>input_sequence_74344
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---------------------------------------------ATGGACCTGTCGGCGAACCCGGACAGCCCTCTCTC
TGGAGGGGGCAACGGCGGCGGTTCCTCGAGCAGCATCACCTCCTCGCTTTCCGTGGTCTCAGGGGGCACTCCGCAGTCGC
CGAGCAGGTACGAAGCGCAGAAGCGGCGCGACTGGAACACGTTCGGGCAGTACCTGCGGAACCACCGGCCGCCGCTGAGC
CTGGCTCAGTGCAGCGGCGCGCACGTCCTGGAGTTCCTGCGCTACCTTGACCAGTTCGGCAAGACCAAGGTGCACGCCTC
GGCCTGCCCCTTCTTCGGCCACCCGAGCCCGCCGGCACCCTGCCCGTGCCCACTCCGCCAGGCCTGGGGCAGCCTGGACG
CCCTCGTCGGCCGCCTCCGCGCCGCCTACGAGGAGAACGGCGGCAGCCCCGAGTCCAACCCGTTCGCGGCGCGCGCCGTC
CGCCTCTACCTCCGCGAGGTCCGCGAGCACCAGGCCCGCGCACGCGGCGTCAGCTACGAGAAGAAGAAGCGCAAGAAGCC
GCAGCAGCTGACCGGCGACAGCAGCGGCAGCAGCTTCCACAGCAACCAGCACCAGCCCCCTCCCGGGGCGCCTCCCGCCG
CCGGTTGCTGA---------------------------------------------------------------------
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>chr2A_1_TraesCS2A01G382500
CATCAAATGACTACCAGTTAGAAACAAGTCGACACCCCCATTAGGCCGTACACCGACCTATCAATTAGAAAAATATTTAC
TTTTGTCATGTCACCTTTCATCTCTCACTCGGTGTCCCTGCTTCACCCTTCAGCACCTAAAAGCCCTAGCAGTACTAGCA
GTGCATCTCCTCCACTCTCTCACTGGTCACCACTGTGTACCCCATGTCTCAGTCATTTCACATCTCCCCTTTTTAGGCCA
AACAATACATCCACCACCGCCGGCATCCCCCCCTAAAAATAGAGGCAGCAGCATACAATTCCCCCACACCATCACAAACA
GATGATGAAGCTGCTGCTCTCCCAGCATCTTCCCAACCACCAGATGGACCTATGAGAGCCAGCACAAGCAACTGTTGGCT
GTTGCTGGCTACCACCACCACCGAGTAAGAAGCAACAGATATGAGCTTTTCCAGATCGCTCTCTCAAAATAACCTTTCTT
TCTTTCTTTCTTGTATGTGTCCTCTGATGTTTTCCATCTTTGTGCAGATTCTCAAGCCAACCTCCATCACCATTTGGCTT
TGCCCAGTAATTCCGAGAGCGCCAAACCAAGA--TCAGCTGCCAACACCACCAAAGGTGATTCCAAAATTTTCCTTTCCT
GAAAGATCTCCAGGTTCTTTGTTCGTCCTAAATATTTCTGCATCTACTGCTTATATAGAAAGTTAAAAGCATCAATTGCA
GTGGCGAATGGTGAGGAGAGAACCAGCTGCTACCAAACAGATCGCTAGCTCAAGTTTATATATATGTACACATGTAATCA
TTGACCTCATCATGGTTCTCGAATATGTAGGAGC---AGTGCTATTTCTTTTCTAATAGCAAGTAGTAGTTTATTTCATT
TGTTTAAGCAAACAAAAGTGTAAGAGAATGCCCTACAGAAGTTAAATAAATAGAAAATAGTTTCAGATCACAGTCACACT
TGCTTGAGTATGATTCCTTCCCTTTCCTGCTCAGCTAGCTGATCCATGGACCTGTCGGCGAACCCGGACAGCCCTCTCTC
TGGAGGGGGCAACGGCGGCGGTTCCTCGAGCAGCATCACCTCCTCGCTTTCCGTGGTCTCAGGGGGCACTCCGCAGTCGC
CGAGCAGGTACGAAGCGCAGAAGCGGCGCGACTGGAACACGTTCGGGCAGTACCTGCGGAACCACCGGCCGCCGCTGAGC
CTGGCTCAGTGCAGCGGCGCGCACGTCCTGGAGTTCCTGCGCTACCTTGACCAGTTCGGCAAGACCAAGGTGCACGCCTC
GGCCTGCCCCTTCTTCGGCCACCCGAGCCCGCCGGCACCCTGCCCGTGCCCACTCCGCCAGGCCTGGGGCAGCCTGGACG
CCCTCGTCGGCCGCCTCCGCGCCGCCTACGAGGAGAACGGCGGCAGCCCCGAGTCCAACCCGTTCGCGGCGCGCGCCGTC
CGCCTCTACCTCCGCGAGGTCCGCGAGCACCAGGCCCGCGCACGCGGCGTCAGCTACGAGAAGAAGAAGCGCAAGAAGCC
