>input_sequence_85972
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-----------------------------------------------------------------ATGGCAAGCACGGTG
GAGTCGCCGACGAGCTCGTGCGTGTCGTCGGACACGGAGGAGGAGGCCGCGGCGGTGACGAAGCCGATGGTGGTGGTGGG
GTGCCCGCAGTGCCTCATGTACGTGATGCTGTCGGGGGCGGCCGAGGAGCAGCCCAGGTGCCCCCGGTGCAAGAGCCCCG
TGCTGCTGCACTTCCTCCACGGCGC---CGCCGCCGACGTCGCCAGCACCAACAGGCAGCAGCCCAGCAAGAGCTAG---
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>chr2A_1_TraesCS2A01G383200
CGCTGCGTAGGCTTGGGTCCGTCGGCGTCCTCCTTAAGATCCACTACATCAAGTTGATCGTCGCAATCCATGGGTGCCTG
CACACACTCAAGAACCTCGATATGAAAAAAATTGATTATTAAATGCTTACCGATCGCAAGCTCTTCATCAACGTTGAGAT
GTCGTCCGGCCAAAATATCTCCATCTTCGTCCCGGATCATCATCCAACGAGACGGATGCGAGTAGATCAAGCCATTGATC
CATCGCCCCGCCTCCCTATCATCTTGAAAACGCACATACCATTTCATAGGATGCAAAAAGTTCCAATCCCGATCCGCCGT
ATGTATCATCATTCCATAAACGATCTCCCTGATTCATGTAGAAATACAAATTGAAAAATTCGAAGAATATTAAAAAAACA
TGAATCTCATCAACAATACTTTGTCTGCTCACTTCTCTTTTAGGTGTATATTTATGCATTTGCCCATGATTATGGATTAA
ATGATTCTGAACTTGTGGAAATTGTCTGTTGTAATAACATATTGTGAAACGTTTAATTATTTAAATGTATCAGCAGAATT
TTTGGATCCATTCGGTTAATCATCCTAACCAAGATCGATTGTTGGATTACAAAAAATATTTTT------------ATTCT
CAGATTCTATCCGAAGGGTTTGCGATCGTCGTAG-AAATCTCGCTACCA-----GAATTACATTGTCCGAGAGAAAAAAG
ATCTTTGTAGGAATAAAGGAAAACGTAAATCAGGTCCAGCGAGACAGGGGAGGTTCTTGCATTCAAGTGCTGGCCATGCC
GTCCCCCTTCCTCCCGAGGGCACAGCACTATATATAGCAGGCTGCGCCATTCTCCCGAAACACAAACATAGCTCCTCTCC
TCCTGTGCGCGCTCACCGTTGCACAGTATCCATCCATAACCAACCATAAGAGCGCAGCGCAACAGG---ATCAGTACGGG
TTGCGCTAGCTTATTAGGCAAGCGAGGGAGT----AGTAGGCAGGCACTGTGCAGGAGGTGATCCATGGCAAGCACGGTG
GAGTCGCCGACGAGCTCGTGCGTGTCGTCGGACACGGAGGAGGAGGCCGCGGCGGTGACGAAGCCGATGGTGGTGGTGGG
GTGCCCGCAGTGCCTCATGTACGTGATGCTGTCGGGGGCGGCCGAGGAGCAGCCCAGGTGCCCCCGGTGCAAGAGCCCCG
TGCTGCTGCACTTCCTCCACGGCGC---CGCCGCCGACGTCGCCAGCACCAACAGGCAGCAGCCCAGCAAGAGCTAGCCA
GCCAAGATGCCGCTGCTTGGTCTCTGCGTGCTGCCTGCTGATCAACCGCTAACTTCTCCTGCCATCGATCTCCACCATGT
TCTAACTCGTGTATTCTGATGCACTCTGTATTCTT--------TTTCCATTTTCGTCGACGAT-----------------
--------------------------AAATCTTTTACAGCCTGGTGCAATTGGTTCGGTTTTACTGTCTG-TTAGCAGTG
GCTGTCCTTCTCCAACAACCTTTAGATGTACTGTATGCACGTGTTCTGCACCGTGAAGGTCGATGTCTGTTTTAATCCCC
TCCTTAATTTTGGTTTGAATAAGATGAGATTTCATTAAGAAAGTCGTTTGCAATGTACCGTGTAACCGGGGACTCTTCCC
GCTCATCTCTTAATTGGGTTGCATGACTACCCCCTACTTTAAATTAATTCTGCTAAAGAAGAATAAAGATGGGTTCGTGA
CCAACGGACCATTCAACCTCCGGCTAGCTATGGCAGCGTAGCCCGGATGGTGACCGGAAAGGATCAAAGTAAAGAGACGG
GGGATCGATCGACTGAGTTATTGTGATGGATGGATGGGTGCATGGAGCAATCGGCCGCTCATGGAAAACCTGTGCCCGTT
TTAATTGGGGATCATCAAGTAGTATAGTAGATGCATGGAGTAGCAGCAGATA--CAGAATAAATACGGGCAATAATTAGG
AGCAGTTGAGGGGAGGAATCC-GGCTTATTTAGCACGCACGCCAGTTCGTCATCAAGCGGTCATTTACATCCACCGTCCT
CCTTTGCCTTCTTTTTCTTGGCGTCCTTCCCGTGCCAT--------------GCCAAAAGGACACGGTGGGTGAAAGTGC
CTCCCAGGATGAACACTAGTACTCGGTACTAATCCACACAAAAATACCTAGTAAAAGTGAAAATAAAATCTGAATGCCTG
AGTAATTTTCAGGAAAGTAGTTTGTGTTTTGTGTCCTTGATGGAAACAACAAAATCAAGTGCTAAAAAAAT-AAATCCTT
TAAGCACAAAATTTGTTTTTCAAGCAA
>chr2D_509
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----------------------------TTGTAATAACATATTATGAAATGTTTACTTATTTAAATGTATCAGCACAGTT
