Multiple sequence alignment - TraesCS2A01G383100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G383100 chr2A 100.000 2651 0 0 1 2651 627617644 627614994 0.000000e+00 4896.0
1 TraesCS2A01G383100 chr2A 91.391 151 12 1 649 799 715471558 715471707 3.460000e-49 206.0
2 TraesCS2A01G383100 chr2A 89.888 89 6 2 1875 1960 278919347 278919435 7.760000e-21 111.0
3 TraesCS2A01G383100 chr2B 90.617 1556 82 27 819 2321 568659307 568657763 0.000000e+00 2006.0
4 TraesCS2A01G383100 chr2B 90.909 88 6 1 1875 1960 258639665 258639578 1.670000e-22 117.0
5 TraesCS2A01G383100 chr2B 92.424 66 5 0 524 589 568659469 568659404 7.810000e-16 95.3
6 TraesCS2A01G383100 chr2D 92.291 1362 58 24 819 2138 483838859 483837503 0.000000e+00 1890.0
7 TraesCS2A01G383100 chr2D 90.426 188 11 1 2141 2321 483837466 483837279 9.480000e-60 241.0
8 TraesCS2A01G383100 chr2D 85.841 226 20 6 2404 2621 483837260 483837039 2.050000e-56 230.0
9 TraesCS2A01G383100 chr2D 83.051 177 22 8 203 377 37019134 37018964 1.270000e-33 154.0
10 TraesCS2A01G383100 chr2D 97.222 36 1 0 554 589 483838989 483838954 7.920000e-06 62.1
11 TraesCS2A01G383100 chr1A 78.378 407 62 15 97 487 390892317 390892713 9.480000e-60 241.0
12 TraesCS2A01G383100 chr1A 89.610 154 12 4 649 799 593410189 593410037 2.690000e-45 193.0
13 TraesCS2A01G383100 chr1A 89.103 156 11 3 649 799 494886897 494887051 3.480000e-44 189.0
14 TraesCS2A01G383100 chr1A 82.703 185 26 6 186 365 390892480 390892663 2.730000e-35 159.0
15 TraesCS2A01G383100 chr1A 87.500 96 10 1 1870 1963 544467015 544466920 2.790000e-20 110.0
16 TraesCS2A01G383100 chr3A 89.571 163 9 5 642 799 561038544 561038703 1.610000e-47 200.0
17 TraesCS2A01G383100 chr3A 89.474 152 13 3 649 799 71236526 71236675 3.480000e-44 189.0
18 TraesCS2A01G383100 chrUn 90.604 149 12 2 652 799 474962344 474962491 2.080000e-46 196.0
19 TraesCS2A01G383100 chrUn 80.247 162 30 2 226 385 393616412 393616251 1.290000e-23 121.0
20 TraesCS2A01G383100 chrUn 79.630 162 31 2 226 385 379654875 379654714 6.000000e-22 115.0
21 TraesCS2A01G383100 chr6A 90.196 153 9 4 652 799 38404620 38404469 7.490000e-46 195.0
22 TraesCS2A01G383100 chr1D 90.066 151 14 1 649 799 42271587 42271736 7.490000e-46 195.0
23 TraesCS2A01G383100 chr1D 90.426 94 9 0 1870 1963 449276398 449276305 9.960000e-25 124.0
24 TraesCS2A01G383100 chr5A 90.000 150 14 1 650 799 64373456 64373308 2.690000e-45 193.0
25 TraesCS2A01G383100 chr5A 91.765 85 7 0 1876 1960 370102518 370102434 4.640000e-23 119.0
26 TraesCS2A01G383100 chr3D 76.250 320 59 13 203 512 432216488 432216176 1.270000e-33 154.0
27 TraesCS2A01G383100 chr3D 75.958 287 38 22 234 512 526211657 526211394 4.640000e-23 119.0
28 TraesCS2A01G383100 chr1B 74.932 367 59 26 186 529 640784444 640784088 1.280000e-28 137.0
29 TraesCS2A01G383100 chr6B 89.216 102 9 2 1866 1965 680933320 680933219 2.770000e-25 126.0
30 TraesCS2A01G383100 chr4B 76.557 273 39 19 215 472 417534150 417533888 2.770000e-25 126.0
31 TraesCS2A01G383100 chr4A 90.323 93 9 0 1876 1968 472961343 472961251 3.580000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G383100 chr2A 627614994 627617644 2650 True 4896.000 4896 100.0000 1 2651 1 chr2A.!!$R1 2650
1 TraesCS2A01G383100 chr2B 568657763 568659469 1706 True 1050.650 2006 91.5205 524 2321 2 chr2B.!!$R2 1797
2 TraesCS2A01G383100 chr2D 483837039 483838989 1950 True 605.775 1890 91.4450 554 2621 4 chr2D.!!$R2 2067

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
29 30 0.106335 CTTCAGCATCGAGGCAGGAT 59.894 55.0 25.38 0.00 35.83 3.24 F
30 31 0.179065 TTCAGCATCGAGGCAGGATG 60.179 55.0 25.38 13.62 43.23 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1210 1249 0.676466 TGGTTGATGTCCATGACGGC 60.676 55.0 0.0 0.0 34.95 5.68 R
1965 2019 0.679640 CACTCCGGGGCAAAGCATTA 60.680 55.0 0.0 0.0 0.00 1.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.926250 AACCTGCCACCTTCAGCA 59.074 55.556 0.00 0.00 37.46 4.41
18 19 1.462035 AACCTGCCACCTTCAGCAT 59.538 52.632 0.00 0.00 38.56 3.79
19 20 0.610232 AACCTGCCACCTTCAGCATC 60.610 55.000 0.00 0.00 38.56 3.91
20 21 2.110967 CCTGCCACCTTCAGCATCG 61.111 63.158 0.00 0.00 38.56 3.84
21 22 1.078918 CTGCCACCTTCAGCATCGA 60.079 57.895 0.00 0.00 38.56 3.59
22 23 1.078918 TGCCACCTTCAGCATCGAG 60.079 57.895 0.00 0.00 33.08 4.04
23 24 1.817099 GCCACCTTCAGCATCGAGG 60.817 63.158 0.00 0.00 36.62 4.63
24 25 1.817099 CCACCTTCAGCATCGAGGC 60.817 63.158 15.45 15.45 33.78 4.70
25 26 1.078918 CACCTTCAGCATCGAGGCA 60.079 57.895 25.38 0.44 33.78 4.75
26 27 1.088340 CACCTTCAGCATCGAGGCAG 61.088 60.000 25.38 17.07 33.78 4.85
27 28 1.523258 CCTTCAGCATCGAGGCAGG 60.523 63.158 25.38 18.07 35.83 4.85
28 29 1.519246 CTTCAGCATCGAGGCAGGA 59.481 57.895 25.38 17.88 35.83 3.86
29 30 0.106335 CTTCAGCATCGAGGCAGGAT 59.894 55.000 25.38 0.00 35.83 3.24
30 31 0.179065 TTCAGCATCGAGGCAGGATG 60.179 55.000 25.38 13.62 43.23 3.51
49 50 3.344064 CAATAACCATTGCGCCACC 57.656 52.632 4.18 0.00 35.44 4.61
50 51 0.817013 CAATAACCATTGCGCCACCT 59.183 50.000 4.18 0.00 35.44 4.00
51 52 1.102978 AATAACCATTGCGCCACCTC 58.897 50.000 4.18 0.00 0.00 3.85
52 53 0.255890 ATAACCATTGCGCCACCTCT 59.744 50.000 4.18 0.00 0.00 3.69
53 54 0.392461 TAACCATTGCGCCACCTCTC 60.392 55.000 4.18 0.00 0.00 3.20
54 55 2.825836 CCATTGCGCCACCTCTCC 60.826 66.667 4.18 0.00 0.00 3.71
55 56 2.825836 CATTGCGCCACCTCTCCC 60.826 66.667 4.18 0.00 0.00 4.30
56 57 3.329889 ATTGCGCCACCTCTCCCA 61.330 61.111 4.18 0.00 0.00 4.37
57 58 3.335356 ATTGCGCCACCTCTCCCAG 62.335 63.158 4.18 0.00 0.00 4.45
59 60 4.767255 GCGCCACCTCTCCCAGTG 62.767 72.222 0.00 0.00 0.00 3.66
60 61 3.314331 CGCCACCTCTCCCAGTGT 61.314 66.667 0.00 0.00 31.88 3.55
61 62 2.348998 GCCACCTCTCCCAGTGTG 59.651 66.667 0.00 0.00 31.88 3.82
62 63 2.217038 GCCACCTCTCCCAGTGTGA 61.217 63.158 0.00 0.00 31.88 3.58
63 64 1.557269 GCCACCTCTCCCAGTGTGAT 61.557 60.000 0.00 0.00 31.88 3.06
64 65 0.539051 CCACCTCTCCCAGTGTGATC 59.461 60.000 0.00 0.00 31.88 2.92
65 66 1.269958 CACCTCTCCCAGTGTGATCA 58.730 55.000 0.00 0.00 0.00 2.92
66 67 1.206610 CACCTCTCCCAGTGTGATCAG 59.793 57.143 0.00 0.00 0.00 2.90
67 68 1.203237 ACCTCTCCCAGTGTGATCAGT 60.203 52.381 0.00 0.00 0.00 3.41
68 69 1.905215 CCTCTCCCAGTGTGATCAGTT 59.095 52.381 0.00 0.00 0.00 3.16
69 70 3.099905 CCTCTCCCAGTGTGATCAGTTA 58.900 50.000 0.00 0.00 0.00 2.24
70 71 3.118956 CCTCTCCCAGTGTGATCAGTTAC 60.119 52.174 0.00 0.00 0.00 2.50
71 72 3.506398 TCTCCCAGTGTGATCAGTTACA 58.494 45.455 0.00 0.00 0.00 2.41
72 73 4.096681 TCTCCCAGTGTGATCAGTTACAT 58.903 43.478 0.00 0.00 0.00 2.29
73 74 4.160439 TCTCCCAGTGTGATCAGTTACATC 59.840 45.833 0.00 0.00 0.00 3.06
74 75 3.119137 TCCCAGTGTGATCAGTTACATCG 60.119 47.826 0.00 0.00 0.00 3.84
75 76 3.368427 CCCAGTGTGATCAGTTACATCGT 60.368 47.826 0.00 0.00 0.00 3.73
76 77 4.245660 CCAGTGTGATCAGTTACATCGTT 58.754 43.478 0.00 0.00 0.00 3.85
77 78 4.690748 CCAGTGTGATCAGTTACATCGTTT 59.309 41.667 0.00 0.00 0.00 3.60
78 79 5.867174 CCAGTGTGATCAGTTACATCGTTTA 59.133 40.000 0.00 0.00 0.00 2.01
79 80 6.535150 CCAGTGTGATCAGTTACATCGTTTAT 59.465 38.462 0.00 0.00 0.00 1.40
80 81 7.394099 CAGTGTGATCAGTTACATCGTTTATG 58.606 38.462 0.00 0.00 41.74 1.90
81 82 6.036083 AGTGTGATCAGTTACATCGTTTATGC 59.964 38.462 0.00 0.00 39.39 3.14
82 83 5.293324 TGTGATCAGTTACATCGTTTATGCC 59.707 40.000 0.00 0.00 39.39 4.40
83 84 5.293324 GTGATCAGTTACATCGTTTATGCCA 59.707 40.000 0.00 0.00 39.39 4.92
84 85 6.017934 GTGATCAGTTACATCGTTTATGCCAT 60.018 38.462 0.00 0.00 39.39 4.40
85 86 6.542005 TGATCAGTTACATCGTTTATGCCATT 59.458 34.615 0.00 0.00 39.39 3.16
86 87 6.358118 TCAGTTACATCGTTTATGCCATTC 57.642 37.500 0.00 0.00 39.39 2.67
87 88 5.006261 TCAGTTACATCGTTTATGCCATTCG 59.994 40.000 0.00 0.00 39.39 3.34
88 89 4.873827 AGTTACATCGTTTATGCCATTCGT 59.126 37.500 0.00 0.00 39.39 3.85
89 90 5.353123 AGTTACATCGTTTATGCCATTCGTT 59.647 36.000 0.00 0.00 39.39 3.85
90 91 4.273005 ACATCGTTTATGCCATTCGTTC 57.727 40.909 0.00 0.00 39.39 3.95
91 92 3.938963 ACATCGTTTATGCCATTCGTTCT 59.061 39.130 0.00 0.00 39.39 3.01
