Multiple sequence alignment - TraesCS2A01G386400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G386400 chr2A 100.000 2755 0 0 1 2755 632505862 632508616 0.000000e+00 5088.0
1 TraesCS2A01G386400 chr2D 88.173 1877 89 53 699 2515 487492950 487494753 0.000000e+00 2113.0
2 TraesCS2A01G386400 chr2D 94.570 221 8 2 2539 2755 487494818 487495038 3.400000e-89 339.0
3 TraesCS2A01G386400 chr2D 100.000 29 0 0 416 444 317880174 317880146 1.000000e-03 54.7
4 TraesCS2A01G386400 chr2B 87.517 1458 78 39 703 2113 572155885 572157285 0.000000e+00 1589.0
5 TraesCS2A01G386400 chr2B 95.633 229 9 1 2527 2755 572157909 572158136 1.560000e-97 366.0
6 TraesCS2A01G386400 chr2B 94.444 234 10 3 2122 2353 572157495 572157727 9.380000e-95 357.0
7 TraesCS2A01G386400 chr2B 81.746 126 20 3 100 225 572180744 572180866 4.850000e-18 102.0
8 TraesCS2A01G386400 chr2B 100.000 31 0 0 417 447 17882997 17882967 1.070000e-04 58.4
9 TraesCS2A01G386400 chr7B 89.773 176 16 2 247 421 705310773 705310599 9.930000e-55 224.0
10 TraesCS2A01G386400 chr7B 90.099 101 8 2 1 100 10955061 10954962 2.230000e-26 130.0
11 TraesCS2A01G386400 chr7B 100.000 31 0 0 417 447 44766203 44766173 1.070000e-04 58.4
12 TraesCS2A01G386400 chr3B 89.714 175 16 2 242 415 673063290 673063463 3.570000e-54 222.0
13 TraesCS2A01G386400 chr3B 89.143 175 17 2 242 415 672963430 672963603 1.660000e-52 217.0
14 TraesCS2A01G386400 chr3B 100.000 30 0 0 417 446 256780736 256780707 3.830000e-04 56.5
15 TraesCS2A01G386400 chr4D 90.000 170 17 0 246 415 93338035 93338204 1.280000e-53 220.0
16 TraesCS2A01G386400 chr4D 89.216 102 11 0 1 102 408572612 408572511 8.010000e-26 128.0
17 TraesCS2A01G386400 chr1D 89.941 169 17 0 247 415 393753279 393753447 4.620000e-53 219.0
18 TraesCS2A01G386400 chr1D 88.043 184 21 1 245 427 178466478 178466295 1.660000e-52 217.0
19 TraesCS2A01G386400 chr1D 88.679 106 11 1 1 105 87667511 87667406 8.010000e-26 128.0
20 TraesCS2A01G386400 chr1D 100.000 31 0 0 417 447 345717289 345717319 1.070000e-04 58.4
21 TraesCS2A01G386400 chr5A 89.535 172 17 1 245 415 290391688 290391859 1.660000e-52 217.0
22 TraesCS2A01G386400 chr5A 89.080 174 18 1 246 418 332291608 332291435 5.980000e-52 215.0
23 TraesCS2A01G386400 chr5A 90.000 100 10 0 1 100 611553912 611553813 2.230000e-26 130.0
24 TraesCS2A01G386400 chr3A 88.764 178 19 1 252 429 733260583 733260759 1.660000e-52 217.0
25 TraesCS2A01G386400 chr3A 100.000 31 0 0 417 447 10878409 10878379 1.070000e-04 58.4
26 TraesCS2A01G386400 chr3A 100.000 30 0 0 417 446 219794825 219794796 3.830000e-04 56.5
27 TraesCS2A01G386400 chr5D 91.089 101 9 0 1 101 198954969 198955069 1.330000e-28 137.0
28 TraesCS2A01G386400 chr5D 85.470 117 15 1 1 117 450851454 450851340 1.340000e-23 121.0
29 TraesCS2A01G386400 chr4A 90.196 102 10 0 1 102 80142873 80142772 1.720000e-27 134.0
30 TraesCS2A01G386400 chr1A 89.423 104 11 0 1 104 84012485 84012382 6.190000e-27 132.0
31 TraesCS2A01G386400 chr3D 89.320 103 11 0 1 103 131485321 131485423 2.230000e-26 130.0
32 TraesCS2A01G386400 chr3D 100.000 31 0 0 417 447 898687 898717 1.070000e-04 58.4
33 TraesCS2A01G386400 chr5B 100.000 31 0 0 417 447 228761170 228761140 1.070000e-04 58.4
34 TraesCS2A01G386400 chr1B 97.059 34 0 1 414 446 641539241 641539208 3.830000e-04 56.5
35 TraesCS2A01G386400 chr6A 96.875 32 1 0 416 447 356112290 356112321 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G386400 chr2A 632505862 632508616 2754 False 5088.000000 5088 100.000000 1 2755 1 chr2A.!!$F1 2754
1 TraesCS2A01G386400 chr2D 487492950 487495038 2088 False 1226.000000 2113 91.371500 699 2755 2 chr2D.!!$F1 2056
2 TraesCS2A01G386400 chr2B 572155885 572158136 2251 False 770.666667 1589 92.531333 703 2755 3 chr2B.!!$F2 2052

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
181 182 0.040246 TGCGTGTGAATGACGACGTA 60.04 50.0 0.0 0.0 39.21 3.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1806 1869 0.753262 ACCGCATCCATCCACTAGTC 59.247 55.0 0.0 0.0 0.0 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 9.827198 ACATTTGTATGTAATCCATAATGGGAT 57.173 29.630 0.00 0.00 43.12 3.85
75 76 9.981460 AATCCATAATGGGATATCTAAAAGGTC 57.019 33.333 2.05 0.00 46.96 3.85
76 77 8.757307 TCCATAATGGGATATCTAAAAGGTCT 57.243 34.615 2.05 0.00 38.32 3.85
77 78 9.182642 TCCATAATGGGATATCTAAAAGGTCTT 57.817 33.333 2.05 0.00 38.32 3.01
93 94 8.959705 AAAAGGTCTTATATTTAGGAACGGAG 57.040 34.615 0.00 0.00 0.00 4.63
94 95 6.667558 AGGTCTTATATTTAGGAACGGAGG 57.332 41.667 0.00 0.00 0.00 4.30
95 96 5.543020 AGGTCTTATATTTAGGAACGGAGGG 59.457 44.000 0.00 0.00 0.00 4.30
96 97 5.541484 GGTCTTATATTTAGGAACGGAGGGA 59.459 44.000 0.00 0.00 0.00 4.20
97 98 6.295180 GGTCTTATATTTAGGAACGGAGGGAG 60.295 46.154 0.00 0.00 0.00 4.30
98 99 6.267242 GTCTTATATTTAGGAACGGAGGGAGT 59.733 42.308 0.00 0.00 0.00 3.85
99 100 7.449704 GTCTTATATTTAGGAACGGAGGGAGTA 59.550 40.741 0.00 0.00 0.00 2.59
100 101 8.175431 TCTTATATTTAGGAACGGAGGGAGTAT 58.825 37.037 0.00 0.00 0.00 2.12
101 102 8.731591 TTATATTTAGGAACGGAGGGAGTATT 57.268 34.615 0.00 0.00 0.00 1.89
102 103 9.827198 TTATATTTAGGAACGGAGGGAGTATTA 57.173 33.333 0.00 0.00 0.00 0.98
103 104 8.731591 ATATTTAGGAACGGAGGGAGTATTAA 57.268 34.615 0.00 0.00 0.00 1.40
104 105 7.628501 ATTTAGGAACGGAGGGAGTATTAAT 57.371 36.000 0.00 0.00 0.00 1.40
105 106 8.731591 ATTTAGGAACGGAGGGAGTATTAATA 57.268 34.615 0.00 0.00 0.00 0.98
106 107 7.771927 TTAGGAACGGAGGGAGTATTAATAG 57.228 40.000 0.00 0.00 0.00 1.73
107 108 5.713807 AGGAACGGAGGGAGTATTAATAGT 58.286 41.667 2.31 2.31 0.00 2.12
108 109 6.141790 AGGAACGGAGGGAGTATTAATAGTT 58.858 40.000 4.31 0.00 0.00 2.24
109 110 6.267242 AGGAACGGAGGGAGTATTAATAGTTC 59.733 42.308 4.31 2.31 35.06 3.01
110 111 5.702349 ACGGAGGGAGTATTAATAGTTCG 57.298 43.478 4.31 6.77 0.00 3.95
111 112 5.380043 ACGGAGGGAGTATTAATAGTTCGA 58.620 41.667 4.31 0.00 0.00 3.71
112 113 6.008960 ACGGAGGGAGTATTAATAGTTCGAT 58.991 40.000 4.31 0.00 0.00 3.59
113 114 6.492772 ACGGAGGGAGTATTAATAGTTCGATT 59.507 38.462 4.31 0.00 0.00 3.34
114 115 7.015001 ACGGAGGGAGTATTAATAGTTCGATTT 59.985 37.037 4.31 0.00 0.00 2.17
115 116 7.328737 CGGAGGGAGTATTAATAGTTCGATTTG 59.671 40.741 4.31 0.00 0.00 2.32
116 117 8.148999 GGAGGGAGTATTAATAGTTCGATTTGT 58.851 37.037 4.31 0.00 0.00 2.83
117 118 8.888579 AGGGAGTATTAATAGTTCGATTTGTG 57.111 34.615 4.31 0.00 0.00 3.33
118 119 8.701895 AGGGAGTATTAATAGTTCGATTTGTGA 58.298 33.333 4.31 0.00 0.00 3.58
119 120 9.321562 GGGAGTATTAATAGTTCGATTTGTGAA 57.678 33.333 4.31 0.00 0.00 3.18
128 129 9.716507 AATAGTTCGATTTGTGAATTAATTCGG 57.283 29.630 20.45 6.43 39.62 4.30
129 130 6.027749 AGTTCGATTTGTGAATTAATTCGGC 58.972 36.000 20.45 16.29 39.62 5.54
130 131 5.811399 TCGATTTGTGAATTAATTCGGCT 57.189 34.783 20.45 6.11 39.62 5.52
131 132 5.806286 TCGATTTGTGAATTAATTCGGCTC 58.194 37.500 20.45 12.40 39.62 4.70
132 133 5.584649 TCGATTTGTGAATTAATTCGGCTCT 59.415 36.000 20.45 7.64 39.62 4.09
133 134 6.093495 TCGATTTGTGAATTAATTCGGCTCTT 59.907 34.615 20.45 6.43 39.62 2.85
134 135 6.195244 CGATTTGTGAATTAATTCGGCTCTTG 59.805 38.462 20.45 7.31 39.62 3.02
135 136 5.957842 TTGTGAATTAATTCGGCTCTTGT 57.042 34.783 20.45 0.00 39.62 3.16
136 137 5.957842 TGTGAATTAATTCGGCTCTTGTT 57.042 34.783 20.45 0.00 39.62 2.83
137 138 6.325919 TGTGAATTAATTCGGCTCTTGTTT 57.674 33.333 20.45 0.00 39.62 2.83
138 139 6.744112 TGTGAATTAATTCGGCTCTTGTTTT 58.256 32.000 20.45 0.00 39.62 2.43
139 140 6.861055 TGTGAATTAATTCGGCTCTTGTTTTC 59.139 34.615 20.45 0.00 39.62 2.29
140 141 6.861055 GTGAATTAATTCGGCTCTTGTTTTCA 59.139 34.615 20.45 0.00 39.62 2.69
141 142 7.381139 GTGAATTAATTCGGCTCTTGTTTTCAA 59.619 33.333 20.45 0.00 39.62 2.69
142 143 7.923344 TGAATTAATTCGGCTCTTGTTTTCAAA 59.077 29.630 20.45 0.00 38.21 2.69
143 144 8.831715 AATTAATTCGGCTCTTGTTTTCAAAT 57.168 26.923 0.00 0.00 39.47 2.32
144 145 8.831715 ATTAATTCGGCTCTTGTTTTCAAATT 57.168 26.923 0.00 0.00 39.47 1.82
145 146 9.921637 ATTAATTCGGCTCTTGTTTTCAAATTA 57.078 25.926 0.00 0.00 39.47 1.40
146 147 9.921637 TTAATTCGGCTCTTGTTTTCAAATTAT 57.078 25.926 0.00 0.00 39.47 1.28
