>input_sequence_69740
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----------TCCTTCCGGCTTCCGTTACCGGTTCCTTCCGTCTCCTCCCATTCATTAAGGCGAGAGCCCCTCGCTCGCT
CGTCCAGACCAGGAAAGGAGCGCAAAGCAG--GCGGGCGGTTCGTTGAGATCTCGGCCGCGCCATGCCGAGGACGAGGAG
GCTGCGCGGCGGGTTCCGGCTCGGCCGCAAGCTGCTGACCGTGTGGCGGTGGGCGCTCTGCGGCCGGAGCCGGCGCCGGG
GGGGC---GGCTACCTCCGCCTCGACACGCCGTGCCCGAAGGAGGGCCGGGAGGCCAAGAAGCTGGCGCCCGTGCTGCGG
TGGGGGCGGTCGCTGGCGCGGCTCCTCAGCCTCGGCCGGACGGACCGCGGCCGGCGAACGCTCGGCGGCGGCGGCGGCG-
--AGGCGGTGAAGACCCCCAAGGGGCAGGTGGCGGTGTACGTCGGCGGCGGCGGGCCCGGGGAGCCGCTCCGGTACGTGG
TGCCCGTGGTGTACTTCAACCACCCCATGTTCGGGGAGCTGCTGCGGGAGGCCGAGGAGGCGTTCGGCTTCCAGCACCCC
GGCGGCATCACCATCCCCTGCGCCGCCGCCAAGTTCGAGCGCGCCGCCGCCGTGGCCGCCGCCGGGAAGAAGGGGTTCGC
CAGGTGGTAGCATCGGGCCCGTAGGCGTAGGAGACTGGAGACCGAGACCTCGGCCCTCGCTGGCCTGA---CCGCCTCCG
CTGCGTGCGGCGGAGGCGAATGGTGACATGGTGTACAGCGCATGTGTGTTTCCATC------------------------
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>chr2A_1_TraesCS2A01G386400
AAAAGGAATGAATCTACACTTTAAAGTATGTCTATATACATTTGTATGTAATCCATAATGGGATATCTAAAAGGTCTTAT
ATTTAGGAACGGAGGGAGTATTAATAGTTCGATTTGTGAATTAATTCGGCTCTTGTTTTCAAATTATTTTCACATTAATA
GCTGCGTGTGAATGACGACGTACTACACATATCATAGAGATAGGTAAGATGTTATAGATGCTCTAGTGGGCTACTCTTCG
TCCCATAATATATACTCCCTCCGTTTCTAAATATTTGTTTTTCTAGAGATTTCAAAAAATGACCACATACAAAGCACAAC
GAGTGAATGTATACTCTAAAATATGTCTGTGTACATATGTATGTGGTAGTCCATTTAAAATCTCTAAAAAGACAAATATT
TAGGAACGGATGGAGCAGCTTGCAAAAACGTCTTATATTGTGAGACGTTTCTTTTATAATAATAATAACACTCCTTCCTT
CCCATAATATAATGGGTGTGGCTAGGTCTTCGTCGACTGAAATTTAACTAAATCTCAATCAATGAAAGAAAAATAAAAGA
AAAAGTAAAAAGGAAAATTTTGCGCGGATCTTAATGTAAGATCTCTCGGATATAGCATCGACTGAGCCAGTCAACTGAGA
CTTATTAATATAATAGCGTTTTTTAAACATTCGTATACTATGGGACGGATGGGAGTATAAACCATGGACCACGCCCGTGC
CCTCGGAAGCACACCATCCATTAGCGAACAAA-ACGCCGCCTCGCCACCGAAAACCAGGTAAAATCACGTCAAAATAAGA
--AAAGGAAACATGTAAAAACCCAGACAAATACCC-ACACGTAATCTTCTT---------------CACAAGCCCAGCGC
CGAGCCAAGCCAGGAACCTTCCTTTCATCAGAACGAAAAACGACGAGCTGCATG-----------AAATTTTAG------
-----TAGGATCTCAAAAAAGCCGCGC---------CTCTCGTGAGGCTGACGCCTATATAAAACAGTCCACTTCCGCCA
CTAATCACACTCCTTCCGGCTTCCGTTACCGGTTCCTTCCGTCTCCTCCCATTCATTAAGGCGAGAGCCCCTCGCTCGCT
CGTCCAGACCAGGAAAGGAGCGCAAAGCAG--GCGGGCGGTTCGTTGAGATCTCGGCCGCGCCATGCCGAGGACGAGGAG
GCTGCGCGGCGGGTTCCGGCTCGGCCGCAAGCTGCTGACCGTGTGGCGGTGGGCGCTCTGCGGCCGGAGCCGGCGCCGGG
GGGGC---GGCTACCTCCGCCTCGACACGCCGTGCCCGAAGGAGGGCCGGGAGGCCAAGAAGCTGGCGCCCGTGCTGCGG