92 93 4.394920 ACATCGTTTATGCCATTCGTTCTT 59.605 37.500 0.00 0.00 39.39 2.52
93 94 4.593597 TCGTTTATGCCATTCGTTCTTC 57.406 40.909 0.00 0.00 0.00 2.87
94 95 3.372822 TCGTTTATGCCATTCGTTCTTCC 59.627 43.478 0.00 0.00 0.00 3.46
95 96 3.680789 GTTTATGCCATTCGTTCTTCCG 58.319 45.455 0.00 0.00 0.00 4.30
96 97 2.684001 TATGCCATTCGTTCTTCCGT 57.316 45.000 0.00 0.00 0.00 4.69
97 98 1.369625 ATGCCATTCGTTCTTCCGTC 58.630 50.000 0.00 0.00 0.00 4.79
98 99 0.320374 TGCCATTCGTTCTTCCGTCT 59.680 50.000 0.00 0.00 0.00 4.18
99 100 1.270625 TGCCATTCGTTCTTCCGTCTT 60.271 47.619 0.00 0.00 0.00 3.01
100 101 1.804748 GCCATTCGTTCTTCCGTCTTT 59.195 47.619 0.00 0.00 0.00 2.52
101 102 2.159693 GCCATTCGTTCTTCCGTCTTTC 60.160 50.000 0.00 0.00 0.00 2.62
102 103 2.415512 CCATTCGTTCTTCCGTCTTTCC 59.584 50.000 0.00 0.00 0.00 3.13
103 104 3.326747 CATTCGTTCTTCCGTCTTTCCT 58.673 45.455 0.00 0.00 0.00 3.36
104 105 3.464111 TTCGTTCTTCCGTCTTTCCTT 57.536 42.857 0.00 0.00 0.00 3.36
105 106 3.464111 TCGTTCTTCCGTCTTTCCTTT 57.536 42.857 0.00 0.00 0.00 3.11
106 107 3.800531 TCGTTCTTCCGTCTTTCCTTTT 58.199 40.909 0.00 0.00 0.00 2.27
107 108 4.193865 TCGTTCTTCCGTCTTTCCTTTTT 58.806 39.130 0.00 0.00 0.00 1.94
108 109 4.271776 TCGTTCTTCCGTCTTTCCTTTTTC 59.728 41.667 0.00 0.00 0.00 2.29
109 110 4.554134 CGTTCTTCCGTCTTTCCTTTTTCC 60.554 45.833 0.00 0.00 0.00 3.13
110 111 3.483421 TCTTCCGTCTTTCCTTTTTCCC 58.517 45.455 0.00 0.00 0.00 3.97
111 112 3.137728 TCTTCCGTCTTTCCTTTTTCCCT 59.862 43.478 0.00 0.00 0.00 4.20
112 113 2.858745 TCCGTCTTTCCTTTTTCCCTG 58.141 47.619 0.00 0.00 0.00 4.45
113 114 2.173996 TCCGTCTTTCCTTTTTCCCTGT 59.826 45.455 0.00 0.00 0.00 4.00
114 115 2.956333 CCGTCTTTCCTTTTTCCCTGTT 59.044 45.455 0.00 0.00 0.00 3.16
115 116 3.383505 CCGTCTTTCCTTTTTCCCTGTTT 59.616 43.478 0.00 0.00 0.00 2.83
116 117 4.142026 CCGTCTTTCCTTTTTCCCTGTTTT 60.142 41.667 0.00 0.00 0.00 2.43
117 118 5.041287 CGTCTTTCCTTTTTCCCTGTTTTC 58.959 41.667 0.00 0.00 0.00 2.29
118 119 5.393678 CGTCTTTCCTTTTTCCCTGTTTTCA 60.394 40.000 0.00 0.00 0.00 2.69
119 120 6.582636 GTCTTTCCTTTTTCCCTGTTTTCAT 58.417 36.000 0.00 0.00 0.00 2.57
120 121 7.047891 GTCTTTCCTTTTTCCCTGTTTTCATT 58.952 34.615 0.00 0.00 0.00 2.57
121 122 7.552687 GTCTTTCCTTTTTCCCTGTTTTCATTT 59.447 33.333 0.00 0.00 0.00 2.32
122 123 8.106462 TCTTTCCTTTTTCCCTGTTTTCATTTT 58.894 29.630 0.00 0.00 0.00 1.82
123 124 8.642935 TTTCCTTTTTCCCTGTTTTCATTTTT 57.357 26.923 0.00 0.00 0.00 1.94
157 158 9.801873 TTCGAGAATTTTTCTTTTTCTTCATGT 57.198 25.926 0.00 0.00 40.87 3.21
158 159 9.801873 TCGAGAATTTTTCTTTTTCTTCATGTT 57.198 25.926 0.00 0.00 40.87 2.71
182 183 7.804843 TTTTTCTGCAAAATGGATGAACATT 57.195 28.000 0.00 0.00 42.56 2.71
261 262 9.489393 TCGATGAACTTATTTTCGAATTGAATG 57.511 29.630 0.00 0.00 36.05 2.67
262 263 9.489393 CGATGAACTTATTTTCGAATTGAATGA 57.511 29.630 0.00 0.00 36.22 2.57
347 348 9.920826 GAACTTTCTTTTCAAATTTGATGAACC 57.079 29.630 21.10 10.75 36.57 3.62
348 349 9.671279 AACTTTCTTTTCAAATTTGATGAACCT 57.329 25.926 21.10 10.24 36.57 3.50
349 350 9.671279 ACTTTCTTTTCAAATTTGATGAACCTT 57.329 25.926 21.10 9.71 36.57 3.50
363 364 9.571810 TTTGATGAACCTTATTCAAATTCGATG 57.428 29.630 0.00 0.00 34.20 3.84
364 365 8.504812 TGATGAACCTTATTCAAATTCGATGA 57.495 30.769 0.00 0.00 31.55 2.92
365 366 8.615211 TGATGAACCTTATTCAAATTCGATGAG 58.385 33.333 0.00 0.00 31.55 2.90
366 367 6.785191 TGAACCTTATTCAAATTCGATGAGC 58.215 36.000 0.00 0.00 0.00 4.26
367 368 6.374053 TGAACCTTATTCAAATTCGATGAGCA 59.626 34.615 0.00 0.00 0.00 4.26
368 369 6.369059 ACCTTATTCAAATTCGATGAGCAG 57.631 37.500 0.00 0.00 0.00 4.24
369 370 5.882557 ACCTTATTCAAATTCGATGAGCAGT 59.117 36.000 0.00 0.00 0.00 4.40
370 371 6.375455 ACCTTATTCAAATTCGATGAGCAGTT 59.625 34.615 0.00 0.00 0.00 3.16
371 372 7.094205 ACCTTATTCAAATTCGATGAGCAGTTT 60.094 33.333 0.00 0.00 0.00 2.66
372 373 7.756722 CCTTATTCAAATTCGATGAGCAGTTTT 59.243 33.333 0.00 0.00 0.00 2.43
373 374 8.673626 TTATTCAAATTCGATGAGCAGTTTTC 57.326 30.769 0.00 0.00 0.00 2.29
374 375 5.687770 TCAAATTCGATGAGCAGTTTTCA 57.312 34.783 0.00 0.00 0.00 2.69
375 376 6.070897 TCAAATTCGATGAGCAGTTTTCAA 57.929 33.333 0.00 0.00 0.00 2.69
376 377 6.502652 TCAAATTCGATGAGCAGTTTTCAAA 58.497 32.000 0.00 0.00 0.00 2.69
377 378 7.147312 TCAAATTCGATGAGCAGTTTTCAAAT 58.853 30.769 0.00 0.00 0.00 2.32
378 379 7.326789 TCAAATTCGATGAGCAGTTTTCAAATC 59.673 33.333 0.00 0.00 0.00 2.17
379 380 4.685169 TCGATGAGCAGTTTTCAAATCC 57.315 40.909 0.00 0.00 0.00 3.01
380 381 3.125146 TCGATGAGCAGTTTTCAAATCCG 59.875 43.478 0.00 0.00 0.00 4.18
381 382 3.125146 CGATGAGCAGTTTTCAAATCCGA 59.875 43.478 0.00 0.00 0.00 4.55
382 383 4.201851 CGATGAGCAGTTTTCAAATCCGAT 60.202 41.667 0.00 0.00 0.00 4.18
383 384 4.424061 TGAGCAGTTTTCAAATCCGATG 57.576 40.909 0.00 0.00 0.00 3.84
384 385 4.071423 TGAGCAGTTTTCAAATCCGATGA 58.929 39.130 0.00 0.00 0.00 2.92
385 386 4.701651 TGAGCAGTTTTCAAATCCGATGAT 59.298 37.500 0.00 0.00 0.00 2.45
386 387 5.183713 TGAGCAGTTTTCAAATCCGATGATT 59.816 36.000 0.00 0.00 43.08 2.57
388 389 6.458210 AGCAGTTTTCAAATCCGATGATTTT 58.542 32.000 0.00 0.00 46.57 1.82
389 390 6.930722 AGCAGTTTTCAAATCCGATGATTTTT 59.069 30.769 0.00 0.00 46.57 1.94
390 391 7.116805 AGCAGTTTTCAAATCCGATGATTTTTC 59.883 33.333 0.00 0.00 46.57 2.29
391 392 7.622048 GCAGTTTTCAAATCCGATGATTTTTCC 60.622 37.037 0.00 0.00 46.57 3.13
392 393 7.384660 CAGTTTTCAAATCCGATGATTTTTCCA 59.615 33.333 0.00 0.00 46.57 3.53
393 394 7.930865 AGTTTTCAAATCCGATGATTTTTCCAA 59.069 29.630 0.00 0.00 46.57 3.53
394 395 8.555361 GTTTTCAAATCCGATGATTTTTCCAAA 58.445 29.630 0.00 0.00 46.57 3.28
395 396 8.845413 TTTCAAATCCGATGATTTTTCCAAAT 57.155 26.923 0.00 0.00 46.57 2.32
396 397 8.845413 TTCAAATCCGATGATTTTTCCAAATT 57.155 26.923 0.00 0.00 46.57 1.82
397 398 8.845413 TCAAATCCGATGATTTTTCCAAATTT 57.155 26.923 0.00 0.00 46.57 1.82
398 399 8.719648 TCAAATCCGATGATTTTTCCAAATTTG 58.280 29.630 11.40 11.40 46.57 2.32
399 400 8.719648 CAAATCCGATGATTTTTCCAAATTTGA 58.280 29.630 19.86 3.14 46.57 2.69
400 401 8.845413 AATCCGATGATTTTTCCAAATTTGAA 57.155 26.923 19.86 9.02 38.00 2.69
401 402 7.650834 TCCGATGATTTTTCCAAATTTGAAC 57.349 32.000 19.86 0.00 32.35 3.18
402 403 7.441017 TCCGATGATTTTTCCAAATTTGAACT 58.559 30.769 19.86 0.46 32.35 3.01
403 404 7.930865 TCCGATGATTTTTCCAAATTTGAACTT 59.069 29.630 19.86 0.00 32.35 2.66
404 405 8.558700 CCGATGATTTTTCCAAATTTGAACTTT 58.441 29.630 19.86 0.00 32.35 2.66
405 406 9.934190 CGATGATTTTTCCAAATTTGAACTTTT 57.066 25.926 19.86 0.40 32.35 2.27
419 420 6.727824 TTGAACTTTTTCAATTTTGGCGAA 57.272 29.167 0.00 0.00 45.08 4.70
420 421 6.100792 TGAACTTTTTCAATTTTGGCGAAC 57.899 33.333 0.00 0.00 38.87 3.95
421 422 5.872070 TGAACTTTTTCAATTTTGGCGAACT 59.128 32.000 0.00 0.00 38.87 3.01
422 423 6.370166 TGAACTTTTTCAATTTTGGCGAACTT 59.630 30.769 0.00 0.00 38.87 2.66
423 424 6.735678 ACTTTTTCAATTTTGGCGAACTTT 57.264 29.167 0.00 0.00 0.00 2.66
424 425 7.139896 ACTTTTTCAATTTTGGCGAACTTTT 57.860 28.000 0.00 0.00 0.00 2.27
425 426 7.589395 ACTTTTTCAATTTTGGCGAACTTTTT 58.411 26.923 0.00 0.00 0.00 1.94
446 447 7.769272 TTTTTCAAATGCGATGAACTTTCTT 57.231 28.000 0.00 0.00 36.57 2.52
447 448 7.769272 TTTTCAAATGCGATGAACTTTCTTT 57.231 28.000 0.00 0.00 36.57 2.52
448 449 7.769272 TTTCAAATGCGATGAACTTTCTTTT 57.231 28.000 0.00 0.00 36.57 2.27
449 450 6.991485 TCAAATGCGATGAACTTTCTTTTC 57.009 33.333 0.00 0.00 0.00 2.29
450 451 6.502652 TCAAATGCGATGAACTTTCTTTTCA 58.497 32.000 0.00 0.00 37.38 2.69
451 452 6.977502 TCAAATGCGATGAACTTTCTTTTCAA 59.022 30.769 0.00 0.00 36.57 2.69
452 453 7.490725 TCAAATGCGATGAACTTTCTTTTCAAA 59.509 29.630 0.00 0.00 36.57 2.69
453 454 7.951530 AATGCGATGAACTTTCTTTTCAAAT 57.048 28.000 0.00 0.00 36.57 2.32
454 455 7.951530 ATGCGATGAACTTTCTTTTCAAATT 57.048 28.000 0.00 0.00 36.57 1.82
455 456 7.769272 TGCGATGAACTTTCTTTTCAAATTT 57.231 28.000 0.00 0.00 36.57 1.82
456 457 7.840489 TGCGATGAACTTTCTTTTCAAATTTC 58.160 30.769 0.00 0.00 36.57 2.17
457 458 7.490725 TGCGATGAACTTTCTTTTCAAATTTCA 59.509 29.630 0.00 2.42 38.53 2.69
