Multiple sequence alignment - TraesCS2A01G382500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G382500 chr2A 100.000 2606 0 0 1 2606 626590782 626588177 0.000000e+00 4813
1 TraesCS2A01G382500 chr2D 95.271 2030 59 14 1 2003 483257421 483255402 0.000000e+00 3182
2 TraesCS2A01G382500 chr2D 97.565 575 14 0 2032 2606 483255421 483254847 0.000000e+00 985
3 TraesCS2A01G382500 chr2B 94.661 2023 65 15 1 1997 568274054 568276059 0.000000e+00 3097
4 TraesCS2A01G382500 chr2B 97.043 575 11 1 2038 2606 568276046 568276620 0.000000e+00 963
5 TraesCS2A01G382500 chr6B 88.914 451 48 2 1097 1546 460928684 460929133 2.930000e-154 555
6 TraesCS2A01G382500 chr6B 86.375 411 54 2 1107 1516 687525408 687524999 5.120000e-122 448
7 TraesCS2A01G382500 chr6D 88.839 448 48 2 1100 1546 296348060 296347614 1.360000e-152 549
8 TraesCS2A01G382500 chr6A 88.248 451 48 4 1100 1549 422328681 422328235 3.820000e-148 534
9 TraesCS2A01G382500 chr1D 86.215 428 52 5 1095 1517 214068359 214067934 8.500000e-125 457
10 TraesCS2A01G382500 chr1A 86.247 429 50 7 1095 1517 271620276 271619851 8.500000e-125 457
11 TraesCS2A01G382500 chr1B 86.441 413 52 4 1107 1517 307004555 307004145 1.420000e-122 449


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G382500 chr2A 626588177 626590782 2605 True 4813.0 4813 100.000 1 2606 1 chr2A.!!$R1 2605
1 TraesCS2A01G382500 chr2D 483254847 483257421 2574 True 2083.5 3182 96.418 1 2606 2 chr2D.!!$R1 2605
2 TraesCS2A01G382500 chr2B 568274054 568276620 2566 False 2030.0 3097 95.852 1 2606 2 chr2B.!!$F1 2605

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
990 996 0.327591 CTTCCCTTTCCTGCTCAGCT 59.672 55.0 0.0 0.0 0.0 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2004 2036 0.109964 AAACACACACACACGCACAC 60.11 50.0 0.0 0.0 0.0 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.783093 CATCAAATGACTACCAGTTAGAAACAA 58.217 33.333 0.00 0.00 31.11 2.83
67 68 4.543692 CCGTACACCGACCTATCAATTAG 58.456 47.826 0.00 0.00 39.56 1.73
122 123 1.821061 CTCACTCGGTGTCCCTGCTT 61.821 60.000 4.33 0.00 34.79 3.91
190 191 0.605589 CCACTCTCTCACTGGTCACC 59.394 60.000 0.00 0.00 0.00 4.02
200 201 0.756903 ACTGGTCACCACTGTGTACC 59.243 55.000 14.04 14.04 43.26 3.34
258 259 2.163412 CCAAACAATACATCCACCACCG 59.837 50.000 0.00 0.00 0.00 4.94
356 357 0.620556 TCTCCCAGCATCTTCCCAAC 59.379 55.000 0.00 0.00 0.00 3.77
463 464 1.830477 AGCTTTTCCAGATCGCTCTCT 59.170 47.619 0.00 0.00 0.00 3.10
473 474 4.509600 CCAGATCGCTCTCTCAAAATAACC 59.490 45.833 0.00 0.00 0.00 2.85
474 475 5.355596 CAGATCGCTCTCTCAAAATAACCT 58.644 41.667 0.00 0.00 0.00 3.50