147 148 8.831715 AATTCGGCTCTTGTTTTCAAATTATT 57.168 26.923 0.00 0.00 39.47 1.40
148 149 8.831715 ATTCGGCTCTTGTTTTCAAATTATTT 57.168 26.923 0.00 0.00 39.47 1.40
149 150 8.655651 TTCGGCTCTTGTTTTCAAATTATTTT 57.344 26.923 0.00 0.00 39.47 1.82
150 151 8.293114 TCGGCTCTTGTTTTCAAATTATTTTC 57.707 30.769 0.00 0.00 39.47 2.29
151 152 7.923344 TCGGCTCTTGTTTTCAAATTATTTTCA 59.077 29.630 0.00 0.00 39.47 2.69
152 153 8.003784 CGGCTCTTGTTTTCAAATTATTTTCAC 58.996 33.333 0.00 0.00 39.47 3.18
153 154 8.825745 GGCTCTTGTTTTCAAATTATTTTCACA 58.174 29.630 0.00 0.00 39.47 3.58
166 167 9.801873 AAATTATTTTCACATTAATAGCTGCGT 57.198 25.926 0.00 0.00 0.00 5.24
167 168 8.786937 ATTATTTTCACATTAATAGCTGCGTG 57.213 30.769 0.00 0.00 0.00 5.34
168 169 5.621197 TTTTCACATTAATAGCTGCGTGT 57.379 34.783 0.00 0.00 0.00 4.49
169 170 4.598406 TTCACATTAATAGCTGCGTGTG 57.402 40.909 0.00 4.91 38.55 3.82
170 171 3.855858 TCACATTAATAGCTGCGTGTGA 58.144 40.909 14.22 14.22 42.35 3.58
171 172 4.249661 TCACATTAATAGCTGCGTGTGAA 58.750 39.130 15.24 2.09 41.85 3.18
172 173 4.875536 TCACATTAATAGCTGCGTGTGAAT 59.124 37.500 15.24 3.88 41.85 2.57
173 174 4.965762 CACATTAATAGCTGCGTGTGAATG 59.034 41.667 0.00 12.44 39.30 2.67
174 175 4.875536 ACATTAATAGCTGCGTGTGAATGA 59.124 37.500 17.73 0.00 0.00 2.57
175 176 4.857871 TTAATAGCTGCGTGTGAATGAC 57.142 40.909 0.00 0.00 0.00 3.06
176 177 1.280982 ATAGCTGCGTGTGAATGACG 58.719 50.000 0.00 0.00 39.87 4.35
177 178 0.242555 TAGCTGCGTGTGAATGACGA 59.757 50.000 0.00 0.00 39.21 4.20
178 179 1.130613 GCTGCGTGTGAATGACGAC 59.869 57.895 0.00 0.00 39.21 4.34
179 180 1.412226 CTGCGTGTGAATGACGACG 59.588 57.895 0.00 0.00 39.21 5.12
180 181 1.275471 CTGCGTGTGAATGACGACGT 61.275 55.000 0.00 0.00 39.21 4.34
181 182 0.040246 TGCGTGTGAATGACGACGTA 60.040 50.000 0.00 0.00 39.21 3.57
182 183 0.361184 GCGTGTGAATGACGACGTAC 59.639 55.000 0.00 0.00 39.21 3.67
183 184 1.959747 CGTGTGAATGACGACGTACT 58.040 50.000 0.00 0.00 39.21 2.73
184 185 2.725759 GCGTGTGAATGACGACGTACTA 60.726 50.000 0.00 0.00 39.21 1.82
185 186 2.836733 CGTGTGAATGACGACGTACTAC 59.163 50.000 0.00 0.00 39.21 2.73
186 187 3.665060 CGTGTGAATGACGACGTACTACA 60.665 47.826 0.00 0.00 39.21 2.74
187 188 3.601211 GTGTGAATGACGACGTACTACAC 59.399 47.826 0.00 10.24 0.00 2.90
188 189 3.250521 TGTGAATGACGACGTACTACACA 59.749 43.478 19.05 19.05 34.24 3.72
189 190 4.083164 TGTGAATGACGACGTACTACACAT 60.083 41.667 19.05 8.50 32.23 3.21
190 191 5.122082 TGTGAATGACGACGTACTACACATA 59.878 40.000 19.05 5.90 32.23 2.29
191 192 6.183360 TGTGAATGACGACGTACTACACATAT 60.183 38.462 19.05 4.16 32.23 1.78
192 193 6.356452 GTGAATGACGACGTACTACACATATC 59.644 42.308 0.00 1.45 0.00 1.63
193 194 5.996669 ATGACGACGTACTACACATATCA 57.003 39.130 0.00 0.00 0.00 2.15
194 195 5.996669 TGACGACGTACTACACATATCAT 57.003 39.130 0.00 0.00 0.00 2.45
195 196 7.662604 ATGACGACGTACTACACATATCATA 57.337 36.000 0.00 0.00 0.00 2.15
196 197 7.113704 TGACGACGTACTACACATATCATAG 57.886 40.000 0.00 0.00 0.00 2.23
197 198 6.925165 TGACGACGTACTACACATATCATAGA 59.075 38.462 0.00 0.00 0.00 1.98
198 199 7.115947 TGACGACGTACTACACATATCATAGAG 59.884 40.741 0.00 0.00 0.00 2.43
199 200 7.150640 ACGACGTACTACACATATCATAGAGA 58.849 38.462 0.00 0.00 0.00 3.10
200 201 7.818446 ACGACGTACTACACATATCATAGAGAT 59.182 37.037 0.00 0.00 40.86 2.75
201 202 9.298774 CGACGTACTACACATATCATAGAGATA 57.701 37.037 0.00 0.00 43.11 1.98
203 204 9.602568 ACGTACTACACATATCATAGAGATAGG 57.397 37.037 0.00 0.00 44.46 2.57
221 222 9.989296 AGAGATAGGTAAGATGTTATAGATGCT 57.011 33.333 0.00 0.00 0.00 3.79
223 224 9.989296 AGATAGGTAAGATGTTATAGATGCTCT 57.011 33.333 0.00 0.00 0.00 4.09
227 228 9.019656 AGGTAAGATGTTATAGATGCTCTAGTG 57.980 37.037 0.00 0.00 31.67 2.74
228 229 8.247562 GGTAAGATGTTATAGATGCTCTAGTGG 58.752 40.741 0.00 0.00 31.67 4.00
229 230 6.849085 AGATGTTATAGATGCTCTAGTGGG 57.151 41.667 0.00 0.00 31.67 4.61
230 231 4.873746 TGTTATAGATGCTCTAGTGGGC 57.126 45.455 0.00 0.00 31.67 5.36
231 232 4.483950 TGTTATAGATGCTCTAGTGGGCT 58.516 43.478 0.00 0.00 31.67 5.19
232 233 5.641155 TGTTATAGATGCTCTAGTGGGCTA 58.359 41.667 0.00 0.00 31.67 3.93
233 234 5.477291 TGTTATAGATGCTCTAGTGGGCTAC 59.523 44.000 0.00 0.00 31.67 3.58
234 235 2.765689 AGATGCTCTAGTGGGCTACT 57.234 50.000 9.01 9.01 43.56 2.57
235 236 2.593026 AGATGCTCTAGTGGGCTACTC 58.407 52.381 6.84 0.00 40.89 2.59
236 237 2.176798 AGATGCTCTAGTGGGCTACTCT 59.823 50.000 6.84 0.00 40.89 3.24
237 238 2.534042 TGCTCTAGTGGGCTACTCTT 57.466 50.000 6.84 0.00 40.89 2.85
238 239 2.379972 TGCTCTAGTGGGCTACTCTTC 58.620 52.381 6.84 0.00 40.89 2.87
239 240 1.335496 GCTCTAGTGGGCTACTCTTCG 59.665 57.143 6.84 0.00 40.89 3.79
240 241 2.645802 CTCTAGTGGGCTACTCTTCGT 58.354 52.381 6.84 0.00 40.89 3.85
241 242 2.614983 CTCTAGTGGGCTACTCTTCGTC 59.385 54.545 6.84 0.00 40.89 4.20
242 243 1.677052 CTAGTGGGCTACTCTTCGTCC 59.323 57.143 6.84 0.00 40.89 4.79
243 244 0.971447 AGTGGGCTACTCTTCGTCCC 60.971 60.000 0.00 0.00 33.17 4.46
244 245 1.077805 TGGGCTACTCTTCGTCCCA 59.922 57.895 0.00 0.00 44.16 4.37
245 246 0.325296 TGGGCTACTCTTCGTCCCAT 60.325 55.000 0.00 0.00 41.71 4.00
246 247 1.063492 TGGGCTACTCTTCGTCCCATA 60.063 52.381 0.00 0.00 41.71 2.74
247 248 2.037144 GGGCTACTCTTCGTCCCATAA 58.963 52.381 0.00 0.00 36.96 1.90
248 249 2.633481 GGGCTACTCTTCGTCCCATAAT 59.367 50.000 0.00 0.00 36.96 1.28
249 250 3.830755 GGGCTACTCTTCGTCCCATAATA 59.169 47.826 0.00 0.00 36.96 0.98
250 251 4.466726 GGGCTACTCTTCGTCCCATAATAT 59.533 45.833 0.00 0.00 36.96 1.28
251 252 5.655532 GGGCTACTCTTCGTCCCATAATATA 59.344 44.000 0.00 0.00 36.96 0.86
252 253 6.324254 GGGCTACTCTTCGTCCCATAATATAT 59.676 42.308 0.00 0.00 36.96 0.86
253 254 7.504911 GGGCTACTCTTCGTCCCATAATATATA 59.495 40.741 0.00 0.00 36.96 0.86
254 255 8.351461 GGCTACTCTTCGTCCCATAATATATAC 58.649 40.741 0.00 0.00 0.00 1.47
255 256 9.122779 GCTACTCTTCGTCCCATAATATATACT 57.877 37.037 0.00 0.00 0.00 2.12
257 258 8.522542 ACTCTTCGTCCCATAATATATACTCC 57.477 38.462 0.00 0.00 0.00 3.85
258 259 7.560626 ACTCTTCGTCCCATAATATATACTCCC 59.439 40.741 0.00 0.00 0.00 4.30
259 260 7.649715 TCTTCGTCCCATAATATATACTCCCT 58.350 38.462 0.00 0.00 0.00 4.20
260 261 7.778853 TCTTCGTCCCATAATATATACTCCCTC 59.221 40.741 0.00 0.00 0.00 4.30
261 262 6.371278 TCGTCCCATAATATATACTCCCTCC 58.629 44.000 0.00 0.00 0.00 4.30
262 263 5.241064 CGTCCCATAATATATACTCCCTCCG 59.759 48.000 0.00 0.00 0.00 4.63
263 264 6.134754 GTCCCATAATATATACTCCCTCCGT 58.865 44.000 0.00 0.00 0.00 4.69
264 265 6.610425 GTCCCATAATATATACTCCCTCCGTT 59.390 42.308 0.00 0.00 0.00 4.44
265 266 7.125356 GTCCCATAATATATACTCCCTCCGTTT 59.875 40.741 0.00 0.00 0.00 3.60
266 267 7.343833 TCCCATAATATATACTCCCTCCGTTTC 59.656 40.741 0.00 0.00 0.00 2.78
267 268 7.344871 CCCATAATATATACTCCCTCCGTTTCT 59.655 40.741 0.00 0.00 0.00 2.52
268 269 9.417561 CCATAATATATACTCCCTCCGTTTCTA 57.582 37.037 0.00 0.00 0.00 2.10
276 277 8.904099 ATACTCCCTCCGTTTCTAAATATTTG 57.096 34.615 11.05 1.65 0.00 2.32
277 278 6.718294 ACTCCCTCCGTTTCTAAATATTTGT 58.282 36.000 11.05 0.00 0.00 2.83
278 279 7.173032 ACTCCCTCCGTTTCTAAATATTTGTT 58.827 34.615 11.05 0.00 0.00 2.83
279 280 7.668469 ACTCCCTCCGTTTCTAAATATTTGTTT 59.332 33.333 11.05 0.00 0.00 2.83
280 281 8.411991 TCCCTCCGTTTCTAAATATTTGTTTT 57.588 30.769 11.05 0.00 0.00 2.43
281 282 8.862085 TCCCTCCGTTTCTAAATATTTGTTTTT 58.138 29.630 11.05 0.00 0.00 1.94
282 283 9.135843 CCCTCCGTTTCTAAATATTTGTTTTTC 57.864 33.333 11.05 0.00 0.00 2.29
283 284 9.908152 CCTCCGTTTCTAAATATTTGTTTTTCT 57.092 29.630 11.05 0.00 0.00 2.52
317 318 5.528043 AAAATGACCACATACAAAGCACA 57.472 34.783 0.00 0.00 35.50 4.57
318 319 5.528043 AAATGACCACATACAAAGCACAA 57.472 34.783 0.00 0.00 35.50 3.33
319 320 3.980646 TGACCACATACAAAGCACAAC 57.019 42.857 0.00 0.00 0.00 3.32
320 321 2.289274 TGACCACATACAAAGCACAACG 59.711 45.455 0.00 0.00 0.00 4.10
321 322 2.546368 GACCACATACAAAGCACAACGA 59.454 45.455 0.00 0.00 0.00 3.85
322 323 2.548057 ACCACATACAAAGCACAACGAG 59.452 45.455 0.00 0.00 0.00 4.18