458 459 8.490355 GCGATGAACTTTCTTTTCAAATTTCAT 58.510 29.630 9.84 9.84 43.20 2.57
459 460 9.787626 CGATGAACTTTCTTTTCAAATTTCATG 57.212 29.630 13.22 0.00 41.81 3.07
481 482 9.467258 TCATGAACTTTCTCAAATTTGATGAAC 57.533 29.630 20.76 13.42 33.31 3.18
482 483 9.472361 CATGAACTTTCTCAAATTTGATGAACT 57.528 29.630 20.76 12.36 36.46 3.01
484 485 9.874205 TGAACTTTCTCAAATTTGATGAACTTT 57.126 25.926 20.76 17.59 36.46 2.66
584 585 1.463674 CCGTGCCAGGCTAAAAATCT 58.536 50.000 14.15 0.00 0.00 2.40
599 620 9.556030 GGCTAAAAATCTGTGTGTAGTATTTTC 57.444 33.333 0.00 0.00 30.61 2.29
604 625 2.339418 TGTGTGTAGTATTTTCGGGCG 58.661 47.619 0.00 0.00 0.00 6.13
610 631 3.611986 TGTAGTATTTTCGGGCGTTAACG 59.388 43.478 23.40 23.40 43.27 3.18
612 633 3.324993 AGTATTTTCGGGCGTTAACGAA 58.675 40.909 31.03 15.30 46.05 3.85
615 636 1.793258 TTTCGGGCGTTAACGAATCA 58.207 45.000 31.03 8.97 46.79 2.57
623 644 4.094442 GGGCGTTAACGAATCAAAGATTCT 59.906 41.667 31.03 3.34 43.02 2.40
635 656 3.084039 CAAAGATTCTTACAGGCTGGCA 58.916 45.455 20.34 2.88 0.00 4.92
645 666 7.710676 TCTTACAGGCTGGCATAAAAATAAA 57.289 32.000 20.34 0.00 0.00 1.40
647 668 8.250332 TCTTACAGGCTGGCATAAAAATAAAAG 58.750 33.333 20.34 3.65 0.00 2.27
649 670 6.768483 ACAGGCTGGCATAAAAATAAAAGTT 58.232 32.000 20.34 0.00 0.00 2.66
650 671 7.902087 ACAGGCTGGCATAAAAATAAAAGTTA 58.098 30.769 20.34 0.00 0.00 2.24
651 672 7.817478 ACAGGCTGGCATAAAAATAAAAGTTAC 59.183 33.333 20.34 0.00 0.00 2.50
653 674 8.034804 AGGCTGGCATAAAAATAAAAGTTACAG 58.965 33.333 3.38 0.00 0.00 2.74
654 675 7.817478 GGCTGGCATAAAAATAAAAGTTACAGT 59.183 33.333 0.00 0.00 0.00 3.55
655 676 9.203421 GCTGGCATAAAAATAAAAGTTACAGTT 57.797 29.630 0.00 0.00 0.00 3.16
670 691 9.946165 AAAGTTACAGTTTTACTAAAGCACATC 57.054 29.630 0.00 0.00 0.00 3.06
671 692 8.904099 AGTTACAGTTTTACTAAAGCACATCT 57.096 30.769 0.00 0.00 0.00 2.90
672 693 9.991906 AGTTACAGTTTTACTAAAGCACATCTA 57.008 29.630 0.00 0.00 0.00 1.98
676 697 9.155975 ACAGTTTTACTAAAGCACATCTAGATG 57.844 33.333 27.63 27.63 44.15 2.90
691 712 7.069852 CATCTAGATGTGCCATAAGTATTGC 57.930 40.000 22.42 0.00 34.23 3.56
692 713 6.173427 TCTAGATGTGCCATAAGTATTGCA 57.827 37.500 0.00 0.00 32.69 4.08
700 721 6.866010 TGCCATAAGTATTGCACATCTAAG 57.134 37.500 0.00 0.00 30.49 2.18
701 722 6.356556 TGCCATAAGTATTGCACATCTAAGT 58.643 36.000 0.00 0.00 30.49 2.24
702 723 6.483307 TGCCATAAGTATTGCACATCTAAGTC 59.517 38.462 0.00 0.00 30.49 3.01
703 724 6.708054 GCCATAAGTATTGCACATCTAAGTCT 59.292 38.462 0.00 0.00 0.00 3.24
704 725 7.227512 GCCATAAGTATTGCACATCTAAGTCTT 59.772 37.037 0.00 0.00 0.00 3.01
705 726 9.764363 CCATAAGTATTGCACATCTAAGTCTTA 57.236 33.333 0.00 0.00 0.00 2.10
709 730 8.879342 AGTATTGCACATCTAAGTCTTATGTC 57.121 34.615 0.00 0.00 31.60 3.06
710 731 8.478066 AGTATTGCACATCTAAGTCTTATGTCA 58.522 33.333 0.00 0.00 31.60 3.58
711 732 9.265901 GTATTGCACATCTAAGTCTTATGTCAT 57.734 33.333 0.00 0.00 31.60 3.06
712 733 8.743085 ATTGCACATCTAAGTCTTATGTCATT 57.257 30.769 0.00 0.00 31.60 2.57
713 734 8.565896 TTGCACATCTAAGTCTTATGTCATTT 57.434 30.769 0.00 0.00 31.60 2.32
714 735 7.977904 TGCACATCTAAGTCTTATGTCATTTG 58.022 34.615 0.00 0.00 31.60 2.32
715 736 7.823799 TGCACATCTAAGTCTTATGTCATTTGA 59.176 33.333 0.00 0.00 31.60 2.69
716 737 8.834465 GCACATCTAAGTCTTATGTCATTTGAT 58.166 33.333 0.00 0.00 31.60 2.57
724 745 8.635877 AGTCTTATGTCATTTGATCTTACGTC 57.364 34.615 0.00 0.00 0.00 4.34
725 746 7.432545 AGTCTTATGTCATTTGATCTTACGTCG 59.567 37.037 0.00 0.00 0.00 5.12
726 747 7.431376 GTCTTATGTCATTTGATCTTACGTCGA 59.569 37.037 0.00 0.00 0.00 4.20
727 748 7.644157 TCTTATGTCATTTGATCTTACGTCGAG 59.356 37.037 0.00 0.00 0.00 4.04
728 749 5.305139 TGTCATTTGATCTTACGTCGAGA 57.695 39.130 0.00 0.00 0.00 4.04
729 750 5.891451 TGTCATTTGATCTTACGTCGAGAT 58.109 37.500 12.62 12.62 36.60 2.75
730 751 6.330278 TGTCATTTGATCTTACGTCGAGATT 58.670 36.000 13.64 0.00 34.13 2.40
731 752 6.811665 TGTCATTTGATCTTACGTCGAGATTT 59.188 34.615 13.64 0.00 34.13 2.17
732 753 7.113658 GTCATTTGATCTTACGTCGAGATTTG 58.886 38.462 13.64 10.18 34.13 2.32
733 754 6.811665 TCATTTGATCTTACGTCGAGATTTGT 59.188 34.615 13.64 0.00 34.13 2.83
734 755 6.389622 TTTGATCTTACGTCGAGATTTGTG 57.610 37.500 13.64 0.00 34.13 3.33
735 756 5.055642 TGATCTTACGTCGAGATTTGTGT 57.944 39.130 13.64 0.00 34.13 3.72
736 757 4.857037 TGATCTTACGTCGAGATTTGTGTG 59.143 41.667 13.64 0.00 34.13 3.82
737 758 3.571571 TCTTACGTCGAGATTTGTGTGG 58.428 45.455 0.00 0.00 0.00 4.17
738 759 3.253921 TCTTACGTCGAGATTTGTGTGGA 59.746 43.478 0.00 0.00 0.00 4.02
739 760 2.743636 ACGTCGAGATTTGTGTGGAT 57.256 45.000 0.00 0.00 0.00 3.41
740 761 3.861276 ACGTCGAGATTTGTGTGGATA 57.139 42.857 0.00 0.00 0.00 2.59
741 762 4.386867 ACGTCGAGATTTGTGTGGATAT 57.613 40.909 0.00 0.00 0.00 1.63
742 763 4.755411 ACGTCGAGATTTGTGTGGATATT 58.245 39.130 0.00 0.00 0.00 1.28
743 764 5.175859 ACGTCGAGATTTGTGTGGATATTT 58.824 37.500 0.00 0.00 0.00 1.40
744 765 5.642063 ACGTCGAGATTTGTGTGGATATTTT 59.358 36.000 0.00 0.00 0.00 1.82
745 766 6.148811 ACGTCGAGATTTGTGTGGATATTTTT 59.851 34.615 0.00 0.00 0.00 1.94
746 767 6.682863 CGTCGAGATTTGTGTGGATATTTTTC 59.317 38.462 0.00 0.00 0.00 2.29
747 768 7.413000 CGTCGAGATTTGTGTGGATATTTTTCT 60.413 37.037 0.00 0.00 0.00 2.52
748 769 8.237267 GTCGAGATTTGTGTGGATATTTTTCTT 58.763 33.333 0.00 0.00 0.00 2.52
749 770 8.792633 TCGAGATTTGTGTGGATATTTTTCTTT 58.207 29.630 0.00 0.00 0.00 2.52
750 771 9.410556 CGAGATTTGTGTGGATATTTTTCTTTT 57.589 29.630 0.00 0.00 0.00 2.27
781 802 8.464770 TGCTTAATTCACTCAATTAAATGTGC 57.535 30.769 2.16 2.94 43.42 4.57
782 803 8.087136 TGCTTAATTCACTCAATTAAATGTGCA 58.913 29.630 7.09 7.09 43.42 4.57
783 804 8.924691 GCTTAATTCACTCAATTAAATGTGCAA 58.075 29.630 0.00 0.00 43.42 4.08
794 815 9.920133 TCAATTAAATGTGCAATAACTAAAGCA 57.080 25.926 0.00 0.00 34.10 3.91
802 823 6.135290 TGCAATAACTAAAGCACATCATCC 57.865 37.500 0.00 0.00 31.05 3.51
803 824 5.651576 TGCAATAACTAAAGCACATCATCCA 59.348 36.000 0.00 0.00 31.05 3.41
804 825 6.152492 TGCAATAACTAAAGCACATCATCCAA 59.848 34.615 0.00 0.00 31.05 3.53
805 826 7.147863 TGCAATAACTAAAGCACATCATCCAAT 60.148 33.333 0.00 0.00 31.05 3.16
806 827 7.380602 GCAATAACTAAAGCACATCATCCAATC 59.619 37.037 0.00 0.00 0.00 2.67
807 828 5.841957 AACTAAAGCACATCATCCAATCC 57.158 39.130 0.00 0.00 0.00 3.01
808 829 5.121380 ACTAAAGCACATCATCCAATCCT 57.879 39.130 0.00 0.00 0.00 3.24
809 830 4.885907 ACTAAAGCACATCATCCAATCCTG 59.114 41.667 0.00 0.00 0.00 3.86
810 831 3.657398 AAGCACATCATCCAATCCTGA 57.343 42.857 0.00 0.00 0.00 3.86
811 832 3.210232 AGCACATCATCCAATCCTGAG 57.790 47.619 0.00 0.00 0.00 3.35
812 833 2.775960 AGCACATCATCCAATCCTGAGA 59.224 45.455 0.00 0.00 0.00 3.27
813 834 3.394940 AGCACATCATCCAATCCTGAGAT 59.605 43.478 0.00 0.00 0.00 2.75
814 835 3.752222 GCACATCATCCAATCCTGAGATC 59.248 47.826 0.00 0.00 0.00 2.75
815 836 4.325119 CACATCATCCAATCCTGAGATCC 58.675 47.826 0.00 0.00 0.00 3.36
816 837 3.007723 ACATCATCCAATCCTGAGATCCG 59.992 47.826 0.00 0.00 0.00 4.18
817 838 2.962859 TCATCCAATCCTGAGATCCGA 58.037 47.619 0.00 0.00 0.00 4.55
892 913 2.764547 CCTCGTCCCTCTTCCCCC 60.765 72.222 0.00 0.00 0.00 5.40
903 924 1.306226 CTTCCCCCTCCTCGTTCCT 60.306 63.158 0.00 0.00 0.00 3.36
934 955 0.399233 CCCTCCTCCCCTCGATTTCT 60.399 60.000 0.00 0.00 0.00 2.52
973 1003 1.774217 TCCCCATCCCATACCCAGC 60.774 63.158 0.00 0.00 0.00 4.85
1266 1305 1.685820 CCACAGGTTCCCCTTCCTC 59.314 63.158 0.00 0.00 39.89 3.71
1281 1320 3.502356 CTTCCTCCTGGTAGATAGGGTC 58.498 54.545 0.00 0.00 35.96 4.46
1506 1545 2.354259 GTGAGATTCAGGAAGCCAGTG 58.646 52.381 0.00 0.00 0.00 3.66
1522 1561 1.802960 CAGTGATTGCTGGTGACACTC 59.197 52.381 5.39 0.00 39.33 3.51
1556 1595 4.760530 TGACCCTCACCAAATATCAGAG 57.239 45.455 0.00 0.00 0.00 3.35
1646 1685 1.412710 CCTCCTTATTAGCGCCACTGA 59.587 52.381 2.29 0.00 0.00 3.41
1647 1686 2.158957 CCTCCTTATTAGCGCCACTGAA 60.159 50.000 2.29 0.00 0.00 3.02
1651 1690 4.067896 CCTTATTAGCGCCACTGAATGAT 58.932 43.478 2.29 0.00 0.00 2.45
1669 1708 6.836007 TGAATGATCAGATCTACCTGTGTACT 59.164 38.462 11.83 0.00 35.71 2.73
