Multiple sequence alignment - TraesCS2A01G379300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G379300 chr2A 100.000 2531 0 0 1 2531 622455333 622457863 0.000000e+00 4674
1 TraesCS2A01G379300 chr2A 87.907 430 52 0 2001 2430 622693907 622694336 8.080000e-140 507
2 TraesCS2A01G379300 chr2A 92.308 182 12 1 339 520 373019196 373019017 8.980000e-65 257
3 TraesCS2A01G379300 chr2D 90.909 847 57 10 548 1386 480130659 480131493 0.000000e+00 1120
4 TraesCS2A01G379300 chr2D 92.691 602 32 7 1931 2531 480132371 480132961 0.000000e+00 857
5 TraesCS2A01G379300 chr2D 84.081 691 73 15 1179 1866 480131334 480131990 1.280000e-177 632
6 TraesCS2A01G379300 chr2D 89.095 431 47 0 2001 2431 480160181 480160611 1.030000e-148 536
7 TraesCS2A01G379300 chr2D 91.803 183 11 4 339 520 59659351 59659530 4.180000e-63 252
8 TraesCS2A01G379300 chr2D 88.350 206 18 3 1108 1308 190368489 190368693 2.520000e-60 243
9 TraesCS2A01G379300 chr2B 90.591 829 59 12 560 1386 562976982 562977793 0.000000e+00 1081
10 TraesCS2A01G379300 chr2B 89.377 706 50 8 1178 1883 562977633 562978313 0.000000e+00 865
11 TraesCS2A01G379300 chr2B 92.699 589 23 1 1884 2472 562978600 562979168 0.000000e+00 832
12 TraesCS2A01G379300 chr2B 88.194 432 49 2 2001 2431 563024923 563025353 4.830000e-142 514
13 TraesCS2A01G379300 chr2B 86.408 206 21 4 1108 1308 158360018 158359815 4.240000e-53 219
14 TraesCS2A01G379300 chr3D 91.935 186 13 1 335 520 75797180 75797363 2.500000e-65 259
15 TraesCS2A01G379300 chr1A 92.308 182 12 1 339 520 208402489 208402310 8.980000e-65 257
16 TraesCS2A01G379300 chr1A 86.893 206 21 3 1108 1308 528933849 528934053 2.530000e-55 226
17 TraesCS2A01G379300 chr5A 91.803 183 13 1 338 520 22563747 22563567 1.160000e-63 254
18 TraesCS2A01G379300 chr4D 92.222 180 12 1 341 520 137946536 137946359 1.160000e-63 254
19 TraesCS2A01G379300 chr4D 90.957 188 14 2 334 520 322861061 322861246 1.500000e-62 250
20 TraesCS2A01G379300 chr4A 91.803 183 13 1 338 520 543976230 543976410 1.160000e-63 254
21 TraesCS2A01G379300 chr4A 91.005 189 13 3 339 527 377128471 377128287 4.180000e-63 252
22 TraesCS2A01G379300 chr6D 88.835 206 17 3 1108 1308 86025605 86025809 5.410000e-62 248
23 TraesCS2A01G379300 chr5B 84.545 220 32 2 1169 1387 546813893 546814111 1.520000e-52 217


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G379300 chr2A 622455333 622457863 2530 False 4674.000000 4674 100.000 1 2531 1 chr2A.!!$F1 2530
1 TraesCS2A01G379300 chr2D 480130659 480132961 2302 False 869.666667 1120 89.227 548 2531 3 chr2D.!!$F4 1983
2 TraesCS2A01G379300 chr2B 562976982 562979168 2186 False 926.000000 1081 90.889 560 2472 3 chr2B.!!$F2 1912

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
104 105 0.1023 GAGAGAGAGAAAGAGGGCGC 59.898 60.0 0.0 0.0 0.0 6.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1626 1687 0.239879 ACAATGTAAACAAGCCGGCG 59.76 50.0 23.2 10.77 0.0 6.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.470098 GATGTTCTGTGACACCATGGC 59.530 52.381 13.04 0.00 31.30 4.40
21 22 0.884259 TGTTCTGTGACACCATGGCG 60.884 55.000 13.04 4.48 0.00 5.69
22 23 0.602638 GTTCTGTGACACCATGGCGA 60.603 55.000 13.04 0.00 0.00 5.54
23 24 0.602638 TTCTGTGACACCATGGCGAC 60.603 55.000 13.04 2.95 0.00 5.19
24 25 1.004560 CTGTGACACCATGGCGACT 60.005 57.895 13.04 0.00 0.00 4.18
25 26 1.293963 CTGTGACACCATGGCGACTG 61.294 60.000 13.04 4.93 0.00 3.51
26 27 2.034879 GTGACACCATGGCGACTGG 61.035 63.158 13.04 5.32 39.80 4.00
27 28 3.127533 GACACCATGGCGACTGGC 61.128 66.667 13.04 0.00 37.27 4.85
48 49 4.794164 GAGCAATCTCGTCAGCGA 57.206 55.556 0.00 0.00 45.79 4.93
49 50 3.264666 GAGCAATCTCGTCAGCGAT 57.735 52.632 0.00 0.00 46.80 4.58
50 51 2.407521 GAGCAATCTCGTCAGCGATA 57.592 50.000 0.00 0.00 46.80 2.92
51 52 2.315011 GAGCAATCTCGTCAGCGATAG 58.685 52.381 0.00 0.00 46.80 2.08