TTTGGATTCATTCGGTTAATCACCCTAACCAAGATCGATTGTTGGATTACAAAAAATATTTTTATTCTAAGTTTTATTCT
CAGATTCTATCTGAAGGGTTTGCGATCGTTGTACAAAATCTCTCTACAA-----GAATTATCTTGTCCGAAAGAAAAAAG
ATCTTTGTAGGAATACACGAAAAAGTAAATCGGGTCCAGCGAGACAGGGGTGGTTCTTGCATTCAAGTGCTGGCCATGCC
GTCCCCCTTCCTCCCCAGGGCACAGCACTATATATAGCAGGTTGCGCCATTCTCCCGAAACACAAACATAGCTCCTCTCC
TCCTGTGCGCGCTCACCGCTGCACAGTATCCACCCATAAG--AGCATATAGGCGCAGTGCAACACG---ATCAGTACGGG
CTGCGCTAGCTTCTTAGT-------CTAGCGAGGGAGCAGGCGGGCACTGTGCAGGAGGTGATCCATGGCGAGCACGGTG
GAGTCTCCGACGAGCTCGTGCGTGTCGTCGGACACGGAGGAGGAGGCCGCGGCGGTGACGAAGCCGATGGTGGTGGTGGG
GTGCCCGCAGTGCCTCATGTACGTGATGCTGTCGGGGGCGGCCGAGGAGCAGCCCCGGTGCCCCCGGTGCAAGAGCCCCG
TGCTGCTGCACTTCCTCCACGGCGC---CGTCGCCGACGCCGCCAGCACCAACAGGCAGCAGCCCAGCAAGAGCTAGCCA
GCCAAGATGCTGCCGCTTGGTCGCTGCATGCTGCTTGCTGATCAATCGCTAGCTTCTCCCGTCATCGATCTCCACCATGT
TCTAACTCGTGTATTCTGATGCACCCTGTATTCTTGTTTTTTTTTTTCCTTTTCGTCGACG---GTAAATTCCATGCGAG
TAGAGCTCTCAAGAAGACAAGAACAC-AATCTTTTACAGCCTGGTGCAATTGGTTCCGTTTTTACTGTCTCTTAGCAGTG
GCTGTCCTTCTCCAACAACCTTTAGATGTA-----TGCACGTGTTCTGCACCGTGAAGGTTGATATCTGTTTTAATCTGC
TCCTTAATTTTGGTTTGAATAAGATGAGATTTCATTAAGAAAGTCGTTTGCAATGTACCGTGTAGCCGGGGACTCTTCTT
GCTCATCTCTTAATTGGGTTGCATGACTACTCCCTACTTTAATTTAATTTCGTTGAG---GAATAAAGATGGGTTCGTGA
C----GGACCATTCAACCTCCAGCTAGCTATGGCAACGTAGCCCGGATGGTGACGGGAAAAGATCAAAGTAAAGAGGCGG
GGGAT----CGACTGAGTTATTGTGATGGATGGATGGGTGCATGGAGCAATCGGCCGCTCATGGAAAACCTGTGCCCGTT
TTAATTGGGGATCATCA---AGTATAGTAGATGCATGGAGTAGCAGCGGATATACAGAATAAATACGGGCAATAATTAGG
AGCAGTTGAGGGGAGGAATCGGGGCTTATTTAGCGCGCACGCCAGTTCGTCATCAAGCGGTCATTTACATCCACCGTCCT
CCTTTGCCGCCTTTTTCTTCGCGTCCTTCCCGTGCCATTGG-AAAGGGCCATGCCAACAGGACACGGTGGGTGAAATTGC
CTCCCGGGATGAACACTACTCGGCACTACTAATCCACACAAAAATAGCTAAAAA----GAAAATAAAATCTTAATGTCTG
AGTAATTTTCAGGAAAGTAGTTTTT-TTGTGTGTCCTTGATAGAAAAAACAAAATCAAGTGCTAAAAAAATCAAATCCTT
TAAGCATAAAATTTGTTT---------
>chr2B_516
AACAATACTC----------------------------------------------------------------------
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-------------------------------------------GTGAAATGTTTAATGATTTGAACGTATCAGCAGAATT
TTTGGATTAACTTGATTAATCATCCTGACCAAGATCGA----TGGATTACAAAAAATATTTT-------------ATTCT
CAGATTCTATCCGAGGGGTTTGCGATCTTTTTA-AAAATCTCATCCTCGCTAGGGAATTATCTTATCCGAAAG-AAAAAG
ATCTTGGTAGGAATACAGGAAAAAGTAAATCGAGTCCAGCGAGACATGGGAGGTTCTTGGATTCAAGTGCTGGCCATGCC
GTCCCCCTTCCTCCCGAGGGCACAGCACTATATATAGCAGGTTGCGCCATTCTCCCGAAACACAAACATAGCTCCTCTCC
TCCTGTGCGCGCTCACCGCTGCACAGTATCCACCCATAAG--AGCATATAGGCGCAGTGCAACAGGATCATCAGTACGGG
TTGCACTAGCTTATTAGGCTAGCGGCTAGCGAGGGAGTAGGCAGGCACTGCGCAGGAGCTGATCCATGGCGAGCACGGTG
GAGTCGCCGACGAGCTCGTGCGTGTCGTCGGACACGGAGGAGGAGGCCGCGGCGGTGACGAAGCCGATGGTGGTGGTGGG
GTGCCCGCAGTGCCTCATGTACGTGATGCTGTCGGGGGCGGCGGAGGAGCAGCCCAGGTGCCCCCGGTGCAAGAGCCCCG
TGCTGCTGCACTTCCTCCACGGCGCTGCCGCCGCCGCCGCCGCCAGCACCAACAGGCAGCAGCCCAGCAAGAGCTAGCCA
GCCAACATGCTGCTGCTTGGTCGCTGCATGCTGCTTGCTGATCAGCCGCTAGCTTCTCCTGCCATCGATCTCCACCATGT
TCTAACTCGTGTATTCTGCTGCACTATGTAGCTC---TTCTTTTTTCCCTTTTCGTCGACGATAGTAATTTCCATGCGAG
TAA--CTCTCAAGAAGACAAGAACGCAAATCTTTTACAGCCTGGTGCAATTGGCTCGGTTTTACTCTCG-CTTAGCAGTG
