS------------------------------------
--------------S----------------------------SS-----------------------------------
--SSSSSSS-----------------S--------------------------------S--S-----------------
---S--S---SSS------S--------------------------------------S---------S-----------
-------------------------------------------SSSSSSSS-----------------------------
--------S----S---------------------------------------------------S--------------
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------------------------------------------------------------------------S-------
------SS-------------------------------------------------------------S----------
---------------S-------------------------------------S-S------------------------
--------------------------------------------SSS-----------------S-------SSSSSSS-
-----------------------------------------------SSSSSS----------------------S----
-----------------------------------------------------------------------S--------
--------------------------------------------SS----------------------------------
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---------S----------------------------------------------------------------S-----
-------------------------------------------S--------------S---------------------
----------------------------------------------S---------------------------------
-------------------------------------------------------------------S--------S---
-----------SSS---------------S-----------------SSSS------S-SSS---S-SSSSSSSS-----
---SSS--S------------------------------------S---------S-----------------S------
-----------------S--------------------------S-----------------------------------
------------------------------------------------------------------------S-------
S----------S--------------------------------------S---------------------------S-
--------------------------------------S----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1203
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---------------------------------------------------------------CTCGGCATCATGTCTGC
AGA-----------------------------------------------------------------------------
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>reverse_2652
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-----------TATGAGGGTGAACCAACGGC-------------------------------------------------
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