323 324 2.548057 CCACATACAAAGCACAACGAGT 59.452 45.455 0.00 0.00 0.00 4.18
341 342 9.871238 ACAACGAGTGAATGTATACTCTAAAAT 57.129 29.630 4.17 0.00 40.82 1.82
366 367 6.538945 TGTCTGTGTACATATGTATGTGGT 57.461 37.500 18.27 0.00 45.77 4.16
367 368 7.648039 TGTCTGTGTACATATGTATGTGGTA 57.352 36.000 18.27 1.54 45.77 3.25
368 369 7.712797 TGTCTGTGTACATATGTATGTGGTAG 58.287 38.462 18.27 11.01 45.77 3.18
369 370 7.340999 TGTCTGTGTACATATGTATGTGGTAGT 59.659 37.037 18.27 0.00 45.77 2.73
370 371 7.861372 GTCTGTGTACATATGTATGTGGTAGTC 59.139 40.741 18.27 3.51 45.77 2.59
371 372 7.013942 TCTGTGTACATATGTATGTGGTAGTCC 59.986 40.741 18.27 2.84 45.77 3.85
372 373 6.608002 TGTGTACATATGTATGTGGTAGTCCA 59.392 38.462 18.27 5.30 45.77 4.02
373 374 7.289084 TGTGTACATATGTATGTGGTAGTCCAT 59.711 37.037 18.27 0.00 45.77 3.41
374 375 8.148351 GTGTACATATGTATGTGGTAGTCCATT 58.852 37.037 18.27 0.00 45.77 3.16
375 376 8.710239 TGTACATATGTATGTGGTAGTCCATTT 58.290 33.333 18.27 0.00 45.77 2.32
382 383 9.920946 ATGTATGTGGTAGTCCATTTAAAATCT 57.079 29.630 0.00 0.00 46.20 2.40
383 384 9.391006 TGTATGTGGTAGTCCATTTAAAATCTC 57.609 33.333 0.00 0.00 46.20 2.75
384 385 9.614792 GTATGTGGTAGTCCATTTAAAATCTCT 57.385 33.333 0.00 0.00 46.20 3.10
411 412 9.855021 AAAAAGACAAATATTTAGGAACGGATG 57.145 29.630 0.00 0.00 0.00 3.51
412 413 7.568199 AAGACAAATATTTAGGAACGGATGG 57.432 36.000 0.00 0.00 0.00 3.51
413 414 6.895782 AGACAAATATTTAGGAACGGATGGA 58.104 36.000 0.00 0.00 0.00 3.41
414 415 6.992715 AGACAAATATTTAGGAACGGATGGAG 59.007 38.462 0.00 0.00 0.00 3.86
415 416 5.531287 ACAAATATTTAGGAACGGATGGAGC 59.469 40.000 0.00 0.00 0.00 4.70
416 417 4.974645 ATATTTAGGAACGGATGGAGCA 57.025 40.909 0.00 0.00 0.00 4.26
417 418 2.691409 TTTAGGAACGGATGGAGCAG 57.309 50.000 0.00 0.00 0.00 4.24
418 419 0.178068 TTAGGAACGGATGGAGCAGC 59.822 55.000 0.00 0.00 0.00 5.25
419 420 0.687757 TAGGAACGGATGGAGCAGCT 60.688 55.000 0.00 0.00 0.00 4.24
420 421 1.078143 GGAACGGATGGAGCAGCTT 60.078 57.895 0.00 0.00 0.00 3.74
421 422 1.372087 GGAACGGATGGAGCAGCTTG 61.372 60.000 0.00 0.00 0.00 4.01
422 423 1.986575 GAACGGATGGAGCAGCTTGC 61.987 60.000 0.00 0.47 45.46 4.01
432 433 3.256620 GCAGCTTGCAAAAACGTCT 57.743 47.368 0.00 0.00 44.26 4.18
433 434 1.559831 GCAGCTTGCAAAAACGTCTT 58.440 45.000 0.00 0.00 44.26 3.01
434 435 2.726633 GCAGCTTGCAAAAACGTCTTA 58.273 42.857 0.00 0.00 44.26 2.10
435 436 3.308530 GCAGCTTGCAAAAACGTCTTAT 58.691 40.909 0.00 0.00 44.26 1.73
436 437 4.472286 GCAGCTTGCAAAAACGTCTTATA 58.528 39.130 0.00 0.00 44.26 0.98
437 438 5.095490 GCAGCTTGCAAAAACGTCTTATAT 58.905 37.500 0.00 0.00 44.26 0.86
438 439 5.572896 GCAGCTTGCAAAAACGTCTTATATT 59.427 36.000 0.00 0.00 44.26 1.28
439 440 6.452872 GCAGCTTGCAAAAACGTCTTATATTG 60.453 38.462 0.00 0.00 44.26 1.90
440 441 6.582295 CAGCTTGCAAAAACGTCTTATATTGT 59.418 34.615 0.00 0.00 0.00 2.71
441 442 6.582295 AGCTTGCAAAAACGTCTTATATTGTG 59.418 34.615 0.00 0.00 0.00 3.33
442 443 6.580791 GCTTGCAAAAACGTCTTATATTGTGA 59.419 34.615 0.00 0.00 0.00 3.58
443 444 7.201266 GCTTGCAAAAACGTCTTATATTGTGAG 60.201 37.037 0.00 0.00 0.00 3.51
444 445 7.428282 TGCAAAAACGTCTTATATTGTGAGA 57.572 32.000 0.00 0.00 0.00 3.27
445 446 7.295201 TGCAAAAACGTCTTATATTGTGAGAC 58.705 34.615 0.00 0.00 39.42 3.36
483 484 6.652205 AATAATAACACTCCTTCCTTCCCA 57.348 37.500 0.00 0.00 0.00 4.37
484 485 6.848562 ATAATAACACTCCTTCCTTCCCAT 57.151 37.500 0.00 0.00 0.00 4.00
485 486 7.947782 ATAATAACACTCCTTCCTTCCCATA 57.052 36.000 0.00 0.00 0.00 2.74
486 487 6.652205 AATAACACTCCTTCCTTCCCATAA 57.348 37.500 0.00 0.00 0.00 1.90
487 488 6.848562 ATAACACTCCTTCCTTCCCATAAT 57.151 37.500 0.00 0.00 0.00 1.28
488 489 7.947782 ATAACACTCCTTCCTTCCCATAATA 57.052 36.000 0.00 0.00 0.00 0.98
489 490 6.848562 AACACTCCTTCCTTCCCATAATAT 57.151 37.500 0.00 0.00 0.00 1.28
490 491 7.947782 AACACTCCTTCCTTCCCATAATATA 57.052 36.000 0.00 0.00 0.00 0.86
491 492 7.947782 ACACTCCTTCCTTCCCATAATATAA 57.052 36.000 0.00 0.00 0.00 0.98
492 493 8.525729 ACACTCCTTCCTTCCCATAATATAAT 57.474 34.615 0.00 0.00 0.00 1.28
493 494 8.386264 ACACTCCTTCCTTCCCATAATATAATG 58.614 37.037 0.00 0.00 0.00 1.90
494 495 7.831193 CACTCCTTCCTTCCCATAATATAATGG 59.169 40.741 0.00 0.00 45.20 3.16
505 506 6.122277 CCATAATATAATGGGTGTGGCTAGG 58.878 44.000 0.00 0.00 42.41 3.02
506 507 6.297010 CCATAATATAATGGGTGTGGCTAGGT 60.297 42.308 0.00 0.00 42.41 3.08
507 508 4.910458 ATATAATGGGTGTGGCTAGGTC 57.090 45.455 0.00 0.00 0.00 3.85
508 509 2.263895 TAATGGGTGTGGCTAGGTCT 57.736 50.000 0.00 0.00 0.00 3.85
509 510 1.372501 AATGGGTGTGGCTAGGTCTT 58.627 50.000 0.00 0.00 0.00 3.01
510 511 0.912486 ATGGGTGTGGCTAGGTCTTC 59.088 55.000 0.00 0.00 0.00 2.87
511 512 1.218316 GGGTGTGGCTAGGTCTTCG 59.782 63.158 0.00 0.00 0.00 3.79
512 513 1.542187 GGGTGTGGCTAGGTCTTCGT 61.542 60.000 0.00 0.00 0.00 3.85
513 514 0.108756 GGTGTGGCTAGGTCTTCGTC 60.109 60.000 0.00 0.00 0.00 4.20
514 515 0.456312 GTGTGGCTAGGTCTTCGTCG 60.456 60.000 0.00 0.00 0.00 5.12
515 516 0.607217 TGTGGCTAGGTCTTCGTCGA 60.607 55.000 0.00 0.00 0.00 4.20
516 517 0.179169 GTGGCTAGGTCTTCGTCGAC 60.179 60.000 5.18 5.18 0.00 4.20
517 518 0.322277 TGGCTAGGTCTTCGTCGACT 60.322 55.000 14.70 0.00 34.38 4.18
518 519 0.099082 GGCTAGGTCTTCGTCGACTG 59.901 60.000 14.70 7.51 34.38 3.51
519 520 1.085091 GCTAGGTCTTCGTCGACTGA 58.915 55.000 14.70 9.87 34.38 3.41
520 521 1.467734 GCTAGGTCTTCGTCGACTGAA 59.532 52.381 14.70 16.45 34.38 3.02
521 522 2.095364 GCTAGGTCTTCGTCGACTGAAA 60.095 50.000 14.70 4.48 34.38 2.69
522 523 3.427773 GCTAGGTCTTCGTCGACTGAAAT 60.428 47.826 14.70 7.67 34.38 2.17
523 524 3.662247 AGGTCTTCGTCGACTGAAATT 57.338 42.857 14.70 2.76 34.38 1.82
524 525 3.991367 AGGTCTTCGTCGACTGAAATTT 58.009 40.909 14.70 0.00 34.38 1.82
525 526 5.130292 AGGTCTTCGTCGACTGAAATTTA 57.870 39.130 14.70 2.94 34.38 1.40
526 527 5.535333 AGGTCTTCGTCGACTGAAATTTAA 58.465 37.500 14.70 0.00 34.38 1.52
527 528 5.404667 AGGTCTTCGTCGACTGAAATTTAAC 59.595 40.000 14.70 10.62 34.38 2.01
528 529 5.404667 GGTCTTCGTCGACTGAAATTTAACT 59.595 40.000 14.70 0.00 34.38 2.24
529 530 6.583806 GGTCTTCGTCGACTGAAATTTAACTA 59.416 38.462 14.70 0.00 34.38 2.24
530 531 7.115378 GGTCTTCGTCGACTGAAATTTAACTAA 59.885 37.037 14.70 0.00 34.38 2.24
531 532 8.482429 GTCTTCGTCGACTGAAATTTAACTAAA 58.518 33.333 14.70 0.00 0.00 1.85
532 533 9.199982 TCTTCGTCGACTGAAATTTAACTAAAT 57.800 29.630 14.70 0.00 37.49 1.40
533 534 9.461760 CTTCGTCGACTGAAATTTAACTAAATC 57.538 33.333 14.70 0.00 35.00 2.17
534 535 8.752766 TCGTCGACTGAAATTTAACTAAATCT 57.247 30.769 14.70 0.00 35.00 2.40
535 536 8.857216 TCGTCGACTGAAATTTAACTAAATCTC 58.143 33.333 14.70 0.00 35.00 2.75
536 537 8.644619 CGTCGACTGAAATTTAACTAAATCTCA 58.355 33.333 14.70 0.00 35.00 3.27
583 584 9.767684 AGAAAAAGTAAAAAGGAAAATTTTGCG 57.232 25.926 15.61 0.00 37.42 4.85
584 585 7.962934 AAAAGTAAAAAGGAAAATTTTGCGC 57.037 28.000 15.61 0.00 37.42 6.09
585 586 5.323360 AGTAAAAAGGAAAATTTTGCGCG 57.677 34.783 15.61 0.00 37.42 6.86
586 587 3.600717 AAAAAGGAAAATTTTGCGCGG 57.399 38.095 15.61 0.00 32.81 6.46
587 588 2.517650 AAAGGAAAATTTTGCGCGGA 57.482 40.000 15.61 0.00 33.38 5.54
588 589 2.741759 AAGGAAAATTTTGCGCGGAT 57.258 40.000 15.61 0.00 33.38 4.18
589 590 2.278026 AGGAAAATTTTGCGCGGATC 57.722 45.000 15.61 0.00 33.38 3.36
590 591 1.818674 AGGAAAATTTTGCGCGGATCT 59.181 42.857 15.61 0.00 33.38 2.75
591 592 2.231235 AGGAAAATTTTGCGCGGATCTT 59.769 40.909 15.61 0.00 33.38 2.40
592 593 3.442273 AGGAAAATTTTGCGCGGATCTTA 59.558 39.130 15.61 0.00 33.38 2.10
593 594 4.082463 AGGAAAATTTTGCGCGGATCTTAA 60.082 37.500 15.61 0.00 33.38 1.85
594 595 4.803613 GGAAAATTTTGCGCGGATCTTAAT 59.196 37.500 8.47 0.00 0.00 1.40
595 596 5.276348 GGAAAATTTTGCGCGGATCTTAATG 60.276 40.000 8.47 0.00 0.00 1.90
596 597 4.370364 AATTTTGCGCGGATCTTAATGT 57.630 36.364 8.83 0.00 0.00 2.71
597 598 5.493133 AATTTTGCGCGGATCTTAATGTA 57.507 34.783 8.83 0.00 0.00 2.29
598 599 4.948608 TTTTGCGCGGATCTTAATGTAA 57.051 36.364 8.83 0.00 0.00 2.41
599 600 4.530094 TTTGCGCGGATCTTAATGTAAG 57.470 40.909 8.83 0.00 37.13 2.34