1682 1721 5.273208 ACCTGTGTACTATGTGATCCTCTT 58.727 41.667 0.00 0.00 0.00 2.85
1691 1730 7.296628 ACTATGTGATCCTCTTACAAGATCC 57.703 40.000 0.00 0.00 36.41 3.36
1699 1738 6.636562 TCCTCTTACAAGATCCGATTAGAC 57.363 41.667 0.00 0.00 33.93 2.59
1702 1741 6.392625 TCTTACAAGATCCGATTAGACTGG 57.607 41.667 0.00 0.00 0.00 4.00
1754 1804 5.048782 TGAACTTACAACATGTGAGGCAATC 60.049 40.000 0.00 0.00 38.18 2.67
1762 1812 6.435277 ACAACATGTGAGGCAATCTTATCTTT 59.565 34.615 0.00 0.00 0.00 2.52
1763 1813 7.039504 ACAACATGTGAGGCAATCTTATCTTTT 60.040 33.333 0.00 0.00 0.00 2.27
1764 1814 7.472334 ACATGTGAGGCAATCTTATCTTTTT 57.528 32.000 0.00 0.00 0.00 1.94
1765 1815 8.579850 ACATGTGAGGCAATCTTATCTTTTTA 57.420 30.769 0.00 0.00 0.00 1.52
1766 1816 8.462016 ACATGTGAGGCAATCTTATCTTTTTAC 58.538 33.333 0.00 0.00 0.00 2.01
1767 1817 7.994425 TGTGAGGCAATCTTATCTTTTTACA 57.006 32.000 0.00 0.00 0.00 2.41
1769 1819 8.677300 TGTGAGGCAATCTTATCTTTTTACATC 58.323 33.333 0.00 0.00 0.00 3.06
1770 1820 8.677300 GTGAGGCAATCTTATCTTTTTACATCA 58.323 33.333 0.00 0.00 0.00 3.07
1863 1917 6.515272 AGTTTGGTGGAATAACTATGCTTG 57.485 37.500 0.00 0.00 30.75 4.01
1956 2010 3.975312 TCTTATAATTTGGGGCGGAGGTA 59.025 43.478 0.00 0.00 0.00 3.08
1965 2019 1.211212 GGGGCGGAGGTAGTACATTTT 59.789 52.381 2.06 0.00 0.00 1.82
1978 2032 5.084818 AGTACATTTTAATGCTTTGCCCC 57.915 39.130 2.46 0.00 40.04 5.80
1980 2034 2.278854 CATTTTAATGCTTTGCCCCGG 58.721 47.619 0.00 0.00 0.00 5.73
2001 2067 3.181469 GGAGTGACGCCATTATCAAGGTA 60.181 47.826 0.00 0.00 0.00 3.08
2010 2076 7.903145 ACGCCATTATCAAGGTATTACATCTA 58.097 34.615 0.00 0.00 0.00 1.98
2017 2083 7.676683 ATCAAGGTATTACATCTACCACAGT 57.323 36.000 2.62 0.00 40.99 3.55
2035 2101 8.006298 ACCACAGTGAATTCAGACAATTTAAA 57.994 30.769 8.80 0.00 0.00 1.52
2053 2119 7.706100 ATTTAAATTTTCTTGGCCATGCATT 57.294 28.000 6.09 5.54 0.00 3.56
2094 2160 7.112452 ACTATCTGTGCAACTCATGTATACA 57.888 36.000 8.27 8.27 38.04 2.29
2096 2162 6.668541 ATCTGTGCAACTCATGTATACAAC 57.331 37.500 10.14 1.42 38.04 3.32
2107 2174 2.623535 TGTATACAACCGTGGATGCAC 58.376 47.619 7.39 7.39 35.91 4.57
2110 2177 1.231221 TACAACCGTGGATGCACAAC 58.769 50.000 18.05 0.00 0.00 3.32
2114 2181 2.024176 ACCGTGGATGCACAACTATC 57.976 50.000 18.05 0.00 0.00 2.08
2130 2197 8.537223 GCACAACTATCATTTATGCAGATTTTG 58.463 33.333 0.00 0.00 0.00 2.44
2132 2199 8.970020 ACAACTATCATTTATGCAGATTTTGGA 58.030 29.630 0.00 0.00 0.00 3.53
2168 2270 6.658831 AGATGATTTCACACGTTAAGTTGTG 58.341 36.000 9.28 9.28 41.81 3.33
2235 2344 9.173939 GCATATCTATTACTGCACAAAATTCAC 57.826 33.333 0.00 0.00 34.77 3.18
2275 2384 4.823157 TGAACTTTGATTGGGATTGCATG 58.177 39.130 0.00 0.00 0.00 4.06
2317 2426 0.672401 TAGGTAAGCCGTGCAGCAAC 60.672 55.000 0.00 0.00 40.50 4.17
2321 2430 2.674563 TAAGCCGTGCAGCAACTGGT 62.675 55.000 0.00 0.00 34.23 4.00
2322 2431 2.668212 GCCGTGCAGCAACTGGTA 60.668 61.111 0.00 0.00 31.21 3.25
2323 2432 2.040544 GCCGTGCAGCAACTGGTAT 61.041 57.895 0.00 0.00 31.21 2.73
2325 2434 1.006832 CCGTGCAGCAACTGGTATAC 58.993 55.000 0.00 0.00 31.21 1.47
2326 2435 0.645355 CGTGCAGCAACTGGTATACG 59.355 55.000 0.00 0.00 31.21 3.06
2327 2436 1.722011 GTGCAGCAACTGGTATACGT 58.278 50.000 0.00 0.00 31.21 3.57
2328 2437 2.073816 GTGCAGCAACTGGTATACGTT 58.926 47.619 0.00 0.00 31.21 3.99
2329 2438 2.073056 TGCAGCAACTGGTATACGTTG 58.927 47.619 15.41 15.41 42.47 4.10
2330 2439 2.289133 TGCAGCAACTGGTATACGTTGA 60.289 45.455 21.02 4.18 42.24 3.18
2331 2440 2.936498 GCAGCAACTGGTATACGTTGAT 59.064 45.455 21.02 14.99 42.24 2.57
2334 2443 5.236478 GCAGCAACTGGTATACGTTGATAAT 59.764 40.000 21.02 6.57 42.24 1.28
2336 2445 7.117812 GCAGCAACTGGTATACGTTGATAATAT 59.882 37.037 21.02 3.56 42.24 1.28
2365 2474 8.418597 ACTACCATATGTACACCTTATACCTG 57.581 38.462 0.00 0.00 0.00 4.00
2366 2475 8.008922 ACTACCATATGTACACCTTATACCTGT 58.991 37.037 0.00 0.00 0.00 4.00
2367 2476 7.299246 ACCATATGTACACCTTATACCTGTC 57.701 40.000 0.00 0.00 0.00 3.51
2368 2477 6.269307 ACCATATGTACACCTTATACCTGTCC 59.731 42.308 0.00 0.00 0.00 4.02
2369 2478 6.269077 CCATATGTACACCTTATACCTGTCCA 59.731 42.308 0.00 0.00 0.00 4.02
2370 2479 7.202056 CCATATGTACACCTTATACCTGTCCAA 60.202 40.741 0.00 0.00 0.00 3.53
2371 2480 5.410355 TGTACACCTTATACCTGTCCAAC 57.590 43.478 0.00 0.00 0.00 3.77
2372 2481 4.839550 TGTACACCTTATACCTGTCCAACA 59.160 41.667 0.00 0.00 0.00 3.33
2373 2482 4.986054 ACACCTTATACCTGTCCAACAA 57.014 40.909 0.00 0.00 0.00 2.83
2374 2483 4.648651 ACACCTTATACCTGTCCAACAAC 58.351 43.478 0.00 0.00 0.00 3.32
2375 2484 4.349930 ACACCTTATACCTGTCCAACAACT 59.650 41.667 0.00 0.00 0.00 3.16
2376 2485 4.695455 CACCTTATACCTGTCCAACAACTG 59.305 45.833 0.00 0.00 0.00 3.16
2377 2486 3.689649 CCTTATACCTGTCCAACAACTGC 59.310 47.826 0.00 0.00 0.00 4.40
2378 2487 2.949177 ATACCTGTCCAACAACTGCA 57.051 45.000 0.00 0.00 0.00 4.41
2379 2488 2.719531 TACCTGTCCAACAACTGCAA 57.280 45.000 0.00 0.00 0.00 4.08
2380 2489 2.071778 ACCTGTCCAACAACTGCAAT 57.928 45.000 0.00 0.00 0.00 3.56
2381 2490 3.222173 ACCTGTCCAACAACTGCAATA 57.778 42.857 0.00 0.00 0.00 1.90
2382 2491 3.766545 ACCTGTCCAACAACTGCAATAT 58.233 40.909 0.00 0.00 0.00 1.28
2383 2492 4.151883 ACCTGTCCAACAACTGCAATATT 58.848 39.130 0.00 0.00 0.00 1.28
2384 2493 4.588528 ACCTGTCCAACAACTGCAATATTT 59.411 37.500 0.00 0.00 0.00 1.40
2385 2494 5.070313 ACCTGTCCAACAACTGCAATATTTT 59.930 36.000 0.00 0.00 0.00 1.82
2386 2495 5.990996 CCTGTCCAACAACTGCAATATTTTT 59.009 36.000 0.00 0.00 0.00 1.94
2409 2518 3.007182 TGAAACGTGGTCCCTTAAGGTAG 59.993 47.826 20.22 6.11 36.75 3.18
2422 2531 8.420222 GTCCCTTAAGGTAGAATAGAGTTTACC 58.580 40.741 20.22 0.00 36.62 2.85
2430 2539 8.985922 AGGTAGAATAGAGTTTACCGGTTAATT 58.014 33.333 15.04 6.76 40.34 1.40
2461 2570 2.690173 TGGCAAAAACCGATACAACG 57.310 45.000 0.00 0.00 0.00 4.10
2468 2577 0.952010 AACCGATACAACGTGCCCAC 60.952 55.000 0.00 0.00 0.00 4.61
2513 2622 0.823356 GCACCAACCAGACCACACAT 60.823 55.000 0.00 0.00 0.00 3.21
2517 2629 1.228552 AACCAGACCACACATGCCC 60.229 57.895 0.00 0.00 0.00 5.36
2529 2641 1.064906 CACATGCCCTGAAGAGGATGT 60.065 52.381 0.00 0.00 42.93 3.06
2533 2645 0.250513 GCCCTGAAGAGGATGTCGTT 59.749 55.000 0.00 0.00 42.93 3.85
2540 2652 7.838523 CCTGAAGAGGATGTCGTTGAGACTG 62.839 52.000 0.00 0.00 45.38 3.51
2553 2665 2.156917 TGAGACTGCTTGCCTTTCATG 58.843 47.619 0.00 0.00 0.00 3.07
2567 2679 3.539604 CTTTCATGGTCATCACCTCTCC 58.460 50.000 0.00 0.00 44.17 3.71
2568 2680 1.500474 TCATGGTCATCACCTCTCCC 58.500 55.000 0.00 0.00 44.17 4.30
2569 2681 0.105593 CATGGTCATCACCTCTCCCG 59.894 60.000 0.00 0.00 44.17 5.14
2570 2682 0.032117 ATGGTCATCACCTCTCCCGA 60.032 55.000 0.00 0.00 44.17 5.14
2571 2683 0.684479 TGGTCATCACCTCTCCCGAG 60.684 60.000 0.00 0.00 44.17 4.63
2572 2684 0.684805 GGTCATCACCTCTCCCGAGT 60.685 60.000 0.00 0.00 40.00 4.18
2573 2685 1.409802 GGTCATCACCTCTCCCGAGTA 60.410 57.143 0.00 0.00 40.00 2.59
2574 2686 1.950909 GTCATCACCTCTCCCGAGTAG 59.049 57.143 0.00 0.00 35.43 2.57
2575 2687 1.564818 TCATCACCTCTCCCGAGTAGT 59.435 52.381 0.00 0.00 35.43 2.73
2578 2690 2.444421 TCACCTCTCCCGAGTAGTTTC 58.556 52.381 0.00 0.00 35.43 2.78
2589 2706 2.401351 GAGTAGTTTCAACTTCGCCGT 58.599 47.619 0.00 0.00 40.37 5.68
2610 2727 1.152312 ACGACCTGTCAAGACCCCT 60.152 57.895 0.00 0.00 0.00 4.79
2613 2730 1.056660 GACCTGTCAAGACCCCTTCA 58.943 55.000 0.00 0.00 0.00 3.02
2621 2738 3.188667 GTCAAGACCCCTTCAAACGAATC 59.811 47.826 0.00 0.00 0.00 2.52
2622 2739 3.146066 CAAGACCCCTTCAAACGAATCA 58.854 45.455 0.00 0.00 0.00 2.57
2623 2740 3.502123 AGACCCCTTCAAACGAATCAA 57.498 42.857 0.00 0.00 0.00 2.57
2624 2741 3.412386 AGACCCCTTCAAACGAATCAAG 58.588 45.455 0.00 0.00 0.00 3.02
2625 2742 3.146847 GACCCCTTCAAACGAATCAAGT 58.853 45.455 0.00 0.00 0.00 3.16
2626 2743 2.884639 ACCCCTTCAAACGAATCAAGTG 59.115 45.455 0.00 0.00 0.00 3.16
2627 2744 2.351738 CCCCTTCAAACGAATCAAGTGC 60.352 50.000 0.00 0.00 0.00 4.40
2628 2745 2.293122 CCCTTCAAACGAATCAAGTGCA 59.707 45.455 0.00 0.00 0.00 4.57
2629 2746 3.558505 CCTTCAAACGAATCAAGTGCAG 58.441 45.455 0.00 0.00 0.00 4.41