65 66 2.126914 CGATAGCAACCGGAAGAGAG 57.873 55.000 9.46 0.00 0.00 3.20
66 67 1.676529 CGATAGCAACCGGAAGAGAGA 59.323 52.381 9.46 0.00 0.00 3.10
67 68 2.287308 CGATAGCAACCGGAAGAGAGAG 60.287 54.545 9.46 0.00 0.00 3.20
68 69 2.509166 TAGCAACCGGAAGAGAGAGA 57.491 50.000 9.46 0.00 0.00 3.10
69 70 1.181786 AGCAACCGGAAGAGAGAGAG 58.818 55.000 9.46 0.00 0.00 3.20
70 71 1.178276 GCAACCGGAAGAGAGAGAGA 58.822 55.000 9.46 0.00 0.00 3.10
71 72 1.134175 GCAACCGGAAGAGAGAGAGAG 59.866 57.143 9.46 0.00 0.00 3.20
72 73 2.717390 CAACCGGAAGAGAGAGAGAGA 58.283 52.381 9.46 0.00 0.00 3.10
73 74 2.682856 CAACCGGAAGAGAGAGAGAGAG 59.317 54.545 9.46 0.00 0.00 3.20
74 75 2.193127 ACCGGAAGAGAGAGAGAGAGA 58.807 52.381 9.46 0.00 0.00 3.10
75 76 2.170607 ACCGGAAGAGAGAGAGAGAGAG 59.829 54.545 9.46 0.00 0.00 3.20
76 77 2.434336 CCGGAAGAGAGAGAGAGAGAGA 59.566 54.545 0.00 0.00 0.00 3.10
77 78 3.493350 CCGGAAGAGAGAGAGAGAGAGAG 60.493 56.522 0.00 0.00 0.00 3.20
78 79 3.384789 CGGAAGAGAGAGAGAGAGAGAGA 59.615 52.174 0.00 0.00 0.00 3.10
79 80 4.500545 CGGAAGAGAGAGAGAGAGAGAGAG 60.501 54.167 0.00 0.00 0.00 3.20
80 81 4.651503 GGAAGAGAGAGAGAGAGAGAGAGA 59.348 50.000 0.00 0.00 0.00 3.10
81 82 5.221422 GGAAGAGAGAGAGAGAGAGAGAGAG 60.221 52.000 0.00 0.00 0.00 3.20
82 83 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
83 84 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
84 85 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
85 86 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
86 87 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
87 88 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
88 89 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
89 90 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
90 91 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
91 92 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
92 93 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
93 94 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
94 95 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
95 96 5.523588 AGAGAGAGAGAGAGAGAGAGAGAA 58.476 45.833 0.00 0.00 0.00 2.87
96 97 5.960811 AGAGAGAGAGAGAGAGAGAGAGAAA 59.039 44.000 0.00 0.00 0.00 2.52
97 98 6.098124 AGAGAGAGAGAGAGAGAGAGAGAAAG 59.902 46.154 0.00 0.00 0.00 2.62
98 99 5.960811 AGAGAGAGAGAGAGAGAGAGAAAGA 59.039 44.000 0.00 0.00 0.00 2.52
99 100 6.098124 AGAGAGAGAGAGAGAGAGAGAAAGAG 59.902 46.154 0.00 0.00 0.00 2.85
100 101 5.130145 AGAGAGAGAGAGAGAGAGAAAGAGG 59.870 48.000 0.00 0.00 0.00 3.69
101 102 4.164988 AGAGAGAGAGAGAGAGAAAGAGGG 59.835 50.000 0.00 0.00 0.00 4.30
102 103 2.952310 GAGAGAGAGAGAGAAAGAGGGC 59.048 54.545 0.00 0.00 0.00 5.19
103 104 1.676006 GAGAGAGAGAGAAAGAGGGCG 59.324 57.143 0.00 0.00 0.00 6.13
104 105 0.102300 GAGAGAGAGAAAGAGGGCGC 59.898 60.000 0.00 0.00 0.00 6.53
105 106 1.226831 GAGAGAGAAAGAGGGCGCG 60.227 63.158 0.00 0.00 0.00 6.86
106 107 2.202810 GAGAGAAAGAGGGCGCGG 60.203 66.667 8.83 0.00 0.00 6.46
107 108 3.724914 GAGAGAAAGAGGGCGCGGG 62.725 68.421 8.83 0.00 0.00 6.13
108 109 4.840005 GAGAAAGAGGGCGCGGGG 62.840 72.222 8.83 0.00 0.00 5.73
120 121 3.474570 GCGGGGCCTCTGTCTGAT 61.475 66.667 0.00 0.00 0.00 2.90
121 122 2.503061 CGGGGCCTCTGTCTGATG 59.497 66.667 0.00 0.00 0.00 3.07
122 123 2.191641 GGGGCCTCTGTCTGATGC 59.808 66.667 0.84 0.00 35.90 3.91
123 124 2.202987 GGGCCTCTGTCTGATGCG 60.203 66.667 0.84 0.00 37.22 4.73
124 125 2.202987 GGCCTCTGTCTGATGCGG 60.203 66.667 0.00 0.00 37.22 5.69
125 126 2.202987 GCCTCTGTCTGATGCGGG 60.203 66.667 0.00 0.00 0.00 6.13
126 127 2.202987 CCTCTGTCTGATGCGGGC 60.203 66.667 0.00 0.00 0.00 6.13
127 128 2.202987 CTCTGTCTGATGCGGGCC 60.203 66.667 0.00 0.00 0.00 5.80
128 129 3.746949 CTCTGTCTGATGCGGGCCC 62.747 68.421 13.57 13.57 0.00 5.80
129 130 4.100084 CTGTCTGATGCGGGCCCA 62.100 66.667 24.92 2.47 0.00 5.36
