Multiple sequence alignment - TraesCS2A01G383200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G383200 chr2A 100.000 2249 0 0 1 2249 627925415 627927663 0.000000e+00 4154
1 TraesCS2A01G383200 chr2A 95.000 320 16 0 1 320 40072205 40072524 9.270000e-139 503
2 TraesCS2A01G383200 chr2D 92.018 877 49 7 509 1370 484071626 484072496 0.000000e+00 1212
3 TraesCS2A01G383200 chr2D 90.345 870 42 17 1389 2240 484072561 484073406 0.000000e+00 1103
4 TraesCS2A01G383200 chr2D 86.833 281 26 6 516 788 484047978 484048255 1.010000e-78 303
5 TraesCS2A01G383200 chr2B 93.470 827 21 9 1388 2199 568745311 568746119 0.000000e+00 1197
6 TraesCS2A01G383200 chr2B 90.179 896 56 20 516 1388 568744384 568745270 0.000000e+00 1138
7 TraesCS2A01G383200 chr2B 94.062 320 19 0 1 320 632903587 632903906 9.340000e-134 486
8 TraesCS2A01G383200 chr2B 81.962 316 35 9 344 638 657477006 657476692 4.800000e-62 248
9 TraesCS2A01G383200 chr4A 96.285 323 11 1 1 323 617496746 617496425 1.530000e-146 529
10 TraesCS2A01G383200 chr4A 91.346 312 27 0 9 320 100614604 100614293 5.740000e-116 427
11 TraesCS2A01G383200 chr3B 94.322 317 18 0 1 317 581125933 581126249 9.340000e-134 486
12 TraesCS2A01G383200 chr3B 84.177 316 27 10 344 638 101922362 101922675 3.660000e-73 285
13 TraesCS2A01G383200 chr7A 94.062 320 17 1 1 320 546584260 546583943 3.360000e-133 484
14 TraesCS2A01G383200 chr5A 90.909 319 29 0 1 319 602975793 602975475 1.600000e-116 429
15 TraesCS2A01G383200 chr1B 89.274 317 34 0 1 317 37785852 37785536 4.500000e-107 398
16 TraesCS2A01G383200 chr3A 88.125 320 37 1 1 320 691444387 691444705 1.630000e-101 379
17 TraesCS2A01G383200 chr3D 82.071 396 31 13 344 700 598875488 598875094 3.630000e-78 302
18 TraesCS2A01G383200 chr5D 81.566 396 33 13 344 700 483806900 483807294 7.860000e-75 291
19 TraesCS2A01G383200 chr5D 81.313 396 34 13 344 700 503283984 503283590 3.660000e-73 285
20 TraesCS2A01G383200 chr6D 83.534 249 19 9 410 638 104452608 104452362 1.750000e-51 213
21 TraesCS2A01G383200 chr6A 84.524 168 21 3 356 519 117416546 117416712 6.430000e-36 161
22 TraesCS2A01G383200 chr7D 82.741 197 14 6 523 700 104559030 104558835 8.320000e-35 158
23 TraesCS2A01G383200 chr7B 82.759 116 17 2 1078 1190 428491951 428491836 1.420000e-17 100


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G383200 chr2A 627925415 627927663 2248 False 4154.0 4154 100.0000 1 2249 1 chr2A.!!$F2 2248
1 TraesCS2A01G383200 chr2D 484071626 484073406 1780 False 1157.5 1212 91.1815 509 2240 2 chr2D.!!$F2 1731
2 TraesCS2A01G383200 chr2B 568744384 568746119 1735 False 1167.5 1197 91.8245 516 2199 2 chr2B.!!$F2 1683

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
41 42 0.032267 CGGCGTCCTCCTTAAGATCC 59.968 60.0 3.36 0.0 0.0 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1470 1551 1.147473 TGCAGAACACGTGCATACAG 58.853 50.0 17.22 2.09 45.96 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.760047 CGCTGCGTAGGCTTGGGT 62.760 66.667 14.93 0.00 40.82 4.51
18 19 2.820037 GCTGCGTAGGCTTGGGTC 60.820 66.667 9.11 0.00 40.82 4.46
19 20 2.125106 CTGCGTAGGCTTGGGTCC 60.125 66.667 9.11 0.00 40.82 4.46
20 21 4.077184 TGCGTAGGCTTGGGTCCG 62.077 66.667 9.11 0.00 40.82 4.79
21 22 4.078516 GCGTAGGCTTGGGTCCGT 62.079 66.667 0.00 0.00 35.83 4.69
22 23 2.183555 CGTAGGCTTGGGTCCGTC 59.816 66.667 0.00 0.00 0.00 4.79
23 24 2.183555 GTAGGCTTGGGTCCGTCG 59.816 66.667 0.00 0.00 0.00 5.12
24 25 3.072468 TAGGCTTGGGTCCGTCGG 61.072 66.667 4.39 4.39 0.00 4.79
35 36 3.136123 CCGTCGGCGTCCTCCTTA 61.136 66.667 9.28 0.00 36.15 2.69
36 37 2.703798 CCGTCGGCGTCCTCCTTAA 61.704 63.158 9.28 0.00 36.15 1.85
37 38 1.226603 CGTCGGCGTCCTCCTTAAG 60.227 63.158 6.85 0.00 0.00 1.85
38 39 1.651240 CGTCGGCGTCCTCCTTAAGA 61.651 60.000 6.85 0.00 0.00 2.10
39 40 0.745468 GTCGGCGTCCTCCTTAAGAT 59.255 55.000 6.85 0.00 0.00 2.40
40 41 1.030457 TCGGCGTCCTCCTTAAGATC 58.970 55.000 6.85 0.00 0.00 2.75
41 42 0.032267 CGGCGTCCTCCTTAAGATCC 59.968 60.000 3.36 0.00 0.00 3.36
42 43 1.120530 GGCGTCCTCCTTAAGATCCA 58.879 55.000 3.36 0.00 0.00 3.41
43 44 1.202545 GGCGTCCTCCTTAAGATCCAC 60.203 57.143 3.36 0.00 0.00 4.02
44 45 1.757699 GCGTCCTCCTTAAGATCCACT 59.242 52.381 3.36 0.00 0.00 4.00
45 46 2.957006 GCGTCCTCCTTAAGATCCACTA 59.043 50.000 3.36 0.00 0.00 2.74
46 47 3.243468 GCGTCCTCCTTAAGATCCACTAC 60.243 52.174 3.36 0.00 0.00 2.73
47 48 3.952323 CGTCCTCCTTAAGATCCACTACA 59.048 47.826 3.36 0.00 0.00 2.74
48 49 4.585162 CGTCCTCCTTAAGATCCACTACAT 59.415 45.833 3.36 0.00 0.00 2.29
49 50 5.278561 CGTCCTCCTTAAGATCCACTACATC 60.279 48.000 3.36 0.00 0.00 3.06
50 51 5.598830 GTCCTCCTTAAGATCCACTACATCA 59.401 44.000 3.36 0.00 0.00 3.07
51 52 6.098409 GTCCTCCTTAAGATCCACTACATCAA 59.902 42.308 3.36 0.00 0.00 2.57
52 53 6.325028 TCCTCCTTAAGATCCACTACATCAAG 59.675 42.308 3.36 0.00 0.00 3.02
53 54 6.098982 CCTCCTTAAGATCCACTACATCAAGT 59.901 42.308 3.36 0.00 0.00 3.16
54 55 7.365117 CCTCCTTAAGATCCACTACATCAAGTT 60.365 40.741 3.36 0.00 0.00 2.66
55 56 7.331026 TCCTTAAGATCCACTACATCAAGTTG 58.669 38.462 3.36 0.00 0.00 3.16
56 57 7.180229 TCCTTAAGATCCACTACATCAAGTTGA 59.820 37.037 8.27 8.27 0.00 3.18
57 58 7.989741 CCTTAAGATCCACTACATCAAGTTGAT 59.010 37.037 12.75 12.75 37.65 2.57
58 59 8.948631 TTAAGATCCACTACATCAAGTTGATC 57.051 34.615 15.60 9.06 43.76 2.92
59 60 5.595885 AGATCCACTACATCAAGTTGATCG 58.404 41.667 15.60 13.10 46.06 3.69
60 61 4.801330 TCCACTACATCAAGTTGATCGT 57.199 40.909 15.60 17.45 34.28 3.73
61 62 4.744570 TCCACTACATCAAGTTGATCGTC 58.255 43.478 15.60 0.00 34.28 4.20
62 63 3.547868 CCACTACATCAAGTTGATCGTCG 59.452 47.826 15.60 14.23 34.28 5.12
63 64 3.000674 CACTACATCAAGTTGATCGTCGC 60.001 47.826 15.60 0.00 34.28 5.19
64 65 2.078849 ACATCAAGTTGATCGTCGCA 57.921 45.000 15.60 0.00 34.28 5.10
65 66 2.412870 ACATCAAGTTGATCGTCGCAA 58.587 42.857 15.60 0.00 34.28 4.85
66 67 3.002791 ACATCAAGTTGATCGTCGCAAT 58.997 40.909 15.60 0.00 34.28 3.56
67 68 3.062639 ACATCAAGTTGATCGTCGCAATC 59.937 43.478 15.60 0.00 34.28 2.67
68 69 1.999735 TCAAGTTGATCGTCGCAATCC 59.000 47.619 0.08 0.00 0.00 3.01
69 70 1.731709 CAAGTTGATCGTCGCAATCCA 59.268 47.619 0.00 0.00 0.00 3.41
70 71 2.315925 AGTTGATCGTCGCAATCCAT 57.684 45.000 0.00 0.00 0.00 3.41
71 72 1.935873 AGTTGATCGTCGCAATCCATG 59.064 47.619 0.00 0.00 0.00 3.66
72 73 1.003545 GTTGATCGTCGCAATCCATGG 60.004 52.381 4.97 4.97 0.00 3.66
73 74 0.532640 TGATCGTCGCAATCCATGGG 60.533 55.000 13.02 0.00 43.06 4.00
74 75 0.532862 GATCGTCGCAATCCATGGGT 60.533 55.000 13.02 0.00 42.35 4.51
75 76 0.815213 ATCGTCGCAATCCATGGGTG 60.815 55.000 13.02 11.80 42.35 4.61
76 77 2.800736 GTCGCAATCCATGGGTGC 59.199 61.111 23.93 23.93 42.35 5.01
77 78 2.440065 TCGCAATCCATGGGTGCC 60.440 61.111 26.22 14.31 42.35 5.01
78 79 2.440796 CGCAATCCATGGGTGCCT 60.441 61.111 26.22 0.00 37.22 4.75
79 80 2.777972 CGCAATCCATGGGTGCCTG 61.778 63.158 26.22 12.16 37.22 4.85
80 81 3.085119 GCAATCCATGGGTGCCTGC 62.085 63.158 23.54 15.48 31.94 4.85
81 82 1.683025 CAATCCATGGGTGCCTGCA 60.683 57.895 13.02 0.00 0.00 4.41
82 83 1.683365 AATCCATGGGTGCCTGCAC 60.683 57.895 13.02 13.75 45.49 4.57
90 91 3.826221 GTGCCTGCACACACTCAA 58.174 55.556 16.95 0.00 45.53 3.02
91 92 1.650912 GTGCCTGCACACACTCAAG 59.349 57.895 16.95 0.00 45.53 3.02
92 93 0.815213 GTGCCTGCACACACTCAAGA 60.815 55.000 16.95 0.00 45.53 3.02
93 94 0.107263 TGCCTGCACACACTCAAGAA 60.107 50.000 0.00 0.00 0.00 2.52
94 95 0.308993 GCCTGCACACACTCAAGAAC 59.691 55.000 0.00 0.00 0.00 3.01
95 96 0.947244 CCTGCACACACTCAAGAACC 59.053 55.000 0.00 0.00 0.00 3.62
