>input_sequence_72776
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---------------------------------------------------------------------ATGGAGACAGC
CGCCGCCGTGTCCGTGCCCAGATCCGCCTGCCGTGCCGCGCTCCCCTTCCCGGCGCCCCTCAAGCTCCAGGGCCGCGTTG
CGCTCCCCCGCCGGGCGCTCCCCGGGGC------GCCGAGGCAGCGCCTCGTCGCGCGCTGCGCGGCTGCCGACGACAGT
---GCGGCGGCAGAGCTCCCCATCGAGAAAAGGTTCGCCGCCTTCCCGGCCGTCATGGACATCAACCAGATCCGCGAGAT
CCTGCCCCACAGGTTCCCCTTCCTCCTGGTAGATAGGGTCATCGAGTACAAGGCAGGAGAGTATGCTGTTGCGATCAAGA
ATGTCACGATAAATGACAACTTCTTCCCCGGCCACTTCCCGGAGCGCCCGATAATGCCCGGCGTTCTCATGGTTGAGGCC
ATGGCCCAGGTCGGGGGCATCGTGATGCTGCAGCCTGAAGTCGGTGGATCCCAAGACAATTTCTTCTTTGCAGGGGTTGA
TAAGGTGAGATTCAGGAAGCCAGTGATTGCTGGTGACACTCTGGTCATGAGGATGACCCTCACCAAATATCAGAGGAAAT
TCGGGCTTGCAAAGATGGAAGGAAAAGCTTATGTGGGTGGCGACGTAGTGTGTGAGGGGGAGTTCCTCCTTATTAGCGCC
ACTGAATGA-----------------------------------------------------------------------
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>chr2A_1_TraesCS2A01G383100
AACCTGCCACCTTCAGCATCGAGGCAGGATGCAATAACCATTGCGCCACCTCTCCCAGTGTGATCAGTTACATCGTTTAT
GCCATTCGTTCTTCCGTCTTTCCTTTTTCCCTGTTTTCATTTTTTTTCAAATTCGAGAATTTTTCTTTTTCTTCATGTTT
TTTCTGCAAAATGGATGAACATTTATTTTTTCAAATTCAACAAACTTTTTCCATATTTGATGAACTTTTTCATATTCGAT
GAACTTATTTTCGAATTGAATGAACTTTTTTCAAATCTGATGAACATTTTTAAAATTCAATGAACCTTTTTTGAATTCAA
TGAACTTTCTTTTCAAATTTGATGAACCTTATTCAAATTCGATGAGCAGTTTTCAAATCCGATGATTTTTCCAAATTTGA
ACTTTTTCAATTTTGGCGAACTTTTTTCAAATGCGATGAACTTTCTTTTCAAATTTCATGAACTTTCTCAAATTTGATGA
ACTTTTTTTTTAAATTGATGAAGGTTTTTTAAAATCCGTGAACTTATTAGCTTGCCCAGCCGGGCCAAAAATCCATGCCC
GTGGGCCGTGCCAGGCTAAAAATCTGTGT-------------------GT-AGTATTTTCGGGCGTTAACGAATCAAAGA
TTCTTACAGGCTGGCATAAAAATAAAAGTTACAGTTTTACTAAAGCACATCTAGATGTGCCATAAGTATTGCACATCTAA
GTCTTATGTCATTTGATCTTACGTCGAGATTTGTGTGGATATTTTTCTTTTTTTTATGCTTAATTCACTCAATTAAATGT
GCAATAACTAAAGCACATCATCCAATCCTGAGATCCGAGATGATATCGCCTTCCCAAACCAAAACGCAGCGGAGCTTCCA
AAGCCAAACCAAAGCCCTCGTCCCTCTTCCCCCTCCTCGTTCCTATCGCCGCCACCCCTCCTCCCCTCGATTTCTAG---
------CACCCATCGCGACCCTACTCCCCATCCCATACCCAGCCTGCTCCTCGCACCCTCGCCGCCCCAATGGAGACAGC
CGCCGCCGTGTCCGTGCCCAGATCCGCCTGCCGTGCCGCGCTCCCCTTCCCGGCGCCCCTCAAGCTCCAGGGCCGCGTTG
CGCTCCCCCGCCGGGCGCTCCCCGGGGC------GCCGAGGCAGCGCCTCGTCGCGCGCTGCGCGGCTGCCGACGACAGT
---GCGGCGGCAGAGCTCCCCATCGAGAAAAGGTTCGCCGCCTTCCCGGCCGTCATGGACATCAACCAGATCCGCGAGAT
CCTGCCCCACAGGTTCCCCTTCCTCCTGGTAGATAGGGTCATCGAGTACAAGGCAGGAGAGTATGCTGTTGCGATCAAGA
ATGTCACGATAAATGACAACTTCTTCCCCGGCCACTTCCCGGAGCGCCCGATAATGCCCGGCGTTCTCATGGTTGAGGCC
ATGGCCCAGGTCGGGGGCATCGTGATGCTGCAGCCTGAAGTCGGTGGATCCCAAGACAATTTCTTCTTTGCAGGGGTTGA
TAAGGTGAGATTCAGGAAGCCAGTGATTGCTGGTGACACTCTGGTCATGAGGATGACCCTCACCAAATATCAGAGGAAAT
TCGGGCTTGCAAAGATGGAAGGAAAAGCTTATGTGGGTGGCGACGTAGTGTGTGAGGGGGAGTTCCTCCTTATTAGCGCC
ACTGAATGATCAGATCTACCTGTGTACTATGTGATCCTCTTACAAGATCCGATTAGACTGGGT----------TTGTTGA