TGGGGGCGGTCGCTGGCGCGGCTCCTCAGCCTCGGCCGGACGGACCGCGGCCGGCGAACGCTCGGCGGCGGCGGCGGCG-
--AGGCGGTGAAGACCCCCAAGGGGCAGGTGGCGGTGTACGTCGGCGGCGGCGGGCCCGGGGAGCCGCTCCGGTACGTGG
TGCCCGTGGTGTACTTCAACCACCCCATGTTCGGGGAGCTGCTGCGGGAGGCCGAGGAGGCGTTCGGCTTCCAGCACCCC
GGCGGCATCACCATCCCCTGCGCCGCCGCCAAGTTCGAGCGCGCCGCCGCCGTGGCCGCCGCCGGGAAGAAGGGGTTCGC
CAGGTGGTAGCATCGGGCCCGTAGGCGTAGGAGACTGGAGACCGAGACCTCGGCCCTCGCTGGCCTGA---CCGCCTCCG
CTGCGTGCGGCGGAGGCGAATGGTGACATGGTGTACAGCGCATGTGTGTTTCCATCAGCAAAGGGGCTAATTTTGTTCCA
TTGATTCATCTTCCTGCCGTTT-AACTAGACTAGTGGATGGATGCGGTTCTTTTTCTCCTTCTAGGAAAGGTTATTTACT
CATCGATGGATTCTGGATGCGTGTATGCAAGTTCTTGTCAGAATCTCTATAATCTCATCGTTTGCTGTTGACAAATCTGT
CCTCTACCAACTCCGGGGAGCGAGCGAATCGGGCCGACGAATTTCTCTTACGAACGTTCAATTCAAGACCGGAGGATGGT
AGTATGAACACAAAAGGTTCTACCGGAGTCGATGCCACGCTCTGCAATGGATTTTGCGGCCATCCCAGCCCAGCCTAGAA
ATTTCCCACGAGCAATTTCTCATGAG------------------------------------------------------
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-------------------------------------------------------------------GCCATTGAATTCA
TGCTTATCTATCTCTGACTAGGGAGTACGGGGAACCGTGCCACTCAGTTACTCCTCC----TCCCCACCTAGGAAGG---
-TGGGGACGGTACAAACCTACTGTACGAACCGTACGCACCCCGGCCGGCCGTACCTCGGTCACGCACGCATGATC-----
CGGCGGTTGGTTGGAGCACGCTCCTTTGGCCATGCCGCTTTCGCACGCCATTGCCATACCCCCGCCCGCTCGCCCTGCCC
GTGCCTGTGCAAGGGGCAGCTCCATAGGCGTGAAGCCACAGCTAGCAGCAGCCAGCAGCAACGACAGACAGCCAACGAGC
ACGGCGTCACTCCCGTCCCGTGCCTTGCACCGTCGTGTCCCGCTTTCGAATCAGCCGCACCGCCCCTGCATGGCCCCGTG
CG-----------------------------------------------GCGCGCGCGCGCGCATCCTTTTCTTCCGGTG
GAATTCCACCGCGACGGCGATGGATTCCGTCCGGCTTACGGGTGGCTTTCCAACTTGCTGCTCTGTCGTCGTGTCCGTGC
A----GATGGATGAATTCCGCGGGGAGTGGACGCGTTGGATTCAGGTCGCCGTCCCGGGGAGGTGCACTTGCGCCACTGG
GCTACGCAAGCCGAGATGGATCCGGGAAATCGCCCGGCTTTG
>chr2D_699
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----------------------------------------------------------AAATCATGGACCACGACCGTGC
CCTCGGAAGCACACCAGCCATTAGCGAACAAACACGCCGCCTCGCCACCGAAAACCAGGTAAAATCACCTCAAAAGAAGA
AGAAAACAAACACGTAAAATCCCAGACAAATACCCCACACGAAATCTCCTCCTGCCAGTCAGTAGGCACAAGCCCAACGC
CGAACCGAGCCAGGAACCTTCCTTTCATCAAAACGGAAAACGACGAGCTGCAGGAAAACACATCAAAATTTTAG------
-----TAGGATCTCAAAAACGCCGCGCACAGCCCCGCTCTCGCGAGGCTGACGCCTATATAGAACAGTCCACTTCCCCCA
CTAATCACACTCCCTCCGACTTCCGTTACCAGTTCCTTCCGTCTCCTCCCATTCATTAAGGCGAGAGCCCCTCGCTCGCT
CGTCCAG-----GAAAGGAGGACAAAGGGAGCGCGGGCGGTTCGTTGAGATCTCGGTCTCGCCATGCCGAGGACAAGGAG