475 476 5.814705 CAGATCGCTCTCTCAAAATAACCTT 59.185 40.000 0.00 0.00 0.00 3.50
476 477 6.314896 CAGATCGCTCTCTCAAAATAACCTTT 59.685 38.462 0.00 0.00 0.00 3.11
514 515 5.245531 TGTATGTGTCCTCTGATGTTTTCC 58.754 41.667 0.00 0.00 0.00 3.13
528 529 5.717119 GATGTTTTCCATCTTTGTGCAGAT 58.283 37.500 0.00 0.00 45.50 2.90
655 658 3.796111 TCCTGAAAGATCTCCAGGTTCT 58.204 45.455 28.86 0.00 45.71 3.01
733 736 2.401766 GCAGTGGCGAATGGTGAGG 61.402 63.158 0.00 0.00 0.00 3.86
734 737 1.296392 CAGTGGCGAATGGTGAGGA 59.704 57.895 0.00 0.00 0.00 3.71
735 738 0.742281 CAGTGGCGAATGGTGAGGAG 60.742 60.000 0.00 0.00 0.00 3.69
749 752 1.272704 TGAGGAGAGAACCAGCTGCTA 60.273 52.381 8.66 0.00 32.69 3.49
817 820 4.774124 TCATTGACCTCATCATGGTTCTC 58.226 43.478 0.00 0.00 38.03 2.87
830 833 6.332735 TCATGGTTCTCGAATATGTAGGAG 57.667 41.667 0.00 0.00 0.00 3.69
920 926 6.374417 AGAGAATGCCCTACAGAAGTTAAA 57.626 37.500 0.00 0.00 0.00 1.52
922 928 8.090788 AGAGAATGCCCTACAGAAGTTAAATA 57.909 34.615 0.00 0.00 0.00 1.40
964 970 3.132111 TCACAGTCACACTTGCTTGAGTA 59.868 43.478 0.00 0.00 0.00 2.59
967 973 4.202253 ACAGTCACACTTGCTTGAGTATGA 60.202 41.667 0.00 0.00 31.06 2.15
976 982 4.156455 TGCTTGAGTATGATTCCTTCCC 57.844 45.455 0.00 0.00 0.00 3.97
990 996 0.327591 CTTCCCTTTCCTGCTCAGCT 59.672 55.000 0.00 0.00 0.00 4.24
1032 1038 3.003763 AACCCGGACAGCCCTCTC 61.004 66.667 0.73 0.00 0.00 3.20
1128 1134 3.057548 TCGCCGAGCAGGTACGAA 61.058 61.111 0.00 0.00 43.70 3.85
1446 1452 3.902086 GCCGTCCGCCTCTACCTC 61.902 72.222 0.00 0.00 0.00 3.85
1525 1531 3.541950 AAGAAGCCGCAGCAGCTGA 62.542 57.895 27.39 0.00 40.49 4.26
1615 1621 0.529337 CGGTTGCTGAGCTGATCGAT 60.529 55.000 5.83 0.00 0.00 3.59
1648 1659 2.187946 CCAGCTGGTGGTCGATCC 59.812 66.667 25.53 0.00 42.17 3.36
1750 1765 2.541588 GCACTTCTCATTTGTGCGTGTT 60.542 45.455 0.00 0.00 45.62 3.32
1824 1839 3.059120 GTGTTTCGACCTAGTTGGCTTTC 60.059 47.826 0.00 0.00 40.22 2.62
1840 1855 5.022787 TGGCTTTCATTAGCTTGGGTTAAT 58.977 37.500 0.00 0.00 40.99 1.40
1852 1867 5.187186 AGCTTGGGTTAATTTCTAGTCGAGA 59.813 40.000 0.00 0.00 0.00 4.04
1952 1967 0.844660 ACATGCATGCAGGGAGAGAT 59.155 50.000 33.08 11.04 31.33 2.75
1994 2026 1.196127 CTAGCTGCATGTGTGTGTGTG 59.804 52.381 1.02 0.00 0.00 3.82
1995 2027 0.749091 AGCTGCATGTGTGTGTGTGT 60.749 50.000 1.02 0.00 0.00 3.72
1996 2028 0.593008 GCTGCATGTGTGTGTGTGTG 60.593 55.000 0.00 0.00 0.00 3.82
1997 2029 0.734309 CTGCATGTGTGTGTGTGTGT 59.266 50.000 0.00 0.00 0.00 3.72
1998 2030 0.450983 TGCATGTGTGTGTGTGTGTG 59.549 50.000 0.00 0.00 0.00 3.82
1999 2031 0.451383 GCATGTGTGTGTGTGTGTGT 59.549 50.000 0.00 0.00 0.00 3.72