130 131 4.408821 TGTCTGATGCGGGCCCAC 62.409 66.667 24.92 14.12 0.00 4.61
141 142 4.960866 GGCCCACCGGGTCGTTTT 62.961 66.667 6.32 0.00 46.51 2.43
142 143 3.666253 GCCCACCGGGTCGTTTTG 61.666 66.667 6.32 0.00 46.51 2.44
143 144 2.111460 CCCACCGGGTCGTTTTGA 59.889 61.111 6.32 0.00 38.25 2.69
151 152 4.036977 GTCGTTTTGACCAGCCGA 57.963 55.556 0.00 0.00 42.04 5.54
152 153 2.540145 GTCGTTTTGACCAGCCGAT 58.460 52.632 0.00 0.00 42.04 4.18
153 154 0.165944 GTCGTTTTGACCAGCCGATG 59.834 55.000 0.00 0.00 42.04 3.84
154 155 0.250124 TCGTTTTGACCAGCCGATGT 60.250 50.000 0.00 0.00 0.00 3.06
155 156 0.165944 CGTTTTGACCAGCCGATGTC 59.834 55.000 0.00 0.00 0.00 3.06
156 157 1.234821 GTTTTGACCAGCCGATGTCA 58.765 50.000 0.00 0.00 39.61 3.58
157 158 1.606668 GTTTTGACCAGCCGATGTCAA 59.393 47.619 1.23 1.23 46.60 3.18
158 159 3.715871 TTGACCAGCCGATGTCAAA 57.284 47.368 2.82 0.00 45.64 2.69
159 160 1.234821 TTGACCAGCCGATGTCAAAC 58.765 50.000 2.82 0.00 45.64 2.93
160 161 0.948623 TGACCAGCCGATGTCAAACG 60.949 55.000 0.00 0.00 38.48 3.60
165 166 2.867472 CCGATGTCAAACGGTGCC 59.133 61.111 11.92 0.00 43.53 5.01
166 167 2.474266 CGATGTCAAACGGTGCCG 59.526 61.111 9.29 9.29 46.03 5.69
186 187 2.349755 GGCCAAGCCGTTAGTCCA 59.650 61.111 0.00 0.00 39.62 4.02
187 188 2.038837 GGCCAAGCCGTTAGTCCAC 61.039 63.158 0.00 0.00 39.62 4.02
188 189 1.302192 GCCAAGCCGTTAGTCCACA 60.302 57.895 0.00 0.00 0.00 4.17
189 190 0.676782 GCCAAGCCGTTAGTCCACAT 60.677 55.000 0.00 0.00 0.00 3.21
190 191 1.406341 GCCAAGCCGTTAGTCCACATA 60.406 52.381 0.00 0.00 0.00 2.29
191 192 2.937873 GCCAAGCCGTTAGTCCACATAA 60.938 50.000 0.00 0.00 0.00 1.90
192 193 2.936498 CCAAGCCGTTAGTCCACATAAG 59.064 50.000 0.00 0.00 0.00 1.73
193 194 3.596214 CAAGCCGTTAGTCCACATAAGT 58.404 45.455 0.00 0.00 0.00 2.24
194 195 3.247006 AGCCGTTAGTCCACATAAGTG 57.753 47.619 0.00 0.00 45.47 3.16
195 196 2.565834 AGCCGTTAGTCCACATAAGTGT 59.434 45.455 0.00 0.00 44.39 3.55
196 197 3.007614 AGCCGTTAGTCCACATAAGTGTT 59.992 43.478 0.00 0.00 44.39 3.32
197 198 3.749609 GCCGTTAGTCCACATAAGTGTTT 59.250 43.478 0.00 0.00 44.39 2.83
198 199 4.214758 GCCGTTAGTCCACATAAGTGTTTT 59.785 41.667 0.00 0.00 44.39 2.43
199 200 5.409214 GCCGTTAGTCCACATAAGTGTTTTA 59.591 40.000 0.00 0.00 44.39 1.52
200 201 6.093082 GCCGTTAGTCCACATAAGTGTTTTAT 59.907 38.462 0.00 0.00 44.39 1.40
201 202 7.461107 CCGTTAGTCCACATAAGTGTTTTATG 58.539 38.462 5.59 5.59 44.39 1.90
202 203 6.959311 CGTTAGTCCACATAAGTGTTTTATGC 59.041 38.462 6.78 0.00 44.39 3.14
203 204 7.360522 CGTTAGTCCACATAAGTGTTTTATGCA 60.361 37.037 6.78 0.00 44.39 3.96
204 205 6.892658 AGTCCACATAAGTGTTTTATGCAA 57.107 33.333 0.00 0.00 44.39 4.08
205 206 7.283625 AGTCCACATAAGTGTTTTATGCAAA 57.716 32.000 0.00 0.00 44.39 3.68
206 207 7.721402 AGTCCACATAAGTGTTTTATGCAAAA 58.279 30.769 0.00 0.00 44.39 2.44
207 208 8.200792 AGTCCACATAAGTGTTTTATGCAAAAA 58.799 29.630 0.00 0.00 44.39 1.94
232 233 6.870971 AAAAGTTTACTAAAGATGCGGTGA 57.129 33.333 0.00 0.00 0.00 4.02
233 234 7.448748 AAAAGTTTACTAAAGATGCGGTGAT 57.551 32.000 0.00 0.00 0.00 3.06
234 235 7.448748 AAAGTTTACTAAAGATGCGGTGATT 57.551 32.000 0.00 0.00 0.00 2.57
235 236 7.448748 AAGTTTACTAAAGATGCGGTGATTT 57.551 32.000 0.00 0.00 0.00 2.17
236 237 7.448748 AGTTTACTAAAGATGCGGTGATTTT 57.551 32.000 0.00 0.00 0.00 1.82
237 238 7.882179 AGTTTACTAAAGATGCGGTGATTTTT 58.118 30.769 0.00 0.00 0.00 1.94
238 239 8.021396 AGTTTACTAAAGATGCGGTGATTTTTC 58.979 33.333 0.00 0.00 0.00 2.29
239 240 5.957842 ACTAAAGATGCGGTGATTTTTCA 57.042 34.783 0.00 0.00 0.00 2.69
240 241 6.325919 ACTAAAGATGCGGTGATTTTTCAA 57.674 33.333 0.00 0.00 0.00 2.69
241 242 6.149633 ACTAAAGATGCGGTGATTTTTCAAC 58.850 36.000 0.00 0.00 0.00 3.18
249 250 5.291293 CGGTGATTTTTCAACGGATTACT 57.709 39.130 5.55 0.00 45.97 2.24
250 251 6.411630 CGGTGATTTTTCAACGGATTACTA 57.588 37.500 5.55 0.00 45.97 1.82