GCAGCAGCTGACCGGCGACAGCAGCGGCAGCAGCTTCCACAGCAACCAGCACCAGCCCCCTCCCGGGGCGCCTCCCGCCG
CCGGTTGCTGAGCTGATCGAT-----GACGAGGACCCGCCCCCAGCTGGTGGTCGATCC----ATCTCCTATTTGGCCGG
TATGCCAGATATATTTTATGTGCGCTCGCGTATGCATGCATGCGCGCGCATGCTTATGGCTTTGCACTTCTCATTTGTGC
GTGTTTGTATCAGCTAGTACTGTCAGTTGTCGTCGTCGAACACTGCTGCATTGCTCGTGTTTCGACCTAGTTGGCTTTCA
TTAGCTTGGGTTAATTTCTAGTCGAGATTATTACTAGTTTAATTTGCTTCCATGTAGGATCGTGTCAAGTAAAATGATTT
GCTGTAGTGTGAAGTGAAGTGAGGGGGACATGCATGCAGGGAGAGATA-----------------GGAGATCTCTCTTGC
TACAGCTAGCTGCATGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTG
TAGTTCGTGCAAGATTGTAAGTCTGTAGTGCAGTGTCCGTTCTGCGGTCTGCGCATCATGTGTCAACTCGATCTAGCATC
GCTTATTGTTTCTTGTTTTGCTTCCTATTCCGTTTCCTTTTTATGGTACCGAAAGGCAGTGATCAGGTACAACTACTGGT
ACTGGGTTTGATGTGAACGGTGCATGACAAGTTGCATGCAACGATTGAGAGGATGGCACAGTGCCTTTGCCTCGCACCAC
ATGAGGATCGCAAGCATATGCATGCATGTACTATGCAGCCAGTGTTTGATGCTGGATGCATGTGGCTTGTGGTTTTCTCA
TGGATTTCTGAGTACTTCTGTCCTGTAATGCACGAGGGATAGCTGTTTATTTCCATGTGTTCTTCTGTATTCCTGGTACT
TGAAGCATA------ATATATGCATGCATGTGATAGGGGGTTGAATGAGTTGCATATGTTATTCTTGTTGGAGTTATTAT
CTATGATCTGTGTGCTTGTCGTTTTTGCTGTTATTTAGTCTGACCTCTGAAATCAGTGTGCTACATATGTTTAACATCTC
AGT
>chr2D_1
CATCAAATGACTACCAATTAGAAACAGGTCGACACCCCCATTAGGCCGTACACCGACCTATCAATTAAAAAAATATTTAC
TTTTGTCATGTCACCTTTCATCTCTCACTCGGTGTCCCTGCTCCACCCTTCAGCACCTAAAAGCCCTAGCAGTACTAGCA
GTGCATCTCCTCCACTCTCTCACTGGTCACTACTGTGTACTCCATGTCTCAGTCATTTCACATCTCCCCTTTTTAGGCCA
AACAATACATCCACCACCCCCGGCATCCCCCCCTAAAAATAGAGGCAGCAGCATACAATTCCCCCACACCATCACAAACA
GATGATGAAGCTGCTGCTCTCCCAGCATCTTCCCAATCACCAGATGGACCTATGAGAGCCAGCACAAGCAACTGTTGGCT
GTTGCTGGCTACCACCACCACCGAGTAAGAAGCAACAGATATGAGCTTTTCCAGATCGCTCTCCCAAAATAAC----CTT
TCTTTCTTTCTTGTATGTGTCCTCTGATGTTTTCTATCTTTGTGCAGACTCTCAAGCCAACCTCCATCACCATTTGGCTT
TGCCCTGTAATTCCAAGAGCGCCAAACCAAGATCTCAGCTGCCAACACCACCAAAGGTGATTCCAAAATTTTCCTTTCCT
GAAAGATCTCCAGGTTC-TTGTTCGTCCTAAATATTTCTGCATCTACTGCTTATATAGAAAGTTAAAAGCATCAATTGCA
GTGGCGAATGGTGAG---AGAACTAGCTGCTCCCAAACAGATCGCTAGCTCAAGTTTATATATATGCACACATGTAATCA
TTGACCTCATCATGGTTCTGGAATATGTAGGAACAGTAGTGCTATTTCTTTTCTAATAGCAAGTTGTAGTTTATTTCATT
TGTTTAAGAAAAGAGAAGTGTAAGGGAAAGCCCTACAGAAGTTAATTTAATAGAAAATAGTTTCAGATCACAGTCACA-T
TGCTTGAGTCTGCTTCCTTCCTTTTCCTGCTCAGC-AGCTGATCCATGGACCTGTCGGCGAACCCGGACAGCCCTCTGTC
TGGAGGGGGCAACGGTGGCGGCTCCTCGAGCAGCATCACCTCCTCGCTTTCCGTGGCCTCAGGGGGCACTCCGCAGTCGC
CGAGCAGGTACGAGGCGCAGAAGCGGCGCGACTGGAACACGTTCGGGCAGTACCTGCGGAACCACCGGCCGCCGCTGAGC