2000 2032 1.794800 GCATGTGTGTGTGTGTGTGTG 60.795 52.381 0.00 0.00 0.00 3.82
2001 2033 1.468127 CATGTGTGTGTGTGTGTGTGT 59.532 47.619 0.00 0.00 0.00 3.72
2002 2034 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2003 2035 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2004 2036 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2005 2037 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2006 2038 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2007 2039 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2008 2040 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2009 2041 0.454285 GTGTGTGTGTGTGTGTGTGC 60.454 55.000 0.00 0.00 0.00 4.57
2010 2042 1.225991 GTGTGTGTGTGTGTGTGCG 60.226 57.895 0.00 0.00 0.00 5.34
2011 2043 1.669437 TGTGTGTGTGTGTGTGCGT 60.669 52.632 0.00 0.00 0.00 5.24
2012 2044 1.225991 GTGTGTGTGTGTGTGCGTG 60.226 57.895 0.00 0.00 0.00 5.34
2013 2045 1.669437 TGTGTGTGTGTGTGCGTGT 60.669 52.632 0.00 0.00 0.00 4.49
2014 2046 1.225991 GTGTGTGTGTGTGCGTGTG 60.226 57.895 0.00 0.00 0.00 3.82
2015 2047 1.669437 TGTGTGTGTGTGCGTGTGT 60.669 52.632 0.00 0.00 0.00 3.72
2016 2048 1.225991 GTGTGTGTGTGCGTGTGTG 60.226 57.895 0.00 0.00 0.00 3.82
2017 2049 1.669437 TGTGTGTGTGCGTGTGTGT 60.669 52.632 0.00 0.00 0.00 3.72
2018 2050 1.225991 GTGTGTGTGCGTGTGTGTG 60.226 57.895 0.00 0.00 0.00 3.82
2019 2051 1.669437 TGTGTGTGCGTGTGTGTGT 60.669 52.632 0.00 0.00 0.00 3.72
2020 2052 1.225991 GTGTGTGCGTGTGTGTGTG 60.226 57.895 0.00 0.00 0.00 3.82
2021 2053 1.669437 TGTGTGCGTGTGTGTGTGT 60.669 52.632 0.00 0.00 0.00 3.72
2022 2054 1.231296 TGTGTGCGTGTGTGTGTGTT 61.231 50.000 0.00 0.00 0.00 3.32
2023 2055 0.109964 GTGTGCGTGTGTGTGTGTTT 60.110 50.000 0.00 0.00 0.00 2.83
2024 2056 0.110010 TGTGCGTGTGTGTGTGTTTG 60.110 50.000 0.00 0.00 0.00 2.93
2025 2057 0.109964 GTGCGTGTGTGTGTGTTTGT 60.110 50.000 0.00 0.00 0.00 2.83
2026 2058 0.110010 TGCGTGTGTGTGTGTTTGTG 60.110 50.000 0.00 0.00 0.00 3.33
2027 2059 0.109964 GCGTGTGTGTGTGTTTGTGT 60.110 50.000 0.00 0.00 0.00 3.72
2028 2060 1.601091 CGTGTGTGTGTGTTTGTGTG 58.399 50.000 0.00 0.00 0.00 3.82
2029 2061 1.069568 CGTGTGTGTGTGTTTGTGTGT 60.070 47.619 0.00 0.00 0.00 3.72
2030 2062 2.315011 GTGTGTGTGTGTTTGTGTGTG 58.685 47.619 0.00 0.00 0.00 3.82
2031 2063 1.950216 TGTGTGTGTGTTTGTGTGTGT 59.050 42.857 0.00 0.00 0.00 3.72
2032 2064 2.287248 TGTGTGTGTGTTTGTGTGTGTG 60.287 45.455 0.00 0.00 0.00 3.82
2033 2065 1.950216 TGTGTGTGTTTGTGTGTGTGT 59.050 42.857 0.00 0.00 0.00 3.72
2034 2066 2.287248 TGTGTGTGTTTGTGTGTGTGTG 60.287 45.455 0.00 0.00 0.00 3.82
2035 2067 1.950216 TGTGTGTTTGTGTGTGTGTGT 59.050 42.857 0.00 0.00 0.00 3.72