2630 2747 3.250762 CCTTCAAACGAATCAAGTGCAGA 59.749 43.478 0.00 0.00 0.00 4.26
2631 2748 4.083110 CCTTCAAACGAATCAAGTGCAGAT 60.083 41.667 0.00 0.00 0.00 2.90
2632 2749 4.408993 TCAAACGAATCAAGTGCAGATG 57.591 40.909 0.00 0.00 0.00 2.90
2633 2750 2.907910 AACGAATCAAGTGCAGATGC 57.092 45.000 0.00 0.00 42.50 3.91
2634 2751 3.504043 CGAATCAAGTGCAGATGCG 57.496 52.632 0.84 0.84 45.83 4.73
2635 2752 1.001624 CGAATCAAGTGCAGATGCGA 58.998 50.000 8.74 0.00 45.31 5.10
2636 2753 1.005242 CGAATCAAGTGCAGATGCGAG 60.005 52.381 8.74 0.00 45.31 5.03
2637 2754 1.329906 GAATCAAGTGCAGATGCGAGG 59.670 52.381 0.00 0.00 45.83 4.63
2638 2755 0.538584 ATCAAGTGCAGATGCGAGGA 59.461 50.000 0.00 0.00 45.83 3.71
2639 2756 0.390340 TCAAGTGCAGATGCGAGGAC 60.390 55.000 0.00 0.00 45.83 3.85
2640 2757 0.390866 CAAGTGCAGATGCGAGGACT 60.391 55.000 0.00 0.00 45.83 3.85
2641 2758 0.390866 AAGTGCAGATGCGAGGACTG 60.391 55.000 0.00 0.00 45.83 3.51
2642 2759 1.812922 GTGCAGATGCGAGGACTGG 60.813 63.158 0.00 0.00 45.83 4.00
2643 2760 2.285773 TGCAGATGCGAGGACTGGT 61.286 57.895 0.00 0.00 45.83 4.00
2644 2761 0.970427 TGCAGATGCGAGGACTGGTA 60.970 55.000 0.00 0.00 45.83 3.25
2645 2762 0.249238 GCAGATGCGAGGACTGGTAG 60.249 60.000 0.00 0.00 33.00 3.18
2646 2763 0.249238 CAGATGCGAGGACTGGTAGC 60.249 60.000 0.00 0.00 0.00 3.58
2647 2764 0.396417 AGATGCGAGGACTGGTAGCT 60.396 55.000 0.00 0.00 0.00 3.32
2648 2765 0.031449 GATGCGAGGACTGGTAGCTC 59.969 60.000 0.00 0.00 0.00 4.09
2649 2766 1.395826 ATGCGAGGACTGGTAGCTCC 61.396 60.000 0.00 0.00 0.00 4.70
2650 2767 1.755008 GCGAGGACTGGTAGCTCCT 60.755 63.158 2.53 2.53 39.81 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.610232 GATGCTGAAGGTGGCAGGTT 60.610 55.000 0.00 0.00 41.88 3.50
1 2 1.001641 GATGCTGAAGGTGGCAGGT 60.002 57.895 0.00 0.00 41.88 4.00
2 3 2.110967 CGATGCTGAAGGTGGCAGG 61.111 63.158 0.00 0.00 41.88 4.85
3 4 1.078918 TCGATGCTGAAGGTGGCAG 60.079 57.895 0.00 0.00 41.88 4.85
4 5 1.078918 CTCGATGCTGAAGGTGGCA 60.079 57.895 0.00 0.00 42.80 4.92
5 6 1.817099 CCTCGATGCTGAAGGTGGC 60.817 63.158 0.00 0.00 0.00 5.01
6 7 1.817099 GCCTCGATGCTGAAGGTGG 60.817 63.158 5.34 0.00 0.00 4.61
7 8 1.078918 TGCCTCGATGCTGAAGGTG 60.079 57.895 13.93 0.00 0.00 4.00
8 9 1.220206 CTGCCTCGATGCTGAAGGT 59.780 57.895 13.93 0.00 32.50 3.50
9 10 1.523258 CCTGCCTCGATGCTGAAGG 60.523 63.158 18.61 11.23 32.50 3.46
10 11 0.106335 ATCCTGCCTCGATGCTGAAG 59.894 55.000 18.61 6.38 32.50 3.02
11 12 0.179065 CATCCTGCCTCGATGCTGAA 60.179 55.000 18.61 1.06 31.37 3.02
12 13 1.444672 CATCCTGCCTCGATGCTGA 59.555 57.895 18.61 12.90 31.37 4.26
13 14 4.044721 CATCCTGCCTCGATGCTG 57.955 61.111 13.93 12.74 31.37 4.41
16 17 2.174363 TATTGCATCCTGCCTCGATG 57.826 50.000 0.00 0.00 44.23 3.84
17 18 2.498167 GTTATTGCATCCTGCCTCGAT 58.502 47.619 0.00 0.00 44.23 3.59
18 19 1.475034 GGTTATTGCATCCTGCCTCGA 60.475 52.381 0.00 0.00 44.23 4.04
19 20 0.947244 GGTTATTGCATCCTGCCTCG 59.053 55.000 0.00 0.00 44.23 4.63
20 21 2.057137 TGGTTATTGCATCCTGCCTC 57.943 50.000 0.00 0.00 44.23 4.70
21 22 2.696707 CAATGGTTATTGCATCCTGCCT 59.303 45.455 0.00 0.00 44.23 4.75
22 23 3.102052 CAATGGTTATTGCATCCTGCC 57.898 47.619 0.00 0.00 44.23 4.85
31 32 0.817013 AGGTGGCGCAATGGTTATTG 59.183 50.000 10.83 0.00 45.17 1.90
32 33 1.102978 GAGGTGGCGCAATGGTTATT 58.897 50.000 10.83 0.00 0.00 1.40
33 34 0.255890 AGAGGTGGCGCAATGGTTAT 59.744 50.000 10.83 0.00 0.00 1.89
34 35 0.392461 GAGAGGTGGCGCAATGGTTA 60.392 55.000 10.83 0.00 0.00 2.85
35 36 1.675641 GAGAGGTGGCGCAATGGTT 60.676 57.895 10.83 0.00 0.00 3.67
36 37 2.045926 GAGAGGTGGCGCAATGGT 60.046 61.111 10.83 0.00 0.00 3.55
37 38 2.825836 GGAGAGGTGGCGCAATGG 60.826 66.667 10.83 0.00 0.00 3.16
38 39 2.825836 GGGAGAGGTGGCGCAATG 60.826 66.667 10.83 0.00 0.00 2.82
39 40 3.329889 TGGGAGAGGTGGCGCAAT 61.330 61.111 10.83 0.00 0.00 3.56
40 41 4.020617 CTGGGAGAGGTGGCGCAA 62.021 66.667 10.83 0.00 0.00 4.85
42 43 4.767255 CACTGGGAGAGGTGGCGC 62.767 72.222 0.00 0.00 0.00 6.53
43 44 3.314331 ACACTGGGAGAGGTGGCG 61.314 66.667 0.00 0.00 37.72 5.69
44 45 1.557269 ATCACACTGGGAGAGGTGGC 61.557 60.000 0.00 0.00 37.72 5.01
45 46 0.539051 GATCACACTGGGAGAGGTGG 59.461 60.000 0.00 0.00 37.72 4.61
46 47 1.206610 CTGATCACACTGGGAGAGGTG 59.793 57.143 0.00 0.00 39.13 4.00
47 48 1.203237 ACTGATCACACTGGGAGAGGT 60.203 52.381 0.00 0.00 0.00 3.85
48 49 1.566211 ACTGATCACACTGGGAGAGG 58.434 55.000 0.00 0.00 0.00 3.69
49 50 3.511540 TGTAACTGATCACACTGGGAGAG 59.488 47.826 0.00 0.00 0.00 3.20
50 51 3.506398 TGTAACTGATCACACTGGGAGA 58.494 45.455 0.00 0.00 0.00 3.71
51 52 3.961480 TGTAACTGATCACACTGGGAG 57.039 47.619 0.00 0.00 0.00 4.30
52 53 3.119137 CGATGTAACTGATCACACTGGGA 60.119 47.826 0.00 0.00 0.00 4.37
53 54 3.190079 CGATGTAACTGATCACACTGGG 58.810 50.000 0.00 0.00 0.00 4.45
54 55 3.849911 ACGATGTAACTGATCACACTGG 58.150 45.455 0.00 0.00 0.00 4.00
55 56 5.845985 AAACGATGTAACTGATCACACTG 57.154 39.130 0.00 0.00 0.00 3.66
56 57 6.036083 GCATAAACGATGTAACTGATCACACT 59.964 38.462 0.00 0.00 37.90 3.55
57 58 6.185399 GCATAAACGATGTAACTGATCACAC 58.815 40.000 0.00 0.00 37.90 3.82
58 59 5.293324 GGCATAAACGATGTAACTGATCACA 59.707 40.000 0.00 0.00 37.90 3.58
59 60 5.293324 TGGCATAAACGATGTAACTGATCAC 59.707 40.000 0.00 0.00 37.90 3.06
60 61 5.423886 TGGCATAAACGATGTAACTGATCA 58.576 37.500 0.00 0.00 37.90 2.92
61 62 5.984233 TGGCATAAACGATGTAACTGATC 57.016 39.130 0.00 0.00 37.90 2.92
62 63 6.292865 CGAATGGCATAAACGATGTAACTGAT 60.293 38.462 0.00 0.00 37.90 2.90
63 64 5.006261 CGAATGGCATAAACGATGTAACTGA 59.994 40.000 0.00 0.00 37.90 3.41
64 65 5.197549 CGAATGGCATAAACGATGTAACTG 58.802 41.667 0.00 0.00 37.90 3.16
65 66 4.873827 ACGAATGGCATAAACGATGTAACT 59.126 37.500 21.61 0.00 37.90 2.24
66 67 5.151632 ACGAATGGCATAAACGATGTAAC 57.848 39.130 21.61 0.00 37.90 2.50
67 68 5.583061 AGAACGAATGGCATAAACGATGTAA 59.417 36.000 21.61 0.00 37.90 2.41
68 69 5.113383 AGAACGAATGGCATAAACGATGTA 58.887 37.500 21.61 0.00 37.90 2.29
69 70 3.938963 AGAACGAATGGCATAAACGATGT 59.061 39.130 21.61 10.55 37.90 3.06
70 71 4.536364 AGAACGAATGGCATAAACGATG 57.464 40.909 21.61 3.31 38.73 3.84
71 72 4.035208 GGAAGAACGAATGGCATAAACGAT 59.965 41.667 21.61 13.62 0.00 3.73
72 73 3.372822 GGAAGAACGAATGGCATAAACGA 59.627 43.478 21.61 0.00 0.00 3.85
73 74 3.680789 GGAAGAACGAATGGCATAAACG 58.319 45.455 16.00 16.00 0.00 3.60
74 75 3.126343 ACGGAAGAACGAATGGCATAAAC 59.874 43.478 0.00 0.00 37.61 2.01
75 76 3.340034 ACGGAAGAACGAATGGCATAAA 58.660 40.909 0.00 0.00 37.61 1.40
76 77 2.933906 GACGGAAGAACGAATGGCATAA 59.066 45.455 0.00 0.00 37.61 1.90
77 78 2.167693 AGACGGAAGAACGAATGGCATA 59.832 45.455 0.00 0.00 37.61 3.14
78 79 1.066143 AGACGGAAGAACGAATGGCAT 60.066 47.619 0.00 0.00 37.61 4.40
79 80 0.320374 AGACGGAAGAACGAATGGCA 59.680 50.000 0.00 0.00 37.61 4.92
80 81 1.439679 AAGACGGAAGAACGAATGGC 58.560 50.000 0.00 0.00 37.61 4.40
81 82 2.415512 GGAAAGACGGAAGAACGAATGG 59.584 50.000 0.00 0.00 37.61 3.16
82 83 3.326747 AGGAAAGACGGAAGAACGAATG 58.673 45.455 0.00 0.00 37.61 2.67
83 84 3.679824 AGGAAAGACGGAAGAACGAAT 57.320 42.857 0.00 0.00 37.61 3.34
84 85 3.464111 AAGGAAAGACGGAAGAACGAA 57.536 42.857 0.00 0.00 37.61 3.85
85 86 3.464111 AAAGGAAAGACGGAAGAACGA 57.536 42.857 0.00 0.00 37.61 3.85
86 87 4.524749 GAAAAAGGAAAGACGGAAGAACG 58.475 43.478 0.00 0.00 40.31 3.95
87 88 4.261489 GGGAAAAAGGAAAGACGGAAGAAC 60.261 45.833 0.00 0.00 0.00 3.01
88 89 3.887110 GGGAAAAAGGAAAGACGGAAGAA 59.113 43.478 0.00 0.00 0.00 2.52
89 90 3.137728 AGGGAAAAAGGAAAGACGGAAGA 59.862 43.478 0.00 0.00 0.00 2.87
90 91 3.253432 CAGGGAAAAAGGAAAGACGGAAG 59.747 47.826 0.00 0.00 0.00 3.46
91 92 3.219281 CAGGGAAAAAGGAAAGACGGAA 58.781 45.455 0.00 0.00 0.00 4.30
92 93 2.173996 ACAGGGAAAAAGGAAAGACGGA 59.826 45.455 0.00 0.00 0.00 4.69
93 94 2.583143 ACAGGGAAAAAGGAAAGACGG 58.417 47.619 0.00 0.00 0.00 4.79
94 95 4.649088 AAACAGGGAAAAAGGAAAGACG 57.351 40.909 0.00 0.00 0.00 4.18
95 96 5.972935 TGAAAACAGGGAAAAAGGAAAGAC 58.027 37.500 0.00 0.00 0.00 3.01
96 97 6.806668 ATGAAAACAGGGAAAAAGGAAAGA 57.193 33.333 0.00 0.00 0.00 2.52