CTGGCTCAGTGCAGCGGGGCGCACGTCCTGGAGTTCCTGCGCTACCTTGACCAGTTCGGCAAGACCAAGGTGCACGCCTC
GGCCTGCCCCTTCTTCGGCCACCCGAGCCCGCCGGCACCCTGCCCGTGCCCGCTCCGTCAGGCCTGGGGCAGCCTGGACG
CCCTCGTCGGCCGCCTCCGCGCCGCCTACGAGGAGAACGGCGGCAGCCCCGAGTCCAACCCCTTCGCTGCGCGCGCCGTC
CGCCTCTACCTTCGCGAGGTCCGCGAGCACCAGGCCCGCGCCCGCGGCGTCAGCTACGAGAAGAAGAAGCGCAAGAAGCC
GCAGCAGCTGGCCGGCGACAGCAGCAGCGGCAGCTTCCATGGCAACCAGCACCAGCCCCCTCCCGGCCCGCCTCCCGCCG
CCGGTTGCTGAGCTGATCGAGGCGACGACGACGACCCGCCCCCAGCCGGTGGTCGATCGAACGATCTCCTATTTGGCCGG
TATGCCAGATATATTTTATGTGCGCTCGCGTATGCATGCATGCGCACGCATGGTTATGGCTTTGCACTTCTCATTTGTGC
GTGTGTGTATCAGCTAGTACTGTCAGTTGTCGTCGTCGAACACTGCTGCATTGCTCGTGTTTCGACCTAGTTGGCTTTGA
TTAGCTTGGGTTAAGTTCTAGTCGAGTTTATCACTAGTTTAATTTCCTTCCATGTAGGATCGAGTCAAGTAAAATGATTT
GCTGTAGTGTGAAGTGAAGTGAGGGGGACATGCATGCAGGGAGAGAGAGAGATAA----ATGTATGGAGATCTCTCTTGC
TACAGCTAGCTGCATGTGTGTGTGT------------------------------------------------GTGTGTG
TGGTTCGTGCAAGATTGTAAGTCTGTAGTGCAGTGTCCGTTCTGCGGTCTGCGCATCATGTGTCAACTCGATCTAGCATC
GCTTATTGTTTCTTGTTTTGCTTCCTATTCCGTTTCCTTTTTATGGTACCGAAAGGCAGTGATCGGGTACAACTACTGGT
ACTGGGTTTGATGTGAACGGTGCATGACAAGTTGCATGCAACGATTGAGGGGATGGCACAGTGCCTTTGCCTCGCACCAC
ATGAGGATCGCAAGCATATGCATGCATGTACGATGCAGCCAGTGTTTGATGCTGGATGCATGTGGCTTGTGGTGTTCTCA
TGGATTTCTGAGTACTTCTGTCCTGTCATGCACGAGGGATAGCTGTTTATTTCCATGTGTTCTTCTGTATTCCTGGTACT
TGAAGCATA------GTATATGCATGCATGTGATAGGGGGTTGAATGGGTTGCATATGTTATTCTTGTTGGATTTTTTAT
CTATGATCTGTGTGCTTGTGGTTTTTGTTGTTATTTAGTCTGACCTCTGAAATCAGTGTGCTACATATGCTTAACATTTC
AGT
>chr2B_1
CATCAAATGACTACCAGTTAGAAACAGGTCGACACCCCCATTAGGCCGTACACCGACCTATCAATTAAAAAAATATTTAC
TTTTGTCATGTCACCTTTCATCTC--ACTCGGTGTCCCTGCTCCACCCTTCAGCACCTAAAAGCCCTAGCAGTACTAGCA
GTGCATCTCATCCACTCTCTCACTGGTCACTACTGTGTACTCCATGTCTCAGTCATTTCACATCTCCCCTTTTTAGGCCA
AACAATACATCCACCACCCCCGGCATCCCCCCCTAAAAATAGAGGCAGCAGCATACAATTCCCCCACACCATCACAAACA
GATGATGAAGCTGCTGCTCTCCCAGCATCTTCCCAATCACCAGATGGACCTATGAGAGCCAGCACAAGCAACTGTTGGCT
GTTGCTGGCTACCACCACCACCGAGTAAGAAGCAACAGATATGAGCTTTTCCAGATCGCTCTCCCAAATTAAC----CTT
TCTCTTTTTCTTGTATGTGTCCTCTGATGTTTTCTATCTTCGCGCAGACTCTCAAGCCAACCTCCATCACCATTTGGCTT
TGCCCTGTAATTCCGAGAGCGCCAAACCAAGAT--CAGCTTCCAACACCACCGAAGGTGATTCCAAAAATTTCCTTTCCT
GAAAGATCTCCAGGTTC-TTGTTCGTCCTAAATATTTCTGCATCTACTGCTTATATAGAAAGTTAAAAGCATCAATTGCA
GTGGCGAATGGTGAG---AGAACCAGCTGCTCCCAAACAGATCGCTAGCTCAAGTATAT----ATGCACACATGTAATCA
TTGACCTCATCATGGTTCTGGAA-ATGTAGGAAC---AGTGCTATTTCTTTTCCAATAGCAAGTTGTAGTTTATT-CATT
TGTTTAAGCAAAGAGAAGTGTAAGGGAAAGCCCTACAGAAGTTAATTTAATAGAAAATAGTTTCAGATCACAGTCACACT