2036 2068 2.287248 TGTGTGTTTGTGTGTGTGTGTG 60.287 45.455 0.00 0.00 0.00 3.82
2037 2069 1.950216 TGTGTTTGTGTGTGTGTGTGT 59.050 42.857 0.00 0.00 0.00 3.72
2038 2070 2.287248 TGTGTTTGTGTGTGTGTGTGTG 60.287 45.455 0.00 0.00 0.00 3.82
2039 2071 1.950216 TGTTTGTGTGTGTGTGTGTGT 59.050 42.857 0.00 0.00 0.00 3.72
2040 2072 2.287248 TGTTTGTGTGTGTGTGTGTGTG 60.287 45.455 0.00 0.00 0.00 3.82
2041 2073 1.598882 TTGTGTGTGTGTGTGTGTGT 58.401 45.000 0.00 0.00 0.00 3.72
2050 2082 2.070028 GTGTGTGTGTGTGTGTGTGTA 58.930 47.619 0.00 0.00 0.00 2.90
2258 2290 2.617250 GTTGCATGCAACGATTGAGA 57.383 45.000 39.20 13.05 45.24 3.27
2395 2427 6.153000 GGATTTCTGAGTACTTCTGTCCTGTA 59.847 42.308 0.00 0.00 0.00 2.74
2518 2556 8.800370 TGCATATGTTATTCTTGTTGGAGTTA 57.200 30.769 4.29 0.00 0.00 2.24
2542 2580 7.959689 ATTATCTATGATCTGTGTGCTTGTC 57.040 36.000 0.00 0.00 0.00 3.18
2550 2588 1.583404 CTGTGTGCTTGTCGTTTTTGC 59.417 47.619 0.00 0.00 0.00 3.68
2592 2630 6.643388 TCTGAAATCAGTGTGCTACATATGT 58.357 36.000 13.93 13.93 44.12 2.29
2600 2638 8.196802 TCAGTGTGCTACATATGTTTAACATC 57.803 34.615 14.77 10.04 39.88 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 1.623542 GCCTAATGGGGGTGTCGACT 61.624 60.000 17.92 0.00 35.12 4.18
122 123 2.814097 GCTTTTAGGTGCTGAAGGGTGA 60.814 50.000 0.00 0.00 0.00 4.02
190 191 1.623311 TGAGACATGGGGTACACAGTG 59.377 52.381 0.00 0.00 0.00 3.66
200 201 3.678289 TGTGAAATGACTGAGACATGGG 58.322 45.455 0.00 0.00 0.00 4.00
475 476 8.621286 GGACACATACAAGAAAGAAAGAAAGAA 58.379 33.333 0.00 0.00 0.00 2.52
476 477 7.993183 AGGACACATACAAGAAAGAAAGAAAGA 59.007 33.333 0.00 0.00 0.00 2.52
514 515 4.413087 GCTTGAGAATCTGCACAAAGATG 58.587 43.478 0.00 0.00 36.99 2.90
528 529 1.704628 TGATGGAGGTTGGCTTGAGAA 59.295 47.619 0.00 0.00 0.00 2.87
565 566 0.535335 TTGGCGCTCTCGGAATTACT 59.465 50.000 7.64 0.00 35.95 2.24
655 658 7.441890 TGCAGAAATATTTAGGACGAACAAA 57.558 32.000 0.00 0.00 0.00 2.83
733 736 0.898320 TGGTAGCAGCTGGTTCTCTC 59.102 55.000 25.47 7.01 0.00 3.20
734 737 1.352083 TTGGTAGCAGCTGGTTCTCT 58.648 50.000 25.47 9.94 0.00 3.10
735 738 1.807142 GTTTGGTAGCAGCTGGTTCTC 59.193 52.381 25.47 14.31 0.00 2.87
749 752 1.550524 TGAGCTAGCGATCTGTTTGGT 59.449 47.619 9.55 0.00 0.00 3.67
784 787 7.563906 TGATGAGGTCAATGATTACATGTGTA 58.436 34.615 9.11 0.00 36.79 2.90
817 820 3.377346 AGCACTGCTCCTACATATTCG 57.623 47.619 0.00 0.00 30.62 3.34
887 893 5.705441 TGTAGGGCATTCTCTTACACTTTTG 59.295 40.000 0.00 0.00 0.00 2.44
889 895 5.248477 TCTGTAGGGCATTCTCTTACACTTT 59.752 40.000 0.00 0.00 0.00 2.66
899 905 9.700831 ATTTATTTAACTTCTGTAGGGCATTCT 57.299 29.630 0.00 0.00 0.00 2.40