GCTGCGCGGCGGGTTCCGGCTCGGCCGGAAGCTGCTGACCGCATGGCGGTGGGCGCTCTGCGGCCGGAACCGGCGCCGGG
GCGGCGGTGGCTACCTCCGCCTCGACACGCCGTGCCCGATGGAGGGCAGGGAGGCCAAGAAGCTGGCACCGGTGCTGCGG
TGGGGCAAGTCGCTGGCGCGGCTCCTCAGCCTCGGCCGGGCGGACCGCGGGCAGCAGACGCT---------------CG-
--AGGCGGTGAAGACCCCCAAGGGGCAGGTGGCGGTGTACGTCGGCGGCGGCGGGCCCGGGGAGCCGCTGCGGTACGTGG
TGCCCGTGGTGTACTTCAACCACCCCATGTTCGGGGAGCTGCTGCGGGAGGCCGAGGAGGCGTTCGGCTTCCAGCACCCC
GGCGGCATCACCATCCCCTGCGCCGCCGCCAAGTTCGAGCGCGCCGCCGCCGTGGCCGCCGCCGGCAAGAAGGGGTTCGC
CAGGTGGTAGCATCGATCCCGTAGGCCTAGGAGTC------------CC--------------------CGCCTCCGCTG
CTGCGTGCGGTGGAGGCGAATGGTGACATGGTGTACAGCGCATGTGTGTTTCCATCAGCAAAGGGGCTAATTTTGTTCCA
TTGATTCATCTTCCTGCCGTTTTA-----ACTAGTGGATGGATGCGGTTCTTTTTCTTTTTCTAGGAAAGGTTATTTACT
CATCTATGGATTGTCGATGCATCTATGCGAGTTCATCTCAGAATCTCTATAATTTCAGCGTTTGCTGTTGACAAATCTGA
CCCCGACGAACTCCGGCGAGCGAGCGAATCGGGCCGACGAATTTCTCTTACGAACGTTCAATTCAAGACCGGAGGATGGT
AGTATGAACACAAAAGGTTCTATCGGAGCAGATGCTACGCTCTGCAATGGATTTTGCGGCCATCCC-GCCCAGCCTAGAA
ATTTCTCACGAGCAAAATACTAGCAG------------------------------------------------------
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------------------------------------------------------------------CGCCATTGAATTCA
TGCTTATCTATCTCTGACTAGGGAGTACGGGGAACCGTGCCACTCAGTTACTCCTCCCCAGTCCCCACCTAGGAAGGAAG
TTGGGAACGGTACAAACTTACTGTACGAAACCGTACGGCCCCGGCCGGCCGTACCTCGGTCACGCACGCATGATTCGCCT
CGGCGGTTGGTTGGAGCACGCTCCTTTGGCCATGCCACTTTCGCACGCCATTGCCATACCCCCGCCCGCTCGCCCTGCCC
------GTGCAAGGGGTGGCTCCATAGGCGTGATGCCACAGCTAGCA-----GCGGCAGC------GACAGCCAACGAGC
ACGGCGTCACTCCCCTCCCGTGCCTTGCACCGTTGTGCCCCGCTTTCGAATCAGTTGTACCGCCCCTGCATCTGCATGGC
CGCGGGTCCGGCCGGGGCCTTCGCGCGCCACCGGCG----ACAGGGACCCCCCGTGCCG--GCACCCTTTTCTTCCGGTG
GAATTCCACCGCGACACCGATGGATTCCGTCCGTTTTACGGGTGGCTTTCCAACTTGCCGCTCTGTCGTCGTGCCCGTGC
GGATGGATGGATGAATTCCGCGAGGAGTGGACGCGTTGGATTCAGGTCGCCGTCCCGGGGAGGTGCACTTGCGCCACTGG
GCTACGCAAGCCGAGATGGATCCGGGAAATCGCCCGGCTTTG
>chr2B_703
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--------------------------------------------------------------CATGGACCACGCCCGTGC
CCGCCGGAGAACACCAGCCATTACCGAACAAAAACGCCGCCTCGCCACCGAAAACAAGGTAAAATCACGTCAAAAGAA-A
AGAAAAGAAACACGCAAAATCCCAGACAAATACCCCATACGAAATCTTCTCCTGCCAGCCAGTAGGCACAATCCCAGCGC
CGAACGGAGCCAAGAACCTTCCTTTCATCAAAACGAAAAACGACGAGCTGCAGG-----------AAAAAAACACCATGA
AATTTTAGGATCTCAAAAAAGCCGCGCACAGCCC-GCTCTGGTGAGGCTGACGCCTATATAAAACAGTCCACTTCCCCCA