251 252 6.833839 CGGTGATTTTTCAACGGATTACTAA 58.166 36.000 5.55 0.00 45.97 2.24
252 253 6.739550 CGGTGATTTTTCAACGGATTACTAAC 59.260 38.462 5.55 0.00 45.97 2.34
253 254 7.360607 CGGTGATTTTTCAACGGATTACTAACT 60.361 37.037 5.55 0.00 45.97 2.24
254 255 8.938906 GGTGATTTTTCAACGGATTACTAACTA 58.061 33.333 0.00 0.00 0.00 2.24
255 256 9.968743 GTGATTTTTCAACGGATTACTAACTAG 57.031 33.333 0.00 0.00 0.00 2.57
256 257 9.158233 TGATTTTTCAACGGATTACTAACTAGG 57.842 33.333 0.00 0.00 0.00 3.02
257 258 9.159364 GATTTTTCAACGGATTACTAACTAGGT 57.841 33.333 0.00 0.00 0.00 3.08
258 259 7.894376 TTTTCAACGGATTACTAACTAGGTG 57.106 36.000 0.00 0.00 0.00 4.00
259 260 6.839124 TTCAACGGATTACTAACTAGGTGA 57.161 37.500 0.00 0.00 0.00 4.02
260 261 7.414222 TTCAACGGATTACTAACTAGGTGAT 57.586 36.000 0.00 0.00 0.00 3.06
261 262 7.414222 TCAACGGATTACTAACTAGGTGATT 57.586 36.000 0.00 0.00 0.00 2.57
262 263 7.844009 TCAACGGATTACTAACTAGGTGATTT 58.156 34.615 0.00 0.00 0.00 2.17
263 264 8.316214 TCAACGGATTACTAACTAGGTGATTTT 58.684 33.333 0.00 0.00 0.00 1.82
264 265 8.601476 CAACGGATTACTAACTAGGTGATTTTC 58.399 37.037 0.00 0.00 0.00 2.29
265 266 8.075761 ACGGATTACTAACTAGGTGATTTTCT 57.924 34.615 0.00 0.00 0.00 2.52
266 267 7.980099 ACGGATTACTAACTAGGTGATTTTCTG 59.020 37.037 0.00 0.00 0.00 3.02
267 268 7.042658 CGGATTACTAACTAGGTGATTTTCTGC 60.043 40.741 0.00 0.00 0.00 4.26
268 269 7.769044 GGATTACTAACTAGGTGATTTTCTGCA 59.231 37.037 0.00 0.00 0.00 4.41
269 270 9.162764 GATTACTAACTAGGTGATTTTCTGCAA 57.837 33.333 0.00 0.00 0.00 4.08
270 271 8.911918 TTACTAACTAGGTGATTTTCTGCAAA 57.088 30.769 0.00 0.00 0.00 3.68
271 272 7.203255 ACTAACTAGGTGATTTTCTGCAAAC 57.797 36.000 0.00 0.00 0.00 2.93
272 273 5.453567 AACTAGGTGATTTTCTGCAAACC 57.546 39.130 0.00 0.00 0.00 3.27
273 274 4.469657 ACTAGGTGATTTTCTGCAAACCA 58.530 39.130 0.00 0.00 0.00 3.67
274 275 4.892934 ACTAGGTGATTTTCTGCAAACCAA 59.107 37.500 0.00 0.00 0.00 3.67
275 276 4.326504 AGGTGATTTTCTGCAAACCAAG 57.673 40.909 0.00 0.00 0.00 3.61
276 277 2.802247 GGTGATTTTCTGCAAACCAAGC 59.198 45.455 0.00 0.00 0.00 4.01
277 278 2.472488 GTGATTTTCTGCAAACCAAGCG 59.528 45.455 0.00 0.00 33.85 4.68
278 279 1.456923 GATTTTCTGCAAACCAAGCGC 59.543 47.619 0.00 0.00 33.85 5.92
279 280 0.174389 TTTTCTGCAAACCAAGCGCA 59.826 45.000 11.47 0.00 33.85 6.09
280 281 0.174389 TTTCTGCAAACCAAGCGCAA 59.826 45.000 11.47 0.00 34.75 4.85
281 282 0.174389 TTCTGCAAACCAAGCGCAAA 59.826 45.000 11.47 0.00 34.75 3.68
282 283 0.388659 TCTGCAAACCAAGCGCAAAT 59.611 45.000 11.47 0.00 34.75 2.32
283 284 1.611006 TCTGCAAACCAAGCGCAAATA 59.389 42.857 11.47 0.00 34.75 1.40
284 285 2.230992 TCTGCAAACCAAGCGCAAATAT 59.769 40.909 11.47 0.00 34.75 1.28
285 286 2.995258 CTGCAAACCAAGCGCAAATATT 59.005 40.909 11.47 0.00 34.75 1.28
286 287 2.735663 TGCAAACCAAGCGCAAATATTG 59.264 40.909 11.47 10.44 31.46 1.90
287 288 2.736192 GCAAACCAAGCGCAAATATTGT 59.264 40.909 11.47 0.00 0.00 2.71
288 289 3.923461 GCAAACCAAGCGCAAATATTGTA 59.077 39.130 11.47 0.00 0.00 2.41
289 290 4.031652 GCAAACCAAGCGCAAATATTGTAG 59.968 41.667 11.47 0.00 0.00 2.74
290 291 5.160641 CAAACCAAGCGCAAATATTGTAGT 58.839 37.500 11.47 0.00 0.00 2.73
291 292 5.385509 AACCAAGCGCAAATATTGTAGTT 57.614 34.783 11.47 2.82 0.00 2.24
292 293 4.732784 ACCAAGCGCAAATATTGTAGTTG 58.267 39.130 11.47 0.00 36.87 3.16
293 294 4.217550 ACCAAGCGCAAATATTGTAGTTGT 59.782 37.500 11.47 0.00 36.25 3.32
294 295 4.793216 CCAAGCGCAAATATTGTAGTTGTC 59.207 41.667 11.47 0.00 36.25 3.18
295 296 5.391950 CCAAGCGCAAATATTGTAGTTGTCT 60.392 40.000 11.47 0.00 36.25 3.41
296 297 5.221891 AGCGCAAATATTGTAGTTGTCTG 57.778 39.130 11.47 0.00 36.25 3.51
297 298 3.786048 GCGCAAATATTGTAGTTGTCTGC 59.214 43.478 0.30 0.00 36.25 4.26
298 299 4.437390 GCGCAAATATTGTAGTTGTCTGCT 60.437 41.667 0.30 0.00 36.25 4.24