615 616 9.944663 CTTAATGTAAGATCTCTCGGATATAGC 57.055 37.037 0.00 0.00 38.02 2.97
616 617 7.946381 AATGTAAGATCTCTCGGATATAGCA 57.054 36.000 0.00 0.00 34.33 3.49
617 618 8.532186 AATGTAAGATCTCTCGGATATAGCAT 57.468 34.615 0.00 0.00 34.33 3.79
618 619 7.561021 TGTAAGATCTCTCGGATATAGCATC 57.439 40.000 0.00 0.00 34.33 3.91
619 620 5.749596 AAGATCTCTCGGATATAGCATCG 57.250 43.478 0.00 0.00 34.33 3.84
620 621 5.029807 AGATCTCTCGGATATAGCATCGA 57.970 43.478 0.00 0.00 34.33 3.59
621 622 4.814234 AGATCTCTCGGATATAGCATCGAC 59.186 45.833 0.00 0.00 34.33 4.20
622 623 4.209307 TCTCTCGGATATAGCATCGACT 57.791 45.455 0.00 0.00 0.00 4.18
623 624 3.935828 TCTCTCGGATATAGCATCGACTG 59.064 47.826 0.00 0.00 0.00 3.51
624 625 3.935828 CTCTCGGATATAGCATCGACTGA 59.064 47.826 0.00 0.00 0.00 3.41
625 626 3.935828 TCTCGGATATAGCATCGACTGAG 59.064 47.826 0.00 0.00 33.66 3.35
626 627 2.420372 TCGGATATAGCATCGACTGAGC 59.580 50.000 0.00 0.00 0.00 4.26
627 628 2.478709 CGGATATAGCATCGACTGAGCC 60.479 54.545 0.00 0.00 0.00 4.70
628 629 2.493675 GGATATAGCATCGACTGAGCCA 59.506 50.000 0.00 0.00 0.00 4.75
629 630 3.428725 GGATATAGCATCGACTGAGCCAG 60.429 52.174 0.00 1.16 37.52 4.85
639 640 1.709578 ACTGAGCCAGTCAACTGAGA 58.290 50.000 11.70 0.00 41.21 3.27
640 641 1.342819 ACTGAGCCAGTCAACTGAGAC 59.657 52.381 11.70 1.37 41.21 3.36
642 643 2.036992 CTGAGCCAGTCAACTGAGACTT 59.963 50.000 11.70 0.00 46.26 3.01
643 644 3.230976 TGAGCCAGTCAACTGAGACTTA 58.769 45.455 11.70 0.96 46.26 2.24
644 645 3.834813 TGAGCCAGTCAACTGAGACTTAT 59.165 43.478 11.70 0.00 46.26 1.73
645 646 4.284490 TGAGCCAGTCAACTGAGACTTATT 59.716 41.667 11.70 0.00 46.26 1.40
646 647 5.480422 TGAGCCAGTCAACTGAGACTTATTA 59.520 40.000 11.70 0.00 46.26 0.98
647 648 6.014584 TGAGCCAGTCAACTGAGACTTATTAA 60.015 38.462 11.70 0.00 46.26 1.40
648 649 6.951971 AGCCAGTCAACTGAGACTTATTAAT 58.048 36.000 11.70 0.00 46.26 1.40
649 650 8.079211 AGCCAGTCAACTGAGACTTATTAATA 57.921 34.615 11.70 0.00 46.26 0.98
650 651 8.709308 AGCCAGTCAACTGAGACTTATTAATAT 58.291 33.333 11.70 0.00 46.26 1.28
651 652 9.982651 GCCAGTCAACTGAGACTTATTAATATA 57.017 33.333 11.70 0.00 46.26 0.86
686 687 8.578308 TTTAAACATTCGTATACTATGGGACG 57.422 34.615 15.22 0.00 36.66 4.79
687 688 4.778534 ACATTCGTATACTATGGGACGG 57.221 45.455 15.22 0.00 36.02 4.79
688 689 4.401022 ACATTCGTATACTATGGGACGGA 58.599 43.478 15.22 0.00 36.02 4.69
689 690 5.014858 ACATTCGTATACTATGGGACGGAT 58.985 41.667 15.22 0.00 33.83 4.18
690 691 5.340803 CATTCGTATACTATGGGACGGATG 58.659 45.833 0.56 7.12 42.90 3.51
691 692 3.349927 TCGTATACTATGGGACGGATGG 58.650 50.000 0.56 0.00 36.02 3.51
692 693 2.426024 CGTATACTATGGGACGGATGGG 59.574 54.545 0.56 0.00 0.00 4.00
693 694 3.705051 GTATACTATGGGACGGATGGGA 58.295 50.000 0.00 0.00 0.00 4.37
694 695 2.304221 TACTATGGGACGGATGGGAG 57.696 55.000 0.00 0.00 0.00 4.30
695 696 0.264955 ACTATGGGACGGATGGGAGT 59.735 55.000 0.00 0.00 0.00 3.85
696 697 1.502039 ACTATGGGACGGATGGGAGTA 59.498 52.381 0.00 0.00 0.00 2.59
697 698 2.111972 ACTATGGGACGGATGGGAGTAT 59.888 50.000 0.00 0.00 0.00 2.12
701 702 2.701951 TGGGACGGATGGGAGTATAAAC 59.298 50.000 0.00 0.00 0.00 2.01
736 737 2.671070 CCCTCGGAAGCACACCAT 59.329 61.111 0.00 0.00 0.00 3.55
794 796 6.399639 AACCAGGTAAAATCACGTCAAAAT 57.600 33.333 0.00 0.00 0.00 1.82
809 813 8.410141 TCACGTCAAAATAAGAAAAGGAAACAT 58.590 29.630 0.00 0.00 0.00 2.71
837 842 1.271163 CCCAGACAAATACCCACACGT 60.271 52.381 0.00 0.00 0.00 4.49
846 851 6.235664 ACAAATACCCACACGTAATCTTCTT 58.764 36.000 0.00 0.00 0.00 2.52
913 933 0.163788 CGAAAAACGACGAGCTGCAT 59.836 50.000 0.00 0.00 45.77 3.96
986 1037 5.465724 GCCTATATAAAACAGTCCACTTCCG 59.534 44.000 0.00 0.00 0.00 4.30
1003 1054 0.537188 CCGCCACTAATCACACTCCT 59.463 55.000 0.00 0.00 0.00 3.69
1008 1059 2.418746 CCACTAATCACACTCCTTCCGG 60.419 54.545 0.00 0.00 0.00 5.14
1020 1071 1.808390 CTTCCGGCTTCCGTTACCG 60.808 63.158 0.00 0.00 46.80 4.02
1077 1128 3.500642 CTCGCTCGCTCGTCCAGA 61.501 66.667 0.00 0.00 0.00 3.86
1078 1129 3.726631 CTCGCTCGCTCGTCCAGAC 62.727 68.421 0.00 0.00 0.00 3.51
1079 1130 4.838486 CGCTCGCTCGTCCAGACC 62.838 72.222 0.00 0.00 0.00 3.85
1080 1131 3.749064 GCTCGCTCGTCCAGACCA 61.749 66.667 0.00 0.00 0.00 4.02
1081 1132 2.487428 CTCGCTCGTCCAGACCAG 59.513 66.667 0.00 0.00 0.00 4.00
1090 1141 0.035915 GTCCAGACCAGGAAAGGAGC 60.036 60.000 0.00 0.00 39.92 4.70
1091 1142 1.078848 CCAGACCAGGAAAGGAGCG 60.079 63.158 0.00 0.00 0.00 5.03
1124 1177 1.140407 CGGTTCGTTGAGATCTCGGC 61.140 60.000 17.76 11.52 0.00 5.54
1126 1179 1.138883 TTCGTTGAGATCTCGGCCG 59.861 57.895 22.12 22.12 0.00 6.13
1657 1716 4.555610 CCGTAGGCGTAGGAGACT 57.444 61.111 7.66 0.00 46.14 3.24
1658 1717 2.023318 CCGTAGGCGTAGGAGACTG 58.977 63.158 7.66 0.00 46.14 3.51
1659 1718 1.445716 CCGTAGGCGTAGGAGACTGG 61.446 65.000 7.66 0.00 46.14 4.00
1660 1719 0.463295 CGTAGGCGTAGGAGACTGGA 60.463 60.000 0.00 0.00 43.88 3.86
1661 1720 1.310904 GTAGGCGTAGGAGACTGGAG 58.689 60.000 0.00 0.00 43.88 3.86
1662 1721 1.134159 GTAGGCGTAGGAGACTGGAGA 60.134 57.143 0.00 0.00 43.88 3.71
1663 1722 0.394625 AGGCGTAGGAGACTGGAGAC 60.395 60.000 0.00 0.00 43.88 3.36
1664 1723 1.385756 GGCGTAGGAGACTGGAGACC 61.386 65.000 0.00 0.00 43.88 3.85
1665 1724 1.716826 GCGTAGGAGACTGGAGACCG 61.717 65.000 0.00 0.00 43.88 4.79
1666 1725 0.107800 CGTAGGAGACTGGAGACCGA 60.108 60.000 0.00 0.00 43.88 4.69
1667 1726 1.670791 GTAGGAGACTGGAGACCGAG 58.329 60.000 0.00 0.00 43.88 4.63
1668 1727 1.209990 GTAGGAGACTGGAGACCGAGA 59.790 57.143 0.00 0.00 43.88 4.04
1671 1730 0.034863 GAGACTGGAGACCGAGACCT 60.035 60.000 0.00 0.00 0.00 3.85
1802 1865 4.584874 TGATTCATCTTCCTGCCGTTTAA 58.415 39.130 0.00 0.00 0.00 1.52
1803 1866 4.394920 TGATTCATCTTCCTGCCGTTTAAC 59.605 41.667 0.00 0.00 0.00 2.01
1804 1867 3.695830 TCATCTTCCTGCCGTTTAACT 57.304 42.857 0.00 0.00 0.00 2.24
1805 1868 4.811969 TCATCTTCCTGCCGTTTAACTA 57.188 40.909 0.00 0.00 0.00 2.24
1806 1869 4.755411 TCATCTTCCTGCCGTTTAACTAG 58.245 43.478 0.00 0.00 0.00 2.57
1835 1898 3.181496 GGATGGATGCGGTTCTTTTTCTC 60.181 47.826 0.00 0.00 0.00 2.87
1836 1899 2.159382 TGGATGCGGTTCTTTTTCTCC 58.841 47.619 0.00 0.00 0.00 3.71
1862 1925 9.250624 CTTCTAGGAAAGGTTATTTACTCATCG 57.749 37.037 0.00 0.00 0.00 3.84
1870 1933 8.608844 AAGGTTATTTACTCATCGATGGATTC 57.391 34.615 24.61 6.58 0.00 2.52
1878 1941 1.730612 CATCGATGGATTCTGGATGCG 59.269 52.381 17.96 0.00 0.00 4.73
1880 1943 0.863799 CGATGGATTCTGGATGCGTG 59.136 55.000 0.00 0.00 0.00 5.34
1894 1957 2.967459 TGCGTGTATGCAAGTTCTTG 57.033 45.000 8.04 8.04 43.02 3.02
1937 2000 3.376859 TCGTTTGCTGTTGACAAATCTGT 59.623 39.130 0.00 0.00 39.09 3.41
1954 2017 0.613853 TGTCCTCTACCAACTCCGGG 60.614 60.000 0.00 0.00 0.00 5.73
2040 2103 7.658575 TGGTAGTATGAACACAAAAGGTTCTAC 59.341 37.037 6.80 6.75 43.84 2.59
2053 2116 0.248949 GTTCTACCGGAGTCGATGCC 60.249 60.000 9.46 0.00 39.00 4.40
2084 2147 2.057408 GGATTTTGCGGCCATCCCA 61.057 57.895 2.24 0.00 31.66 4.37
2103 2166 2.027385 CAGCCCAGCCTAGAAATTTCC 58.973 52.381 14.61 0.00 0.00 3.13
2113 2176 3.947834 CCTAGAAATTTCCCACGAGCAAT 59.052 43.478 14.61 0.00 0.00 3.56
2114 2177 4.399303 CCTAGAAATTTCCCACGAGCAATT 59.601 41.667 14.61 0.00 0.00 2.32
2116 2179 4.809673 AGAAATTTCCCACGAGCAATTTC 58.190 39.130 14.61 7.75 42.31 2.17
2117 2180 4.524328 AGAAATTTCCCACGAGCAATTTCT 59.476 37.500 14.61 11.28 45.09 2.52
2118 2181 4.440839 AATTTCCCACGAGCAATTTCTC 57.559 40.909 0.00 0.00 0.00 2.87
2120 2183 2.787473 TCCCACGAGCAATTTCTCAT 57.213 45.000 5.94 0.00 33.41 2.90
2121 2184 2.358957 TCCCACGAGCAATTTCTCATG 58.641 47.619 5.94 0.00 33.41 3.07
2226 2498 1.302752 GGTGGGGACGGTACAAACC 60.303 63.158 0.00 0.00 42.95 3.27
2238 2510 3.914364 CGGTACAAACCTACTGTACGAAC 59.086 47.826 6.95 0.00 46.67 3.95
2240 2512 3.017265 ACAAACCTACTGTACGAACCG 57.983 47.619 0.00 0.00 0.00 4.44
2241 2513 2.362077 ACAAACCTACTGTACGAACCGT 59.638 45.455 0.00 0.00 44.35 4.83
2242 2514 3.568007 ACAAACCTACTGTACGAACCGTA 59.432 43.478 0.00 0.00 41.54 4.02
2283 2555 2.703409 GGTCACGCACGCATGATC 59.297 61.111 0.00 0.00 0.00 2.92