96 97 1.475751 CCTGCACACACTCAAGAACCT 60.476 52.381 0.00 0.00 0.00 3.50
97 98 1.869767 CTGCACACACTCAAGAACCTC 59.130 52.381 0.00 0.00 0.00 3.85
98 99 0.861837 GCACACACTCAAGAACCTCG 59.138 55.000 0.00 0.00 0.00 4.63
99 100 1.538204 GCACACACTCAAGAACCTCGA 60.538 52.381 0.00 0.00 0.00 4.04
100 101 2.868044 GCACACACTCAAGAACCTCGAT 60.868 50.000 0.00 0.00 0.00 3.59
101 102 3.614150 GCACACACTCAAGAACCTCGATA 60.614 47.826 0.00 0.00 0.00 2.92
102 103 4.748892 CACACACTCAAGAACCTCGATAT 58.251 43.478 0.00 0.00 0.00 1.63
103 104 4.564372 CACACACTCAAGAACCTCGATATG 59.436 45.833 0.00 0.00 0.00 1.78
104 105 4.462834 ACACACTCAAGAACCTCGATATGA 59.537 41.667 0.00 0.00 0.00 2.15
105 106 5.047306 ACACACTCAAGAACCTCGATATGAA 60.047 40.000 0.00 0.00 0.00 2.57
106 107 5.869344 CACACTCAAGAACCTCGATATGAAA 59.131 40.000 0.00 0.00 0.00 2.69
107 108 6.368791 CACACTCAAGAACCTCGATATGAAAA 59.631 38.462 0.00 0.00 0.00 2.29
108 109 6.934645 ACACTCAAGAACCTCGATATGAAAAA 59.065 34.615 0.00 0.00 0.00 1.94
135 136 9.825972 AATTGATTATTAAATGCTTACCGATCG 57.174 29.630 8.51 8.51 0.00 3.69
136 137 6.827641 TGATTATTAAATGCTTACCGATCGC 58.172 36.000 10.32 0.00 0.00 4.58
137 138 6.425417 TGATTATTAAATGCTTACCGATCGCA 59.575 34.615 10.32 1.58 38.14 5.10
138 139 6.606234 TTATTAAATGCTTACCGATCGCAA 57.394 33.333 10.32 4.89 37.20 4.85
139 140 4.530094 TTAAATGCTTACCGATCGCAAG 57.470 40.909 10.32 15.42 37.20 4.01
140 141 0.657840 AATGCTTACCGATCGCAAGC 59.342 50.000 30.40 30.40 43.92 4.01
141 142 0.179073 ATGCTTACCGATCGCAAGCT 60.179 50.000 33.50 23.55 43.98 3.74
142 143 0.806102 TGCTTACCGATCGCAAGCTC 60.806 55.000 33.50 18.59 43.98 4.09
143 144 0.528684 GCTTACCGATCGCAAGCTCT 60.529 55.000 30.07 5.62 41.14 4.09
144 145 1.927895 CTTACCGATCGCAAGCTCTT 58.072 50.000 10.32 0.00 37.18 2.85
145 146 1.855360 CTTACCGATCGCAAGCTCTTC 59.145 52.381 10.32 0.00 37.18 2.87
146 147 0.815095 TACCGATCGCAAGCTCTTCA 59.185 50.000 10.32 0.00 37.18 3.02
147 148 0.176680 ACCGATCGCAAGCTCTTCAT 59.823 50.000 10.32 0.00 37.18 2.57
148 149 0.857935 CCGATCGCAAGCTCTTCATC 59.142 55.000 10.32 0.00 37.18 2.92
149 150 1.564207 CGATCGCAAGCTCTTCATCA 58.436 50.000 0.26 0.00 37.18 3.07
150 151 1.929169 CGATCGCAAGCTCTTCATCAA 59.071 47.619 0.26 0.00 37.18 2.57
151 152 2.285486 CGATCGCAAGCTCTTCATCAAC 60.285 50.000 0.26 0.00 37.18 3.18
152 153 1.070821 TCGCAAGCTCTTCATCAACG 58.929 50.000 0.00 0.00 37.18 4.10
153 154 0.792640 CGCAAGCTCTTCATCAACGT 59.207 50.000 0.00 0.00 0.00 3.99
154 155 1.195448 CGCAAGCTCTTCATCAACGTT 59.805 47.619 0.00 0.00 0.00 3.99
155 156 2.578495 GCAAGCTCTTCATCAACGTTG 58.422 47.619 22.35 22.35 0.00 4.10
156 157 2.224079 GCAAGCTCTTCATCAACGTTGA 59.776 45.455 31.41 31.41 42.14 3.18
157 158 3.666374 GCAAGCTCTTCATCAACGTTGAG 60.666 47.826 32.19 23.68 41.08 3.02
158 159 3.667497 AGCTCTTCATCAACGTTGAGA 57.333 42.857 32.19 25.24 41.08 3.27
159 160 4.199432 AGCTCTTCATCAACGTTGAGAT 57.801 40.909 32.19 16.93 41.08 2.75
160 161 3.931468 AGCTCTTCATCAACGTTGAGATG 59.069 43.478 32.19 26.18 41.08 2.90
161 162 3.681897 GCTCTTCATCAACGTTGAGATGT 59.318 43.478 32.19 15.85 41.74 3.06
162 163 4.201666 GCTCTTCATCAACGTTGAGATGTC 60.202 45.833 32.19 20.45 41.74 3.06
163 164 3.920412 TCTTCATCAACGTTGAGATGTCG 59.080 43.478 32.19 20.66 41.74 4.35
164 165 3.297830 TCATCAACGTTGAGATGTCGT 57.702 42.857 32.19 14.06 41.74 4.34
165 166 3.242518 TCATCAACGTTGAGATGTCGTC 58.757 45.455 32.19 0.00 41.74 4.20
166 167 2.060326 TCAACGTTGAGATGTCGTCC 57.940 50.000 26.53 0.00 36.80 4.79
167 168 0.708370 CAACGTTGAGATGTCGTCCG 59.292 55.000 23.90 0.00 36.80 4.79
168 169 0.388134 AACGTTGAGATGTCGTCCGG 60.388 55.000 0.00 0.00 36.80 5.14
169 170 2.158959 CGTTGAGATGTCGTCCGGC 61.159 63.158 0.00 0.00 0.00 6.13
170 171 1.810030 GTTGAGATGTCGTCCGGCC 60.810 63.158 0.00 0.00 0.00 6.13
171 172 2.279810 TTGAGATGTCGTCCGGCCA 61.280 57.895 2.24 0.00 0.00 5.36
172 173 1.822114 TTGAGATGTCGTCCGGCCAA 61.822 55.000 2.24 0.00 0.00 4.52
173 174 1.079405 GAGATGTCGTCCGGCCAAA 60.079 57.895 2.24 0.00 0.00 3.28
174 175 0.672401 GAGATGTCGTCCGGCCAAAA 60.672 55.000 2.24 0.00 0.00 2.44
175 176 0.035439 AGATGTCGTCCGGCCAAAAT 60.035 50.000 2.24 0.00 0.00 1.82
176 177 1.208535 AGATGTCGTCCGGCCAAAATA 59.791 47.619 2.24 0.00 0.00 1.40
177 178 2.158813 AGATGTCGTCCGGCCAAAATAT 60.159 45.455 2.24 0.00 0.00 1.28
178 179 1.658994 TGTCGTCCGGCCAAAATATC 58.341 50.000 2.24 0.00 0.00 1.63
179 180 1.208535 TGTCGTCCGGCCAAAATATCT 59.791 47.619 2.24 0.00 0.00 1.98
180 181 1.865340 GTCGTCCGGCCAAAATATCTC 59.135 52.381 2.24 0.00 0.00 2.75
181 182 1.202604 TCGTCCGGCCAAAATATCTCC 60.203 52.381 2.24 0.00 0.00 3.71
182 183 1.474320 CGTCCGGCCAAAATATCTCCA 60.474 52.381 2.24 0.00 0.00 3.86
183 184 2.810400 CGTCCGGCCAAAATATCTCCAT 60.810 50.000 2.24 0.00 0.00 3.41
184 185 2.814336 GTCCGGCCAAAATATCTCCATC 59.186 50.000 2.24 0.00 0.00 3.51
185 186 2.711009 TCCGGCCAAAATATCTCCATCT 59.289 45.455 2.24 0.00 0.00 2.90
186 187 3.138283 TCCGGCCAAAATATCTCCATCTT 59.862 43.478 2.24 0.00 0.00 2.40
187 188 3.503748 CCGGCCAAAATATCTCCATCTTC 59.496 47.826 2.24 0.00 0.00 2.87
188 189 3.187227 CGGCCAAAATATCTCCATCTTCG 59.813 47.826 2.24 0.00 0.00 3.79
189 190 4.137543 GGCCAAAATATCTCCATCTTCGT 58.862 43.478 0.00 0.00 0.00 3.85
190 191 4.214332 GGCCAAAATATCTCCATCTTCGTC 59.786 45.833 0.00 0.00 0.00 4.20
191 192 4.214332 GCCAAAATATCTCCATCTTCGTCC 59.786 45.833 0.00 0.00 0.00 4.79
192 193 4.757149 CCAAAATATCTCCATCTTCGTCCC 59.243 45.833 0.00 0.00 0.00 4.46
193 194 3.944055 AATATCTCCATCTTCGTCCCG 57.056 47.619 0.00 0.00 0.00 5.14
194 195 1.617322 TATCTCCATCTTCGTCCCGG 58.383 55.000 0.00 0.00 0.00 5.73
195 196 0.106167 ATCTCCATCTTCGTCCCGGA 60.106 55.000 0.73 0.00 0.00 5.14
196 197 0.106167 TCTCCATCTTCGTCCCGGAT 60.106 55.000 0.73 0.00 0.00 4.18
197 198 0.315568 CTCCATCTTCGTCCCGGATC 59.684 60.000 0.73 0.00 0.00 3.36
198 199 0.396556 TCCATCTTCGTCCCGGATCA 60.397 55.000 0.73 0.00 0.00 2.92
199 200 0.681733 CCATCTTCGTCCCGGATCAT 59.318 55.000 0.73 0.00 0.00 2.45
200 201 1.337260 CCATCTTCGTCCCGGATCATC 60.337 57.143 0.73 0.00 0.00 2.92
201 202 1.341209 CATCTTCGTCCCGGATCATCA 59.659 52.381 0.73 0.00 0.00 3.07
202 203 1.704641 TCTTCGTCCCGGATCATCAT 58.295 50.000 0.73 0.00 0.00 2.45
203 204 1.613925 TCTTCGTCCCGGATCATCATC 59.386 52.381 0.73 0.00 0.00 2.92
204 205 0.679505 TTCGTCCCGGATCATCATCC 59.320 55.000 0.73 0.00 45.04 3.51
214 215 2.398498 GATCATCATCCAACGAGACGG 58.602 52.381 0.00 0.00 0.00 4.79
215 216 1.470051 TCATCATCCAACGAGACGGA 58.530 50.000 0.00 0.00 35.27 4.69
216 217 2.031870 TCATCATCCAACGAGACGGAT 58.968 47.619 0.00 0.00 42.96 4.18
218 219 4.835927 ATCCAACGAGACGGATGC 57.164 55.556 0.00 0.00 40.60 3.91
219 220 1.226974 ATCCAACGAGACGGATGCG 60.227 57.895 4.58 4.58 40.60 4.73
220 221 1.663379 ATCCAACGAGACGGATGCGA 61.663 55.000 15.49 0.00 40.60 5.10
221 222 1.874019 CCAACGAGACGGATGCGAG 60.874 63.158 15.49 4.13 0.00 5.03
222 223 1.154016 CAACGAGACGGATGCGAGT 60.154 57.895 15.49 4.80 0.00 4.18
223 224 0.098200 CAACGAGACGGATGCGAGTA 59.902 55.000 15.49 0.00 0.00 2.59
224 225 0.377554 AACGAGACGGATGCGAGTAG 59.622 55.000 15.49 4.50 0.00 2.57
225 226 0.461516 ACGAGACGGATGCGAGTAGA 60.462 55.000 15.49 0.00 0.00 2.59
226 227 0.869068 CGAGACGGATGCGAGTAGAT 59.131 55.000 15.49 0.00 0.00 1.98
227 228 1.136197 CGAGACGGATGCGAGTAGATC 60.136 57.143 15.49 0.00 0.00 2.75
228 229 1.874231 GAGACGGATGCGAGTAGATCA 59.126 52.381 15.49 0.00 0.00 2.92
229 230 2.290916 GAGACGGATGCGAGTAGATCAA 59.709 50.000 15.49 0.00 0.00 2.57
230 231 2.292016 AGACGGATGCGAGTAGATCAAG 59.708 50.000 15.49 0.00 0.00 3.02
231 232 1.269309 ACGGATGCGAGTAGATCAAGC 60.269 52.381 15.49 0.00 0.00 4.01