299 300 5.631026 CGCAAATATTGTAGTTGTCTGCTT 58.369 37.500 0.00 0.00 36.25 3.91
300 301 6.086222 CGCAAATATTGTAGTTGTCTGCTTT 58.914 36.000 0.00 0.00 36.25 3.51
301 302 6.582295 CGCAAATATTGTAGTTGTCTGCTTTT 59.418 34.615 0.00 0.00 36.25 2.27
302 303 7.748683 CGCAAATATTGTAGTTGTCTGCTTTTA 59.251 33.333 0.00 0.00 36.25 1.52
303 304 9.405587 GCAAATATTGTAGTTGTCTGCTTTTAA 57.594 29.630 0.00 0.00 36.25 1.52
307 308 6.371809 TTGTAGTTGTCTGCTTTTAACTGG 57.628 37.500 0.00 0.00 35.26 4.00
308 309 5.433526 TGTAGTTGTCTGCTTTTAACTGGT 58.566 37.500 0.00 0.00 35.26 4.00
309 310 5.883673 TGTAGTTGTCTGCTTTTAACTGGTT 59.116 36.000 0.00 0.00 35.26 3.67
310 311 5.500645 AGTTGTCTGCTTTTAACTGGTTC 57.499 39.130 0.00 0.00 32.56 3.62
311 312 4.947388 AGTTGTCTGCTTTTAACTGGTTCA 59.053 37.500 0.00 0.00 32.56 3.18
312 313 5.417580 AGTTGTCTGCTTTTAACTGGTTCAA 59.582 36.000 0.00 0.00 32.56 2.69
313 314 5.499139 TGTCTGCTTTTAACTGGTTCAAG 57.501 39.130 0.00 0.00 0.00 3.02
314 315 4.338118 TGTCTGCTTTTAACTGGTTCAAGG 59.662 41.667 7.16 0.00 0.00 3.61
315 316 3.317993 TCTGCTTTTAACTGGTTCAAGGC 59.682 43.478 7.30 7.30 31.90 4.35
316 317 3.027412 TGCTTTTAACTGGTTCAAGGCA 58.973 40.909 11.30 11.30 36.75 4.75
317 318 3.449018 TGCTTTTAACTGGTTCAAGGCAA 59.551 39.130 12.44 1.07 36.36 4.52
318 319 4.100808 TGCTTTTAACTGGTTCAAGGCAAT 59.899 37.500 12.44 0.00 36.36 3.56
319 320 4.448732 GCTTTTAACTGGTTCAAGGCAATG 59.551 41.667 8.79 0.00 31.68 2.82
320 321 5.738783 GCTTTTAACTGGTTCAAGGCAATGA 60.739 40.000 8.79 0.00 31.68 2.57
321 322 5.860941 TTTAACTGGTTCAAGGCAATGAA 57.139 34.783 2.09 2.09 36.99 2.57
322 323 5.860941 TTAACTGGTTCAAGGCAATGAAA 57.139 34.783 7.23 0.00 40.76 2.69
323 324 4.326504 AACTGGTTCAAGGCAATGAAAG 57.673 40.909 7.23 5.56 40.76 2.62
324 325 2.036346 ACTGGTTCAAGGCAATGAAAGC 59.964 45.455 7.23 3.63 40.76 3.51
325 326 1.000385 TGGTTCAAGGCAATGAAAGCG 60.000 47.619 7.23 0.00 40.76 4.68
326 327 1.000274 GGTTCAAGGCAATGAAAGCGT 60.000 47.619 7.23 0.00 40.76 5.07
327 328 2.319472 GTTCAAGGCAATGAAAGCGTC 58.681 47.619 7.23 0.00 40.76 5.19
328 329 1.603456 TCAAGGCAATGAAAGCGTCA 58.397 45.000 0.00 0.00 41.67 4.35
329 330 1.536766 TCAAGGCAATGAAAGCGTCAG 59.463 47.619 0.00 0.00 40.43 3.51
330 331 0.242017 AAGGCAATGAAAGCGTCAGC 59.758 50.000 0.00 0.00 40.43 4.26
343 344 3.850657 GCGTCAGCTCATTGATAAGAC 57.149 47.619 0.00 0.00 41.01 3.01
344 345 3.452474 GCGTCAGCTCATTGATAAGACT 58.548 45.455 9.41 0.00 41.01 3.24
345 346 4.611943 GCGTCAGCTCATTGATAAGACTA 58.388 43.478 9.41 0.00 41.01 2.59
346 347 4.679197 GCGTCAGCTCATTGATAAGACTAG 59.321 45.833 9.41 0.00 41.01 2.57
347 348 5.734786 GCGTCAGCTCATTGATAAGACTAGT 60.735 44.000 0.00 0.00 41.01 2.57
348 349 5.912396 CGTCAGCTCATTGATAAGACTAGTC 59.088 44.000 15.41 15.41 0.00 2.59
349 350 6.458888 CGTCAGCTCATTGATAAGACTAGTCA 60.459 42.308 24.44 5.48 0.00 3.41
350 351 6.695278 GTCAGCTCATTGATAAGACTAGTCAC 59.305 42.308 24.44 12.68 0.00 3.67
351 352 6.378280 TCAGCTCATTGATAAGACTAGTCACA 59.622 38.462 24.44 14.87 0.00 3.58
352 353 6.696583 CAGCTCATTGATAAGACTAGTCACAG 59.303 42.308 24.44 8.40 0.00 3.66
353 354 6.379703 AGCTCATTGATAAGACTAGTCACAGT 59.620 38.462 24.44 12.13 0.00 3.55
354 355 7.558081 AGCTCATTGATAAGACTAGTCACAGTA 59.442 37.037 24.44 11.04 0.00 2.74
355 356 7.860373 GCTCATTGATAAGACTAGTCACAGTAG 59.140 40.741 24.44 14.97 0.00 2.57
356 357 8.226819 TCATTGATAAGACTAGTCACAGTAGG 57.773 38.462 24.44 7.91 0.00 3.18
357 358 8.053355 TCATTGATAAGACTAGTCACAGTAGGA 58.947 37.037 24.44 9.96 0.00 2.94
358 359 8.687242 CATTGATAAGACTAGTCACAGTAGGAA 58.313 37.037 24.44 7.21 0.00 3.36
359 360 7.867305 TGATAAGACTAGTCACAGTAGGAAG 57.133 40.000 24.44 0.00 0.00 3.46
360 361 7.403671 TGATAAGACTAGTCACAGTAGGAAGT 58.596 38.462 24.44 0.00 0.00 3.01
361 362 8.546322 TGATAAGACTAGTCACAGTAGGAAGTA 58.454 37.037 24.44 0.62 0.00 2.24