GAGAATTGAG-TTGTGAACTGAACTTACAACATGTGAGGCAATCTTATCTTTTTACATCA---AAGTTGTGTAATGGCCT
TTTGGGGCCGAGTCAGGCTATGTTGCTGGTGTTACAAGGTTACAATATCTGTAGTTTGGTGGAAT-AACTATGCTTGTTA
AAAAAAAATACTTCCTCTGTTCCAAATTATAAGATGTTCTGATAGACTAAAATAGCCTAACAAGACGTCTTATAATTTGG
GGCGGAGGTAGTACATTTTAATGCTTTGCCCCGGAGTGACGCCATT------------ATCAAGGTATTACATCTACCAC
AGTGAATTCAGACAATTTAAATTTTCTTGGCCATGCATTTTAAGTATAGTGGTTGACTATCTGTGCAACTCATGTATACA
ACC-GTGGATGCACAACTATCATTTATGCAGATTTTGGAATATAGA----------------------------------
-TACTAGATGATTTCACACGTTAAGTTGTGTGCACACACAAGATTCAGGCTT-------ATGAATCTGTAATGTTGTGCA
TATCTATTACTGCACAAAATTCACGCAGAAAATGTAGAACCTGAACTTTGATTGGGATTGCATGTGACATCAGAGTAAAC
ACCAGATAGGTAAGCCGTGCAGCAACTGGTATACGTTGATAATATATTACTACCATATGTACACCTTATACCTGTCCAAC
AACTGCAATATTTTTTGAAACGTGGTCCCTTAAGGTAGAATAGAGTTTACCGGTTAATTAATAAAAACCATGGCAAAAAC
CGATACAACGTGCCCACAAGAAAGGGCAGCCCGGGTGACCTGGCACCAACCAGACCACACAT---GCCCTGAAGAGGATG
TCGTTGAGACTGCTTGCCTTTCATGGTCATCACCTCTCCCGAGTAGTTTCA-----ACTTCGCCGTAGACGACCTGTCAA
GACCCCTTCAAACGAATCAAGTGCAGATGCGAGGACTGGTAGCTCCT
>chr2B_524
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-------------------------------------------TTATTAGCATGCCCAGTCTGGCCGAAAATCCATGCCC
GTGGGCCGTGCCAGGCTAAAAATCCGTGTATGCTGGAGTGCCGGCTGTGT-AGTATTTTTGGGCCTTAACCATTC-AAGA
TTCGCACAGGCTGGCTTAAAAATAATAATCCAATGAAATCCGGGAGG---------------------------------
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--------------------------------------GATGATATCGCCTTCCCAAACCAAAACGCAGCGGAGCTTCCA
AAGCCAAACCAAAACCCTCGTCCCTCTTCCCC-TCCTCGTTCCCATCGCCGCCACCCATCC--CCCTCGATTTCAAGCAC
CCTGCCCACCCATCGCGACCCTACTCCCAATCCCATACCCAGTCTGCTCCTCGCACCCACGCTGCCCCAATGGAGACAGC
CGCCGCCGTGTCCCTGCCCAGATCCGCCGGCCGTGCCGCGCTCCCCTTCCCGGCTCCCCTCAAGCTCCAGGGCCGCGTTG
CGCTCCCCCGCCGTGCGCTCTCCGGGGCGCCAGGGCCGAGGCAGCGCCTCGTCGCGCGCTGCGCGGCTGCCGACAACAGT
---GCGGCGGCGGAGCTCCCCATCGAGAAAAGATTCGCCGCCTTCCCCACCATCATGGACATCAACCAGATCCGCGAGAT
CCTGCCCCACAGGTTCCCCTTCCTTCTGGTAGATAGGGTGATCGAGTACAAGGCAGGAGAGTATGCTGTTGCGATCAAGA
ATGTCACTATAAATGACAACTTCTTCCCCGGCCACTTCCCGGAGCGCCCGATAATGCCCGGCGTTCTCATGGTTGAGGCC
ATGGCCCAGGTTGGCGGTATCGTGATGCTGCAGCCTGAAGTCGGTGGATCCCAAGACAATTTCTATTTTGCAGGGGTTGA
TAAGGTGAGATTCAGGAAACCAGTCATTGCTGGTGACACTTTGGTCATGAGGATGACCCTCACCAAGTATCAGAAGAAAT
TCGGGCTTGCAAAGATGGAAGGAAAGGCTTATGTGGGTGGCGACTTAGTATGTGAGGGGGAGTTTCTCCTTATTAGCTCC
ACTGGGTGAACAGATCTGCCTGTGTGCGATGTGATCCTCTCACAAGATCTGATTAGAATGAGTCCAGGTTCAATTGTTGA
GAGAATTGAG-TTGTGAACTGAACTTACAACATGTGAGACAATTTTATCTTGGGTTTTACATCAAGTTGTGTAATGGCCT
TTTGGGGCCGAGTCAGGCTATGTTGCTGGTGTTACAACGTTACAATATCTGTAGTTTGGTGGAATAAACTATGCTTTTTT
T-AAAAGATACTTCCTGCGTTCCAAATTATAAGATGTTCTGATAGACTAAAATAGCCTAACAAAACGTCTTATAATTTGG
GGCGGAGGTGGTGCATTTCAATGCTTTGCCCATAAGTGACGCCCTTGCCGAACCCTTAATCAAGGTGTTACATCTCCCAC