232 233 1.789506 GGATGCGAGTAGATCAAGCC 58.210 55.000 0.00 0.00 0.00 4.35
233 234 1.069204 GGATGCGAGTAGATCAAGCCA 59.931 52.381 0.00 0.00 0.00 4.75
234 235 2.289320 GGATGCGAGTAGATCAAGCCAT 60.289 50.000 0.00 0.00 0.00 4.40
235 236 2.988010 TGCGAGTAGATCAAGCCATT 57.012 45.000 0.00 0.00 0.00 3.16
236 237 2.554142 TGCGAGTAGATCAAGCCATTG 58.446 47.619 0.00 0.00 37.80 2.82
245 246 1.311859 TCAAGCCATTGATCCATCGC 58.688 50.000 0.00 0.00 40.54 4.58
246 247 0.313043 CAAGCCATTGATCCATCGCC 59.687 55.000 0.00 0.00 38.83 5.54
247 248 0.825010 AAGCCATTGATCCATCGCCC 60.825 55.000 0.00 0.00 0.00 6.13
248 249 2.270986 GCCATTGATCCATCGCCCC 61.271 63.158 0.00 0.00 0.00 5.80
249 250 1.968017 CCATTGATCCATCGCCCCG 60.968 63.158 0.00 0.00 0.00 5.73
250 251 2.281761 ATTGATCCATCGCCCCGC 60.282 61.111 0.00 0.00 0.00 6.13
251 252 3.850098 ATTGATCCATCGCCCCGCC 62.850 63.158 0.00 0.00 0.00 6.13
253 254 4.688966 GATCCATCGCCCCGCCTC 62.689 72.222 0.00 0.00 0.00 4.70
258 259 4.640690 ATCGCCCCGCCTCCCTAT 62.641 66.667 0.00 0.00 0.00 2.57
261 262 2.930562 GCCCCGCCTCCCTATCAT 60.931 66.667 0.00 0.00 0.00 2.45
262 263 2.960688 GCCCCGCCTCCCTATCATC 61.961 68.421 0.00 0.00 0.00 2.92
263 264 1.229336 CCCCGCCTCCCTATCATCT 60.229 63.158 0.00 0.00 0.00 2.90
264 265 0.838122 CCCCGCCTCCCTATCATCTT 60.838 60.000 0.00 0.00 0.00 2.40
265 266 0.322975 CCCGCCTCCCTATCATCTTG 59.677 60.000 0.00 0.00 0.00 3.02
266 267 1.342074 CCGCCTCCCTATCATCTTGA 58.658 55.000 0.00 0.00 0.00 3.02
267 268 1.694150 CCGCCTCCCTATCATCTTGAA 59.306 52.381 0.00 0.00 0.00 2.69
268 269 2.104792 CCGCCTCCCTATCATCTTGAAA 59.895 50.000 0.00 0.00 0.00 2.69
269 270 3.433598 CCGCCTCCCTATCATCTTGAAAA 60.434 47.826 0.00 0.00 0.00 2.29
270 271 3.561725 CGCCTCCCTATCATCTTGAAAAC 59.438 47.826 0.00 0.00 0.00 2.43
271 272 3.561725 GCCTCCCTATCATCTTGAAAACG 59.438 47.826 0.00 0.00 0.00 3.60
272 273 3.561725 CCTCCCTATCATCTTGAAAACGC 59.438 47.826 0.00 0.00 0.00 4.84
273 274 4.191544 CTCCCTATCATCTTGAAAACGCA 58.808 43.478 0.00 0.00 0.00 5.24
274 275 3.938963 TCCCTATCATCTTGAAAACGCAC 59.061 43.478 0.00 0.00 0.00 5.34
275 276 3.689161 CCCTATCATCTTGAAAACGCACA 59.311 43.478 0.00 0.00 0.00 4.57
276 277 4.336433 CCCTATCATCTTGAAAACGCACAT 59.664 41.667 0.00 0.00 0.00 3.21
277 278 5.527214 CCCTATCATCTTGAAAACGCACATA 59.473 40.000 0.00 0.00 0.00 2.29
278 279 6.422223 CCTATCATCTTGAAAACGCACATAC 58.578 40.000 0.00 0.00 0.00 2.39
279 280 4.678509 TCATCTTGAAAACGCACATACC 57.321 40.909 0.00 0.00 0.00 2.73
280 281 4.068599 TCATCTTGAAAACGCACATACCA 58.931 39.130 0.00 0.00 0.00 3.25
281 282 4.699735 TCATCTTGAAAACGCACATACCAT 59.300 37.500 0.00 0.00 0.00 3.55
282 283 5.182950 TCATCTTGAAAACGCACATACCATT 59.817 36.000 0.00 0.00 0.00 3.16
283 284 5.446143 TCTTGAAAACGCACATACCATTT 57.554 34.783 0.00 0.00 0.00 2.32
284 285 5.457140 TCTTGAAAACGCACATACCATTTC 58.543 37.500 0.00 0.00 0.00 2.17
285 286 4.837896 TGAAAACGCACATACCATTTCA 57.162 36.364 0.00 0.00 35.20 2.69
286 287 5.384063 TGAAAACGCACATACCATTTCAT 57.616 34.783 0.00 0.00 33.32 2.57
287 288 6.502136 TGAAAACGCACATACCATTTCATA 57.498 33.333 0.00 0.00 33.32 2.15
288 289 6.550843 TGAAAACGCACATACCATTTCATAG 58.449 36.000 0.00 0.00 33.32 2.23
289 290 5.499139 AAACGCACATACCATTTCATAGG 57.501 39.130 0.00 0.00 0.00 2.57
290 291 4.415881 ACGCACATACCATTTCATAGGA 57.584 40.909 0.00 0.00 0.00 2.94
291 292 4.973168 ACGCACATACCATTTCATAGGAT 58.027 39.130 0.00 0.00 0.00 3.24
292 293 4.756642 ACGCACATACCATTTCATAGGATG 59.243 41.667 0.00 0.00 0.00 3.51
293 294 4.378770 CGCACATACCATTTCATAGGATGC 60.379 45.833 0.00 0.00 0.00 3.91
294 295 4.520111 GCACATACCATTTCATAGGATGCA 59.480 41.667 0.00 0.00 0.00 3.96
295 296 5.009911 GCACATACCATTTCATAGGATGCAA 59.990 40.000 0.00 0.00 0.00 4.08
296 297 6.461370 GCACATACCATTTCATAGGATGCAAA 60.461 38.462 0.00 0.00 0.00 3.68
297 298 7.490840 CACATACCATTTCATAGGATGCAAAA 58.509 34.615 0.00 0.00 0.00 2.44
298 299 7.980662 CACATACCATTTCATAGGATGCAAAAA 59.019 33.333 0.00 0.00 0.00 1.94
299 300 8.199449 ACATACCATTTCATAGGATGCAAAAAG 58.801 33.333 0.00 0.00 0.00 2.27
300 301 6.610075 ACCATTTCATAGGATGCAAAAAGT 57.390 33.333 0.00 0.00 0.00 2.66
301 302 7.008021 ACCATTTCATAGGATGCAAAAAGTT 57.992 32.000 0.00 0.00 0.00 2.66
302 303 7.099120 ACCATTTCATAGGATGCAAAAAGTTC 58.901 34.615 0.00 0.00 0.00 3.01
303 304 6.536224 CCATTTCATAGGATGCAAAAAGTTCC 59.464 38.462 0.00 0.00 0.00 3.62
304 305 6.662865 TTTCATAGGATGCAAAAAGTTCCA 57.337 33.333 4.66 0.00 0.00 3.53
305 306 6.662865 TTCATAGGATGCAAAAAGTTCCAA 57.337 33.333 4.66 0.00 0.00 3.53
306 307 6.855763 TCATAGGATGCAAAAAGTTCCAAT 57.144 33.333 4.66 0.00 0.00 3.16
307 308 6.866480 TCATAGGATGCAAAAAGTTCCAATC 58.134 36.000 4.66 0.00 0.00 2.67
308 309 4.541973 AGGATGCAAAAAGTTCCAATCC 57.458 40.909 4.66 0.00 0.00 3.01
309 310 3.261643 AGGATGCAAAAAGTTCCAATCCC 59.738 43.478 4.66 0.00 0.00 3.85
310 311 2.810439 TGCAAAAAGTTCCAATCCCG 57.190 45.000 0.00 0.00 0.00 5.14
311 312 2.311463 TGCAAAAAGTTCCAATCCCGA 58.689 42.857 0.00 0.00 0.00 5.14
312 313 2.896685 TGCAAAAAGTTCCAATCCCGAT 59.103 40.909 0.00 0.00 0.00 4.18
313 314 3.056891 TGCAAAAAGTTCCAATCCCGATC 60.057 43.478 0.00 0.00 0.00 3.69
314 315 3.676049 GCAAAAAGTTCCAATCCCGATCC 60.676 47.826 0.00 0.00 0.00 3.36
315 316 2.038387 AAAGTTCCAATCCCGATCCG 57.962 50.000 0.00 0.00 0.00 4.18
316 317 0.463833 AAGTTCCAATCCCGATCCGC 60.464 55.000 0.00 0.00 0.00 5.54
317 318 1.892391 GTTCCAATCCCGATCCGCC 60.892 63.158 0.00 0.00 0.00 6.13
318 319 3.454587 TTCCAATCCCGATCCGCCG 62.455 63.158 0.00 0.00 0.00 6.46
319 320 4.235762 CCAATCCCGATCCGCCGT 62.236 66.667 0.00 0.00 0.00 5.68
320 321 2.732016 CAATCCCGATCCGCCGTA 59.268 61.111 0.00 0.00 0.00 4.02
321 322 1.292223 CAATCCCGATCCGCCGTAT 59.708 57.895 0.00 0.00 0.00 3.06
322 323 1.014044 CAATCCCGATCCGCCGTATG 61.014 60.000 0.00 0.00 0.00 2.39
323 324 1.469335 AATCCCGATCCGCCGTATGT 61.469 55.000 0.00 0.00 0.00 2.29
324 325 0.609957 ATCCCGATCCGCCGTATGTA 60.610 55.000 0.00 0.00 0.00 2.29
325 326 0.609957 TCCCGATCCGCCGTATGTAT 60.610 55.000 0.00 0.00 0.00 2.29
326 327 0.179145 CCCGATCCGCCGTATGTATC 60.179 60.000 0.00 0.00 0.00 2.24
327 328 0.524414 CCGATCCGCCGTATGTATCA 59.476 55.000 0.00 0.00 0.00 2.15
328 329 1.134367 CCGATCCGCCGTATGTATCAT 59.866 52.381 0.00 0.00 0.00 2.45
329 330 2.451132 CGATCCGCCGTATGTATCATC 58.549 52.381 0.00 0.00 0.00 2.92
330 331 2.159435 CGATCCGCCGTATGTATCATCA 60.159 50.000 0.00 0.00 0.00 3.07
331 332 3.489229 CGATCCGCCGTATGTATCATCAT 60.489 47.826 0.00 0.00 0.00 2.45
332 333 3.953712 TCCGCCGTATGTATCATCATT 57.046 42.857 0.00 0.00 0.00 2.57
333 334 3.845178 TCCGCCGTATGTATCATCATTC 58.155 45.455 0.00 0.00 0.00 2.67
334 335 2.930040 CCGCCGTATGTATCATCATTCC 59.070 50.000 0.00 0.00 0.00 3.01
335 336 3.584834 CGCCGTATGTATCATCATTCCA 58.415 45.455 0.00 0.00 0.00 3.53
336 337 4.183865 CGCCGTATGTATCATCATTCCAT 58.816 43.478 0.00 0.00 0.00 3.41
337 338 5.348164 CGCCGTATGTATCATCATTCCATA 58.652 41.667 0.00 0.00 0.00 2.74
338 339 5.810074 CGCCGTATGTATCATCATTCCATAA 59.190 40.000 0.00 0.00 0.00 1.90
339 340 6.312672 CGCCGTATGTATCATCATTCCATAAA 59.687 38.462 0.00 0.00 0.00 1.40
340 341 7.464358 GCCGTATGTATCATCATTCCATAAAC 58.536 38.462 0.00 0.00 0.00 2.01
341 342 7.674008 GCCGTATGTATCATCATTCCATAAACG 60.674 40.741 0.00 0.00 0.00 3.60
342 343 7.544217 CCGTATGTATCATCATTCCATAAACGA 59.456 37.037 0.00 0.00 0.00 3.85
343 344 9.087424 CGTATGTATCATCATTCCATAAACGAT 57.913 33.333 0.00 0.00 0.00 3.73
346 347 8.763049 TGTATCATCATTCCATAAACGATCTC 57.237 34.615 0.00 0.00 0.00 2.75
347 348 7.819415 TGTATCATCATTCCATAAACGATCTCC 59.181 37.037 0.00 0.00 0.00 3.71