CTAATCACACTCCCTCCGACTTCCGTTACCAGTTCCGTCCGTCTCCTCCCATTTATTAAGGCGAGAGCCCCTCGCTCGCT
CGTCCAG-----GAAAGGAGGCCAAAGGGAGCGCGGGCGGTTCGTTCAGATCCCGGTCTCGCCATGCCGAGGACAAGGAG
GTTGCGCGGCGGATTCCGGCTGGGCCGCAAGCTGCTGACCGCGTGGCGGTGGGCGCTCTGCGGCCGGAGCCGGCGCCGGG
GCG------GCTACCTCCGCCTCGACACGCCGTGCCCGGTGGAGGGCAGGGAGGCCAAGAAGCTGGCGCCGGTGCTGCGG
TGGGGGCAGTCGCTGGCGCGGCTCCTCAGCCTCGGCCGTACGGACCGCGGCCAGCGAACGCTCGGCGGCGGCGGCGGCGA
CGAGGCGGTGAAGACCCCCAAGGGGCAGGTGGCGGTGTACGTCGGCGGTGGCGGGCCCGGGGAGCCGCTGCGGTACGTGG
TGCCGGTGGTGTACTTCAACCACCCCATGTTCGGGGAGCTGCTGAGGGAGGCGGAGGAGGCGTTCGGCTTCCAGCACCCC
GGCGGTATCACCATCCCCTGCGCCGCCGCCAAGTTCGAGCGCGCCGCCGCCGTGGCCGCCGGAGGGAAGAAGGGGTTCGC
CAGGTGGTAGCATCGGGCCCGTAGGCGTAGGAGTC------------CCCCGGCCCTAGCTGGCCTGATCGCCTCCGCTG
CTGCGTGCGGTGGAGGCGAATGGTGACATGGTGTACAGTGCATGTGTGTTTCCATCAGCAAAGGGGCTAATTTTGTTCCA
TTGATTCATCTTCCTGCCGTTT-A-----ACTAGTGGATGGACGCCGTTCTTTTTCTTTTTC------------------
---CTATGGATTGTGG--------ATGCAAGTTCATCTCAGAATCTCTAAAGTTTCATCGTTTGCTGTTGACAAATCTGA
CCCTGACGAACTCCGGCGAGCGAGCGAACCGGGCCGACGAATTTCTCTTACGAACGTTCAATTCAAGACCGGAGGATGGT
AGTATGAACACAAAAGGTTCTATCGGAGTCGATGCTACGGTCTGCAATGGATTTTGCGGCCATCCC-GCCCAGCCTAGAA
ATTTCTCGCGAGCAAAATGCTACTACCTCCGTCTCAGTGAATAAGTCATTTGCGTAGTTCTATCTAAATATGTATTACAT
GCGACAAAAAATATATATTTAGAAACTACATTCGTGTAGAAATCTAGTGATATACTTTTCATGACATATAACACATATTT
AATTGCTTAAATCGATGACCTGAAACTACGCGAATGACTTATTCACCTAGATGGAGGTAGTACCGACGCCATTGAATTCA
TGCTTATCTATCTCTGACTAGGGAGTACGGGGAACCGTGCCACTCAGTTACTACTCC----TCCCCACCGAGGAAGG---
-TGGGAACGGTACAAACTTACTGTACGAAACCGTACGCCCCCGGCCGGCCGTACCTCGGTCACGCACGCATGATTCG---
--GCGGTTGGTTGGAGCACGCTCCTTTGGCCATGCCACTTTTGCACGCCATTGCCACACTCCCCGCTCG-----------
---------------------CCATAGGCGTGATGCCACAGCTAGCATAGCAGCGGCAAC------GACAGCCAACGAGC
ACGGCGTCACTCCGGTCCCGTGCCTTGCACCGTTGTGCCCCGCTTTCGAATCAGTTGTACCGCCCCTGCATCTGCATGGC
CGCGGGTCCGGCCGGGGCCTTGGCGCGCCACCGGCGATAGACAGGGACCGCCCGTGCGCGCGCATCCTTTTC-TCCGGTG
GAATTCCACCGCGACGCCGATGGATTCCGTCCGTTTTACGGGTGGCTTTCCAACTTGCCGCTCTGTCGTCGTGTCCGCGC
A----GATGGATGAATTCCGCGAGGAGTGGACGCGTTGGATTCAGGTCGCCGTCCCGGGGAGGTGCACTTGCGCCACTGG
GCTACGCAAGCCGAGATGGATCCGGGAAATCGCCTGGCTTTG
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S------------------
----------------S----------------------------------------------------------S----
-----S------S------S---------------------S--------S-----------------------------