964 970 2.584498 AGCAGGAAAGGGAAGGAATCAT 59.416 45.455 0.00 0.00 0.00 2.45
967 973 1.995542 TGAGCAGGAAAGGGAAGGAAT 59.004 47.619 0.00 0.00 0.00 3.01
990 996 2.042464 GACAGGTCCATGGATCAGCTA 58.958 52.381 26.87 0.00 0.00 3.32
1032 1038 4.101448 CCGTTGCCCCCTCCAGAG 62.101 72.222 0.00 0.00 0.00 3.35
1056 1062 1.219124 GGTGATGCTGCTCGAGGAA 59.781 57.895 15.58 0.00 0.00 3.36
1555 1561 4.982701 GGGCTGGTGCTGGTTGCT 62.983 66.667 0.00 0.00 43.37 3.91
1648 1659 3.338249 CATACCGGCCAAATAGGAGATG 58.662 50.000 0.00 1.56 41.22 2.90
1718 1733 4.978083 ATGAGAAGTGCAAAGCCATAAG 57.022 40.909 0.00 0.00 0.00 1.73
1750 1765 6.208797 ACAACTGACAGTACTAGCTGATACAA 59.791 38.462 8.91 0.00 39.62 2.41
1824 1839 7.494625 TCGACTAGAAATTAACCCAAGCTAATG 59.505 37.037 0.00 0.00 0.00 1.90
1857 1872 9.391006 CCTACATGGAAGCAAATTAAACTAGTA 57.609 33.333 0.00 0.00 38.35 1.82
1888 1903 8.075574 CACTACAGCAAATCATTTTACTTGACA 58.924 33.333 0.00 0.00 0.00 3.58
1952 1967 4.141274 AGCTGTAGCAAGAGAGATCTCCTA 60.141 45.833 19.30 9.95 42.96 2.94
1994 2026 1.225991 CACGCACACACACACACAC 60.226 57.895 0.00 0.00 0.00 3.82
1995 2027 1.669437 ACACGCACACACACACACA 60.669 52.632 0.00 0.00 0.00 3.72
1996 2028 1.225991 CACACGCACACACACACAC 60.226 57.895 0.00 0.00 0.00 3.82
1997 2029 1.669437 ACACACGCACACACACACA 60.669 52.632 0.00 0.00 0.00 3.72
1998 2030 1.225991 CACACACGCACACACACAC 60.226 57.895 0.00 0.00 0.00 3.82
1999 2031 1.669437 ACACACACGCACACACACA 60.669 52.632 0.00 0.00 0.00 3.72
2000 2032 1.225991 CACACACACGCACACACAC 60.226 57.895 0.00 0.00 0.00 3.82
2001 2033 1.669437 ACACACACACGCACACACA 60.669 52.632 0.00 0.00 0.00 3.72
2002 2034 1.225991 CACACACACACGCACACAC 60.226 57.895 0.00 0.00 0.00 3.82
2003 2035 1.231296 AACACACACACACGCACACA 61.231 50.000 0.00 0.00 0.00 3.72
2004 2036 0.109964 AAACACACACACACGCACAC 60.110 50.000 0.00 0.00 0.00 3.82
2005 2037 0.110010 CAAACACACACACACGCACA 60.110 50.000 0.00 0.00 0.00 4.57
2006 2038 0.109964 ACAAACACACACACACGCAC 60.110 50.000 0.00 0.00 0.00 5.34
2007 2039 0.110010 CACAAACACACACACACGCA 60.110 50.000 0.00 0.00 0.00 5.24
2008 2040 0.109964 ACACAAACACACACACACGC 60.110 50.000 0.00 0.00 0.00 5.34
2009 2041 1.069568 ACACACAAACACACACACACG 60.070 47.619 0.00 0.00 0.00 4.49
2010 2042 2.287308 ACACACACAAACACACACACAC 60.287 45.455 0.00 0.00 0.00 3.82
2011 2043 1.950216 ACACACACAAACACACACACA 59.050 42.857 0.00 0.00 0.00 3.72
2012 2044 2.287308 ACACACACACAAACACACACAC 60.287 45.455 0.00 0.00 0.00 3.82
2013 2045 1.950216 ACACACACACAAACACACACA 59.050 42.857 0.00 0.00 0.00 3.72