348 349 5.551233 TCATCATTCCATAAACGATCTCCC 58.449 41.667 0.00 0.00 0.00 4.30
349 350 5.307976 TCATCATTCCATAAACGATCTCCCT 59.692 40.000 0.00 0.00 0.00 4.20
350 351 4.960938 TCATTCCATAAACGATCTCCCTG 58.039 43.478 0.00 0.00 0.00 4.45
351 352 4.653801 TCATTCCATAAACGATCTCCCTGA 59.346 41.667 0.00 0.00 0.00 3.86
352 353 5.307976 TCATTCCATAAACGATCTCCCTGAT 59.692 40.000 0.00 0.00 38.27 2.90
353 354 5.630415 TTCCATAAACGATCTCCCTGATT 57.370 39.130 0.00 0.00 35.14 2.57
354 355 5.215252 TCCATAAACGATCTCCCTGATTC 57.785 43.478 0.00 0.00 35.14 2.52
355 356 4.653801 TCCATAAACGATCTCCCTGATTCA 59.346 41.667 0.00 0.00 35.14 2.57
356 357 5.307976 TCCATAAACGATCTCCCTGATTCAT 59.692 40.000 0.00 0.00 35.14 2.57
357 358 5.410746 CCATAAACGATCTCCCTGATTCATG 59.589 44.000 0.00 0.00 35.14 3.07
358 359 4.494091 AAACGATCTCCCTGATTCATGT 57.506 40.909 0.00 0.00 35.14 3.21
359 360 5.614324 AAACGATCTCCCTGATTCATGTA 57.386 39.130 0.00 0.00 35.14 2.29
360 361 4.862902 ACGATCTCCCTGATTCATGTAG 57.137 45.455 0.00 0.00 35.14 2.74
361 362 4.474394 ACGATCTCCCTGATTCATGTAGA 58.526 43.478 0.00 0.00 35.14 2.59
362 363 4.895889 ACGATCTCCCTGATTCATGTAGAA 59.104 41.667 0.00 0.00 41.28 2.10
363 364 5.363868 ACGATCTCCCTGATTCATGTAGAAA 59.636 40.000 0.00 0.00 40.22 2.52
364 365 6.042552 ACGATCTCCCTGATTCATGTAGAAAT 59.957 38.462 0.00 0.00 40.22 2.17
365 366 7.233553 ACGATCTCCCTGATTCATGTAGAAATA 59.766 37.037 0.00 0.00 40.22 1.40
366 367 7.543868 CGATCTCCCTGATTCATGTAGAAATAC 59.456 40.741 0.00 0.00 40.22 1.89
367 368 7.675161 TCTCCCTGATTCATGTAGAAATACA 57.325 36.000 0.00 0.00 40.22 2.29
368 369 8.089625 TCTCCCTGATTCATGTAGAAATACAA 57.910 34.615 0.00 0.00 40.22 2.41
369 370 8.548025 TCTCCCTGATTCATGTAGAAATACAAA 58.452 33.333 0.00 0.00 40.22 2.83
370 371 9.347240 CTCCCTGATTCATGTAGAAATACAAAT 57.653 33.333 0.00 0.00 40.22 2.32
371 372 9.699410 TCCCTGATTCATGTAGAAATACAAATT 57.301 29.630 0.00 0.00 40.22 1.82
372 373 9.740239 CCCTGATTCATGTAGAAATACAAATTG 57.260 33.333 0.00 0.00 40.22 2.32
422 423 9.850628 AACATGAATCTCATCAACAATACTTTG 57.149 29.630 0.00 0.00 34.28 2.77
423 424 9.017509 ACATGAATCTCATCAACAATACTTTGT 57.982 29.630 0.00 0.00 40.44 2.83
424 425 9.499585 CATGAATCTCATCAACAATACTTTGTC 57.500 33.333 0.00 0.00 38.95 3.18
425 426 8.853077 TGAATCTCATCAACAATACTTTGTCT 57.147 30.769 0.00 0.00 45.30 3.41
426 427 8.724229 TGAATCTCATCAACAATACTTTGTCTG 58.276 33.333 0.00 0.00 45.30 3.51
427 428 6.486253 TCTCATCAACAATACTTTGTCTGC 57.514 37.500 0.00 0.00 45.30 4.26
428 429 6.233434 TCTCATCAACAATACTTTGTCTGCT 58.767 36.000 0.00 0.00 45.30 4.24
429 430 6.369890 TCTCATCAACAATACTTTGTCTGCTC 59.630 38.462 0.00 0.00 45.30 4.26
430 431 5.997129 TCATCAACAATACTTTGTCTGCTCA 59.003 36.000 0.00 0.00 45.30 4.26
431 432 5.673337 TCAACAATACTTTGTCTGCTCAC 57.327 39.130 0.00 0.00 45.30 3.51
432 433 5.368145 TCAACAATACTTTGTCTGCTCACT 58.632 37.500 0.00 0.00 45.30 3.41
433 434 5.822519 TCAACAATACTTTGTCTGCTCACTT 59.177 36.000 0.00 0.00 45.30 3.16
434 435 5.931441 ACAATACTTTGTCTGCTCACTTC 57.069 39.130 0.00 0.00 42.43 3.01
435 436 5.615289 ACAATACTTTGTCTGCTCACTTCT 58.385 37.500 0.00 0.00 42.43 2.85
436 437 5.698545 ACAATACTTTGTCTGCTCACTTCTC 59.301 40.000 0.00 0.00 42.43 2.87
437 438 5.736951 ATACTTTGTCTGCTCACTTCTCT 57.263 39.130 0.00 0.00 0.00 3.10
438 439 4.414337 ACTTTGTCTGCTCACTTCTCTT 57.586 40.909 0.00 0.00 0.00 2.85
439 440 4.775236 ACTTTGTCTGCTCACTTCTCTTT 58.225 39.130 0.00 0.00 0.00 2.52
440 441 5.189180 ACTTTGTCTGCTCACTTCTCTTTT 58.811 37.500 0.00 0.00 0.00 2.27
441 442 6.349300 ACTTTGTCTGCTCACTTCTCTTTTA 58.651 36.000 0.00 0.00 0.00 1.52
442 443 6.481644 ACTTTGTCTGCTCACTTCTCTTTTAG 59.518 38.462 0.00 0.00 0.00 1.85
443 444 4.887748 TGTCTGCTCACTTCTCTTTTAGG 58.112 43.478 0.00 0.00 0.00 2.69
444 445 4.345257 TGTCTGCTCACTTCTCTTTTAGGT 59.655 41.667 0.00 0.00 0.00 3.08
445 446 4.688413 GTCTGCTCACTTCTCTTTTAGGTG 59.312 45.833 0.00 0.00 0.00 4.00
446 447 4.345257 TCTGCTCACTTCTCTTTTAGGTGT 59.655 41.667 0.00 0.00 0.00 4.16
447 448 5.538813 TCTGCTCACTTCTCTTTTAGGTGTA 59.461 40.000 0.00 0.00 0.00 2.90
448 449 6.211584 TCTGCTCACTTCTCTTTTAGGTGTAT 59.788 38.462 0.00 0.00 0.00 2.29
449 450 7.396339 TCTGCTCACTTCTCTTTTAGGTGTATA 59.604 37.037 0.00 0.00 0.00 1.47
450 451 8.079211 TGCTCACTTCTCTTTTAGGTGTATAT 57.921 34.615 0.00 0.00 0.00 0.86
451 452 8.540388 TGCTCACTTCTCTTTTAGGTGTATATT 58.460 33.333 0.00 0.00 0.00 1.28
452 453 9.384764 GCTCACTTCTCTTTTAGGTGTATATTT 57.615 33.333 0.00 0.00 0.00 1.40
463 464 9.757227 TTTTAGGTGTATATTTATGCATTTGCC 57.243 29.630 3.54 0.00 41.18 4.52
464 465 6.345096 AGGTGTATATTTATGCATTTGCCC 57.655 37.500 3.54 0.00 41.18 5.36
465 466 5.837979 AGGTGTATATTTATGCATTTGCCCA 59.162 36.000 3.54 0.00 41.18 5.36
466 467 6.497954 AGGTGTATATTTATGCATTTGCCCAT 59.502 34.615 3.54 0.00 41.18 4.00
467 468 6.591062 GGTGTATATTTATGCATTTGCCCATG 59.409 38.462 3.54 0.00 41.18 3.66
468 469 7.377398 GTGTATATTTATGCATTTGCCCATGA 58.623 34.615 3.54 0.00 41.18 3.07
469 470 8.036575 GTGTATATTTATGCATTTGCCCATGAT 58.963 33.333 3.54 0.00 41.18 2.45
470 471 8.595421 TGTATATTTATGCATTTGCCCATGATT 58.405 29.630 3.54 0.00 41.18 2.57
473 474 7.915293 ATTTATGCATTTGCCCATGATTATG 57.085 32.000 3.54 0.00 41.18 1.90
497 498 7.829725 TGGATTAAATGATTCTGAACTTGTGG 58.170 34.615 0.00 0.00 0.00 4.17
498 499 7.669304 TGGATTAAATGATTCTGAACTTGTGGA 59.331 33.333 0.00 0.00 0.00 4.02
499 500 8.522830 GGATTAAATGATTCTGAACTTGTGGAA 58.477 33.333 0.00 0.00 0.00 3.53
500 501 9.912634 GATTAAATGATTCTGAACTTGTGGAAA 57.087 29.630 0.00 0.00 0.00 3.13
503 504 8.597662 AAATGATTCTGAACTTGTGGAAATTG 57.402 30.769 0.00 0.00 0.00 2.32
504 505 6.713762 TGATTCTGAACTTGTGGAAATTGT 57.286 33.333 0.00 0.00 0.00 2.71
505 506 6.738114 TGATTCTGAACTTGTGGAAATTGTC 58.262 36.000 0.00 0.00 0.00 3.18
506 507 6.547141 TGATTCTGAACTTGTGGAAATTGTCT 59.453 34.615 0.00 0.00 0.00 3.41
507 508 5.756195 TCTGAACTTGTGGAAATTGTCTG 57.244 39.130 0.00 0.00 0.00 3.51
567 568 8.937634 AAATGTATCAGCAGAATTTTTGGATC 57.062 30.769 0.00 0.00 0.00 3.36
657 670 1.708027 CGAAGGGTTTGCGATCGTC 59.292 57.895 17.81 9.69 0.00 4.20
661 674 0.179145 AGGGTTTGCGATCGTCGTAG 60.179 55.000 17.81 0.00 42.81 3.51
669 683 1.963883 GCGATCGTCGTAGAAATCTCG 59.036 52.381 17.81 0.00 42.81 4.04
682 701 6.360148 CGTAGAAATCTCGCTACCAGAATTAC 59.640 42.308 0.00 0.00 34.84 1.89
683 702 6.222038 AGAAATCTCGCTACCAGAATTACA 57.778 37.500 0.00 0.00 0.00 2.41
692 711 4.508124 GCTACCAGAATTACATTGTCCGAG 59.492 45.833 0.00 0.00 0.00 4.63
733 752 9.504708 TGTAGGAATAAAGGAAAACGTAAATCA 57.495 29.630 0.00 0.00 0.00 2.57
823 842 3.868077 GCACAGCACTATATATAGCAGGC 59.132 47.826 18.00 17.69 33.68 4.85
894 913 1.277842 TCACCGTTGCACAGTATCCAT 59.722 47.619 0.00 0.00 0.00 3.41
901 920 4.024893 CGTTGCACAGTATCCATCCATAAC 60.025 45.833 0.00 0.00 0.00 1.89
902 921 4.085357 TGCACAGTATCCATCCATAACC 57.915 45.455 0.00 0.00 0.00 2.85
903 922 3.457749 TGCACAGTATCCATCCATAACCA 59.542 43.478 0.00 0.00 0.00 3.67
905 924 4.275936 GCACAGTATCCATCCATAACCAAC 59.724 45.833 0.00 0.00 0.00 3.77
910 929 7.147213 ACAGTATCCATCCATAACCAACCATAA 60.147 37.037 0.00 0.00 0.00 1.90
911 930 7.391554 CAGTATCCATCCATAACCAACCATAAG 59.608 40.741 0.00 0.00 0.00 1.73
912 931 5.985175 TCCATCCATAACCAACCATAAGA 57.015 39.130 0.00 0.00 0.00 2.10
958 980 2.210116 GTTGCGCTAGCTTATTAGGCA 58.790 47.619 13.93 10.10 45.42 4.75
966 988 1.230324 GCTTATTAGGCAAGCGAGGG 58.770 55.000 0.00 0.00 39.08 4.30
967 989 1.202651 GCTTATTAGGCAAGCGAGGGA 60.203 52.381 0.00 0.00 39.08 4.20
968 990 2.760374 CTTATTAGGCAAGCGAGGGAG 58.240 52.381 0.00 0.00 0.00 4.30