2397 2674 1.153369 GCAGCTCCATAGGCGTGAA 60.153 57.895 0.00 0.00 34.52 3.18
2415 2692 3.507009 GCCACAGCTAGCAGCAGC 61.507 66.667 18.83 11.70 45.56 5.25
2416 2693 2.823147 CCACAGCTAGCAGCAGCC 60.823 66.667 18.83 0.00 45.56 4.85
2417 2694 2.046604 CACAGCTAGCAGCAGCCA 60.047 61.111 18.83 0.00 45.56 4.75
2481 2758 4.539083 TGCCTTGCACCGTCGTGT 62.539 61.111 0.00 0.00 42.39 4.49
2498 2775 1.019278 TGTCCCGCTTTCGAATCAGC 61.019 55.000 11.10 11.10 38.10 4.26
2499 2776 1.449601 TCCCGCTTTCGAATCAGCC 60.450 57.895 14.58 0.23 38.10 4.85
2501 2778 2.021931 CGCTTTCGAATCAGCCGC 59.978 61.111 14.58 3.85 38.10 6.53
2615 2939 2.429927 GGTGGCTTTCCAACTTGCT 58.570 52.632 0.00 0.00 46.70 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 9.827198 ATCCCATTATGGATTACATACAAATGT 57.173 29.630 13.63 0.00 42.62 2.71
49 50 9.981460 GACCTTTTAGATATCCCATTATGGATT 57.019 33.333 13.63 2.00 42.62 3.01
50 51 9.356649 AGACCTTTTAGATATCCCATTATGGAT 57.643 33.333 13.63 7.06 46.82 3.41
51 52 8.757307 AGACCTTTTAGATATCCCATTATGGA 57.243 34.615 13.63 0.00 40.96 3.41
68 69 7.991460 CCTCCGTTCCTAAATATAAGACCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
69 70 7.419865 CCCTCCGTTCCTAAATATAAGACCTTT 60.420 40.741 0.00 0.00 0.00 3.11
70 71 6.042897 CCCTCCGTTCCTAAATATAAGACCTT 59.957 42.308 0.00 0.00 0.00 3.50
71 72 5.543020 CCCTCCGTTCCTAAATATAAGACCT 59.457 44.000 0.00 0.00 0.00 3.85
72 73 5.541484 TCCCTCCGTTCCTAAATATAAGACC 59.459 44.000 0.00 0.00 0.00 3.85
73 74 6.267242 ACTCCCTCCGTTCCTAAATATAAGAC 59.733 42.308 0.00 0.00 0.00 3.01
74 75 6.379579 ACTCCCTCCGTTCCTAAATATAAGA 58.620 40.000 0.00 0.00 0.00 2.10
75 76 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
76 77 8.731591 AATACTCCCTCCGTTCCTAAATATAA 57.268 34.615 0.00 0.00 0.00 0.98
77 78 9.827198 TTAATACTCCCTCCGTTCCTAAATATA 57.173 33.333 0.00 0.00 0.00 0.86
78 79 8.731591 TTAATACTCCCTCCGTTCCTAAATAT 57.268 34.615 0.00 0.00 0.00 1.28
79 80 8.731591 ATTAATACTCCCTCCGTTCCTAAATA 57.268 34.615 0.00 0.00 0.00 1.40
80 81 7.628501 ATTAATACTCCCTCCGTTCCTAAAT 57.371 36.000 0.00 0.00 0.00 1.40
81 82 7.786464 ACTATTAATACTCCCTCCGTTCCTAAA 59.214 37.037 0.00 0.00 0.00 1.85
82 83 7.300658 ACTATTAATACTCCCTCCGTTCCTAA 58.699 38.462 0.00 0.00 0.00 2.69
83 84 6.856757 ACTATTAATACTCCCTCCGTTCCTA 58.143 40.000 0.00 0.00 0.00 2.94
84 85 5.713807 ACTATTAATACTCCCTCCGTTCCT 58.286 41.667 0.00 0.00 0.00 3.36
85 86 6.416631 AACTATTAATACTCCCTCCGTTCC 57.583 41.667 0.00 0.00 0.00 3.62
86 87 6.016777 TCGAACTATTAATACTCCCTCCGTTC 60.017 42.308 8.71 8.71 0.00 3.95
87 88 5.829924 TCGAACTATTAATACTCCCTCCGTT 59.170 40.000 0.00 0.00 0.00 4.44
88 89 5.380043 TCGAACTATTAATACTCCCTCCGT 58.620 41.667 0.00 0.00 0.00 4.69
89 90 5.954296 TCGAACTATTAATACTCCCTCCG 57.046 43.478 0.00 0.00 0.00 4.63
90 91 8.148999 ACAAATCGAACTATTAATACTCCCTCC 58.851 37.037 0.00 0.00 0.00 4.30
91 92 8.979574 CACAAATCGAACTATTAATACTCCCTC 58.020 37.037 0.00 0.00 0.00 4.30
92 93 8.701895 TCACAAATCGAACTATTAATACTCCCT 58.298 33.333 0.00 0.00 0.00 4.20
93 94 8.882415 TCACAAATCGAACTATTAATACTCCC 57.118 34.615 0.00 0.00 0.00 4.30
102 103 9.716507 CCGAATTAATTCACAAATCGAACTATT 57.283 29.630 24.23 0.00 36.61 1.73
103 104 7.855904 GCCGAATTAATTCACAAATCGAACTAT 59.144 33.333 24.23 0.00 36.61 2.12
104 105 7.065324 AGCCGAATTAATTCACAAATCGAACTA 59.935 33.333 24.23 0.00 36.61 2.24
105 106 6.027749 GCCGAATTAATTCACAAATCGAACT 58.972 36.000 24.23 0.00 36.61 3.01
106 107 6.027749 AGCCGAATTAATTCACAAATCGAAC 58.972 36.000 24.23 8.14 36.61 3.95
107 108 6.093495 AGAGCCGAATTAATTCACAAATCGAA 59.907 34.615 24.23 0.00 36.61 3.71
108 109 5.584649 AGAGCCGAATTAATTCACAAATCGA 59.415 36.000 24.23 0.00 36.61 3.59
109 110 5.810525 AGAGCCGAATTAATTCACAAATCG 58.189 37.500 24.23 11.63 36.61 3.34
110 111 7.029563 ACAAGAGCCGAATTAATTCACAAATC 58.970 34.615 24.23 14.92 36.61 2.17
111 112 6.924111 ACAAGAGCCGAATTAATTCACAAAT 58.076 32.000 24.23 8.15 36.61 2.32
112 113 6.325919 ACAAGAGCCGAATTAATTCACAAA 57.674 33.333 24.23 0.00 36.61 2.83
113 114 5.957842 ACAAGAGCCGAATTAATTCACAA 57.042 34.783 24.23 0.00 36.61 3.33
114 115 5.957842 AACAAGAGCCGAATTAATTCACA 57.042 34.783 24.23 0.00 36.61 3.58
115 116 6.861055 TGAAAACAAGAGCCGAATTAATTCAC 59.139 34.615 24.23 16.58 36.61 3.18
116 117 6.976088 TGAAAACAAGAGCCGAATTAATTCA 58.024 32.000 24.23 2.24 36.61 2.57
117 118 7.867445 TTGAAAACAAGAGCCGAATTAATTC 57.133 32.000 16.79 16.79 0.00 2.17
118 119 8.831715 ATTTGAAAACAAGAGCCGAATTAATT 57.168 26.923 0.00 0.00 0.00 1.40
119 120 8.831715 AATTTGAAAACAAGAGCCGAATTAAT 57.168 26.923 0.00 0.00 0.00 1.40
120 121 9.921637 ATAATTTGAAAACAAGAGCCGAATTAA 57.078 25.926 0.00 0.00 31.06 1.40
121 122 9.921637 AATAATTTGAAAACAAGAGCCGAATTA 57.078 25.926 0.00 0.00 31.53 1.40
122 123 8.831715 AATAATTTGAAAACAAGAGCCGAATT 57.168 26.923 0.00 0.00 0.00 2.17
123 124 8.831715 AAATAATTTGAAAACAAGAGCCGAAT 57.168 26.923 0.00 0.00 0.00 3.34
124 125 8.655651 AAAATAATTTGAAAACAAGAGCCGAA 57.344 26.923 0.00 0.00 0.00 4.30
125 126 7.923344 TGAAAATAATTTGAAAACAAGAGCCGA 59.077 29.630 0.00 0.00 0.00 5.54
126 127 8.003784 GTGAAAATAATTTGAAAACAAGAGCCG 58.996 33.333 0.00 0.00 0.00 5.52
127 128 8.825745 TGTGAAAATAATTTGAAAACAAGAGCC 58.174 29.630 0.00 0.00 0.00 4.70
140 141 9.801873 ACGCAGCTATTAATGTGAAAATAATTT 57.198 25.926 0.00 0.00 0.00 1.82
141 142 9.236691 CACGCAGCTATTAATGTGAAAATAATT 57.763 29.630 0.00 0.00 0.00 1.40
142 143 8.405531 ACACGCAGCTATTAATGTGAAAATAAT 58.594 29.630 7.99 0.00 0.00 1.28
143 144 7.696035 CACACGCAGCTATTAATGTGAAAATAA 59.304 33.333 7.99 0.00 39.83 1.40
144 145 7.065204 TCACACGCAGCTATTAATGTGAAAATA 59.935 33.333 13.13 0.00 42.44 1.40
145 146 6.029607 CACACGCAGCTATTAATGTGAAAAT 58.970 36.000 7.99 0.00 39.83 1.82
146 147 5.180304 TCACACGCAGCTATTAATGTGAAAA 59.820 36.000 13.13 0.00 42.44 2.29
147 148 4.693095 TCACACGCAGCTATTAATGTGAAA 59.307 37.500 13.13 0.00 42.44 2.69
148 149 4.249661 TCACACGCAGCTATTAATGTGAA 58.750 39.130 13.13 2.10 42.44 3.18
149 150 3.855858 TCACACGCAGCTATTAATGTGA 58.144 40.909 12.04 12.04 42.99 3.58
150 151 4.598406 TTCACACGCAGCTATTAATGTG 57.402 40.909 0.00 8.64 39.00 3.21
151 152 4.875536 TCATTCACACGCAGCTATTAATGT 59.124 37.500 0.00 0.00 0.00 2.71
152 153 5.200454 GTCATTCACACGCAGCTATTAATG 58.800 41.667 0.00 0.00 0.00 1.90
153 154 4.025730 CGTCATTCACACGCAGCTATTAAT 60.026 41.667 0.00 0.00 0.00 1.40
154 155 3.305897 CGTCATTCACACGCAGCTATTAA 59.694 43.478 0.00 0.00 0.00 1.40
155 156 2.857748 CGTCATTCACACGCAGCTATTA 59.142 45.455 0.00 0.00 0.00 0.98
156 157 1.660607 CGTCATTCACACGCAGCTATT 59.339 47.619 0.00 0.00 0.00 1.73
157 158 1.135112 TCGTCATTCACACGCAGCTAT 60.135 47.619 0.00 0.00 37.18 2.97
158 159 0.242555 TCGTCATTCACACGCAGCTA 59.757 50.000 0.00 0.00 37.18 3.32
159 160 1.006220 TCGTCATTCACACGCAGCT 60.006 52.632 0.00 0.00 37.18 4.24
160 161 1.130613 GTCGTCATTCACACGCAGC 59.869 57.895 0.00 0.00 37.18 5.25
161 162 1.275471 ACGTCGTCATTCACACGCAG 61.275 55.000 0.00 0.00 37.18 5.18
162 163 0.040246 TACGTCGTCATTCACACGCA 60.040 50.000 0.00 0.00 37.18 5.24
163 164 0.361184 GTACGTCGTCATTCACACGC 59.639 55.000 0.00 0.00 37.18 5.34
164 165 1.959747 AGTACGTCGTCATTCACACG 58.040 50.000 0.00 0.00 38.67 4.49
165 166 3.601211 GTGTAGTACGTCGTCATTCACAC 59.399 47.826 0.00 6.99 0.00 3.82
166 167 3.250521 TGTGTAGTACGTCGTCATTCACA 59.749 43.478 16.49 16.49 0.00 3.58
167 168 3.813800 TGTGTAGTACGTCGTCATTCAC 58.186 45.455 0.00 8.70 0.00 3.18
168 169 4.690184 ATGTGTAGTACGTCGTCATTCA 57.310 40.909 0.00 0.00 0.00 2.57
169 170 6.424683 TGATATGTGTAGTACGTCGTCATTC 58.575 40.000 0.00 0.59 0.00 2.67
170 171 6.367686 TGATATGTGTAGTACGTCGTCATT 57.632 37.500 0.00 0.00 0.00 2.57
171 172 5.996669 TGATATGTGTAGTACGTCGTCAT 57.003 39.130 0.00 0.31 0.00 3.06
172 173 5.996669 ATGATATGTGTAGTACGTCGTCA 57.003 39.130 0.00 0.00 31.65 4.35
173 174 7.328005 TCTCTATGATATGTGTAGTACGTCGTC 59.672 40.741 0.00 0.00 0.00 4.20
174 175 7.150640 TCTCTATGATATGTGTAGTACGTCGT 58.849 38.462 2.21 2.21 0.00 4.34
175 176 7.578169 TCTCTATGATATGTGTAGTACGTCG 57.422 40.000 0.00 0.00 0.00 5.12
177 178 9.602568 CCTATCTCTATGATATGTGTAGTACGT 57.397 37.037 0.00 0.00 37.07 3.57