362 363 8.967664 ATAAGACTAGTCACAGTAGGAAGTAG 57.032 38.462 24.44 0.00 0.00 2.57
363 364 5.187687 AGACTAGTCACAGTAGGAAGTAGC 58.812 45.833 24.44 0.00 0.00 3.58
364 365 5.045432 AGACTAGTCACAGTAGGAAGTAGCT 60.045 44.000 24.44 0.00 0.00 3.32
365 366 5.572252 ACTAGTCACAGTAGGAAGTAGCTT 58.428 41.667 0.00 0.00 0.00 3.74
366 367 6.719301 ACTAGTCACAGTAGGAAGTAGCTTA 58.281 40.000 0.00 0.00 0.00 3.09
367 368 6.824704 ACTAGTCACAGTAGGAAGTAGCTTAG 59.175 42.308 0.00 0.00 0.00 2.18
368 369 5.817784 AGTCACAGTAGGAAGTAGCTTAGA 58.182 41.667 0.00 0.00 0.00 2.10
369 370 5.883673 AGTCACAGTAGGAAGTAGCTTAGAG 59.116 44.000 0.00 0.00 0.00 2.43
370 371 5.648960 GTCACAGTAGGAAGTAGCTTAGAGT 59.351 44.000 0.00 0.00 0.00 3.24
371 372 6.822676 GTCACAGTAGGAAGTAGCTTAGAGTA 59.177 42.308 0.00 0.00 0.00 2.59
372 373 7.011669 GTCACAGTAGGAAGTAGCTTAGAGTAG 59.988 44.444 0.00 0.00 0.00 2.57
373 374 6.824704 CACAGTAGGAAGTAGCTTAGAGTAGT 59.175 42.308 0.00 0.00 0.00 2.73
374 375 7.986320 CACAGTAGGAAGTAGCTTAGAGTAGTA 59.014 40.741 0.00 0.00 0.00 1.82
375 376 8.547173 ACAGTAGGAAGTAGCTTAGAGTAGTAA 58.453 37.037 0.00 0.00 0.00 2.24
376 377 8.829612 CAGTAGGAAGTAGCTTAGAGTAGTAAC 58.170 40.741 0.00 0.00 0.00 2.50
377 378 8.547173 AGTAGGAAGTAGCTTAGAGTAGTAACA 58.453 37.037 0.00 0.00 0.00 2.41
378 379 9.341078 GTAGGAAGTAGCTTAGAGTAGTAACAT 57.659 37.037 0.00 0.00 0.00 2.71
379 380 8.228035 AGGAAGTAGCTTAGAGTAGTAACATG 57.772 38.462 0.00 0.00 0.00 3.21
380 381 7.835181 AGGAAGTAGCTTAGAGTAGTAACATGT 59.165 37.037 0.00 0.00 0.00 3.21
381 382 9.118300 GGAAGTAGCTTAGAGTAGTAACATGTA 57.882 37.037 0.00 0.00 0.00 2.29
414 415 9.869667 ACTAGTCTATGTTACTATCTCCACAAT 57.130 33.333 0.00 0.00 0.00 2.71
416 417 7.957002 AGTCTATGTTACTATCTCCACAATGG 58.043 38.462 0.00 0.00 39.43 3.16
417 418 7.015682 AGTCTATGTTACTATCTCCACAATGGG 59.984 40.741 0.00 0.00 38.32 4.00
418 419 5.975988 ATGTTACTATCTCCACAATGGGT 57.024 39.130 0.00 0.00 38.32 4.51
419 420 8.008332 TCTATGTTACTATCTCCACAATGGGTA 58.992 37.037 0.00 0.00 38.32 3.69
420 421 6.479972 TGTTACTATCTCCACAATGGGTAG 57.520 41.667 0.00 0.00 38.32 3.18
421 422 5.962031 TGTTACTATCTCCACAATGGGTAGT 59.038 40.000 10.91 10.91 38.32 2.73
422 423 7.127405 TGTTACTATCTCCACAATGGGTAGTA 58.873 38.462 0.00 3.98 38.32 1.82
423 424 7.620491 TGTTACTATCTCCACAATGGGTAGTAA 59.380 37.037 16.11 16.11 38.68 2.24
424 425 6.481434 ACTATCTCCACAATGGGTAGTAAC 57.519 41.667 0.00 0.00 38.32 2.50
425 426 3.880047 TCTCCACAATGGGTAGTAACG 57.120 47.619 0.00 0.00 38.32 3.18
426 427 3.167485 TCTCCACAATGGGTAGTAACGT 58.833 45.455 0.00 0.00 38.32 3.99
427 428 4.343231 TCTCCACAATGGGTAGTAACGTA 58.657 43.478 0.00 0.00 38.32 3.57
428 429 4.957954 TCTCCACAATGGGTAGTAACGTAT 59.042 41.667 0.00 0.00 38.32 3.06
429 430 5.013568 TCCACAATGGGTAGTAACGTATG 57.986 43.478 0.00 0.00 38.32 2.39
430 431 4.467082 TCCACAATGGGTAGTAACGTATGT 59.533 41.667 0.00 0.00 38.32 2.29
431 432 4.569162 CCACAATGGGTAGTAACGTATGTG 59.431 45.833 8.22 8.22 32.67 3.21
432 433 5.172934 CACAATGGGTAGTAACGTATGTGT 58.827 41.667 0.00 0.00 0.00 3.72
433 434 5.640357 CACAATGGGTAGTAACGTATGTGTT 59.360 40.000 0.00 0.00 35.86 3.32
434 435 5.640357 ACAATGGGTAGTAACGTATGTGTTG 59.360 40.000 0.00 0.00 33.32 3.33
435 436 4.870123 TGGGTAGTAACGTATGTGTTGT 57.130 40.909 0.00 0.00 33.32 3.32
436 437 4.558178 TGGGTAGTAACGTATGTGTTGTG 58.442 43.478 0.00 0.00 33.32 3.33
437 438 4.039004 TGGGTAGTAACGTATGTGTTGTGT 59.961 41.667 0.00 0.00 33.32 3.72
438 439 4.622740 GGGTAGTAACGTATGTGTTGTGTC 59.377 45.833 0.00 0.00 33.32 3.67
439 440 5.221880 GGTAGTAACGTATGTGTTGTGTCA 58.778 41.667 0.00 0.00 33.32 3.58
440 441 5.865552 GGTAGTAACGTATGTGTTGTGTCAT 59.134 40.000 0.00 0.00 33.32 3.06
441 442 5.839262 AGTAACGTATGTGTTGTGTCATG 57.161 39.130 0.00 0.00 33.32 3.07
442 443 3.536158 AACGTATGTGTTGTGTCATGC 57.464 42.857 0.00 0.00 0.00 4.06
443 444 2.488952 ACGTATGTGTTGTGTCATGCA 58.511 42.857 0.00 0.00 0.00 3.96