97 98 7.864108 AAATGAAAACAGGGAAAAAGGAAAG 57.136 32.000 0.00 0.00 0.00 2.62
98 99 8.642935 AAAAATGAAAACAGGGAAAAAGGAAA 57.357 26.923 0.00 0.00 0.00 3.13
131 132 9.801873 ACATGAAGAAAAAGAAAAATTCTCGAA 57.198 25.926 0.00 0.00 39.61 3.71
132 133 9.801873 AACATGAAGAAAAAGAAAAATTCTCGA 57.198 25.926 0.00 0.00 39.61 4.04
158 159 7.804843 AATGTTCATCCATTTTGCAGAAAAA 57.195 28.000 0.00 0.00 41.88 1.94
159 160 7.804843 AAATGTTCATCCATTTTGCAGAAAA 57.195 28.000 0.00 0.00 41.11 2.29
160 161 9.504708 AATAAATGTTCATCCATTTTGCAGAAA 57.495 25.926 4.66 0.00 41.11 2.52
161 162 9.504708 AAATAAATGTTCATCCATTTTGCAGAA 57.495 25.926 4.66 0.00 41.11 3.02
162 163 9.504708 AAAATAAATGTTCATCCATTTTGCAGA 57.495 25.926 4.66 0.00 41.11 4.26
235 236 9.489393 CATTCAATTCGAAAATAAGTTCATCGA 57.511 29.630 0.00 0.00 40.39 3.59
236 237 9.489393 TCATTCAATTCGAAAATAAGTTCATCG 57.511 29.630 0.00 0.00 37.12 3.84
321 322 9.920826 GGTTCATCAAATTTGAAAAGAAAGTTC 57.079 29.630 23.91 14.52 41.13 3.01
322 323 9.671279 AGGTTCATCAAATTTGAAAAGAAAGTT 57.329 25.926 23.91 13.22 41.13 2.66
323 324 9.671279 AAGGTTCATCAAATTTGAAAAGAAAGT 57.329 25.926 23.91 14.50 41.13 2.66
337 338 9.571810 CATCGAATTTGAATAAGGTTCATCAAA 57.428 29.630 0.00 2.69 43.53 2.69
338 339 8.955388 TCATCGAATTTGAATAAGGTTCATCAA 58.045 29.630 0.00 0.00 0.00 2.57
339 340 8.504812 TCATCGAATTTGAATAAGGTTCATCA 57.495 30.769 0.00 0.00 0.00 3.07
340 341 7.589221 GCTCATCGAATTTGAATAAGGTTCATC 59.411 37.037 0.00 0.00 0.00 2.92
341 342 7.067372 TGCTCATCGAATTTGAATAAGGTTCAT 59.933 33.333 0.00 0.00 0.00 2.57
342 343 6.374053 TGCTCATCGAATTTGAATAAGGTTCA 59.626 34.615 0.00 0.00 0.00 3.18
343 344 6.785191 TGCTCATCGAATTTGAATAAGGTTC 58.215 36.000 0.00 0.00 0.00 3.62
344 345 6.375455 ACTGCTCATCGAATTTGAATAAGGTT 59.625 34.615 0.00 0.00 0.00 3.50
345 346 5.882557 ACTGCTCATCGAATTTGAATAAGGT 59.117 36.000 0.00 0.00 0.00 3.50
346 347 6.369059 ACTGCTCATCGAATTTGAATAAGG 57.631 37.500 0.00 0.00 0.00 2.69
347 348 8.679288 AAAACTGCTCATCGAATTTGAATAAG 57.321 30.769 0.00 0.00 0.00 1.73
348 349 8.296000 TGAAAACTGCTCATCGAATTTGAATAA 58.704 29.630 0.00 0.00 0.00 1.40
349 350 7.815641 TGAAAACTGCTCATCGAATTTGAATA 58.184 30.769 0.00 0.00 0.00 1.75
350 351 6.680810 TGAAAACTGCTCATCGAATTTGAAT 58.319 32.000 0.00 0.00 0.00 2.57
351 352 6.070897 TGAAAACTGCTCATCGAATTTGAA 57.929 33.333 0.00 0.00 0.00 2.69
352 353 5.687770 TGAAAACTGCTCATCGAATTTGA 57.312 34.783 0.00 0.00 0.00 2.69
353 354 6.752335 TTTGAAAACTGCTCATCGAATTTG 57.248 33.333 0.00 0.00 0.00 2.32
354 355 6.587608 GGATTTGAAAACTGCTCATCGAATTT 59.412 34.615 0.00 0.00 0.00 1.82
355 356 6.095377 GGATTTGAAAACTGCTCATCGAATT 58.905 36.000 0.00 0.00 0.00 2.17
356 357 5.644644 GGATTTGAAAACTGCTCATCGAAT 58.355 37.500 0.00 0.00 0.00 3.34
357 358 4.378356 CGGATTTGAAAACTGCTCATCGAA 60.378 41.667 0.00 0.00 0.00 3.71
358 359 3.125146 CGGATTTGAAAACTGCTCATCGA 59.875 43.478 0.00 0.00 0.00 3.59
359 360 3.125146 TCGGATTTGAAAACTGCTCATCG 59.875 43.478 0.00 0.00 0.00 3.84
360 361 4.685169 TCGGATTTGAAAACTGCTCATC 57.315 40.909 0.00 0.00 0.00 2.92
361 362 4.701651 TCATCGGATTTGAAAACTGCTCAT 59.298 37.500 0.00 0.00 0.00 2.90
362 363 4.071423 TCATCGGATTTGAAAACTGCTCA 58.929 39.130 0.00 0.00 0.00 4.26
363 364 4.685169 TCATCGGATTTGAAAACTGCTC 57.315 40.909 0.00 0.00 0.00 4.26
364 365 5.649782 AATCATCGGATTTGAAAACTGCT 57.350 34.783 0.00 0.00 40.87 4.24
375 376 8.720562 GTTCAAATTTGGAAAAATCATCGGATT 58.279 29.630 17.90 0.00 45.57 3.01
376 377 8.096414 AGTTCAAATTTGGAAAAATCATCGGAT 58.904 29.630 17.90 0.00 34.43 4.18
377 378 7.441017 AGTTCAAATTTGGAAAAATCATCGGA 58.559 30.769 17.90 0.00 0.00 4.55
378 379 7.656707 AGTTCAAATTTGGAAAAATCATCGG 57.343 32.000 17.90 0.00 0.00 4.18
379 380 9.934190 AAAAGTTCAAATTTGGAAAAATCATCG 57.066 25.926 17.90 0.00 0.00 3.84
397 398 5.872070 AGTTCGCCAAAATTGAAAAAGTTCA 59.128 32.000 0.00 0.00 42.12 3.18
398 399 6.344572 AGTTCGCCAAAATTGAAAAAGTTC 57.655 33.333 0.00 0.00 0.00 3.01
399 400 6.735678 AAGTTCGCCAAAATTGAAAAAGTT 57.264 29.167 0.00 0.00 0.00 2.66
400 401 6.735678 AAAGTTCGCCAAAATTGAAAAAGT 57.264 29.167 0.00 0.00 0.00 2.66
422 423 7.769272 AAGAAAGTTCATCGCATTTGAAAAA 57.231 28.000 0.00 0.00 35.03 1.94
423 424 7.769272 AAAGAAAGTTCATCGCATTTGAAAA 57.231 28.000 0.00 0.00 35.03 2.29
424 425 7.490725 TGAAAAGAAAGTTCATCGCATTTGAAA 59.509 29.630 0.00 0.00 35.03 2.69
425 426 6.977502 TGAAAAGAAAGTTCATCGCATTTGAA 59.022 30.769 0.00 0.00 30.08 2.69
426 427 6.502652 TGAAAAGAAAGTTCATCGCATTTGA 58.497 32.000 0.00 0.00 30.08 2.69
427 428 6.752335 TGAAAAGAAAGTTCATCGCATTTG 57.248 33.333 0.00 0.00 30.08 2.32
428 429 7.769272 TTTGAAAAGAAAGTTCATCGCATTT 57.231 28.000 0.00 0.00 35.03 2.32
429 430 7.951530 ATTTGAAAAGAAAGTTCATCGCATT 57.048 28.000 0.00 0.00 35.03 3.56
430 431 7.951530 AATTTGAAAAGAAAGTTCATCGCAT 57.048 28.000 0.00 0.00 35.03 4.73
431 432 7.490725 TGAAATTTGAAAAGAAAGTTCATCGCA 59.509 29.630 0.00 0.00 42.11 5.10
432 433 7.840489 TGAAATTTGAAAAGAAAGTTCATCGC 58.160 30.769 0.00 0.00 42.11 4.58
455 456 9.467258 GTTCATCAAATTTGAGAAAGTTCATGA 57.533 29.630 24.17 16.46 34.89 3.07
456 457 9.472361 AGTTCATCAAATTTGAGAAAGTTCATG 57.528 29.630 24.17 14.65 41.08 3.07
458 459 9.874205 AAAGTTCATCAAATTTGAGAAAGTTCA 57.126 25.926 24.17 0.21 41.08 3.18
507 508 9.834628 CAAGCTAATAAGTTCACGGATTTTAAA 57.165 29.630 0.00 0.00 0.00 1.52
508 509 7.966204 GCAAGCTAATAAGTTCACGGATTTTAA 59.034 33.333 0.00 0.00 0.00 1.52
509 510 7.414762 GGCAAGCTAATAAGTTCACGGATTTTA 60.415 37.037 0.00 0.00 0.00 1.52
510 511 6.322491 GCAAGCTAATAAGTTCACGGATTTT 58.678 36.000 0.00 0.00 0.00 1.82
511 512 5.163652 GGCAAGCTAATAAGTTCACGGATTT 60.164 40.000 0.00 0.00 0.00 2.17
512 513 4.335594 GGCAAGCTAATAAGTTCACGGATT 59.664 41.667 0.00 0.00 0.00 3.01
513 514 3.877508 GGCAAGCTAATAAGTTCACGGAT 59.122 43.478 0.00 0.00 0.00 4.18
514 515 3.267483 GGCAAGCTAATAAGTTCACGGA 58.733 45.455 0.00 0.00 0.00 4.69
515 516 2.354821 GGGCAAGCTAATAAGTTCACGG 59.645 50.000 0.00 0.00 0.00 4.94
516 517 3.006940 TGGGCAAGCTAATAAGTTCACG 58.993 45.455 0.00 0.00 0.00 4.35
517 518 4.622701 CTGGGCAAGCTAATAAGTTCAC 57.377 45.455 0.00 0.00 0.00 3.18
539 540 1.153389 GCATGGATTTTTGGCCCGG 60.153 57.895 0.00 0.00 0.00 5.73
541 542 4.961637 GGCATGGATTTTTGGCCC 57.038 55.556 0.00 0.00 38.70 5.80
546 547 2.285824 CCCACGGGCATGGATTTTT 58.714 52.632 8.52 0.00 43.02 1.94
584 585 2.288948 ACGCCCGAAAATACTACACACA 60.289 45.455 0.00 0.00 0.00 3.72
599 620 1.727880 TCTTTGATTCGTTAACGCCCG 59.272 47.619 22.96 0.00 39.60 6.13
604 625 7.692705 GCCTGTAAGAATCTTTGATTCGTTAAC 59.307 37.037 12.32 0.00 34.07 2.01
610 631 5.449725 GCCAGCCTGTAAGAATCTTTGATTC 60.450 44.000 0.00 11.15 34.07 2.52
612 633 3.950395 GCCAGCCTGTAAGAATCTTTGAT 59.050 43.478 0.00 0.00 34.07 2.57
615 636 3.439857 TGCCAGCCTGTAAGAATCTTT 57.560 42.857 0.00 0.00 34.07 2.52
623 644 7.902087 ACTTTTATTTTTATGCCAGCCTGTAA 58.098 30.769 0.00 0.00 0.00 2.41
645 666 9.338622 AGATGTGCTTTAGTAAAACTGTAACTT 57.661 29.630 0.00 0.00 0.00 2.66
650 671 9.155975 CATCTAGATGTGCTTTAGTAAAACTGT 57.844 33.333 22.42 0.00 34.23 3.55
677 698 6.356556 ACTTAGATGTGCAATACTTATGGCA 58.643 36.000 0.00 0.00 40.19 4.92
678 699 6.708054 AGACTTAGATGTGCAATACTTATGGC 59.292 38.462 0.00 0.00 33.16 4.40
679 700 8.668510 AAGACTTAGATGTGCAATACTTATGG 57.331 34.615 0.00 0.00 0.00 2.74
683 704 9.319143 GACATAAGACTTAGATGTGCAATACTT 57.681 33.333 8.08 0.00 33.99 2.24
684 705 8.478066 TGACATAAGACTTAGATGTGCAATACT 58.522 33.333 8.08 0.00 33.99 2.12
685 706 8.648557 TGACATAAGACTTAGATGTGCAATAC 57.351 34.615 8.08 0.00 33.99 1.89
686 707 9.836864 AATGACATAAGACTTAGATGTGCAATA 57.163 29.630 8.08 0.00 33.99 1.90
687 708 8.743085 AATGACATAAGACTTAGATGTGCAAT 57.257 30.769 8.08 0.00 33.99 3.56
688 709 8.453320 CAAATGACATAAGACTTAGATGTGCAA 58.547 33.333 8.08 0.00 33.99 4.08
689 710 7.823799 TCAAATGACATAAGACTTAGATGTGCA 59.176 33.333 8.08 6.89 33.99 4.57
690 711 8.201554 TCAAATGACATAAGACTTAGATGTGC 57.798 34.615 8.08 2.53 33.99 4.57
698 719 9.088512 GACGTAAGATCAAATGACATAAGACTT 57.911 33.333 0.00 0.00 43.62 3.01
699 720 7.432545 CGACGTAAGATCAAATGACATAAGACT 59.567 37.037 0.00 0.00 43.62 3.24