TGCTTGAGTCTGCTTCCTTCCTTTTCCTGCTCAGC-AGCTGATCCATGGACCTGTCGGCGAACCCGGACAGCCCTCTGTC
TGGAGGGGGCAACGGTGGCGGCTCCTCGAGCAGCATCACCTCCTCGCTTTCCGTGGCCTCAGGGGGCACTCCGCAGTCGC
CGAGCAGGTACGAGGCGCAGAAGCGGCGCGACTGGAACACGTTCGGGCAGTACCTGCGGAACCACCGGCCGCCGCTGAGC
CTGGCTCAGTGCAGCGGGGCGCACGTCCTGGAGTTCCTGCGCTACCTTGACCAGTTCGGCAAGACCAAGGTGCACGCCTC
GGCCTGCCCCTTCTTCGGCCACCCTAGCCCGCCGGCACCCTGCCCGTGCCAGCTCCGTCAGGCCTGGGGCAGCCTGGACG
CCCTCGTCGGCCGCCTCCGCGCCGCCTACGAGGAGAACGGCGGCAGCCCCGAGTCCAACCCCTTCGCGGCGCGCGCCGTC
CGCCTCTACCTTCGCGAGGTCCGCGAGCACCAGGCCCGCGCCCGCGGCGTCAGCTACGAGAAGAAGAAGCGCAAGAAGCC
GCAGCAGCTGGCCGGCGACAGCAGCAGCGGCAGCTTCCACGGCAACCATCACCAGCCCCCTCCCGGCCCGCCTCCCGCCG
CCGGTTGCTGAGCTGATCGACGCGACGACGACGAGCCGCCCCCAGCCGGTGGTCGATCGATCGATCTCCTATTTGGCCGG
TATGCCAGATATATTTTATGTGCGCTCGCGTATGCATGCATGCGCACGCATGGTTATGGCTTTGCACTTCTCATTTGTGC
GTGTGTGTATCAGCTAGTACTGTCAGTTGTCGTCGTCGAACACTGCTGCATTGCTCGTGTTTCGACCTAGTTGGCTTTGA
TTAGCTAGGGTTAAGTTCTAGTCGAGTTTATCACTAGTTTAATTTGCTTCCATGTAGGATCGAGTCAAGTAAAATGATTT
GCTGTAGTGTGAAGTGAAGTGAGGGGGACATGCATGCAGGGAGAGAGAGAGAGAGATACATGTATGGAGATCTCTCTTGC
TACAGCTAGCTGCATGTGT------------------------------------------------------GTGTGTG
TGGTTCGTGCAAGATTGTAAGTCTGTAGTGCAGTGTCCGTTCTGCGGTCTGCGCATCATGTGTCAACTCGATCTAGAATC
GCTTATTGTTTCTTGTTTTGCTTCCTATTCCGTTTCCTTTTTATGGTACCGAAAGGCAGTGATCGGGTACAACTACTGGT
ACTGGGTTTGATGTGAACGGTGCATGACAAGTTGCATGCAACGATTGAGGGGATGGCACAGTGCCTTTGCCTCGCACCAC
ATGAGGATCGCAAGCATATGCATGCATGTACGATGCAGCCAGTGTTTGATGCTGGATGCATGTGGCTTGTGGTTTTCTCA
TGGATTTCTGAGTACTTCTGTCCTGTCATGCACGAGGGATAGCTGTTTATTTCCATGTGTTCTTCTGTATTCCTGGTACT
TGAAGCATAGTATATATATATGCATGCATGTGATAGGGGGTTGAATGAGTTGCATATGTTATTCTTGTTGGAGTTTTTAT
CTATGATCTGTGTGCTTGTGGTTTTTGTTGTTATTTAGTCTGACCTCTGAAATCAGTGTGCTACATATGCTTAACATTTC
AGT
>SNPs
--------------------------S----------------------------------------S------------
------------------------------------------S-------------------------------------
------------------------------S---------S---------------------------------------
------------------S-------------------------------------------------------------
------------------------------------S-------------------------------------------
---------------------------------------------------------------S---------SSSS---
----------------------------------S-------------S-------------------------------
-----S--------------------------------------------------------------------------