444 445 3.073678 ACGTATGTGTTGTGTCATGCAT 58.926 40.909 0.00 0.00 0.00 3.96
445 446 3.125146 ACGTATGTGTTGTGTCATGCATC 59.875 43.478 0.00 0.00 0.00 3.91
446 447 3.124976 CGTATGTGTTGTGTCATGCATCA 59.875 43.478 0.00 0.00 0.00 3.07
447 448 3.564235 ATGTGTTGTGTCATGCATCAC 57.436 42.857 10.76 10.76 35.43 3.06
448 449 2.574450 TGTGTTGTGTCATGCATCACT 58.426 42.857 16.78 0.00 35.82 3.41
449 450 2.950975 TGTGTTGTGTCATGCATCACTT 59.049 40.909 16.78 0.00 35.82 3.16
450 451 3.003585 TGTGTTGTGTCATGCATCACTTC 59.996 43.478 16.78 11.17 35.82 3.01
451 452 3.003585 GTGTTGTGTCATGCATCACTTCA 59.996 43.478 16.78 13.00 35.82 3.02
452 453 3.822167 TGTTGTGTCATGCATCACTTCAT 59.178 39.130 16.78 0.00 35.82 2.57
453 454 4.278919 TGTTGTGTCATGCATCACTTCATT 59.721 37.500 16.78 0.00 35.82 2.57
454 455 5.221283 TGTTGTGTCATGCATCACTTCATTT 60.221 36.000 16.78 0.00 35.82 2.32
455 456 6.016443 TGTTGTGTCATGCATCACTTCATTTA 60.016 34.615 16.78 0.00 35.82 1.40
456 457 6.762702 TGTGTCATGCATCACTTCATTTAT 57.237 33.333 16.78 0.00 35.82 1.40
457 458 7.160547 TGTGTCATGCATCACTTCATTTATT 57.839 32.000 16.78 0.00 35.82 1.40
458 459 8.278729 TGTGTCATGCATCACTTCATTTATTA 57.721 30.769 16.78 0.00 35.82 0.98
459 460 8.905850 TGTGTCATGCATCACTTCATTTATTAT 58.094 29.630 16.78 0.00 35.82 1.28
522 523 7.899648 ACAGTAACTAGCTATGTTACCATCT 57.100 36.000 25.92 14.84 46.31 2.90
523 524 8.991783 ACAGTAACTAGCTATGTTACCATCTA 57.008 34.615 25.92 5.89 46.31 1.98
524 525 9.589461 ACAGTAACTAGCTATGTTACCATCTAT 57.411 33.333 25.92 14.18 46.31 1.98
525 526 9.847706 CAGTAACTAGCTATGTTACCATCTATG 57.152 37.037 25.92 18.62 46.31 2.23
526 527 9.589461 AGTAACTAGCTATGTTACCATCTATGT 57.411 33.333 25.92 13.30 46.31 2.29
530 531 9.589461 ACTAGCTATGTTACCATCTATGTTACT 57.411 33.333 0.00 0.00 32.29 2.24
538 539 9.197306 TGTTACCATCTATGTTACTATCAGTGT 57.803 33.333 0.00 0.00 0.00 3.55
539 540 9.464714 GTTACCATCTATGTTACTATCAGTGTG 57.535 37.037 0.00 0.00 0.00 3.82
540 541 7.055667 ACCATCTATGTTACTATCAGTGTGG 57.944 40.000 0.00 0.00 0.00 4.17
541 542 6.042093 ACCATCTATGTTACTATCAGTGTGGG 59.958 42.308 0.00 0.00 0.00 4.61
542 543 6.042093 CCATCTATGTTACTATCAGTGTGGGT 59.958 42.308 0.00 0.00 0.00 4.51
543 544 7.232737 CCATCTATGTTACTATCAGTGTGGGTA 59.767 40.741 0.00 0.00 0.00 3.69
544 545 7.818997 TCTATGTTACTATCAGTGTGGGTAG 57.181 40.000 0.00 0.00 0.00 3.18
545 546 7.351952 TCTATGTTACTATCAGTGTGGGTAGT 58.648 38.462 0.00 0.00 0.00 2.73
546 547 5.909621 TGTTACTATCAGTGTGGGTAGTC 57.090 43.478 0.00 0.00 0.00 2.59
547 548 5.577100 TGTTACTATCAGTGTGGGTAGTCT 58.423 41.667 0.00 0.00 0.00 3.24
548 549 6.724351 TGTTACTATCAGTGTGGGTAGTCTA 58.276 40.000 0.00 0.00 0.00 2.59
549 550 7.177184 TGTTACTATCAGTGTGGGTAGTCTAA 58.823 38.462 0.00 0.00 0.00 2.10
558 559 8.822805 TCAGTGTGGGTAGTCTAAGAAAAATAT 58.177 33.333 0.00 0.00 0.00 1.28
592 593 4.240888 CCGATCATATACTGGAAGCTGTG 58.759 47.826 0.00 0.00 37.60 3.66
600 601 1.770110 TGGAAGCTGTGGGAGGTGT 60.770 57.895 0.00 0.00 30.84 4.16
757 762 4.620437 GTGCGTGTCACTACGTCA 57.380 55.556 0.00 0.00 45.36 4.35
758 763 2.876052 GTGCGTGTCACTACGTCAA 58.124 52.632 0.00 0.00 45.36 3.18
759 764 0.776451 GTGCGTGTCACTACGTCAAG 59.224 55.000 0.00 0.00 45.36 3.02
760 765 0.382873 TGCGTGTCACTACGTCAAGT 59.617 50.000 0.00 0.00 45.36 3.16
764 769 2.466571 CGTGTCACTACGTCAAGTCAAC 59.533 50.000 0.00 0.00 39.13 3.18
782 787 2.816087 CAACACCACCTCCTCATCAAAG 59.184 50.000 0.00 0.00 0.00 2.77
819 832 3.243201 CCAACTCCAAACAGAACAGAAGC 60.243 47.826 0.00 0.00 0.00 3.86
826 839 2.543777 ACAGAACAGAAGCCGCTTTA 57.456 45.000 7.16 0.00 0.00 1.85
831 844 4.092091 CAGAACAGAAGCCGCTTTACTTAG 59.908 45.833 7.16 0.00 0.00 2.18
859 872 2.178912 ACCACCAACCTAATCACACG 57.821 50.000 0.00 0.00 0.00 4.49
884 897 3.957591 TCTCCTGATCATGCTAGATGC 57.042 47.619 0.00 0.00 43.25 3.91