178 179 9.602568 ACCTATCTCTATGATATGTGTAGTACG 57.397 37.037 0.00 0.00 35.92 3.67
195 196 9.989296 AGCATCTATAACATCTTACCTATCTCT 57.011 33.333 0.00 0.00 0.00 3.10
216 217 2.593026 AGAGTAGCCCACTAGAGCATC 58.407 52.381 0.00 0.00 37.72 3.91
217 218 2.765689 AGAGTAGCCCACTAGAGCAT 57.234 50.000 0.00 0.00 37.72 3.79
218 219 2.379972 GAAGAGTAGCCCACTAGAGCA 58.620 52.381 0.00 0.00 37.72 4.26
219 220 1.335496 CGAAGAGTAGCCCACTAGAGC 59.665 57.143 0.00 0.00 37.72 4.09
220 221 2.614983 GACGAAGAGTAGCCCACTAGAG 59.385 54.545 0.00 0.00 37.72 2.43
221 222 2.641305 GACGAAGAGTAGCCCACTAGA 58.359 52.381 0.00 0.00 37.72 2.43
222 223 1.677052 GGACGAAGAGTAGCCCACTAG 59.323 57.143 0.00 0.00 37.72 2.57
223 224 1.684248 GGGACGAAGAGTAGCCCACTA 60.684 57.143 0.00 0.00 37.72 2.74
224 225 0.971447 GGGACGAAGAGTAGCCCACT 60.971 60.000 0.00 0.00 41.47 4.00
225 226 1.255667 TGGGACGAAGAGTAGCCCAC 61.256 60.000 0.00 0.00 40.72 4.61
226 227 0.325296 ATGGGACGAAGAGTAGCCCA 60.325 55.000 0.00 0.00 46.91 5.36
227 228 1.700955 TATGGGACGAAGAGTAGCCC 58.299 55.000 0.00 0.00 37.39 5.19
228 229 5.662674 ATATTATGGGACGAAGAGTAGCC 57.337 43.478 0.00 0.00 0.00 3.93
229 230 9.122779 AGTATATATTATGGGACGAAGAGTAGC 57.877 37.037 0.00 0.00 0.00 3.58
231 232 9.624373 GGAGTATATATTATGGGACGAAGAGTA 57.376 37.037 0.00 0.00 0.00 2.59
232 233 7.560626 GGGAGTATATATTATGGGACGAAGAGT 59.439 40.741 0.00 0.00 0.00 3.24
233 234 7.780745 AGGGAGTATATATTATGGGACGAAGAG 59.219 40.741 0.00 0.00 0.00 2.85
234 235 7.649715 AGGGAGTATATATTATGGGACGAAGA 58.350 38.462 0.00 0.00 0.00 2.87
235 236 7.014422 GGAGGGAGTATATATTATGGGACGAAG 59.986 44.444 0.00 0.00 0.00 3.79
236 237 6.837568 GGAGGGAGTATATATTATGGGACGAA 59.162 42.308 0.00 0.00 0.00 3.85
237 238 6.371278 GGAGGGAGTATATATTATGGGACGA 58.629 44.000 0.00 0.00 0.00 4.20
238 239 5.241064 CGGAGGGAGTATATATTATGGGACG 59.759 48.000 0.00 0.00 0.00 4.79
239 240 6.134754 ACGGAGGGAGTATATATTATGGGAC 58.865 44.000 0.00 0.00 0.00 4.46
240 241 6.351317 ACGGAGGGAGTATATATTATGGGA 57.649 41.667 0.00 0.00 0.00 4.37
241 242 7.344871 AGAAACGGAGGGAGTATATATTATGGG 59.655 40.741 0.00 0.00 0.00 4.00
242 243 8.307582 AGAAACGGAGGGAGTATATATTATGG 57.692 38.462 0.00 0.00 0.00 2.74
250 251 9.991906 CAAATATTTAGAAACGGAGGGAGTATA 57.008 33.333 0.00 0.00 0.00 1.47
251 252 8.491958 ACAAATATTTAGAAACGGAGGGAGTAT 58.508 33.333 0.00 0.00 0.00 2.12
252 253 7.854337 ACAAATATTTAGAAACGGAGGGAGTA 58.146 34.615 0.00 0.00 0.00 2.59
253 254 6.718294 ACAAATATTTAGAAACGGAGGGAGT 58.282 36.000 0.00 0.00 0.00 3.85
254 255 7.625828 AACAAATATTTAGAAACGGAGGGAG 57.374 36.000 0.00 0.00 0.00 4.30
255 256 8.411991 AAAACAAATATTTAGAAACGGAGGGA 57.588 30.769 0.00 0.00 0.00 4.20
256 257 9.135843 GAAAAACAAATATTTAGAAACGGAGGG 57.864 33.333 0.00 0.00 0.00 4.30
257 258 9.908152 AGAAAAACAAATATTTAGAAACGGAGG 57.092 29.630 0.00 0.00 0.00 4.30
294 295 5.911752 TGTGCTTTGTATGTGGTCATTTTT 58.088 33.333 0.00 0.00 35.70 1.94
295 296 5.528043 TGTGCTTTGTATGTGGTCATTTT 57.472 34.783 0.00 0.00 35.70 1.82
296 297 5.288804 GTTGTGCTTTGTATGTGGTCATTT 58.711 37.500 0.00 0.00 35.70 2.32
297 298 4.556501 CGTTGTGCTTTGTATGTGGTCATT 60.557 41.667 0.00 0.00 35.70 2.57
298 299 3.058293 CGTTGTGCTTTGTATGTGGTCAT 60.058 43.478 0.00 0.00 38.00 3.06
299 300 2.289274 CGTTGTGCTTTGTATGTGGTCA 59.711 45.455 0.00 0.00 0.00 4.02
300 301 2.546368 TCGTTGTGCTTTGTATGTGGTC 59.454 45.455 0.00 0.00 0.00 4.02
301 302 2.548057 CTCGTTGTGCTTTGTATGTGGT 59.452 45.455 0.00 0.00 0.00 4.16
302 303 2.548057 ACTCGTTGTGCTTTGTATGTGG 59.452 45.455 0.00 0.00 0.00 4.17
303 304 3.247411 TCACTCGTTGTGCTTTGTATGTG 59.753 43.478 6.47 0.00 45.81 3.21
304 305 3.462982 TCACTCGTTGTGCTTTGTATGT 58.537 40.909 6.47 0.00 45.81 2.29
305 306 4.466567 TTCACTCGTTGTGCTTTGTATG 57.533 40.909 6.47 0.00 45.81 2.39
306 307 4.515191 ACATTCACTCGTTGTGCTTTGTAT 59.485 37.500 6.47 0.00 45.81 2.29
307 308 3.874543 ACATTCACTCGTTGTGCTTTGTA 59.125 39.130 6.47 0.00 45.81 2.41
308 309 2.682856 ACATTCACTCGTTGTGCTTTGT 59.317 40.909 6.47 6.95 45.81 2.83
309 310 3.338818 ACATTCACTCGTTGTGCTTTG 57.661 42.857 6.47 6.49 45.81 2.77
310 311 5.932303 AGTATACATTCACTCGTTGTGCTTT 59.068 36.000 5.50 0.00 45.81 3.51
311 312 5.479306 AGTATACATTCACTCGTTGTGCTT 58.521 37.500 5.50 0.00 45.81 3.91
312 313 5.073311 AGTATACATTCACTCGTTGTGCT 57.927 39.130 5.50 0.00 45.81 4.40
313 314 5.103000 AGAGTATACATTCACTCGTTGTGC 58.897 41.667 5.50 0.00 44.77 4.57
314 315 8.683550 TTTAGAGTATACATTCACTCGTTGTG 57.316 34.615 5.50 5.26 44.77 3.33
315 316 9.871238 ATTTTAGAGTATACATTCACTCGTTGT 57.129 29.630 5.50 0.00 44.77 3.32
339 340 9.710900 CCACATACATATGTACACAGACATATT 57.289 33.333 17.69 0.00 46.29 1.28
341 342 8.245195 ACCACATACATATGTACACAGACATA 57.755 34.615 17.69 0.00 44.57 2.29
342 343 7.124573 ACCACATACATATGTACACAGACAT 57.875 36.000 17.69 0.00 44.57 3.06
343 344 6.538945 ACCACATACATATGTACACAGACA 57.461 37.500 17.69 0.00 44.57 3.41
344 345 7.713750 ACTACCACATACATATGTACACAGAC 58.286 38.462 17.69 0.00 44.57 3.51
345 346 7.013942 GGACTACCACATACATATGTACACAGA 59.986 40.741 17.69 0.00 44.57 3.41
346 347 7.145985 GGACTACCACATACATATGTACACAG 58.854 42.308 17.69 10.47 44.57 3.66
347 348 6.608002 TGGACTACCACATACATATGTACACA 59.392 38.462 17.69 0.00 44.57 3.72
348 349 7.046292 TGGACTACCACATACATATGTACAC 57.954 40.000 17.69 2.68 44.57 2.90
385 386 9.855021 CATCCGTTCCTAAATATTTGTCTTTTT 57.145 29.630 11.05 0.00 0.00 1.94
386 387 8.466798 CCATCCGTTCCTAAATATTTGTCTTTT 58.533 33.333 11.05 0.00 0.00 2.27
387 388 7.832187 TCCATCCGTTCCTAAATATTTGTCTTT 59.168 33.333 11.05 0.00 0.00 2.52
388 389 7.343357 TCCATCCGTTCCTAAATATTTGTCTT 58.657 34.615 11.05 0.00 0.00 3.01
389 390 6.895782 TCCATCCGTTCCTAAATATTTGTCT 58.104 36.000 11.05 0.00 0.00 3.41
390 391 6.293462 GCTCCATCCGTTCCTAAATATTTGTC 60.293 42.308 11.05 0.00 0.00 3.18
391 392 5.531287 GCTCCATCCGTTCCTAAATATTTGT 59.469 40.000 11.05 0.00 0.00 2.83
392 393 5.530915 TGCTCCATCCGTTCCTAAATATTTG 59.469 40.000 11.05 1.40 0.00 2.32
393 394 5.690865 TGCTCCATCCGTTCCTAAATATTT 58.309 37.500 5.89 5.89 0.00 1.40
394 395 5.304686 TGCTCCATCCGTTCCTAAATATT 57.695 39.130 0.00 0.00 0.00 1.28
395 396 4.804261 GCTGCTCCATCCGTTCCTAAATAT 60.804 45.833 0.00 0.00 0.00 1.28
396 397 3.494398 GCTGCTCCATCCGTTCCTAAATA 60.494 47.826 0.00 0.00 0.00 1.40
397 398 2.746472 GCTGCTCCATCCGTTCCTAAAT 60.746 50.000 0.00 0.00 0.00 1.40
398 399 1.406887 GCTGCTCCATCCGTTCCTAAA 60.407 52.381 0.00 0.00 0.00 1.85
399 400 0.178068 GCTGCTCCATCCGTTCCTAA 59.822 55.000 0.00 0.00 0.00 2.69
400 401 0.687757 AGCTGCTCCATCCGTTCCTA 60.688 55.000 0.00 0.00 0.00 2.94
401 402 1.557269 AAGCTGCTCCATCCGTTCCT 61.557 55.000 1.00 0.00 0.00 3.36
402 403 1.078143 AAGCTGCTCCATCCGTTCC 60.078 57.895 1.00 0.00 0.00 3.62
403 404 1.986575 GCAAGCTGCTCCATCCGTTC 61.987 60.000 1.00 0.00 40.96 3.95
404 405 2.042831 GCAAGCTGCTCCATCCGTT 61.043 57.895 1.00 0.00 40.96 4.44
405 406 2.437359 GCAAGCTGCTCCATCCGT 60.437 61.111 1.00 0.00 40.96 4.69
406 407 1.588824 TTTGCAAGCTGCTCCATCCG 61.589 55.000 1.00 0.00 45.31 4.18
407 408 0.604578 TTTTGCAAGCTGCTCCATCC 59.395 50.000 1.00 0.00 45.31 3.51
408 409 2.064014 GTTTTTGCAAGCTGCTCCATC 58.936 47.619 1.00 0.00 45.31 3.51
409 410 1.603678 CGTTTTTGCAAGCTGCTCCAT 60.604 47.619 1.00 0.00 45.31 3.41
410 411 0.248990 CGTTTTTGCAAGCTGCTCCA 60.249 50.000 1.00 0.13 45.31 3.86
411 412 0.249031 ACGTTTTTGCAAGCTGCTCC 60.249 50.000 1.00 0.00 45.31 4.70
412 413 1.123655 GACGTTTTTGCAAGCTGCTC 58.876 50.000 1.00 0.00 45.31 4.26
413 414 0.740737 AGACGTTTTTGCAAGCTGCT 59.259 45.000 0.00 0.00 45.31 4.24
414 415 1.559831 AAGACGTTTTTGCAAGCTGC 58.440 45.000 0.00 0.00 45.29 5.25
415 416 6.582295 ACAATATAAGACGTTTTTGCAAGCTG 59.418 34.615 0.00 0.00 0.00 4.24
416 417 6.582295 CACAATATAAGACGTTTTTGCAAGCT 59.418 34.615 0.00 0.00 0.00 3.74
417 418 6.580791 TCACAATATAAGACGTTTTTGCAAGC 59.419 34.615 0.00 0.00 0.00 4.01
418 419 8.015087 TCTCACAATATAAGACGTTTTTGCAAG 58.985 33.333 0.00 0.00 0.00 4.01
419 420 7.801315 GTCTCACAATATAAGACGTTTTTGCAA 59.199 33.333 0.00 0.00 31.01 4.08