AGCGAATTCAGACAATTTAATTTTTCTTAGCCATGCATATTAAGTATAGTGGCTGACTATCTGTGCAACTCATGTATA--
AGCTGTGGATGC----GTATGATTTATGCAGATTTTTGGAATATAA-------------------------------ATA
CTACTAGATGATTTCACATTTTGAGTTGTCTGCACACACAAGATTCAGGCTTCCTTACAATGAATCTGTAATGTTGTGCA
TATCTATTACTGCACAAAATTCATACAGAAAATGTAGAACCGGAACTTTGATTGGGATTGCATATGACATCAGAGTAAAC
ACCAGATAGGTAAGCCGTGCAGCAATGG----------------------------------------------------
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>chr2D_554
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-------------------------------------------------------------------------CATGCCC
GTGGGCCGTGCCAGGCTAAAAATCCGTGTATG---GAGTGCCGGCTGTGTAAGTATTTTTGGGCCTTAACCATTC-AAGA
TTCGTACAGGCTGGCTTAAAAATAATAATCCAATGAAATCCGGGAGG---------------------------------
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--------------------------------------GATGATATCGCCTTCCCAAACCAAAACGCAGCGGAGCTTCCA
AAGCCAAACCAAAACCCTCGTCCCTCTTCCCC-TCCTCGTTCCCATCGCCGCCACCCCTCC--CCCTCGATTTCAAGCAC
CCTGCCCACCCATCGGGACCCTACTCCCCATCCCATACCCAATCTGCTCCTCGCACCCACGCTGCCCCAATGGAGACAGC
CGCCGCCGTGTCCGTGCCCAGATCCGCCTGCCGTGCCGCACTCCCCTTCCCGGCTCCCCTCAAGCTCCAGGGCCGCGTTG
CGCTCCCCCGCCGGGCGCTCCCCGGGGC------GCCGAGGCAGCGCCTCGTCGCGCGCTGCGCGGCGGCCGACGACAGT
GCGGCGGCGGCGGAGCTCCCCATCGAGAAAAGGTTCGCCGCCTTCCCGACCGTCATGGACATCAACCAGATCCGCGAGAT
CCTGCCCCACAGGTTCCCCTTCCTTCTGGTAGATAGGGTGATCGAGTACAAGGCAGGAGAGTACGCTGTTGCGATCAAGA
ATGTCACGATAAATGACAACTTCTTCCCCGGCCACTTCCCGGAGCGCCCGATAATGCCCGGCGTTCTCATGGTTGAGGCC
ATGGCCCAGGTCGGGGGCATCGTGATGCTGCAGCCTGAAGTCGGTGGATCCCAAGACAATTTCTTCTTTGCAGGGGTTGA
TAAGGTGAGATTCAGGAAGCCAGTCATTGCTGGTGACACTTTGGTCATGAGGATGACCCTCACCAAGTATCAGAAGAAGT
TCGGGCTTGCAAAGATGGAAGGAAAAGCTTATGTGGGTGGCGATGTAGTGTGTGAGGGGGAGTTCCTCCTTATTAGCGCC
ACTGGGTGAACAGATCTGCTTGTGTGCGATGTGATCCTCTCACAAGATCTGATTAGAATGAGTCCAAGTTCAATTGTTGA
GAGAATTGAGTTTGTGAACTGAACTTACAACATGTGAGGCAATTTTATCTTGGGTTTTACATCAAGTTGTGTAATGGCCT
TTTGGGGCCGAGTCAGGCTATGTTGCTGGTGTTACAAGGTTACGATATCTGTAGTTTCGTGGTATAAACTATGCTTCTTA
AAAAAAGATACTTCCTCTGTTCCAAATTATAAGATGTTCTGATAGACTAAAATAGCCTAACAAAACGTCTTATAATTTGG
GGCGGAGGTGGTACATGTCAATGCTTTGCCCAGACGTCACGCTCTTGCCGAACCCTTAATCAAGGTGTTACATCTCCCAC
AGCGAATTCAGACAATTTAATTTT-CTTAGCCATGCATATTAATTATAGTGGTTGACTATCTGTGCAACTCATGTACTCT
AGCTGTGGATGCATAAGTATGATTTATGCAGATTTTTGGAATATACTCCCTCTCTTCTTAAATATTTGTCTTTTTAGATA
CTACTAGATGGTTTCACACTTTGAGTTGTCTGCACACACAAGATTCAGGCTTCCTTACAATGAATCTGTAATGTTGTGCA
TATCTATAACTGCACAAAATTCATGCAGAAAATGTAGAACCTGAACTTTGATTGGGGTTGCATATGACATGAGAGTAAAC
ACCAGATAGGTAAGCTGTGCAGCAATTGGCCGATTCATTAAAAAAAG---------------------------------
-------------------------------AAGGTATAATAGAGTTTACTGGTTAAT----AAAAACCCTGGCAAAAAT
CGATACAACATGCCCATAAGAAAGGGCAGCCCGGGTGACCTGGCACCAACCAGACCACACACACCGCCATGAAGAGGATG
CCGTCGAGACTACTTTCCTTTCATCGTCATCACCTCTCTTCGAGCAGTTGATTGCGACTTCGCCGCAGACGACCTGTTAA