-----------------S--------------------------------------------------------------
---------------SSS-------------S----------------------------------S-------------
-------------------S------------S-------------------------------S---------------
------------S-S---------S---S----------------S-S--------------------------------
---------S--S--------S-------------S-----------------------------------------S--
---------------S-----S----------------------------------S-----------------------
-------------S------------------------------------------------------------------
-----------------S--------------------------------------------------------------
---------------------------------------------------S-----S----------------------
-------------------------------------------------------------S------------------
-----------S-----------------------------S--------------------------------------
----------S--------------S--S-----------S-------------------------SS------------
--------------------S----------S--------------S-----------S---------------------
---------------------------------------------S------S---------------------------
----S-------------------------------------------------------------------------S-
--------------S-----------S----S------------------------------S-----------------
----------------------------------------------S---------------------------------
-------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------
-S------------------------------------------------------------------------------
----------------------------------------------------------------S---------------
-------------------------------------------------S------------------------------
-------------------------------S------------------------------------------------
--------------------------S-----------------------------------------------------
---------------------------------------------------------------------------S----
-------------------S-------S-----------------------------------------S-------S--
---
>forward_996
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----------------CTTCCCTTTCCTGCTCAGCT--------------------------------------------
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>reverse_2036
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-----------------------------------GTGTGCGTGTGTGTGTGTTT-------------------------
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