420 421 7.295201 GTCTCACAATATAAGACGTTTTTGCA 58.705 34.615 0.00 0.00 31.01 4.08
421 422 7.706454 GTCTCACAATATAAGACGTTTTTGC 57.294 36.000 0.00 0.00 31.01 3.68
457 458 8.787818 TGGGAAGGAAGGAGTGTTATTATTATT 58.212 33.333 0.00 0.00 0.00 1.40
458 459 8.344939 TGGGAAGGAAGGAGTGTTATTATTAT 57.655 34.615 0.00 0.00 0.00 1.28
459 460 7.758820 TGGGAAGGAAGGAGTGTTATTATTA 57.241 36.000 0.00 0.00 0.00 0.98
460 461 6.652205 TGGGAAGGAAGGAGTGTTATTATT 57.348 37.500 0.00 0.00 0.00 1.40
461 462 6.848562 ATGGGAAGGAAGGAGTGTTATTAT 57.151 37.500 0.00 0.00 0.00 1.28
462 463 7.758820 TTATGGGAAGGAAGGAGTGTTATTA 57.241 36.000 0.00 0.00 0.00 0.98
463 464 6.652205 TTATGGGAAGGAAGGAGTGTTATT 57.348 37.500 0.00 0.00 0.00 1.40
464 465 6.848562 ATTATGGGAAGGAAGGAGTGTTAT 57.151 37.500 0.00 0.00 0.00 1.89
465 466 7.947782 ATATTATGGGAAGGAAGGAGTGTTA 57.052 36.000 0.00 0.00 0.00 2.41
466 467 6.848562 ATATTATGGGAAGGAAGGAGTGTT 57.151 37.500 0.00 0.00 0.00 3.32
467 468 7.947782 TTATATTATGGGAAGGAAGGAGTGT 57.052 36.000 0.00 0.00 0.00 3.55
468 469 7.831193 CCATTATATTATGGGAAGGAAGGAGTG 59.169 40.741 12.15 0.00 41.18 3.51
469 470 7.933223 CCATTATATTATGGGAAGGAAGGAGT 58.067 38.462 12.15 0.00 41.18 3.85
481 482 6.122277 CCTAGCCACACCCATTATATTATGG 58.878 44.000 12.90 12.90 43.90 2.74
482 483 6.721318 ACCTAGCCACACCCATTATATTATG 58.279 40.000 0.00 0.00 0.00 1.90
483 484 6.735704 AGACCTAGCCACACCCATTATATTAT 59.264 38.462 0.00 0.00 0.00 1.28
484 485 6.088819 AGACCTAGCCACACCCATTATATTA 58.911 40.000 0.00 0.00 0.00 0.98
485 486 4.913968 AGACCTAGCCACACCCATTATATT 59.086 41.667 0.00 0.00 0.00 1.28
486 487 4.503398 AGACCTAGCCACACCCATTATAT 58.497 43.478 0.00 0.00 0.00 0.86
487 488 3.936461 AGACCTAGCCACACCCATTATA 58.064 45.455 0.00 0.00 0.00 0.98
488 489 2.776665 AGACCTAGCCACACCCATTAT 58.223 47.619 0.00 0.00 0.00 1.28
489 490 2.263895 AGACCTAGCCACACCCATTA 57.736 50.000 0.00 0.00 0.00 1.90
490 491 1.282157 GAAGACCTAGCCACACCCATT 59.718 52.381 0.00 0.00 0.00 3.16
491 492 0.912486 GAAGACCTAGCCACACCCAT 59.088 55.000 0.00 0.00 0.00 4.00
492 493 1.541310 CGAAGACCTAGCCACACCCA 61.541 60.000 0.00 0.00 0.00 4.51
493 494 1.218316 CGAAGACCTAGCCACACCC 59.782 63.158 0.00 0.00 0.00 4.61
494 495 0.108756 GACGAAGACCTAGCCACACC 60.109 60.000 0.00 0.00 0.00 4.16
495 496 0.456312 CGACGAAGACCTAGCCACAC 60.456 60.000 0.00 0.00 0.00 3.82
496 497 0.607217 TCGACGAAGACCTAGCCACA 60.607 55.000 0.00 0.00 0.00 4.17
497 498 0.179169 GTCGACGAAGACCTAGCCAC 60.179 60.000 0.00 0.00 35.22 5.01
498 499 0.322277 AGTCGACGAAGACCTAGCCA 60.322 55.000 10.46 0.00 41.83 4.75
499 500 0.099082 CAGTCGACGAAGACCTAGCC 59.901 60.000 10.46 0.00 41.83 3.93
500 501 1.085091 TCAGTCGACGAAGACCTAGC 58.915 55.000 10.46 0.00 41.83 3.42
501 502 3.826236 TTTCAGTCGACGAAGACCTAG 57.174 47.619 10.46 0.00 41.83 3.02
502 503 4.778534 AATTTCAGTCGACGAAGACCTA 57.221 40.909 10.46 2.46 41.83 3.08
503 504 3.662247 AATTTCAGTCGACGAAGACCT 57.338 42.857 10.46 0.00 41.83 3.85
504 505 5.404667 AGTTAAATTTCAGTCGACGAAGACC 59.595 40.000 10.46 3.94 41.83 3.85
505 506 6.449448 AGTTAAATTTCAGTCGACGAAGAC 57.551 37.500 10.46 10.53 41.23 3.01
506 507 8.578308 TTTAGTTAAATTTCAGTCGACGAAGA 57.422 30.769 10.46 7.10 0.00 2.87
507 508 9.461760 GATTTAGTTAAATTTCAGTCGACGAAG 57.538 33.333 10.46 4.62 36.13 3.79
508 509 9.199982 AGATTTAGTTAAATTTCAGTCGACGAA 57.800 29.630 10.46 13.57 36.13 3.85
509 510 8.752766 AGATTTAGTTAAATTTCAGTCGACGA 57.247 30.769 10.46 7.94 36.13 4.20
510 511 8.644619 TGAGATTTAGTTAAATTTCAGTCGACG 58.355 33.333 10.46 5.48 40.00 5.12
557 558 9.767684 CGCAAAATTTTCCTTTTTACTTTTTCT 57.232 25.926 0.00 0.00 0.00 2.52
558 559 8.520258 GCGCAAAATTTTCCTTTTTACTTTTTC 58.480 29.630 0.30 0.00 0.00 2.29
559 560 7.217258 CGCGCAAAATTTTCCTTTTTACTTTTT 59.783 29.630 8.75 0.00 0.00 1.94
560 561 6.684979 CGCGCAAAATTTTCCTTTTTACTTTT 59.315 30.769 8.75 0.00 0.00 2.27
561 562 6.188871 CGCGCAAAATTTTCCTTTTTACTTT 58.811 32.000 8.75 0.00 0.00 2.66
562 563 5.277106 CCGCGCAAAATTTTCCTTTTTACTT 60.277 36.000 8.75 0.00 0.00 2.24
563 564 4.210328 CCGCGCAAAATTTTCCTTTTTACT 59.790 37.500 8.75 0.00 0.00 2.24
564 565 4.209495 TCCGCGCAAAATTTTCCTTTTTAC 59.791 37.500 8.75 0.00 0.00 2.01
565 566 4.369182 TCCGCGCAAAATTTTCCTTTTTA 58.631 34.783 8.75 0.00 0.00 1.52
566 567 3.198872 TCCGCGCAAAATTTTCCTTTTT 58.801 36.364 8.75 0.00 0.00 1.94
567 568 2.827652 TCCGCGCAAAATTTTCCTTTT 58.172 38.095 8.75 0.00 0.00 2.27
568 569 2.517650 TCCGCGCAAAATTTTCCTTT 57.482 40.000 8.75 0.00 0.00 3.11
569 570 2.231235 AGATCCGCGCAAAATTTTCCTT 59.769 40.909 8.75 0.00 0.00 3.36
570 571 1.818674 AGATCCGCGCAAAATTTTCCT 59.181 42.857 8.75 0.00 0.00 3.36
571 572 2.278026 AGATCCGCGCAAAATTTTCC 57.722 45.000 8.75 0.00 0.00 3.13
572 573 5.288472 ACATTAAGATCCGCGCAAAATTTTC 59.712 36.000 8.75 0.00 0.00 2.29
573 574 5.167845 ACATTAAGATCCGCGCAAAATTTT 58.832 33.333 8.75 0.00 0.00 1.82
574 575 4.743493 ACATTAAGATCCGCGCAAAATTT 58.257 34.783 8.75 0.00 0.00 1.82
575 576 4.370364 ACATTAAGATCCGCGCAAAATT 57.630 36.364 8.75 0.00 0.00 1.82
576 577 5.295787 TCTTACATTAAGATCCGCGCAAAAT 59.704 36.000 8.75 0.00 39.73 1.82
577 578 4.632251 TCTTACATTAAGATCCGCGCAAAA 59.368 37.500 8.75 0.00 39.73 2.44
578 579 4.185394 TCTTACATTAAGATCCGCGCAAA 58.815 39.130 8.75 0.00 39.73 3.68
579 580 3.787785 TCTTACATTAAGATCCGCGCAA 58.212 40.909 8.75 0.00 39.73 4.85
580 581 3.446310 TCTTACATTAAGATCCGCGCA 57.554 42.857 8.75 0.00 39.73 6.09
589 590 9.944663 GCTATATCCGAGAGATCTTACATTAAG 57.055 37.037 0.00 0.00 36.33 1.85
590 591 9.462606 TGCTATATCCGAGAGATCTTACATTAA 57.537 33.333 0.00 0.00 36.33 1.40
591 592 9.634021 ATGCTATATCCGAGAGATCTTACATTA 57.366 33.333 0.00 0.00 36.33 1.90
592 593 7.946381 TGCTATATCCGAGAGATCTTACATT 57.054 36.000 0.00 0.00 36.33 2.71
593 594 7.041440 CGATGCTATATCCGAGAGATCTTACAT 60.041 40.741 0.00 0.00 36.33 2.29
594 595 6.258947 CGATGCTATATCCGAGAGATCTTACA 59.741 42.308 0.00 0.00 36.33 2.41
595 596 6.480651 TCGATGCTATATCCGAGAGATCTTAC 59.519 42.308 0.00 0.00 36.33 2.34
596 597 6.480651 GTCGATGCTATATCCGAGAGATCTTA 59.519 42.308 0.00 0.00 36.33 2.10
597 598 5.295787 GTCGATGCTATATCCGAGAGATCTT 59.704 44.000 0.00 0.00 36.33 2.40
598 599 4.814234 GTCGATGCTATATCCGAGAGATCT 59.186 45.833 0.00 0.00 36.33 2.75
599 600 4.814234 AGTCGATGCTATATCCGAGAGATC 59.186 45.833 0.00 0.00 36.33 2.75
600 601 4.574421 CAGTCGATGCTATATCCGAGAGAT 59.426 45.833 0.00 0.00 39.15 2.75
601 602 3.935828 CAGTCGATGCTATATCCGAGAGA 59.064 47.826 0.00 0.00 0.00 3.10
602 603 3.935828 TCAGTCGATGCTATATCCGAGAG 59.064 47.826 0.00 0.00 0.00 3.20
603 604 3.935828 CTCAGTCGATGCTATATCCGAGA 59.064 47.826 0.00 0.00 0.00 4.04
604 605 3.486708 GCTCAGTCGATGCTATATCCGAG 60.487 52.174 0.00 0.00 0.00 4.63
605 606 2.420372 GCTCAGTCGATGCTATATCCGA 59.580 50.000 0.00 0.00 0.00 4.55
606 607 2.478709 GGCTCAGTCGATGCTATATCCG 60.479 54.545 0.00 0.00 0.00 4.18
607 608 2.493675 TGGCTCAGTCGATGCTATATCC 59.506 50.000 0.00 0.00 0.00 2.59
608 609 3.192422 ACTGGCTCAGTCGATGCTATATC 59.808 47.826 2.38 0.00 41.21 1.63
609 610 3.161067 ACTGGCTCAGTCGATGCTATAT 58.839 45.455 2.38 0.00 41.21 0.86
610 611 2.587522 ACTGGCTCAGTCGATGCTATA 58.412 47.619 2.38 0.00 41.21 1.31
611 612 1.407936 ACTGGCTCAGTCGATGCTAT 58.592 50.000 2.38 0.00 41.21 2.97
612 613 2.887790 ACTGGCTCAGTCGATGCTA 58.112 52.632 2.38 0.00 41.21 3.49
613 614 3.705502 ACTGGCTCAGTCGATGCT 58.294 55.556 2.38 0.00 41.21 3.79
621 622 1.617850 AGTCTCAGTTGACTGGCTCAG 59.382 52.381 10.97 1.92 44.64 3.35
622 623 1.709578 AGTCTCAGTTGACTGGCTCA 58.290 50.000 10.97 0.00 44.64 4.26
623 624 2.829741 AAGTCTCAGTTGACTGGCTC 57.170 50.000 10.97 2.73 45.49 4.70
624 625 4.899352 AATAAGTCTCAGTTGACTGGCT 57.101 40.909 10.97 5.02 45.49 4.75
625 626 8.894768 ATATTAATAAGTCTCAGTTGACTGGC 57.105 34.615 10.97 3.03 45.49 4.85
660 661 9.033481 CGTCCCATAGTATACGAATGTTTAAAA 57.967 33.333 15.70 0.00 37.53 1.52
661 662 7.652909 CCGTCCCATAGTATACGAATGTTTAAA 59.347 37.037 15.70 0.00 37.53 1.52
662 663 7.014134 TCCGTCCCATAGTATACGAATGTTTAA 59.986 37.037 15.70 1.79 37.53 1.52