969 991 1.789523 TATTAGGCAAGCGAGGGAGT 58.210 50.000 0.00 0.00 0.00 3.85
1262 1291 2.192187 GCTAGCCAGCCAAGATGCC 61.192 63.158 2.29 0.00 42.37 4.40
1274 1303 2.437359 GATGCCGCTGCTTGGTCT 60.437 61.111 0.70 0.00 38.71 3.85
1279 1308 3.485431 CGCTGCTTGGTCTCTGCG 61.485 66.667 0.00 0.00 42.33 5.18
1286 1315 4.687215 TGGTCTCTGCGTGCTGCC 62.687 66.667 0.00 0.00 45.60 4.85
1303 1332 0.744414 GCCTGCTGATCAACCGCTAA 60.744 55.000 6.93 0.00 0.00 3.09
1372 1409 6.003326 TGATGCACTCTGTATTCTTTTTCCA 58.997 36.000 0.00 0.00 0.00 3.53
1426 1506 3.733727 GTGCAATTGGTTCGGTTTTACTG 59.266 43.478 7.72 0.00 0.00 2.74
1429 1509 4.261447 GCAATTGGTTCGGTTTTACTGTCT 60.261 41.667 7.72 0.00 0.00 3.41
1430 1510 5.212194 CAATTGGTTCGGTTTTACTGTCTG 58.788 41.667 0.00 0.00 0.00 3.51
1470 1551 6.371825 CCTTCTCCAACAACCTTTAGATGTAC 59.628 42.308 0.00 0.00 0.00 2.90
1471 1552 6.681729 TCTCCAACAACCTTTAGATGTACT 57.318 37.500 0.00 0.00 0.00 2.73
1472 1553 6.464222 TCTCCAACAACCTTTAGATGTACTG 58.536 40.000 0.00 0.00 0.00 2.74
1473 1554 6.042781 TCTCCAACAACCTTTAGATGTACTGT 59.957 38.462 0.00 0.00 0.00 3.55
1474 1555 7.233962 TCTCCAACAACCTTTAGATGTACTGTA 59.766 37.037 0.00 0.00 0.00 2.74
1598 1679 0.248565 GTGTAACCGGGGACTCTTCC 59.751 60.000 6.32 0.00 41.95 3.46
1630 1711 4.947388 TCTTAATTGGGTTGCATGACTACC 59.053 41.667 0.00 4.57 42.80 3.18
1649 1730 9.910267 TGACTACCCCCTACTTTAAATTAATTC 57.090 33.333 0.10 0.00 0.00 2.17
1652 1733 7.655521 ACCCCCTACTTTAAATTAATTCTGC 57.344 36.000 0.10 0.00 0.00 4.26
1654 1735 8.562635 ACCCCCTACTTTAAATTAATTCTGCTA 58.437 33.333 0.10 0.00 0.00 3.49
1701 1782 4.201951 CGGACCATTCAACCTCCG 57.798 61.111 0.00 0.00 39.78 4.63
1756 1837 5.012768 ACCGGAAAGGATCAAAGTAAAGAGA 59.987 40.000 9.46 0.00 45.00 3.10
1857 1938 4.404073 CCCGTTTTAATTGGGGATCATCAA 59.596 41.667 0.00 0.00 42.59 2.57
1858 1939 5.451798 CCCGTTTTAATTGGGGATCATCAAG 60.452 44.000 0.00 0.00 42.59 3.02
1859 1940 5.127031 CCGTTTTAATTGGGGATCATCAAGT 59.873 40.000 0.00 0.31 0.00 3.16
1938 2021 0.106967 GCAGTTGAGGGGAGGAATCC 60.107 60.000 0.00 0.00 0.00 3.01
2016 2100 4.342092 TCCTCCTTTGCCTTCTTTTTCTTG 59.658 41.667 0.00 0.00 0.00 3.02
2081 2179 1.139853 GCCTCCCAGGATGAACACTAG 59.860 57.143 0.00 0.00 39.69 2.57
2083 2181 3.643237 CCTCCCAGGATGAACACTAGTA 58.357 50.000 0.00 0.00 39.69 1.82
2109 2207 7.332678 ACTCGGTACTAATCCACACAAAAATAC 59.667 37.037 0.00 0.00 0.00 1.89
2113 2211 9.106070 GGTACTAATCCACACAAAAATACCTAG 57.894 37.037 0.00 0.00 0.00 3.02
2184 2282 5.410067 AGTTTGTGTTTTGTGTCCTTGATG 58.590 37.500 0.00 0.00 0.00 3.07
2243 2342 9.003658 TCCTTTAAGCACAAAATTTGTTTTTCA 57.996 25.926 8.85 0.00 43.23 2.69
2244 2343 9.617975 CCTTTAAGCACAAAATTTGTTTTTCAA 57.382 25.926 8.85 4.15 43.23 2.69
2246 2345 8.666580 TTAAGCACAAAATTTGTTTTTCAAGC 57.333 26.923 8.85 7.70 43.23 4.01
2247 2346 6.251655 AGCACAAAATTTGTTTTTCAAGCA 57.748 29.167 8.85 0.00 43.23 3.91
2248 2347 6.675987 AGCACAAAATTTGTTTTTCAAGCAA 58.324 28.000 8.85 0.00 43.23 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.760047 ACCCAAGCCTACGCAGCG 62.760 66.667 14.82 14.82 37.52 5.18
1 2 2.820037 GACCCAAGCCTACGCAGC 60.820 66.667 0.00 0.00 37.52 5.25
3 4 4.077184 CGGACCCAAGCCTACGCA 62.077 66.667 0.00 0.00 37.52 5.24
4 5 4.078516 ACGGACCCAAGCCTACGC 62.079 66.667 0.00 0.00 0.00 4.42
5 6 2.183555 GACGGACCCAAGCCTACG 59.816 66.667 0.00 0.00 0.00 3.51
6 7 2.183555 CGACGGACCCAAGCCTAC 59.816 66.667 0.00 0.00 0.00 3.18
7 8 3.072468 CCGACGGACCCAAGCCTA 61.072 66.667 8.64 0.00 0.00 3.93
17 18 3.626996 TAAGGAGGACGCCGACGGA 62.627 63.158 20.50 0.00 46.04 4.69
18 19 2.609183 CTTAAGGAGGACGCCGACGG 62.609 65.000 10.29 10.29 46.04 4.79
20 21 0.745468 ATCTTAAGGAGGACGCCGAC 59.255 55.000 1.85 0.00 0.00 4.79
21 22 1.030457 GATCTTAAGGAGGACGCCGA 58.970 55.000 1.85 0.00 0.00 5.54
22 23 0.032267 GGATCTTAAGGAGGACGCCG 59.968 60.000 1.85 0.00 0.00 6.46
23 24 1.120530 TGGATCTTAAGGAGGACGCC 58.879 55.000 1.85 0.00 0.00 5.68
24 25 1.757699 AGTGGATCTTAAGGAGGACGC 59.242 52.381 1.85 0.00 0.00 5.19
25 26 3.952323 TGTAGTGGATCTTAAGGAGGACG 59.048 47.826 1.85 0.00 0.00 4.79
26 27 5.598830 TGATGTAGTGGATCTTAAGGAGGAC 59.401 44.000 1.85 0.00 0.00 3.85
27 28 5.777449 TGATGTAGTGGATCTTAAGGAGGA 58.223 41.667 1.85 0.00 0.00 3.71
28 29 6.098982 ACTTGATGTAGTGGATCTTAAGGAGG 59.901 42.308 1.85 0.00 0.00 4.30
29 30 7.118496 ACTTGATGTAGTGGATCTTAAGGAG 57.882 40.000 1.85 0.00 0.00 3.69
30 31 7.180229 TCAACTTGATGTAGTGGATCTTAAGGA 59.820 37.037 1.85 0.00 0.00 3.36
31 32 7.331026 TCAACTTGATGTAGTGGATCTTAAGG 58.669 38.462 1.85 0.00 0.00 2.69
32 33 8.954950 ATCAACTTGATGTAGTGGATCTTAAG 57.045 34.615 3.32 0.00 34.38 1.85
33 34 7.706607 CGATCAACTTGATGTAGTGGATCTTAA 59.293 37.037 9.08 0.00 46.60 1.85
34 35 7.147897 ACGATCAACTTGATGTAGTGGATCTTA 60.148 37.037 9.08 0.00 46.60 2.10
35 36 6.045318 CGATCAACTTGATGTAGTGGATCTT 58.955 40.000 9.08 0.00 46.60 2.40
36 37 5.127845 ACGATCAACTTGATGTAGTGGATCT 59.872 40.000 9.08 4.44 46.60 2.75
37 38 5.352284 ACGATCAACTTGATGTAGTGGATC 58.648 41.667 9.08 9.96 45.87 3.36
38 39 5.344743 ACGATCAACTTGATGTAGTGGAT 57.655 39.130 9.08 0.00 40.68 3.41
39 40 4.674362 CGACGATCAACTTGATGTAGTGGA 60.674 45.833 9.08 0.00 37.20 4.02
40 41 3.547868 CGACGATCAACTTGATGTAGTGG 59.452 47.826 9.08 4.63 37.20 4.00
41 42 3.000674 GCGACGATCAACTTGATGTAGTG 60.001 47.826 9.08 3.80 37.20 2.74
42 43 3.179830 GCGACGATCAACTTGATGTAGT 58.820 45.455 9.08 6.45 37.20 2.73
43 44 3.179048 TGCGACGATCAACTTGATGTAG 58.821 45.455 9.08 8.80 37.20 2.74
44 45 3.224884 TGCGACGATCAACTTGATGTA 57.775 42.857 9.08 0.00 37.20 2.29
45 46 2.078849 TGCGACGATCAACTTGATGT 57.921 45.000 9.08 7.58 37.20 3.06
46 47 3.544834 GGATTGCGACGATCAACTTGATG 60.545 47.826 9.08 4.71 37.20 3.07
47 48 2.609459 GGATTGCGACGATCAACTTGAT 59.391 45.455 3.80 3.80 40.34 2.57
48 49 1.999735 GGATTGCGACGATCAACTTGA 59.000 47.619 0.00 0.00 0.00 3.02
49 50 1.731709 TGGATTGCGACGATCAACTTG 59.268 47.619 0.00 0.00 0.00 3.16
50 51 2.093306 TGGATTGCGACGATCAACTT 57.907 45.000 0.00 0.00 0.00 2.66
51 52 1.935873 CATGGATTGCGACGATCAACT 59.064 47.619 0.00 0.00 0.00 3.16
52 53 1.003545 CCATGGATTGCGACGATCAAC 60.004 52.381 5.56 0.00 0.00 3.18
53 54 1.298602 CCATGGATTGCGACGATCAA 58.701 50.000 5.56 0.00 0.00 2.57
54 55 0.532640 CCCATGGATTGCGACGATCA 60.533 55.000 15.22 0.00 0.00 2.92
55 56 0.532862 ACCCATGGATTGCGACGATC 60.533 55.000 15.22 0.00 0.00 3.69
56 57 0.815213 CACCCATGGATTGCGACGAT 60.815 55.000 15.22 0.00 0.00 3.73
57 58 1.449423 CACCCATGGATTGCGACGA 60.449 57.895 15.22 0.00 0.00 4.20
58 59 3.101209 CACCCATGGATTGCGACG 58.899 61.111 15.22 0.00 0.00 5.12
59 60 2.774799 GGCACCCATGGATTGCGAC 61.775 63.158 24.12 12.90 37.11 5.19
60 61 2.440065 GGCACCCATGGATTGCGA 60.440 61.111 24.12 0.00 37.11 5.10
61 62 2.440796 AGGCACCCATGGATTGCG 60.441 61.111 24.12 7.63 37.11 4.85
62 63 3.085119 GCAGGCACCCATGGATTGC 62.085 63.158 23.45 23.45 35.40 3.56
63 64 1.683025 TGCAGGCACCCATGGATTG 60.683 57.895 15.22 11.21 0.00 2.67
64 65 1.683365 GTGCAGGCACCCATGGATT 60.683 57.895 15.22 0.00 40.79 3.01
65 66 2.043652 GTGCAGGCACCCATGGAT 60.044 61.111 15.22 0.00 40.79 3.41
66 67 3.578286 TGTGCAGGCACCCATGGA 61.578 61.111 20.60 0.00 45.63 3.41
67 68 3.376078 GTGTGCAGGCACCCATGG 61.376 66.667 20.60 4.14 45.63 3.66
68 69 2.598099 TGTGTGCAGGCACCCATG 60.598 61.111 20.60 0.00 45.63 3.66
69 70 2.598394 GTGTGTGCAGGCACCCAT 60.598 61.111 20.60 0.00 45.63 4.00
70 71 3.772853 GAGTGTGTGCAGGCACCCA 62.773 63.158 20.60 13.43 45.63 4.51
71 72 2.980233 GAGTGTGTGCAGGCACCC 60.980 66.667 20.60 10.82 45.63 4.61
72 73 1.789078 CTTGAGTGTGTGCAGGCACC 61.789 60.000 20.60 12.69 45.63 5.01