GACCCCATCGAACGAAT------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S-------S-S----S-------------
------------------------S----------------------------------S----S-----S-S--S----
---S-----------S---------S-S-SSS-SSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------------------
-------------S------------------S----------S-----------------SS-----------S-----
------------------------------------------S---------------S---S-----------------
------------------------------------------------------S-------------------------
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-----------S------------------------------------S-------------------------------
------------------------S--------------S----------------------------------------
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------------------------S---------------S-------------------------S-------S-----
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----SS---S-------S-------S-S------------S--------S-------S--S-------------------
-------------------------------------------S-------SSSSSS-SS--------------------
----------------------------------------------------------------------------S---
------S--------------------------------------------------------S----------------
---------S--------S------------S-S---------S----------------------S--------S----
--S-----------------S-------S---------S----------------------------------------S
-S-----------S--S---S---------------S-S-SSSSS-----------------------------------
-------------------S--S------S--------------------------------------------------
-----------------------S---------------------------------------S----------------
-------------------------S---SSS-SSSSSSS--S-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S------------S-------SSSS-------S---------S
---------S------S--------------------------------------------S------S-----------
S---S------S---S--------S-------------SSSSSSSSS--S---------------S-----------S--
------S--S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_30
----------CTTCAGCATCGAGGCAGGAT--------------------------------------------------
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>reverse_1249
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------------------------------------------------GCCGTCATGGACATCAACCA------------
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>forward_31
-----------TTCAGCATCGAGGCAGGATG-------------------------------------------------
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>reverse_2019
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------------------TAATGCTTTGCCCCGGAGTG------------------------------------------
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