700 721 7.431376 TCGACGTAAGATCAAATGACATAAGAC 59.569 37.037 0.00 0.00 43.62 3.01
701 722 7.477494 TCGACGTAAGATCAAATGACATAAGA 58.523 34.615 0.00 0.00 43.62 2.10
702 723 7.644157 TCTCGACGTAAGATCAAATGACATAAG 59.356 37.037 0.00 0.00 43.62 1.73
703 724 7.477494 TCTCGACGTAAGATCAAATGACATAA 58.523 34.615 0.00 0.00 43.62 1.90
704 725 7.023197 TCTCGACGTAAGATCAAATGACATA 57.977 36.000 0.00 0.00 43.62 2.29
705 726 5.891451 TCTCGACGTAAGATCAAATGACAT 58.109 37.500 0.00 0.00 43.62 3.06
706 727 5.305139 TCTCGACGTAAGATCAAATGACA 57.695 39.130 0.00 0.00 43.62 3.58
707 728 6.814076 AATCTCGACGTAAGATCAAATGAC 57.186 37.500 12.04 0.00 43.62 3.06
708 729 6.811665 ACAAATCTCGACGTAAGATCAAATGA 59.188 34.615 12.04 0.00 43.62 2.57
709 730 6.896613 CACAAATCTCGACGTAAGATCAAATG 59.103 38.462 12.04 11.15 43.62 2.32
710 731 6.590292 ACACAAATCTCGACGTAAGATCAAAT 59.410 34.615 12.04 0.00 43.62 2.32
711 732 5.924254 ACACAAATCTCGACGTAAGATCAAA 59.076 36.000 12.04 0.00 43.62 2.69
712 733 5.344933 CACACAAATCTCGACGTAAGATCAA 59.655 40.000 12.04 0.00 43.62 2.57
713 734 4.857037 CACACAAATCTCGACGTAAGATCA 59.143 41.667 12.04 0.00 43.62 2.92
714 735 4.265556 CCACACAAATCTCGACGTAAGATC 59.734 45.833 12.04 0.00 43.62 2.75
715 736 4.082408 TCCACACAAATCTCGACGTAAGAT 60.082 41.667 7.03 7.03 43.62 2.40
716 737 3.253921 TCCACACAAATCTCGACGTAAGA 59.746 43.478 2.87 2.87 43.62 2.10
718 739 3.646611 TCCACACAAATCTCGACGTAA 57.353 42.857 0.00 0.00 0.00 3.18
719 740 3.861276 ATCCACACAAATCTCGACGTA 57.139 42.857 0.00 0.00 0.00 3.57
720 741 2.743636 ATCCACACAAATCTCGACGT 57.256 45.000 0.00 0.00 0.00 4.34
721 742 5.718649 AAATATCCACACAAATCTCGACG 57.281 39.130 0.00 0.00 0.00 5.12
722 743 7.752695 AGAAAAATATCCACACAAATCTCGAC 58.247 34.615 0.00 0.00 0.00 4.20
723 744 7.921786 AGAAAAATATCCACACAAATCTCGA 57.078 32.000 0.00 0.00 0.00 4.04
724 745 8.970691 AAAGAAAAATATCCACACAAATCTCG 57.029 30.769 0.00 0.00 0.00 4.04
755 776 9.090692 GCACATTTAATTGAGTGAATTAAGCAT 57.909 29.630 7.44 0.00 43.96 3.79
756 777 8.087136 TGCACATTTAATTGAGTGAATTAAGCA 58.913 29.630 12.30 12.30 43.96 3.91
757 778 8.464770 TGCACATTTAATTGAGTGAATTAAGC 57.535 30.769 7.44 8.16 43.96 3.09
768 789 9.920133 TGCTTTAGTTATTGCACATTTAATTGA 57.080 25.926 4.42 0.00 0.00 2.57
779 800 5.651576 TGGATGATGTGCTTTAGTTATTGCA 59.348 36.000 0.00 0.00 0.00 4.08
780 801 6.135290 TGGATGATGTGCTTTAGTTATTGC 57.865 37.500 0.00 0.00 0.00 3.56
781 802 7.864379 GGATTGGATGATGTGCTTTAGTTATTG 59.136 37.037 0.00 0.00 0.00 1.90
782 803 7.781693 AGGATTGGATGATGTGCTTTAGTTATT 59.218 33.333 0.00 0.00 0.00 1.40
783 804 7.230108 CAGGATTGGATGATGTGCTTTAGTTAT 59.770 37.037 0.00 0.00 0.00 1.89
784 805 6.543465 CAGGATTGGATGATGTGCTTTAGTTA 59.457 38.462 0.00 0.00 0.00 2.24
785 806 5.359009 CAGGATTGGATGATGTGCTTTAGTT 59.641 40.000 0.00 0.00 0.00 2.24
786 807 4.885907 CAGGATTGGATGATGTGCTTTAGT 59.114 41.667 0.00 0.00 0.00 2.24
787 808 5.128205 TCAGGATTGGATGATGTGCTTTAG 58.872 41.667 0.00 0.00 0.00 1.85
788 809 5.104402 TCTCAGGATTGGATGATGTGCTTTA 60.104 40.000 0.00 0.00 0.00 1.85
789 810 3.952323 CTCAGGATTGGATGATGTGCTTT 59.048 43.478 0.00 0.00 0.00 3.51
790 811 3.201487 TCTCAGGATTGGATGATGTGCTT 59.799 43.478 0.00 0.00 0.00 3.91
791 812 2.775960 TCTCAGGATTGGATGATGTGCT 59.224 45.455 0.00 0.00 0.00 4.40
792 813 3.204306 TCTCAGGATTGGATGATGTGC 57.796 47.619 0.00 0.00 0.00 4.57
793 814 4.325119 GGATCTCAGGATTGGATGATGTG 58.675 47.826 0.00 0.00 31.46 3.21
794 815 3.007723 CGGATCTCAGGATTGGATGATGT 59.992 47.826 0.00 0.00 31.46 3.06
795 816 3.260128 TCGGATCTCAGGATTGGATGATG 59.740 47.826 0.00 0.00 31.46 3.07
796 817 3.514539 TCGGATCTCAGGATTGGATGAT 58.485 45.455 0.00 0.00 31.46 2.45
797 818 2.896044 CTCGGATCTCAGGATTGGATGA 59.104 50.000 0.00 0.00 31.46 2.92
798 819 2.896044 TCTCGGATCTCAGGATTGGATG 59.104 50.000 0.00 0.00 31.46 3.51
799 820 3.251016 TCTCGGATCTCAGGATTGGAT 57.749 47.619 0.00 0.00 31.46 3.41
800 821 2.755952 TCTCGGATCTCAGGATTGGA 57.244 50.000 0.00 0.00 31.46 3.53
801 822 2.896044 TCATCTCGGATCTCAGGATTGG 59.104 50.000 0.00 0.00 31.46 3.16
802 823 4.804868 ATCATCTCGGATCTCAGGATTG 57.195 45.455 0.00 0.00 31.46 2.67
803 824 5.299028 CGATATCATCTCGGATCTCAGGATT 59.701 44.000 3.12 0.00 32.58 3.01
804 825 4.821260 CGATATCATCTCGGATCTCAGGAT 59.179 45.833 3.12 0.00 32.58 3.24
805 826 4.195416 CGATATCATCTCGGATCTCAGGA 58.805 47.826 3.12 0.00 32.58 3.86
806 827 3.243035 GCGATATCATCTCGGATCTCAGG 60.243 52.174 3.12 0.00 36.65 3.86
807 828 3.243035 GGCGATATCATCTCGGATCTCAG 60.243 52.174 3.12 0.00 36.65 3.35
808 829 2.685388 GGCGATATCATCTCGGATCTCA 59.315 50.000 3.12 0.00 36.65 3.27
809 830 2.948979 AGGCGATATCATCTCGGATCTC 59.051 50.000 3.12 0.00 36.65 2.75
810 831 3.011566 AGGCGATATCATCTCGGATCT 57.988 47.619 3.12 0.00 36.65 2.75
811 832 3.490078 GGAAGGCGATATCATCTCGGATC 60.490 52.174 3.12 0.00 36.65 3.36
812 833 2.428890 GGAAGGCGATATCATCTCGGAT 59.571 50.000 3.12 0.00 36.65 4.18
813 834 1.819288 GGAAGGCGATATCATCTCGGA 59.181 52.381 3.12 0.00 36.65 4.55
814 835 1.134965 GGGAAGGCGATATCATCTCGG 60.135 57.143 3.12 0.00 36.65 4.63
815 836 1.546029 TGGGAAGGCGATATCATCTCG 59.454 52.381 3.12 0.00 39.11 4.04
816 837 3.685139 TTGGGAAGGCGATATCATCTC 57.315 47.619 3.12 0.00 0.00 2.75
817 838 3.496870 GGTTTGGGAAGGCGATATCATCT 60.497 47.826 3.12 0.00 0.00 2.90
873 894 3.471806 GGGAAGAGGGACGAGGGC 61.472 72.222 0.00 0.00 0.00 5.19
892 913 1.283181 CGGCGATAGGAACGAGGAG 59.717 63.158 0.00 0.00 0.00 3.69
921 942 1.120530 GGTGCTAGAAATCGAGGGGA 58.879 55.000 0.00 0.00 0.00 4.81
922 943 0.106894 GGGTGCTAGAAATCGAGGGG 59.893 60.000 0.00 0.00 0.00 4.79
934 955 2.914756 TAGGGTCGCGATGGGTGCTA 62.915 60.000 14.06 0.00 0.00 3.49
993 1023 2.825836 GCTGTCTCCATTGGGGCG 60.826 66.667 2.09 0.00 36.21 6.13
1065 1095 4.120755 CCCTGGAGCTTGAGGGGC 62.121 72.222 19.26 0.00 44.88 5.80
1173 1212 1.484240 CTTTTCTCGATGGGGAGCTCT 59.516 52.381 14.64 0.00 33.98 4.09
1210 1249 0.676466 TGGTTGATGTCCATGACGGC 60.676 55.000 0.00 0.00 34.95 5.68
1266 1305 3.085533 CTCGATGACCCTATCTACCAGG 58.914 54.545 0.00 0.00 0.00 4.45
1281 1320 1.751351 TCTCCTGCCTTGTACTCGATG 59.249 52.381 0.00 0.00 0.00 3.84
1506 1545 1.271054 ACCAGAGTGTCACCAGCAATC 60.271 52.381 0.00 0.00 0.00 2.67
1548 1587 4.392940 CAAGCCCGAATTTCCTCTGATAT 58.607 43.478 0.00 0.00 0.00 1.63
1556 1595 1.272212 TCTTTGCAAGCCCGAATTTCC 59.728 47.619 0.00 0.00 0.00 3.13
1646 1685 8.801299 CATAGTACACAGGTAGATCTGATCATT 58.199 37.037 19.12 2.77 38.11 2.57
1647 1686 7.947332 ACATAGTACACAGGTAGATCTGATCAT 59.053 37.037 19.12 7.47 38.11 2.45
1651 1690 6.659824 TCACATAGTACACAGGTAGATCTGA 58.340 40.000 5.18 0.00 38.11 3.27
1659 1698 4.873010 AGAGGATCACATAGTACACAGGT 58.127 43.478 0.00 0.00 37.82 4.00
1667 1706 6.015856 CGGATCTTGTAAGAGGATCACATAGT 60.016 42.308 0.00 0.00 38.66 2.12
1669 1708 6.068670 TCGGATCTTGTAAGAGGATCACATA 58.931 40.000 0.00 0.00 38.66 2.29
1682 1721 4.543689 ACCCAGTCTAATCGGATCTTGTA 58.456 43.478 0.00 0.00 0.00 2.41
1691 1730 4.566004 TCTCAACAAACCCAGTCTAATCG 58.434 43.478 0.00 0.00 0.00 3.34
1699 1738 4.823989 ACTCAATTCTCTCAACAAACCCAG 59.176 41.667 0.00 0.00 0.00 4.45
1702 1741 5.973565 CACAACTCAATTCTCTCAACAAACC 59.026 40.000 0.00 0.00 0.00 3.27
1762 1812 6.266558 AGGCCATTACACAACTTTGATGTAAA 59.733 34.615 5.01 5.78 37.75 2.01
1763 1813 5.772672 AGGCCATTACACAACTTTGATGTAA 59.227 36.000 5.01 14.16 38.14 2.41
1764 1814 5.321102 AGGCCATTACACAACTTTGATGTA 58.679 37.500 5.01 0.00 0.00 2.29
1765 1815 4.151883 AGGCCATTACACAACTTTGATGT 58.848 39.130 5.01 0.04 0.00 3.06
1766 1816 4.789012 AGGCCATTACACAACTTTGATG 57.211 40.909 5.01 0.00 0.00 3.07
1767 1817 5.806654 AAAGGCCATTACACAACTTTGAT 57.193 34.783 5.01 0.00 0.00 2.57
1769 1819 4.511082 CCAAAAGGCCATTACACAACTTTG 59.489 41.667 5.01 0.00 0.00 2.77
1770 1820 4.444164 CCCAAAAGGCCATTACACAACTTT 60.444 41.667 5.01 0.00 0.00 2.66
1930 1984 2.546789 CCGCCCCAAATTATAAGACGTC 59.453 50.000 7.70 7.70 0.00 4.34
1956 2010 4.381505 CGGGGCAAAGCATTAAAATGTACT 60.382 41.667 4.71 0.00 38.65 2.73
1965 2019 0.679640 CACTCCGGGGCAAAGCATTA 60.680 55.000 0.00 0.00 0.00 1.90