73 74 0.815213 TCTTGAGTGTGTGCAGGCAC 60.815 55.000 17.11 17.11 46.33 5.01
74 75 0.107263 TTCTTGAGTGTGTGCAGGCA 60.107 50.000 0.00 0.00 0.00 4.75
75 76 0.308993 GTTCTTGAGTGTGTGCAGGC 59.691 55.000 0.00 0.00 0.00 4.85
76 77 0.947244 GGTTCTTGAGTGTGTGCAGG 59.053 55.000 0.00 0.00 0.00 4.85
77 78 1.869767 GAGGTTCTTGAGTGTGTGCAG 59.130 52.381 0.00 0.00 0.00 4.41
78 79 1.806247 CGAGGTTCTTGAGTGTGTGCA 60.806 52.381 0.00 0.00 0.00 4.57
79 80 0.861837 CGAGGTTCTTGAGTGTGTGC 59.138 55.000 0.00 0.00 0.00 4.57
80 81 2.509052 TCGAGGTTCTTGAGTGTGTG 57.491 50.000 0.00 0.00 0.00 3.82
81 82 4.462834 TCATATCGAGGTTCTTGAGTGTGT 59.537 41.667 0.00 0.00 0.00 3.72
82 83 4.998788 TCATATCGAGGTTCTTGAGTGTG 58.001 43.478 0.00 0.00 0.00 3.82
83 84 5.661056 TTCATATCGAGGTTCTTGAGTGT 57.339 39.130 0.00 0.00 0.00 3.55
84 85 6.968131 TTTTCATATCGAGGTTCTTGAGTG 57.032 37.500 0.00 0.00 0.00 3.51
109 110 9.825972 CGATCGGTAAGCATTTAATAATCAATT 57.174 29.630 7.38 0.00 0.00 2.32
110 111 7.962918 GCGATCGGTAAGCATTTAATAATCAAT 59.037 33.333 18.30 0.00 0.00 2.57
111 112 7.041712 TGCGATCGGTAAGCATTTAATAATCAA 60.042 33.333 18.30 0.00 35.81 2.57
112 113 6.425417 TGCGATCGGTAAGCATTTAATAATCA 59.575 34.615 18.30 0.00 35.81 2.57
113 114 6.827641 TGCGATCGGTAAGCATTTAATAATC 58.172 36.000 18.30 0.00 35.81 1.75
114 115 6.795098 TGCGATCGGTAAGCATTTAATAAT 57.205 33.333 18.30 0.00 35.81 1.28
115 116 6.606234 TTGCGATCGGTAAGCATTTAATAA 57.394 33.333 18.30 0.00 40.83 1.40
116 117 6.223138 CTTGCGATCGGTAAGCATTTAATA 57.777 37.500 18.30 0.00 40.83 0.98
117 118 5.095691 CTTGCGATCGGTAAGCATTTAAT 57.904 39.130 18.30 0.00 40.83 1.40
118 119 4.530094 CTTGCGATCGGTAAGCATTTAA 57.470 40.909 18.30 0.00 40.83 1.52
125 126 1.855360 GAAGAGCTTGCGATCGGTAAG 59.145 52.381 18.30 13.05 40.86 2.34
126 127 1.203758 TGAAGAGCTTGCGATCGGTAA 59.796 47.619 18.30 2.74 0.00 2.85
127 128 0.815095 TGAAGAGCTTGCGATCGGTA 59.185 50.000 18.30 0.00 0.00 4.02
128 129 0.176680 ATGAAGAGCTTGCGATCGGT 59.823 50.000 18.30 0.00 0.00 4.69
129 130 0.857935 GATGAAGAGCTTGCGATCGG 59.142 55.000 18.30 0.83 0.00 4.18
130 131 1.564207 TGATGAAGAGCTTGCGATCG 58.436 50.000 11.69 11.69 0.00 3.69
131 132 2.285486 CGTTGATGAAGAGCTTGCGATC 60.285 50.000 0.00 0.00 0.00 3.69
132 133 1.662629 CGTTGATGAAGAGCTTGCGAT 59.337 47.619 0.00 0.00 0.00 4.58
133 134 1.070821 CGTTGATGAAGAGCTTGCGA 58.929 50.000 0.00 0.00 0.00 5.10
134 135 0.792640 ACGTTGATGAAGAGCTTGCG 59.207 50.000 0.00 0.00 0.00 4.85
135 136 2.224079 TCAACGTTGATGAAGAGCTTGC 59.776 45.455 26.53 0.00 31.01 4.01
136 137 3.742882 TCTCAACGTTGATGAAGAGCTTG 59.257 43.478 29.79 14.74 36.46 4.01
137 138 3.995199 TCTCAACGTTGATGAAGAGCTT 58.005 40.909 29.79 0.00 36.46 3.74
138 139 3.667497 TCTCAACGTTGATGAAGAGCT 57.333 42.857 29.79 0.00 36.46 4.09
139 140 3.681897 ACATCTCAACGTTGATGAAGAGC 59.318 43.478 29.34 0.00 41.69 4.09
140 141 4.031089 CGACATCTCAACGTTGATGAAGAG 59.969 45.833 29.34 21.98 41.69 2.85
141 142 3.920412 CGACATCTCAACGTTGATGAAGA 59.080 43.478 29.34 23.49 41.69 2.87
142 143 3.675225 ACGACATCTCAACGTTGATGAAG 59.325 43.478 29.34 24.71 41.69 3.02
143 144 3.649073 ACGACATCTCAACGTTGATGAA 58.351 40.909 29.34 19.88 41.69 2.57
144 145 3.242518 GACGACATCTCAACGTTGATGA 58.757 45.455 29.34 26.21 41.69 2.92
145 146 2.345641 GGACGACATCTCAACGTTGATG 59.654 50.000 29.79 26.37 43.90 3.07
146 147 2.607187 GGACGACATCTCAACGTTGAT 58.393 47.619 29.79 16.26 40.29 2.57
147 148 1.664874 CGGACGACATCTCAACGTTGA 60.665 52.381 28.07 28.07 40.29 3.18
148 149 0.708370 CGGACGACATCTCAACGTTG 59.292 55.000 22.35 22.35 40.29 4.10
149 150 0.388134 CCGGACGACATCTCAACGTT 60.388 55.000 0.00 0.00 40.29 3.99
150 151 1.211969 CCGGACGACATCTCAACGT 59.788 57.895 0.00 0.00 42.84 3.99
151 152 2.158959 GCCGGACGACATCTCAACG 61.159 63.158 5.05 0.00 0.00 4.10
152 153 1.810030 GGCCGGACGACATCTCAAC 60.810 63.158 5.05 0.00 0.00 3.18
153 154 1.822114 TTGGCCGGACGACATCTCAA 61.822 55.000 5.05 0.00 0.00 3.02
154 155 1.822114 TTTGGCCGGACGACATCTCA 61.822 55.000 5.05 0.00 0.00 3.27
155 156 0.672401 TTTTGGCCGGACGACATCTC 60.672 55.000 5.05 0.00 0.00 2.75
156 157 0.035439 ATTTTGGCCGGACGACATCT 60.035 50.000 5.05 0.00 0.00 2.90
157 158 1.658994 TATTTTGGCCGGACGACATC 58.341 50.000 5.05 0.00 0.00 3.06
158 159 2.158813 AGATATTTTGGCCGGACGACAT 60.159 45.455 5.05 2.54 0.00 3.06
159 160 1.208535 AGATATTTTGGCCGGACGACA 59.791 47.619 5.05 0.00 0.00 4.35
160 161 1.865340 GAGATATTTTGGCCGGACGAC 59.135 52.381 5.05 0.00 0.00 4.34
161 162 1.202604 GGAGATATTTTGGCCGGACGA 60.203 52.381 5.05 0.00 0.00 4.20
162 163 1.226746 GGAGATATTTTGGCCGGACG 58.773 55.000 5.05 0.00 0.00 4.79
163 164 2.341846 TGGAGATATTTTGGCCGGAC 57.658 50.000 5.05 0.56 0.00 4.79
164 165 2.711009 AGATGGAGATATTTTGGCCGGA 59.289 45.455 5.05 0.00 0.00 5.14
165 166 3.146104 AGATGGAGATATTTTGGCCGG 57.854 47.619 0.00 0.00 0.00 6.13
166 167 3.187227 CGAAGATGGAGATATTTTGGCCG 59.813 47.826 0.00 0.00 0.00 6.13
167 168 4.137543 ACGAAGATGGAGATATTTTGGCC 58.862 43.478 0.00 0.00 0.00 5.36
168 169 4.214332 GGACGAAGATGGAGATATTTTGGC 59.786 45.833 0.00 0.00 0.00 4.52
169 170 4.757149 GGGACGAAGATGGAGATATTTTGG 59.243 45.833 0.00 0.00 0.00 3.28
170 171 5.931441 GGGACGAAGATGGAGATATTTTG 57.069 43.478 0.00 0.00 0.00 2.44
194 195 2.034685 TCCGTCTCGTTGGATGATGATC 59.965 50.000 0.00 0.00 0.00 2.92
195 196 2.031870 TCCGTCTCGTTGGATGATGAT 58.968 47.619 0.00 0.00 0.00 2.45
196 197 1.470051 TCCGTCTCGTTGGATGATGA 58.530 50.000 0.00 0.00 0.00 2.92
197 198 2.515926 ATCCGTCTCGTTGGATGATG 57.484 50.000 0.00 0.00 43.30 3.07
201 202 1.226974 CGCATCCGTCTCGTTGGAT 60.227 57.895 0.00 0.00 45.84 3.41
202 203 2.180769 CGCATCCGTCTCGTTGGA 59.819 61.111 0.00 0.00 38.95 3.53
203 204 1.874019 CTCGCATCCGTCTCGTTGG 60.874 63.158 0.00 0.00 35.54 3.77
204 205 0.098200 TACTCGCATCCGTCTCGTTG 59.902 55.000 0.00 0.00 35.54 4.10
205 206 0.377554 CTACTCGCATCCGTCTCGTT 59.622 55.000 0.00 0.00 35.54 3.85
206 207 0.461516 TCTACTCGCATCCGTCTCGT 60.462 55.000 0.00 0.00 35.54 4.18
207 208 0.869068 ATCTACTCGCATCCGTCTCG 59.131 55.000 0.00 0.00 35.54 4.04
208 209 1.874231 TGATCTACTCGCATCCGTCTC 59.126 52.381 0.00 0.00 35.54 3.36
209 210 1.968704 TGATCTACTCGCATCCGTCT 58.031 50.000 0.00 0.00 35.54 4.18
210 211 2.656085 CTTGATCTACTCGCATCCGTC 58.344 52.381 0.00 0.00 35.54 4.79
211 212 1.269309 GCTTGATCTACTCGCATCCGT 60.269 52.381 0.00 0.00 35.54 4.69
212 213 1.413382 GCTTGATCTACTCGCATCCG 58.587 55.000 0.00 0.00 0.00 4.18
213 214 1.069204 TGGCTTGATCTACTCGCATCC 59.931 52.381 0.00 0.00 0.00 3.51
214 215 2.515926 TGGCTTGATCTACTCGCATC 57.484 50.000 0.00 0.00 0.00 3.91
215 216 3.136763 CAATGGCTTGATCTACTCGCAT 58.863 45.455 0.00 0.00 34.04 4.73
216 217 2.168313 TCAATGGCTTGATCTACTCGCA 59.832 45.455 0.00 0.00 36.46 5.10
217 218 2.826428 TCAATGGCTTGATCTACTCGC 58.174 47.619 0.00 0.00 36.46 5.03
226 227 1.311859 GCGATGGATCAATGGCTTGA 58.688 50.000 9.69 2.63 45.15 3.02
227 228 0.313043 GGCGATGGATCAATGGCTTG 59.687 55.000 15.77 0.00 32.42 4.01
228 229 0.825010 GGGCGATGGATCAATGGCTT 60.825 55.000 15.77 0.00 32.42 4.35
229 230 1.228367 GGGCGATGGATCAATGGCT 60.228 57.895 15.77 0.00 32.42 4.75
230 231 2.270986 GGGGCGATGGATCAATGGC 61.271 63.158 8.51 8.51 0.00 4.40
231 232 1.968017 CGGGGCGATGGATCAATGG 60.968 63.158 0.00 0.00 0.00 3.16
232 233 2.620112 GCGGGGCGATGGATCAATG 61.620 63.158 0.00 0.00 0.00 2.82
233 234 2.281761 GCGGGGCGATGGATCAAT 60.282 61.111 0.00 0.00 0.00 2.57
234 235 4.562425 GGCGGGGCGATGGATCAA 62.562 66.667 0.00 0.00 0.00 2.57
236 237 4.688966 GAGGCGGGGCGATGGATC 62.689 72.222 0.00 0.00 0.00 3.36