663 664 6.489700 TCCGTCCCATAGTATACGAATGTTTA 59.510 38.462 15.70 3.51 37.53 2.01
664 665 5.302568 TCCGTCCCATAGTATACGAATGTTT 59.697 40.000 15.70 0.00 37.53 2.83
665 666 4.828939 TCCGTCCCATAGTATACGAATGTT 59.171 41.667 15.70 0.00 37.53 2.71
666 667 4.401022 TCCGTCCCATAGTATACGAATGT 58.599 43.478 15.70 0.00 37.53 2.71
667 668 5.340803 CATCCGTCCCATAGTATACGAATG 58.659 45.833 12.02 12.02 37.53 2.67
668 669 4.401519 CCATCCGTCCCATAGTATACGAAT 59.598 45.833 5.67 0.00 37.53 3.34
669 670 3.760151 CCATCCGTCCCATAGTATACGAA 59.240 47.826 5.67 0.00 37.53 3.85
670 671 3.349927 CCATCCGTCCCATAGTATACGA 58.650 50.000 5.67 0.00 37.53 3.43
671 672 2.426024 CCCATCCGTCCCATAGTATACG 59.574 54.545 0.00 0.00 35.20 3.06
672 673 3.700038 CTCCCATCCGTCCCATAGTATAC 59.300 52.174 0.00 0.00 0.00 1.47
673 674 3.335786 ACTCCCATCCGTCCCATAGTATA 59.664 47.826 0.00 0.00 0.00 1.47
674 675 2.111972 ACTCCCATCCGTCCCATAGTAT 59.888 50.000 0.00 0.00 0.00 2.12
675 676 1.502039 ACTCCCATCCGTCCCATAGTA 59.498 52.381 0.00 0.00 0.00 1.82
676 677 0.264955 ACTCCCATCCGTCCCATAGT 59.735 55.000 0.00 0.00 0.00 2.12
677 678 2.304221 TACTCCCATCCGTCCCATAG 57.696 55.000 0.00 0.00 0.00 2.23
678 679 4.407329 TTATACTCCCATCCGTCCCATA 57.593 45.455 0.00 0.00 0.00 2.74
679 680 3.269592 TTATACTCCCATCCGTCCCAT 57.730 47.619 0.00 0.00 0.00 4.00
680 681 2.701951 GTTTATACTCCCATCCGTCCCA 59.298 50.000 0.00 0.00 0.00 4.37
681 682 2.038164 GGTTTATACTCCCATCCGTCCC 59.962 54.545 0.00 0.00 0.00 4.46
682 683 2.701951 TGGTTTATACTCCCATCCGTCC 59.298 50.000 0.00 0.00 0.00 4.79
683 684 4.315803 CATGGTTTATACTCCCATCCGTC 58.684 47.826 0.00 0.00 36.85 4.79
684 685 3.072476 CCATGGTTTATACTCCCATCCGT 59.928 47.826 2.57 0.00 36.85 4.69
685 686 3.326588 TCCATGGTTTATACTCCCATCCG 59.673 47.826 12.58 0.00 36.85 4.18
686 687 4.506802 GGTCCATGGTTTATACTCCCATCC 60.507 50.000 12.58 0.00 36.85 3.51
687 688 4.104102 TGGTCCATGGTTTATACTCCCATC 59.896 45.833 12.58 0.00 36.85 3.51
688 689 4.051478 TGGTCCATGGTTTATACTCCCAT 58.949 43.478 12.58 0.00 39.55 4.00
689 690 3.201266 GTGGTCCATGGTTTATACTCCCA 59.799 47.826 12.58 2.68 0.00 4.37
690 691 3.743269 CGTGGTCCATGGTTTATACTCCC 60.743 52.174 12.58 0.15 0.00 4.30
691 692 3.463944 CGTGGTCCATGGTTTATACTCC 58.536 50.000 12.58 3.80 0.00 3.85
692 693 2.870411 GCGTGGTCCATGGTTTATACTC 59.130 50.000 12.58 0.00 0.00 2.59
693 694 2.420967 GGCGTGGTCCATGGTTTATACT 60.421 50.000 12.58 0.00 0.00 2.12
694 695 1.944709 GGCGTGGTCCATGGTTTATAC 59.055 52.381 12.58 1.29 0.00 1.47
695 696 1.134037 GGGCGTGGTCCATGGTTTATA 60.134 52.381 12.58 0.00 0.00 0.98
696 697 0.395173 GGGCGTGGTCCATGGTTTAT 60.395 55.000 12.58 0.00 0.00 1.40
697 698 1.001887 GGGCGTGGTCCATGGTTTA 60.002 57.895 12.58 0.00 0.00 2.01
794 796 8.759782 TGGGTTTTTACATGTTTCCTTTTCTTA 58.240 29.630 2.30 0.00 0.00 2.10
802 806 5.523438 TGTCTGGGTTTTTACATGTTTCC 57.477 39.130 2.30 0.00 0.00 3.13
809 813 5.302313 GTGGGTATTTGTCTGGGTTTTTACA 59.698 40.000 0.00 0.00 0.00 2.41
816 820 1.271163 CGTGTGGGTATTTGTCTGGGT 60.271 52.381 0.00 0.00 0.00 4.51
837 842 3.347216 GCTGGGCTTGTGAAGAAGATTA 58.653 45.455 0.00 0.00 0.00 1.75
864 884 1.979155 GGAAGGTTCCTGGCTTGGC 60.979 63.158 1.16 0.00 44.11 4.52
891 911 1.920553 CAGCTCGTCGTTTTTCGTTC 58.079 50.000 0.00 0.00 40.80 3.95
986 1037 2.633488 GGAAGGAGTGTGATTAGTGGC 58.367 52.381 0.00 0.00 0.00 5.01
1020 1071 1.615165 GGGAGGAGACGGAAGGAACC 61.615 65.000 0.00 0.00 0.00 3.62
1077 1128 0.890996 CTTTGCGCTCCTTTCCTGGT 60.891 55.000 9.73 0.00 0.00 4.00
1078 1129 1.878775 CTTTGCGCTCCTTTCCTGG 59.121 57.895 9.73 0.00 0.00 4.45
1079 1130 1.211190 GCTTTGCGCTCCTTTCCTG 59.789 57.895 9.73 0.00 35.14 3.86
1080 1131 1.228245 TGCTTTGCGCTCCTTTCCT 60.228 52.632 9.73 0.00 40.11 3.36
1081 1132 1.211190 CTGCTTTGCGCTCCTTTCC 59.789 57.895 9.73 0.00 40.11 3.13
1272 1328 2.437359 CAGCTTCTTGGCCTCCCG 60.437 66.667 3.32 0.00 0.00 5.14
1655 1714 4.747218 GAGGTCTCGGTCTCCAGT 57.253 61.111 0.00 0.00 0.00 4.00
1709 1771 1.153369 ATGTCACCATTCGCCTCCG 60.153 57.895 0.00 0.00 0.00 4.63
1802 1865 2.887783 CGCATCCATCCACTAGTCTAGT 59.112 50.000 6.71 6.71 40.28 2.57
1803 1866 2.230025 CCGCATCCATCCACTAGTCTAG 59.770 54.545 5.27 5.27 0.00 2.43
1804 1867 2.239400 CCGCATCCATCCACTAGTCTA 58.761 52.381 0.00 0.00 0.00 2.59
1805 1868 1.043816 CCGCATCCATCCACTAGTCT 58.956 55.000 0.00 0.00 0.00 3.24
1806 1869 0.753262 ACCGCATCCATCCACTAGTC 59.247 55.000 0.00 0.00 0.00 2.59
1836 1899 9.250624 CGATGAGTAAATAACCTTTCCTAGAAG 57.749 37.037 0.00 0.00 0.00 2.85
1862 1925 1.959042 ACACGCATCCAGAATCCATC 58.041 50.000 0.00 0.00 0.00 3.51
1870 1933 1.372582 ACTTGCATACACGCATCCAG 58.627 50.000 0.00 0.00 42.62 3.86
1878 1941 5.673337 TTCTGACAAGAACTTGCATACAC 57.327 39.130 13.50 1.66 44.03 2.90
1880 1943 6.593382 AGAGATTCTGACAAGAACTTGCATAC 59.407 38.462 13.50 5.07 45.12 2.39
1892 1955 9.072375 ACGATGAGATTATAGAGATTCTGACAA 57.928 33.333 0.00 0.00 0.00 3.18
1894 1957 9.906660 AAACGATGAGATTATAGAGATTCTGAC 57.093 33.333 0.00 0.00 0.00 3.51
1911 1974 3.607422 TTGTCAACAGCAAACGATGAG 57.393 42.857 0.00 0.00 0.00 2.90
1937 2000 1.001248 CCCCGGAGTTGGTAGAGGA 59.999 63.158 0.73 0.00 0.00 3.71
1940 2003 1.684734 GCTCCCCGGAGTTGGTAGA 60.685 63.158 0.73 0.00 43.70 2.59
1942 2005 3.072468 CGCTCCCCGGAGTTGGTA 61.072 66.667 0.73 0.00 43.70 3.25
1945 2008 4.821589 GCTCGCTCCCCGGAGTTG 62.822 72.222 0.73 5.82 43.70 3.16
2053 2116 2.256174 CAAAATCCATTGCAGAGCGTG 58.744 47.619 0.00 0.00 0.00 5.34
2084 2147 1.063642 GGGAAATTTCTAGGCTGGGCT 60.064 52.381 17.42 1.68 0.00 5.19
2103 2166 2.353889 CCTCATGAGAAATTGCTCGTGG 59.646 50.000 28.25 20.31 46.81 4.94
2113 2176 5.018149 TGAATTCAATGGCCTCATGAGAAA 58.982 37.500 24.62 9.20 34.31 2.52
2114 2177 4.602107 TGAATTCAATGGCCTCATGAGAA 58.398 39.130 24.62 8.93 34.76 2.87
2116 2179 4.796290 GCATGAATTCAATGGCCTCATGAG 60.796 45.833 25.17 16.24 43.93 2.90
2117 2180 3.069016 GCATGAATTCAATGGCCTCATGA 59.931 43.478 25.17 15.02 43.93 3.07
2118 2181 3.069586 AGCATGAATTCAATGGCCTCATG 59.930 43.478 19.47 19.47 44.00 3.07
2120 2183 2.742348 AGCATGAATTCAATGGCCTCA 58.258 42.857 13.09 0.00 0.00 3.86
2121 2184 3.814005 AAGCATGAATTCAATGGCCTC 57.186 42.857 13.09 0.00 0.00 4.70
2380 2657 1.156645 GCTTCACGCCTATGGAGCTG 61.157 60.000 0.00 0.00 46.31 4.24
2381 2658 1.144936 GCTTCACGCCTATGGAGCT 59.855 57.895 3.76 0.00 46.31 4.09
2411 2688 4.395583 GTCGTTGCTGCTGGCTGC 62.396 66.667 15.66 15.66 42.39 5.25
2412 2689 2.962827 CTGTCGTTGCTGCTGGCTG 61.963 63.158 0.00 0.00 42.39 4.85
2413 2690 2.667536 CTGTCGTTGCTGCTGGCT 60.668 61.111 0.00 0.00 42.39 4.75
2414 2691 2.666190 TCTGTCGTTGCTGCTGGC 60.666 61.111 0.00 0.00 42.22 4.85
2415 2692 1.563435 CTGTCTGTCGTTGCTGCTGG 61.563 60.000 0.00 0.00 0.00 4.85
2416 2693 1.858041 CTGTCTGTCGTTGCTGCTG 59.142 57.895 0.00 0.00 0.00 4.41
2417 2694 1.958205 GCTGTCTGTCGTTGCTGCT 60.958 57.895 0.00 0.00 0.00 4.24
2419 2696 1.159713 TTGGCTGTCTGTCGTTGCTG 61.160 55.000 0.00 0.00 0.00 4.41
2420 2697 1.146041 TTGGCTGTCTGTCGTTGCT 59.854 52.632 0.00 0.00 0.00 3.91
2421 2698 1.279840 GTTGGCTGTCTGTCGTTGC 59.720 57.895 0.00 0.00 0.00 4.17
2422 2699 0.874175 TCGTTGGCTGTCTGTCGTTG 60.874 55.000 0.00 0.00 0.00 4.10
2423 2700 0.597637 CTCGTTGGCTGTCTGTCGTT 60.598 55.000 0.00 0.00 0.00 3.85
2424 2701 1.007271 CTCGTTGGCTGTCTGTCGT 60.007 57.895 0.00 0.00 0.00 4.34
2425 2702 2.375766 GCTCGTTGGCTGTCTGTCG 61.376 63.158 0.00 0.00 0.00 4.35
2426 2703 1.300931 TGCTCGTTGGCTGTCTGTC 60.301 57.895 0.00 0.00 0.00 3.51
2427 2704 1.595382 GTGCTCGTTGGCTGTCTGT 60.595 57.895 0.00 0.00 0.00 3.41
2428 2705 2.661566 CGTGCTCGTTGGCTGTCTG 61.662 63.158 0.00 0.00 0.00 3.51
2429 2706 2.356313 CGTGCTCGTTGGCTGTCT 60.356 61.111 0.00 0.00 0.00 3.41
2481 2758 1.449601 GGCTGATTCGAAAGCGGGA 60.450 57.895 14.06 0.00 40.46 5.14
2590 2914 0.891904 TTGGAAAGCCACCCGTAAGC 60.892 55.000 0.00 0.00 45.94 3.09
2591 2915 0.879090 GTTGGAAAGCCACCCGTAAG 59.121 55.000 0.00 0.00 45.94 2.34
2615 2939 2.643272 GGACACGACGACAGAGCA 59.357 61.111 0.00 0.00 0.00 4.26
2655 2983 2.798148 AATCCAACGCGTCCACTCCC 62.798 60.000 14.44 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.