1978 2032 1.860950 CTTGATAATGGCGTCACTCCG 59.139 52.381 0.00 0.00 0.00 4.63
1980 2034 2.906354 ACCTTGATAATGGCGTCACTC 58.094 47.619 0.00 0.00 0.00 3.51
2001 2067 7.766278 GTCTGAATTCACTGTGGTAGATGTAAT 59.234 37.037 3.38 0.00 0.00 1.89
2010 2076 7.581213 TTAAATTGTCTGAATTCACTGTGGT 57.419 32.000 3.38 0.00 0.00 4.16
2035 2101 6.240145 ACTTAAAATGCATGGCCAAGAAAAT 58.760 32.000 10.96 0.00 0.00 1.82
2043 2109 5.301805 ACCACTATACTTAAAATGCATGGCC 59.698 40.000 0.00 0.00 0.00 5.36
2094 2160 2.290008 TGATAGTTGTGCATCCACGGTT 60.290 45.455 0.00 0.00 45.04 4.44
2096 2162 2.022764 TGATAGTTGTGCATCCACGG 57.977 50.000 0.00 0.00 45.04 4.94
2107 2174 9.806203 TTCCAAAATCTGCATAAATGATAGTTG 57.194 29.630 0.00 0.00 0.00 3.16
2137 2204 9.737427 CTTAACGTGTGAAATCATCTAGTATCT 57.263 33.333 0.00 0.00 0.00 1.98
2138 2205 9.517609 ACTTAACGTGTGAAATCATCTAGTATC 57.482 33.333 0.00 0.00 0.00 2.24
2168 2270 1.335324 GCCTGAATCTTGTGTGTGCAC 60.335 52.381 10.75 10.75 45.44 4.57
2235 2344 4.452455 AGTTCAGGTTCTACATTTTCTGCG 59.548 41.667 0.00 0.00 0.00 5.18
2275 2384 4.883083 TCTGGTGTTTACTCTGATGTCAC 58.117 43.478 0.00 0.00 0.00 3.67
2339 2448 9.524496 CAGGTATAAGGTGTACATATGGTAGTA 57.476 37.037 7.80 0.00 31.13 1.82
2340 2449 8.008922 ACAGGTATAAGGTGTACATATGGTAGT 58.991 37.037 7.80 0.00 31.13 2.73
2341 2450 8.418597 ACAGGTATAAGGTGTACATATGGTAG 57.581 38.462 7.80 0.00 31.13 3.18
2342 2451 7.452501 GGACAGGTATAAGGTGTACATATGGTA 59.547 40.741 7.80 0.00 0.00 3.25
2343 2452 6.269307 GGACAGGTATAAGGTGTACATATGGT 59.731 42.308 7.80 0.00 0.00 3.55
2344 2453 6.269077 TGGACAGGTATAAGGTGTACATATGG 59.731 42.308 7.80 0.00 29.75 2.74
2345 2454 7.297936 TGGACAGGTATAAGGTGTACATATG 57.702 40.000 0.00 0.00 29.75 1.78
2346 2455 7.346175 TGTTGGACAGGTATAAGGTGTACATAT 59.654 37.037 0.00 0.00 34.96 1.78
2347 2456 6.668718 TGTTGGACAGGTATAAGGTGTACATA 59.331 38.462 0.00 0.00 34.96 2.29
2348 2457 5.486063 TGTTGGACAGGTATAAGGTGTACAT 59.514 40.000 0.00 0.00 34.96 2.29
2349 2458 4.839550 TGTTGGACAGGTATAAGGTGTACA 59.160 41.667 0.00 0.00 33.04 2.90
2350 2459 5.410355 TGTTGGACAGGTATAAGGTGTAC 57.590 43.478 0.00 0.00 0.00 2.90
2351 2460 5.544948 AGTTGTTGGACAGGTATAAGGTGTA 59.455 40.000 0.00 0.00 0.00 2.90
2352 2461 4.349930 AGTTGTTGGACAGGTATAAGGTGT 59.650 41.667 0.00 0.00 0.00 4.16
2353 2462 4.695455 CAGTTGTTGGACAGGTATAAGGTG 59.305 45.833 0.00 0.00 0.00 4.00
2354 2463 4.806286 GCAGTTGTTGGACAGGTATAAGGT 60.806 45.833 0.00 0.00 0.00 3.50
2355 2464 3.689649 GCAGTTGTTGGACAGGTATAAGG 59.310 47.826 0.00 0.00 0.00 2.69
2356 2465 4.323417 TGCAGTTGTTGGACAGGTATAAG 58.677 43.478 0.00 0.00 0.00 1.73
2357 2466 4.359434 TGCAGTTGTTGGACAGGTATAA 57.641 40.909 0.00 0.00 0.00 0.98
2358 2467 4.359434 TTGCAGTTGTTGGACAGGTATA 57.641 40.909 0.00 0.00 0.00 1.47
2359 2468 2.949177 TGCAGTTGTTGGACAGGTAT 57.051 45.000 0.00 0.00 0.00 2.73
2360 2469 2.719531 TTGCAGTTGTTGGACAGGTA 57.280 45.000 0.00 0.00 0.00 3.08
2361 2470 2.071778 ATTGCAGTTGTTGGACAGGT 57.928 45.000 0.00 0.00 0.00 4.00
2362 2471 4.789012 AATATTGCAGTTGTTGGACAGG 57.211 40.909 0.00 0.00 0.00 4.00
2383 2492 4.098196 CCTTAAGGGACCACGTTTCAAAAA 59.902 41.667 14.25 0.00 37.23 1.94
2384 2493 3.633065 CCTTAAGGGACCACGTTTCAAAA 59.367 43.478 14.25 0.00 37.23 2.44
2385 2494 3.215975 CCTTAAGGGACCACGTTTCAAA 58.784 45.455 14.25 0.00 37.23 2.69
2386 2495 2.173143 ACCTTAAGGGACCACGTTTCAA 59.827 45.455 25.31 0.00 40.27 2.69
2387 2496 1.770061 ACCTTAAGGGACCACGTTTCA 59.230 47.619 25.31 0.00 40.27 2.69
2388 2497 2.556144 ACCTTAAGGGACCACGTTTC 57.444 50.000 25.31 0.00 40.27 2.78
2389 2498 3.242011 TCTACCTTAAGGGACCACGTTT 58.758 45.455 25.31 3.67 40.27 3.60
2390 2499 2.893424 TCTACCTTAAGGGACCACGTT 58.107 47.619 25.31 4.40 40.27 3.99
2391 2500 2.610438 TCTACCTTAAGGGACCACGT 57.390 50.000 25.31 5.15 40.27 4.49
2392 2501 4.891756 TCTATTCTACCTTAAGGGACCACG 59.108 45.833 25.31 5.41 40.27 4.94
2393 2502 5.898397 ACTCTATTCTACCTTAAGGGACCAC 59.102 44.000 25.31 0.00 40.27 4.16
2394 2503 6.101274 ACTCTATTCTACCTTAAGGGACCA 57.899 41.667 25.31 4.49 40.27 4.02
2395 2504 7.434927 AAACTCTATTCTACCTTAAGGGACC 57.565 40.000 25.31 0.00 40.27 4.46
2396 2505 8.420222 GGTAAACTCTATTCTACCTTAAGGGAC 58.580 40.741 25.31 0.09 40.27 4.46
2397 2506 7.286316 CGGTAAACTCTATTCTACCTTAAGGGA 59.714 40.741 25.31 16.83 40.27 4.20
2398 2507 7.432059 CGGTAAACTCTATTCTACCTTAAGGG 58.568 42.308 25.31 8.88 40.27 3.95
2399 2508 7.069208 ACCGGTAAACTCTATTCTACCTTAAGG 59.931 40.741 20.42 20.42 42.17 2.69
2400 2509 8.005192 ACCGGTAAACTCTATTCTACCTTAAG 57.995 38.462 4.49 0.00 33.08 1.85
2401 2510 7.961326 ACCGGTAAACTCTATTCTACCTTAA 57.039 36.000 4.49 0.00 33.08 1.85
2402 2511 7.961326 AACCGGTAAACTCTATTCTACCTTA 57.039 36.000 8.00 0.00 33.08 2.69
2422 2531 8.480643 TTGCCATGGTTTTTATTAATTAACCG 57.519 30.769 14.67 8.08 42.29 4.44
2430 2539 6.522054 TCGGTTTTTGCCATGGTTTTTATTA 58.478 32.000 14.67 0.00 0.00 0.98
2431 2540 5.368989 TCGGTTTTTGCCATGGTTTTTATT 58.631 33.333 14.67 0.00 0.00 1.40
2432 2541 4.962155 TCGGTTTTTGCCATGGTTTTTAT 58.038 34.783 14.67 0.00 0.00 1.40
2433 2542 4.402056 TCGGTTTTTGCCATGGTTTTTA 57.598 36.364 14.67 0.00 0.00 1.52
2441 2550 2.554893 ACGTTGTATCGGTTTTTGCCAT 59.445 40.909 0.00 0.00 34.94 4.40
2451 2560 0.951525 TTGTGGGCACGTTGTATCGG 60.952 55.000 0.00 0.00 34.94 4.18
2468 2577 3.064324 CCGGGCTGCCCTTTCTTG 61.064 66.667 33.39 17.58 42.67 3.02
2513 2622 0.904865 ACGACATCCTCTTCAGGGCA 60.905 55.000 0.00 0.00 40.80 5.36
2517 2629 3.192422 AGTCTCAACGACATCCTCTTCAG 59.808 47.826 0.00 0.00 45.32 3.02
2529 2641 0.106708 AAGGCAAGCAGTCTCAACGA 59.893 50.000 0.00 0.00 0.00 3.85
2533 2645 2.156917 CATGAAAGGCAAGCAGTCTCA 58.843 47.619 0.00 0.00 0.00 3.27
2540 2652 1.820519 TGATGACCATGAAAGGCAAGC 59.179 47.619 0.00 0.00 0.00 4.01
2544 2656 2.019984 GAGGTGATGACCATGAAAGGC 58.980 52.381 3.51 0.00 45.98 4.35
2553 2665 4.356979 TCGGGAGAGGTGATGACC 57.643 61.111 0.00 0.00 43.52 4.02
2567 2679 1.725164 GGCGAAGTTGAAACTACTCGG 59.275 52.381 15.37 2.72 38.83 4.63
2568 2680 1.385743 CGGCGAAGTTGAAACTACTCG 59.614 52.381 0.00 11.22 40.43 4.18
2569 2681 2.401351 ACGGCGAAGTTGAAACTACTC 58.599 47.619 16.62 0.00 38.57 2.59
2570 2682 2.521105 ACGGCGAAGTTGAAACTACT 57.479 45.000 16.62 0.00 38.57 2.57
2571 2683 3.363128 GTCTACGGCGAAGTTGAAACTAC 59.637 47.826 16.62 0.00 38.57 2.73
2572 2684 3.568538 GTCTACGGCGAAGTTGAAACTA 58.431 45.455 16.62 0.00 38.57 2.24
2573 2685 2.401351 GTCTACGGCGAAGTTGAAACT 58.599 47.619 16.62 0.00 42.04 2.66
2574 2686 1.123756 CGTCTACGGCGAAGTTGAAAC 59.876 52.381 16.62 0.00 35.37 2.78
2575 2687 1.001487 TCGTCTACGGCGAAGTTGAAA 60.001 47.619 16.62 0.00 40.29 2.69
2578 2690 1.069378 GGTCGTCTACGGCGAAGTTG 61.069 60.000 16.62 0.00 46.26 3.16
2589 2706 1.542492 GGGTCTTGACAGGTCGTCTA 58.458 55.000 3.08 0.00 45.60 2.59
2601 2718 3.146066 TGATTCGTTTGAAGGGGTCTTG 58.854 45.455 0.00 0.00 37.57 3.02
2610 2727 4.786507 CATCTGCACTTGATTCGTTTGAA 58.213 39.130 0.00 0.00 38.76 2.69
2613 2730 2.413239 CGCATCTGCACTTGATTCGTTT 60.413 45.455 2.72 0.00 42.21 3.60
2621 2738 0.390866 AGTCCTCGCATCTGCACTTG 60.391 55.000 2.72 0.00 42.21 3.16
2622 2739 0.390866 CAGTCCTCGCATCTGCACTT 60.391 55.000 2.72 0.00 42.21 3.16
2623 2740 1.217511 CAGTCCTCGCATCTGCACT 59.782 57.895 2.72 0.00 42.21 4.40
2624 2741 1.812922 CCAGTCCTCGCATCTGCAC 60.813 63.158 2.72 0.00 42.21 4.57
2625 2742 0.970427 TACCAGTCCTCGCATCTGCA 60.970 55.000 2.72 0.00 42.21 4.41
2626 2743 0.249238 CTACCAGTCCTCGCATCTGC 60.249 60.000 0.00 0.00 37.78 4.26
2627 2744 0.249238 GCTACCAGTCCTCGCATCTG 60.249 60.000 0.00 0.00 0.00 2.90
2628 2745 0.396417 AGCTACCAGTCCTCGCATCT 60.396 55.000 0.00 0.00 0.00 2.90
2629 2746 0.031449 GAGCTACCAGTCCTCGCATC 59.969 60.000 0.00 0.00 0.00 3.91
2630 2747 1.395826 GGAGCTACCAGTCCTCGCAT 61.396 60.000 0.00 0.00 38.79 4.73
2631 2748 2.052690 GGAGCTACCAGTCCTCGCA 61.053 63.158 0.00 0.00 38.79 5.10
2632 2749 1.755008 AGGAGCTACCAGTCCTCGC 60.755 63.158 0.00 0.00 39.05 5.03
2633 2750 4.668151 AGGAGCTACCAGTCCTCG 57.332 61.111 0.00 0.00 39.05 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.