241 242 4.640690 ATAGGGAGGCGGGGCGAT 62.641 66.667 0.00 0.00 0.00 4.58
244 245 2.930562 ATGATAGGGAGGCGGGGC 60.931 66.667 0.00 0.00 0.00 5.80
245 246 0.838122 AAGATGATAGGGAGGCGGGG 60.838 60.000 0.00 0.00 0.00 5.73
246 247 0.322975 CAAGATGATAGGGAGGCGGG 59.677 60.000 0.00 0.00 0.00 6.13
247 248 1.342074 TCAAGATGATAGGGAGGCGG 58.658 55.000 0.00 0.00 0.00 6.13
248 249 3.475566 TTTCAAGATGATAGGGAGGCG 57.524 47.619 0.00 0.00 0.00 5.52
249 250 3.561725 CGTTTTCAAGATGATAGGGAGGC 59.438 47.826 0.00 0.00 0.00 4.70
250 251 3.561725 GCGTTTTCAAGATGATAGGGAGG 59.438 47.826 0.00 0.00 0.00 4.30
251 252 4.034510 GTGCGTTTTCAAGATGATAGGGAG 59.965 45.833 0.00 0.00 0.00 4.30
252 253 3.938963 GTGCGTTTTCAAGATGATAGGGA 59.061 43.478 0.00 0.00 0.00 4.20
253 254 3.689161 TGTGCGTTTTCAAGATGATAGGG 59.311 43.478 0.00 0.00 0.00 3.53
254 255 4.944962 TGTGCGTTTTCAAGATGATAGG 57.055 40.909 0.00 0.00 0.00 2.57
255 256 6.037062 TGGTATGTGCGTTTTCAAGATGATAG 59.963 38.462 0.00 0.00 0.00 2.08
256 257 5.877564 TGGTATGTGCGTTTTCAAGATGATA 59.122 36.000 0.00 0.00 0.00 2.15
257 258 4.699735 TGGTATGTGCGTTTTCAAGATGAT 59.300 37.500 0.00 0.00 0.00 2.45
258 259 4.068599 TGGTATGTGCGTTTTCAAGATGA 58.931 39.130 0.00 0.00 0.00 2.92
259 260 4.418013 TGGTATGTGCGTTTTCAAGATG 57.582 40.909 0.00 0.00 0.00 2.90
260 261 5.643379 AATGGTATGTGCGTTTTCAAGAT 57.357 34.783 0.00 0.00 0.00 2.40
261 262 5.009110 TGAAATGGTATGTGCGTTTTCAAGA 59.991 36.000 0.00 0.00 32.05 3.02
262 263 5.218885 TGAAATGGTATGTGCGTTTTCAAG 58.781 37.500 0.00 0.00 32.05 3.02
263 264 5.188327 TGAAATGGTATGTGCGTTTTCAA 57.812 34.783 0.00 0.00 32.05 2.69
264 265 4.837896 TGAAATGGTATGTGCGTTTTCA 57.162 36.364 0.00 0.00 32.41 2.69
265 266 5.971202 CCTATGAAATGGTATGTGCGTTTTC 59.029 40.000 0.00 0.00 0.00 2.29
266 267 5.650266 TCCTATGAAATGGTATGTGCGTTTT 59.350 36.000 0.00 0.00 0.00 2.43
267 268 5.189928 TCCTATGAAATGGTATGTGCGTTT 58.810 37.500 0.00 0.00 0.00 3.60
268 269 4.776349 TCCTATGAAATGGTATGTGCGTT 58.224 39.130 0.00 0.00 0.00 4.84
269 270 4.415881 TCCTATGAAATGGTATGTGCGT 57.584 40.909 0.00 0.00 0.00 5.24
270 271 4.378770 GCATCCTATGAAATGGTATGTGCG 60.379 45.833 0.00 0.00 0.00 5.34
271 272 4.520111 TGCATCCTATGAAATGGTATGTGC 59.480 41.667 0.00 0.00 0.00 4.57
272 273 6.638096 TTGCATCCTATGAAATGGTATGTG 57.362 37.500 0.00 0.00 0.00 3.21
273 274 7.658525 TTTTGCATCCTATGAAATGGTATGT 57.341 32.000 0.00 0.00 0.00 2.29
274 275 8.199449 ACTTTTTGCATCCTATGAAATGGTATG 58.801 33.333 0.00 0.00 0.00 2.39
275 276 8.310122 ACTTTTTGCATCCTATGAAATGGTAT 57.690 30.769 0.00 0.00 0.00 2.73
276 277 7.716799 ACTTTTTGCATCCTATGAAATGGTA 57.283 32.000 0.00 0.00 0.00 3.25
277 278 6.610075 ACTTTTTGCATCCTATGAAATGGT 57.390 33.333 0.00 0.00 0.00 3.55
278 279 6.536224 GGAACTTTTTGCATCCTATGAAATGG 59.464 38.462 0.00 0.00 0.00 3.16
279 280 7.098477 TGGAACTTTTTGCATCCTATGAAATG 58.902 34.615 3.57 0.00 33.02 2.32
280 281 7.243604 TGGAACTTTTTGCATCCTATGAAAT 57.756 32.000 3.57 0.00 33.02 2.17
281 282 6.662865 TGGAACTTTTTGCATCCTATGAAA 57.337 33.333 3.57 0.00 33.02 2.69
282 283 6.662865 TTGGAACTTTTTGCATCCTATGAA 57.337 33.333 3.57 0.00 32.39 2.57
283 284 6.127366 GGATTGGAACTTTTTGCATCCTATGA 60.127 38.462 3.85 0.00 32.39 2.15
284 285 6.044682 GGATTGGAACTTTTTGCATCCTATG 58.955 40.000 3.85 0.00 32.39 2.23
285 286 5.129320 GGGATTGGAACTTTTTGCATCCTAT 59.871 40.000 3.57 1.39 34.29 2.57
286 287 4.466015 GGGATTGGAACTTTTTGCATCCTA 59.534 41.667 3.57 0.00 34.29 2.94
287 288 3.261643 GGGATTGGAACTTTTTGCATCCT 59.738 43.478 3.57 0.00 34.29 3.24
288 289 3.599343 GGGATTGGAACTTTTTGCATCC 58.401 45.455 0.00 0.00 32.39 3.51
289 290 3.056891 TCGGGATTGGAACTTTTTGCATC 60.057 43.478 0.00 0.00 32.39 3.91
290 291 2.896685 TCGGGATTGGAACTTTTTGCAT 59.103 40.909 0.00 0.00 32.39 3.96
291 292 2.311463 TCGGGATTGGAACTTTTTGCA 58.689 42.857 0.00 0.00 0.00 4.08
292 293 3.511699 GATCGGGATTGGAACTTTTTGC 58.488 45.455 0.00 0.00 0.00 3.68
293 294 3.427503 CGGATCGGGATTGGAACTTTTTG 60.428 47.826 0.00 0.00 0.00 2.44
294 295 2.752903 CGGATCGGGATTGGAACTTTTT 59.247 45.455 0.00 0.00 0.00 1.94
295 296 2.365582 CGGATCGGGATTGGAACTTTT 58.634 47.619 0.00 0.00 0.00 2.27
296 297 2.017113 GCGGATCGGGATTGGAACTTT 61.017 52.381 2.13 0.00 0.00 2.66
297 298 0.463833 GCGGATCGGGATTGGAACTT 60.464 55.000 2.13 0.00 0.00 2.66
298 299 1.146263 GCGGATCGGGATTGGAACT 59.854 57.895 2.13 0.00 0.00 3.01
299 300 1.892391 GGCGGATCGGGATTGGAAC 60.892 63.158 2.13 0.00 0.00 3.62
300 301 2.508928 GGCGGATCGGGATTGGAA 59.491 61.111 2.13 0.00 0.00 3.53
301 302 3.923864 CGGCGGATCGGGATTGGA 61.924 66.667 0.00 0.00 0.00 3.53
302 303 2.167398 ATACGGCGGATCGGGATTGG 62.167 60.000 13.24 0.00 0.00 3.16
303 304 1.014044 CATACGGCGGATCGGGATTG 61.014 60.000 13.24 0.00 0.00 2.67
304 305 1.292223 CATACGGCGGATCGGGATT 59.708 57.895 13.24 0.00 0.00 3.01
305 306 0.609957 TACATACGGCGGATCGGGAT 60.610 55.000 13.24 0.00 0.00 3.85
306 307 0.609957 ATACATACGGCGGATCGGGA 60.610 55.000 13.24 0.00 0.00 5.14
307 308 0.179145 GATACATACGGCGGATCGGG 60.179 60.000 13.24 0.00 0.00 5.14
308 309 0.524414 TGATACATACGGCGGATCGG 59.476 55.000 13.24 0.00 0.00 4.18
309 310 2.159435 TGATGATACATACGGCGGATCG 60.159 50.000 13.24 5.90 0.00 3.69
310 311 3.503827 TGATGATACATACGGCGGATC 57.496 47.619 13.24 6.46 0.00 3.36
311 312 4.433615 GAATGATGATACATACGGCGGAT 58.566 43.478 13.24 4.81 0.00 4.18
312 313 3.368013 GGAATGATGATACATACGGCGGA 60.368 47.826 13.24 1.23 0.00 5.54
313 314 2.930040 GGAATGATGATACATACGGCGG 59.070 50.000 13.24 0.00 0.00 6.13
314 315 3.584834 TGGAATGATGATACATACGGCG 58.415 45.455 4.80 4.80 0.00 6.46
315 316 7.464358 GTTTATGGAATGATGATACATACGGC 58.536 38.462 0.00 0.00 0.00 5.68
316 317 7.544217 TCGTTTATGGAATGATGATACATACGG 59.456 37.037 0.00 0.00 0.00 4.02
317 318 8.460831 TCGTTTATGGAATGATGATACATACG 57.539 34.615 0.00 0.00 0.00 3.06
320 321 9.376075 GAGATCGTTTATGGAATGATGATACAT 57.624 33.333 3.83 0.00 42.63 2.29
321 322 7.819415 GGAGATCGTTTATGGAATGATGATACA 59.181 37.037 3.83 0.00 42.63 2.29
322 323 7.278868 GGGAGATCGTTTATGGAATGATGATAC 59.721 40.741 3.83 0.00 42.63 2.24
323 324 7.180946 AGGGAGATCGTTTATGGAATGATGATA 59.819 37.037 3.83 0.00 42.63 2.15
324 325 6.013032 AGGGAGATCGTTTATGGAATGATGAT 60.013 38.462 3.83 0.00 42.63 2.45
325 326 5.307976 AGGGAGATCGTTTATGGAATGATGA 59.692 40.000 3.83 0.00 42.63 2.92
326 327 5.410746 CAGGGAGATCGTTTATGGAATGATG 59.589 44.000 3.83 0.00 42.63 3.07
327 328 5.307976 TCAGGGAGATCGTTTATGGAATGAT 59.692 40.000 0.00 0.00 44.69 2.45
328 329 4.653801 TCAGGGAGATCGTTTATGGAATGA 59.346 41.667 0.00 0.00 37.65 2.57
329 330 4.960938 TCAGGGAGATCGTTTATGGAATG 58.039 43.478 0.00 0.00 0.00 2.67
330 331 5.832539 ATCAGGGAGATCGTTTATGGAAT 57.167 39.130 0.00 0.00 28.20 3.01
331 332 5.130311 TGAATCAGGGAGATCGTTTATGGAA 59.870 40.000 0.00 0.00 35.39 3.53
332 333 4.653801 TGAATCAGGGAGATCGTTTATGGA 59.346 41.667 0.00 0.00 35.39 3.41
333 334 4.960938 TGAATCAGGGAGATCGTTTATGG 58.039 43.478 0.00 0.00 35.39 2.74
334 335 5.994054 ACATGAATCAGGGAGATCGTTTATG 59.006 40.000 0.00 0.00 35.39 1.90
335 336 6.179906 ACATGAATCAGGGAGATCGTTTAT 57.820 37.500 0.00 0.00 35.39 1.40
336 337 5.614324 ACATGAATCAGGGAGATCGTTTA 57.386 39.130 0.00 0.00 35.39 2.01
337 338 4.494091 ACATGAATCAGGGAGATCGTTT 57.506 40.909 0.00 0.00 35.39 3.60
338 339 4.895889 TCTACATGAATCAGGGAGATCGTT 59.104 41.667 5.63 0.00 29.64 3.85
339 340 4.474394 TCTACATGAATCAGGGAGATCGT 58.526 43.478 5.63 0.00 29.64 3.73
340 341 5.459536 TTCTACATGAATCAGGGAGATCG 57.540 43.478 10.89 0.00 34.99 3.69
341 342 8.370940 TGTATTTCTACATGAATCAGGGAGATC 58.629 37.037 10.89 3.53 34.99 2.75
342 343 8.267620 TGTATTTCTACATGAATCAGGGAGAT 57.732 34.615 10.89 0.00 34.99 2.75