GCTGTCCTTCTCCAACAACCTTTAGATGTA-----TGCACGTGTTCTGCACCGTGAAGGTCGATGTCTGTTTTAATCCCC
TCCTTAATTTCGGTTTGAATAAGATGAGATTTCATTAAGAAAGTCGTTTGCAATGTACCGTGTAACCGGGGACTCTTCTC
GCTCATCTCTTAATTGGGTTGCATGACTACTCCCTACTTTAAATTAATTTTGTTGAG---GAATAAAGATGGGTTCGTGA
CCAACGGACCATTCAACCTCCAGCTAGCTATGGCAGCGTAGCCCGGATGGTGACCGGAAAGGATCAAAGTAAAGAGGCGG
GGGATCGATCGACTGAGTTATTGTGATGGATGGATGGGTGCATGGAGCAATCGGCCGCTCATGGAAAACCTGTGCCCGTT
TTAATTGGGGATCATCA---AGTATAGTAGATGCATGGAGTAGCAGCAGATA--CAGAATAAATACGGGCAATAATTAGG
AGCAGTTGAGGGGAGGAATC-GGGCTTATTTAGCACGCACGCCAGTTCGTCATCAAGCGGTCATTTACATCCACCGTCCT
CCTTTGCCTTCTTTTTCTTCGCGTCCTTCCCGTGCCATTGGGAAAGGGCCATGCCAAAAGGACACGGTGGGTGAAATTGC
CTCCCAGGATGAACACT----CTCGGTACTAATCCACACAAAAAATAGC--TAAAAGTGGAAATAAAATCTGAATGTCCG
AGTAATTTTCAGGAAAGTAGTTTGTGTTTTGTGTCCTTGATAGAGAAAACAAAATC------------------------
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>SNPs
SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------S------------------------------
-------S------------------------------------------------------------------------
-----------------------------S---S--------S-----------------SS--------S---------
---------------S-------S-------S------------------------------------------------
-----------------------------------------S--------------------------------------
------------------S-------------S------SSS-S----SSS------S----------------------
-------------------S----SSSSSSS---------------------------------------S---------
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---------------------------------------S----------------------------------------
----------S-----------S----S------S----------------S----------------------------
------------------------------------------------S-------------------------------
-----------------------------------------------------------------S--SS----------
------------------------------SSSSS---------------------------------------------
------------------------------------------------------------------------------S-
------------------------------S------------------S--S-S-SSSS--------------------
---------------------S------------------------------------------------------S---
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-----------------SSS------------------------------------------------------------
--------------------S-----------------------------------------------------------
-------------------S--------------------------------------------------------S---
------------------S-S-------------------------S---S-------------------------S---
-----------------------------------------S----S---------------------------------
------S-----------SSSSSSSSS
>forward_42
----------------------CGGCGTCCTCCTTAAGATCC--------------------------------------
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>reverse_1551
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------------------------------CTGTATGCACGTGTTCTGCA------------------------------
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