2014 2046 2.287308 ACACACACACACAAACACACAC 60.287 45.455 0.00 0.00 0.00 3.82
2015 2047 1.950216 ACACACACACACAAACACACA 59.050 42.857 0.00 0.00 0.00 3.72
2016 2048 2.287308 ACACACACACACACAAACACAC 60.287 45.455 0.00 0.00 0.00 3.82
2017 2049 1.950216 ACACACACACACACAAACACA 59.050 42.857 0.00 0.00 0.00 3.72
2018 2050 2.287308 ACACACACACACACACAAACAC 60.287 45.455 0.00 0.00 0.00 3.32
2019 2051 1.950216 ACACACACACACACACAAACA 59.050 42.857 0.00 0.00 0.00 2.83
2020 2052 2.287308 ACACACACACACACACACAAAC 60.287 45.455 0.00 0.00 0.00 2.93
2021 2053 1.950216 ACACACACACACACACACAAA 59.050 42.857 0.00 0.00 0.00 2.83
2022 2054 1.265365 CACACACACACACACACACAA 59.735 47.619 0.00 0.00 0.00 3.33
2023 2055 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2024 2056 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2025 2057 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2026 2058 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2027 2059 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2028 2060 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2029 2061 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2030 2062 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2031 2063 2.289133 ACTACACACACACACACACACA 60.289 45.455 0.00 0.00 0.00 3.72
2032 2064 2.343101 ACTACACACACACACACACAC 58.657 47.619 0.00 0.00 0.00 3.82
2033 2065 2.753055 ACTACACACACACACACACA 57.247 45.000 0.00 0.00 0.00 3.72
2034 2066 2.028763 CGAACTACACACACACACACAC 59.971 50.000 0.00 0.00 0.00 3.82
2035 2067 2.263945 CGAACTACACACACACACACA 58.736 47.619 0.00 0.00 0.00 3.72
2036 2068 2.028763 CACGAACTACACACACACACAC 59.971 50.000 0.00 0.00 0.00 3.82
2037 2069 2.263945 CACGAACTACACACACACACA 58.736 47.619 0.00 0.00 0.00 3.72
2038 2070 1.005347 GCACGAACTACACACACACAC 60.005 52.381 0.00 0.00 0.00 3.82
2039 2071 1.282817 GCACGAACTACACACACACA 58.717 50.000 0.00 0.00 0.00 3.72
2040 2072 1.282817 TGCACGAACTACACACACAC 58.717 50.000 0.00 0.00 0.00 3.82
2041 2073 1.930503 CTTGCACGAACTACACACACA 59.069 47.619 0.00 0.00 0.00 3.72
2050 2082 4.449068 CAGACTTACAATCTTGCACGAACT 59.551 41.667 0.00 0.00 0.00 3.01
2193 2225 3.181414 ACCCAGTACCAGTAGTTGTACCT 60.181 47.826 8.04 0.00 38.45 3.08
2320 2352 1.473677 GCATCAAACACTGGCTGCATA 59.526 47.619 0.50 0.00 35.43 3.14
2395 2427 0.833287 ACAGCTATCCCTCGTGCATT 59.167 50.000 0.00 0.00 0.00 3.56
2518 2556 6.644181 CGACAAGCACACAGATCATAGATAAT 59.356 38.462 0.00 0.00 0.00 1.28
2542 2580 6.577427 GGTCAGACTAAATAACAGCAAAAACG 59.423 38.462 0.00 0.00 0.00 3.60
2550 2588 9.092876 GATTTCAGAGGTCAGACTAAATAACAG 57.907 37.037 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.