343 344 7.675161 TGTATTTCTACATGAATCAGGGAGA 57.325 36.000 5.63 5.63 33.02 3.71
344 345 8.737168 TTTGTATTTCTACATGAATCAGGGAG 57.263 34.615 0.00 0.00 37.68 4.30
345 346 9.699410 AATTTGTATTTCTACATGAATCAGGGA 57.301 29.630 0.00 0.00 37.68 4.20
346 347 9.740239 CAATTTGTATTTCTACATGAATCAGGG 57.260 33.333 0.00 0.00 37.68 4.45
396 397 9.850628 CAAAGTATTGTTGATGAGATTCATGTT 57.149 29.630 0.00 0.00 37.20 2.71
413 414 5.931146 AGAGAAGTGAGCAGACAAAGTATTG 59.069 40.000 0.00 0.00 42.46 1.90
414 415 6.107901 AGAGAAGTGAGCAGACAAAGTATT 57.892 37.500 0.00 0.00 0.00 1.89
415 416 5.736951 AGAGAAGTGAGCAGACAAAGTAT 57.263 39.130 0.00 0.00 0.00 2.12
416 417 5.537300 AAGAGAAGTGAGCAGACAAAGTA 57.463 39.130 0.00 0.00 0.00 2.24
417 418 4.414337 AAGAGAAGTGAGCAGACAAAGT 57.586 40.909 0.00 0.00 0.00 2.66
418 419 5.747951 AAAAGAGAAGTGAGCAGACAAAG 57.252 39.130 0.00 0.00 0.00 2.77
419 420 5.760253 CCTAAAAGAGAAGTGAGCAGACAAA 59.240 40.000 0.00 0.00 0.00 2.83
420 421 5.163301 ACCTAAAAGAGAAGTGAGCAGACAA 60.163 40.000 0.00 0.00 0.00 3.18
421 422 4.345257 ACCTAAAAGAGAAGTGAGCAGACA 59.655 41.667 0.00 0.00 0.00 3.41
422 423 4.688413 CACCTAAAAGAGAAGTGAGCAGAC 59.312 45.833 0.00 0.00 0.00 3.51
423 424 4.345257 ACACCTAAAAGAGAAGTGAGCAGA 59.655 41.667 0.00 0.00 32.76 4.26
424 425 4.636249 ACACCTAAAAGAGAAGTGAGCAG 58.364 43.478 0.00 0.00 32.76 4.24
425 426 4.689612 ACACCTAAAAGAGAAGTGAGCA 57.310 40.909 0.00 0.00 32.76 4.26
426 427 8.950208 AATATACACCTAAAAGAGAAGTGAGC 57.050 34.615 0.00 0.00 32.76 4.26
437 438 9.757227 GGCAAATGCATAAATATACACCTAAAA 57.243 29.630 0.00 0.00 44.36 1.52
438 439 8.364142 GGGCAAATGCATAAATATACACCTAAA 58.636 33.333 0.00 0.00 44.36 1.85
439 440 7.507277 TGGGCAAATGCATAAATATACACCTAA 59.493 33.333 0.00 0.00 44.36 2.69
440 441 7.007116 TGGGCAAATGCATAAATATACACCTA 58.993 34.615 0.00 0.00 44.36 3.08
441 442 5.837979 TGGGCAAATGCATAAATATACACCT 59.162 36.000 0.00 0.00 44.36 4.00
442 443 6.095432 TGGGCAAATGCATAAATATACACC 57.905 37.500 0.00 0.00 44.36 4.16
443 444 7.377398 TCATGGGCAAATGCATAAATATACAC 58.623 34.615 0.00 0.00 44.36 2.90
444 445 7.536159 TCATGGGCAAATGCATAAATATACA 57.464 32.000 0.00 0.00 44.36 2.29
447 448 9.607988 CATAATCATGGGCAAATGCATAAATAT 57.392 29.630 0.00 0.00 44.36 1.28
449 450 7.915293 CATAATCATGGGCAAATGCATAAAT 57.085 32.000 0.00 0.00 44.36 1.40
471 472 8.472413 CCACAAGTTCAGAATCATTTAATCCAT 58.528 33.333 0.00 0.00 0.00 3.41
472 473 7.669304 TCCACAAGTTCAGAATCATTTAATCCA 59.331 33.333 0.00 0.00 0.00 3.41
473 474 8.055279 TCCACAAGTTCAGAATCATTTAATCC 57.945 34.615 0.00 0.00 0.00 3.01
474 475 9.912634 TTTCCACAAGTTCAGAATCATTTAATC 57.087 29.630 0.00 0.00 0.00 1.75
477 478 9.695526 CAATTTCCACAAGTTCAGAATCATTTA 57.304 29.630 0.00 0.00 0.00 1.40
478 479 8.206189 ACAATTTCCACAAGTTCAGAATCATTT 58.794 29.630 0.00 0.00 0.00 2.32
479 480 7.729116 ACAATTTCCACAAGTTCAGAATCATT 58.271 30.769 0.00 0.00 0.00 2.57
480 481 7.232127 AGACAATTTCCACAAGTTCAGAATCAT 59.768 33.333 0.00 0.00 0.00 2.45
481 482 6.547141 AGACAATTTCCACAAGTTCAGAATCA 59.453 34.615 0.00 0.00 0.00 2.57
482 483 6.860023 CAGACAATTTCCACAAGTTCAGAATC 59.140 38.462 0.00 0.00 0.00 2.52
483 484 6.322201 ACAGACAATTTCCACAAGTTCAGAAT 59.678 34.615 0.00 0.00 0.00 2.40
484 485 5.652014 ACAGACAATTTCCACAAGTTCAGAA 59.348 36.000 0.00 0.00 0.00 3.02
485 486 5.192927 ACAGACAATTTCCACAAGTTCAGA 58.807 37.500 0.00 0.00 0.00 3.27
486 487 5.505173 ACAGACAATTTCCACAAGTTCAG 57.495 39.130 0.00 0.00 0.00 3.02
487 488 5.184864 ACAACAGACAATTTCCACAAGTTCA 59.815 36.000 0.00 0.00 0.00 3.18
488 489 5.650543 ACAACAGACAATTTCCACAAGTTC 58.349 37.500 0.00 0.00 0.00 3.01
489 490 5.659440 ACAACAGACAATTTCCACAAGTT 57.341 34.783 0.00 0.00 0.00 2.66
490 491 6.767524 TTACAACAGACAATTTCCACAAGT 57.232 33.333 0.00 0.00 0.00 3.16
491 492 9.180678 GTTATTACAACAGACAATTTCCACAAG 57.819 33.333 0.00 0.00 0.00 3.16
492 493 8.687242 TGTTATTACAACAGACAATTTCCACAA 58.313 29.630 0.00 0.00 0.00 3.33
493 494 8.226819 TGTTATTACAACAGACAATTTCCACA 57.773 30.769 0.00 0.00 0.00 4.17
505 506 9.820229 ACGTTTCACAATATGTTATTACAACAG 57.180 29.630 0.00 0.00 37.91 3.16
567 568 5.941948 GGTTAGGATGATTAACCGAATGG 57.058 43.478 0.00 0.00 40.30 3.16
657 670 3.965292 TCTGGTAGCGAGATTTCTACG 57.035 47.619 0.00 0.00 36.82 3.51
661 674 7.011482 ACAATGTAATTCTGGTAGCGAGATTTC 59.989 37.037 0.00 0.00 31.22 2.17
669 683 4.439057 TCGGACAATGTAATTCTGGTAGC 58.561 43.478 0.00 0.00 31.22 3.58
717 736 4.721132 TGGACCTGATTTACGTTTTCCTT 58.279 39.130 0.00 0.00 0.00 3.36
725 744 1.134367 TCTCGCTGGACCTGATTTACG 59.866 52.381 1.91 0.00 0.00 3.18
733 752 2.681778 CCCTGTCTCGCTGGACCT 60.682 66.667 0.00 0.00 38.33 3.85
823 842 2.125147 TTCGGGAGAATGGCGCAG 60.125 61.111 10.83 0.00 45.39 5.18
880 899 4.080072 TGGTTATGGATGGATACTGTGCAA 60.080 41.667 0.00 0.00 37.61 4.08
894 913 3.804036 CGCTCTTATGGTTGGTTATGGA 58.196 45.455 0.00 0.00 0.00 3.41
901 920 1.723870 GCTGCGCTCTTATGGTTGG 59.276 57.895 9.73 0.00 0.00 3.77
902 921 1.349627 CGCTGCGCTCTTATGGTTG 59.650 57.895 9.88 0.00 0.00 3.77
903 922 3.799753 CGCTGCGCTCTTATGGTT 58.200 55.556 9.88 0.00 0.00 3.67
919 938 0.806102 CCCGTACTGATCCTGTTGCG 60.806 60.000 0.00 0.00 0.00 4.85
958 980 0.033405 TGCCTACTACTCCCTCGCTT 60.033 55.000 0.00 0.00 0.00 4.68
963 985 0.688087 GTGCCTGCCTACTACTCCCT 60.688 60.000 0.00 0.00 0.00 4.20
964 986 0.688087 AGTGCCTGCCTACTACTCCC 60.688 60.000 0.00 0.00 0.00 4.30
965 987 0.461961 CAGTGCCTGCCTACTACTCC 59.538 60.000 0.00 0.00 0.00 3.85
966 988 1.134965 CACAGTGCCTGCCTACTACTC 60.135 57.143 2.50 0.00 34.37 2.59
967 989 0.898320 CACAGTGCCTGCCTACTACT 59.102 55.000 2.50 0.00 34.37 2.57
968 990 0.741221 GCACAGTGCCTGCCTACTAC 60.741 60.000 15.27 0.00 37.42 2.73
969 991 1.191489 TGCACAGTGCCTGCCTACTA 61.191 55.000 23.06 0.00 44.23 1.82
1005 1031 4.681978 GGCGACTCCACCGTGCTT 62.682 66.667 0.00 0.00 34.01 3.91
1262 1291 3.485431 CGCAGAGACCAAGCAGCG 61.485 66.667 0.00 0.00 39.17 5.18
1286 1315 2.015736 AGTTAGCGGTTGATCAGCAG 57.984 50.000 11.93 8.60 39.61 4.24
1303 1332 1.686052 GAGATCGATGGCAGGAGAAGT 59.314 52.381 0.54 0.00 0.00 3.01
1470 1551 1.147473 TGCAGAACACGTGCATACAG 58.853 50.000 17.22 2.09 45.96 2.74
1471 1552 3.297391 TGCAGAACACGTGCATACA 57.703 47.368 17.22 5.07 45.96 2.29
1598 1679 3.199880 ACCCAATTAAGAGATGAGCGG 57.800 47.619 0.00 0.00 0.00 5.52
1649 1730 7.872113 ACCCATCTTTATTCTTCTTTAGCAG 57.128 36.000 0.00 0.00 0.00 4.24
1652 1733 8.391106 CACGAACCCATCTTTATTCTTCTTTAG 58.609 37.037 0.00 0.00 0.00 1.85
1654 1735 6.940298 TCACGAACCCATCTTTATTCTTCTTT 59.060 34.615 0.00 0.00 0.00 2.52
1656 1737 5.875359 GTCACGAACCCATCTTTATTCTTCT 59.125 40.000 0.00 0.00 0.00 2.85
1657 1738 5.064834 GGTCACGAACCCATCTTTATTCTTC 59.935 44.000 0.00 0.00 42.85 2.87
1658 1739 4.941873 GGTCACGAACCCATCTTTATTCTT 59.058 41.667 0.00 0.00 42.85 2.52
1659 1740 4.514401 GGTCACGAACCCATCTTTATTCT 58.486 43.478 0.00 0.00 42.85 2.40
1756 1837 2.194212 CAGTCGATCGATCCCCCGT 61.194 63.158 22.50 0.00 0.00 5.28
1857 1938 7.554835 GCTACTCCATGCATCTACTATACTACT 59.445 40.741 0.00 0.00 0.00 2.57
1858 1939 7.337184 TGCTACTCCATGCATCTACTATACTAC 59.663 40.741 0.00 0.00 33.94 2.73
1859 1940 7.402862 TGCTACTCCATGCATCTACTATACTA 58.597 38.462 0.00 0.00 33.94 1.82
2059 2157 0.678048 GTGTTCATCCTGGGAGGCAC 60.678 60.000 0.00 0.00 34.61 5.01
2081 2179 4.970662 TGTGTGGATTAGTACCGAGTAC 57.029 45.455 6.19 6.19 39.10 2.73
2083 2181 4.877378 TTTGTGTGGATTAGTACCGAGT 57.123 40.909 0.00 0.00 0.00 4.18
2184 2282 7.532682 TTTAGCACTTGATTTTGTTGTTTCC 57.467 32.000 0.00 0.00 0.00 3.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.