---S--S-----------------------S---------------------S---------------------------
----------------------------------------------------------------------------S---
-------------S----S-----------S-------------------------------------------------
-------SSSSS--------SS-----SSS--------------------------S-S---------------S-----
-----------------------------------------S--------------------------------------
-S-------------------------------------S-------S----------------------S---------
-------S--------------------------------------------S---------------------------
---------------------------------------------------------------------S----------
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---------------------------------S-SSSSSSSSSSSS--S-------S---------------S--S-S-
----------S---------------------------------------------------------------------
------------------------SSSSS----------------------------SS---------------------
----S-------S-------S-S-----------S-S----------------S-------------------------S
--S-S--S--------S---------------------------------------------------------------
----------------------S------------S------------------------------S-------------
-----S---------SS-SSS-SS--------------------------------------------------------
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-----S-----------S-----------S-SSSSSSS------------------------------------S-----
------------------------------------S-------------------------------------------
SSSSSS----------SS---------------S-------------SSSSSSS-SSSSSSSSSSS--------------
---------------------------------S---S----------------SS-S-------------SSS-SS-SS
---------------------------------------------------S--S-------------------------
----------------S----------------SS-----------------------S---------------------
----------------------S---------------------------------------------------------
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>forward_182
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--TGCGTGTGAATGACGACGTA----------------------------------------------------------
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>reverse_1869
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----------------------------GACTAGTGGATGGATGCGGT--------------------------------
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