885 898 3.508426 TCTCCTGATCATGCTAGATGCT 58.492 45.455 0.00 0.00 43.37 3.79
886 899 4.670765 TCTCCTGATCATGCTAGATGCTA 58.329 43.478 0.00 0.00 43.37 3.49
887 900 4.462132 TCTCCTGATCATGCTAGATGCTAC 59.538 45.833 0.00 0.00 43.37 3.58
890 903 2.568956 TGATCATGCTAGATGCTACCCC 59.431 50.000 0.00 0.00 43.37 4.95
926 939 1.462283 CACGAATCCTGTTGTCTGCAG 59.538 52.381 7.63 7.63 0.00 4.41
977 990 4.467795 CCAGTTACCCAGAAATCTGAGAGA 59.532 45.833 11.94 0.00 46.59 3.10
1056 1069 1.758906 GGCCCTCGCTCTCCTTAGT 60.759 63.158 0.00 0.00 34.44 2.24
1060 1073 1.064946 CTCGCTCTCCTTAGTGGCG 59.935 63.158 0.00 0.00 42.56 5.69
1278 1291 1.667151 CGTTCCCCAGTTCACGGTA 59.333 57.895 0.00 0.00 0.00 4.02
1446 1507 4.507869 CCTGCAATTCCATCCATCTCCATA 60.508 45.833 0.00 0.00 0.00 2.74
1504 1565 2.281139 TGAACGTGCCGATGCCAA 60.281 55.556 0.00 0.00 36.33 4.52
1505 1566 2.175811 GAACGTGCCGATGCCAAC 59.824 61.111 0.00 0.00 36.33 3.77
1572 1633 1.262683 GCGAGAATCTACAATGCTGGC 59.737 52.381 0.00 0.00 0.00 4.85
1586 1647 1.066716 TGCTGGCTCAATGATTTTGGC 60.067 47.619 0.00 0.00 0.00 4.52
1626 1687 4.181309 TGATTTTGGCCATTTACCGTTC 57.819 40.909 6.09 0.00 0.00 3.95
1630 1691 2.401990 GCCATTTACCGTTCGCCG 59.598 61.111 0.00 0.00 0.00 6.46
1668 1729 5.292345 GTGCGGTTCCTATTTTGTTTTTGTT 59.708 36.000 0.00 0.00 0.00 2.83
1674 1735 9.900710 GGTTCCTATTTTGTTTTTGTTTTTGTT 57.099 25.926 0.00 0.00 0.00 2.83
1685 1746 9.191995 TGTTTTTGTTTTTGTTTTTGTGTTTGT 57.808 22.222 0.00 0.00 0.00 2.83
1686 1747 9.453087 GTTTTTGTTTTTGTTTTTGTGTTTGTG 57.547 25.926 0.00 0.00 0.00 3.33
1687 1748 8.742554 TTTTGTTTTTGTTTTTGTGTTTGTGT 57.257 23.077 0.00 0.00 0.00 3.72
1688 1749 8.742554 TTTGTTTTTGTTTTTGTGTTTGTGTT 57.257 23.077 0.00 0.00 0.00 3.32
1689 1750 8.742554 TTGTTTTTGTTTTTGTGTTTGTGTTT 57.257 23.077 0.00 0.00 0.00 2.83
1690 1751 8.161754 TGTTTTTGTTTTTGTGTTTGTGTTTG 57.838 26.923 0.00 0.00 0.00 2.93
1691 1752 7.807907 TGTTTTTGTTTTTGTGTTTGTGTTTGT 59.192 25.926 0.00 0.00 0.00 2.83
1692 1753 7.725610 TTTTGTTTTTGTGTTTGTGTTTGTG 57.274 28.000 0.00 0.00 0.00 3.33
1693 1754 6.422776 TTGTTTTTGTGTTTGTGTTTGTGT 57.577 29.167 0.00 0.00 0.00 3.72
1694 1755 7.534085 TTGTTTTTGTGTTTGTGTTTGTGTA 57.466 28.000 0.00 0.00 0.00 2.90
1836 1899 2.848858 GCATTAGCCCGCCATGTGG 61.849 63.158 0.00 0.00 34.43 4.17
1866 1929 4.015084 CTCCAACAAATCTGCCTTCTGAT 58.985 43.478 0.00 0.00 33.07 2.90
1867 1930 3.760151 TCCAACAAATCTGCCTTCTGATG 59.240 43.478 0.00 0.00 32.23 3.07
1887 1950 5.773176 TGATGAATATGCATTTGAGCCTGAT 59.227 36.000 3.54 0.00 0.00 2.90
1935 2425 4.233123 TGAACACAAGTAGGAGTACGTG 57.767 45.455 0.00 0.00 42.47 4.49
2150 2746 1.529948 AGAGTGGACCGAACCGACA 60.530 57.895 0.00 0.00 0.00 4.35
2153 2749 0.395312 AGTGGACCGAACCGACATTT 59.605 50.000 0.00 0.00 0.00 2.32
2183 2779 9.887629 TTTCTAATACCGATACCAAACATAACA 57.112 29.630 0.00 0.00 0.00 2.41
2258 2854 1.973812 GGGCTTCACCTTGTCTGGC 60.974 63.158 0.00 0.00 39.10 4.85
2412 3008 3.838903 CCCTTCTACTACCTGGAACAAGT 59.161 47.826 0.00 0.93 38.70 3.16
2446 3042 3.521560 TCAGGATGATACAGTTTGCGTC 58.478 45.455 0.00 0.00 42.56 5.19
2448 3044 2.094182 AGGATGATACAGTTTGCGTCGT 60.094 45.455 0.00 0.00 0.00 4.34
2466 3062 4.278058 GTCGTACCGATAGTAAAGCTGTC 58.722 47.826 0.00 0.00 38.42 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.470098 GCCATGGTGTCACAGAACATC 59.530 52.381 14.67 0.00 0.00 3.06
3 4 0.602638 TCGCCATGGTGTCACAGAAC 60.603 55.000 24.28 0.00 0.00 3.01
4 5 0.602638 GTCGCCATGGTGTCACAGAA 60.603 55.000 24.28 0.51 0.00 3.02
5 6 1.005037 GTCGCCATGGTGTCACAGA 60.005 57.895 24.28 1.29 0.00 3.41
6 7 1.004560 AGTCGCCATGGTGTCACAG 60.005 57.895 24.28 2.72 0.00 3.66
7 8 1.301637 CAGTCGCCATGGTGTCACA 60.302 57.895 24.28 2.50 0.00 3.58
8 9 2.034879 CCAGTCGCCATGGTGTCAC 61.035 63.158 24.28 16.13 32.85 3.67
9 10 2.347114 CCAGTCGCCATGGTGTCA 59.653 61.111 24.28 3.70 32.85 3.58
10 11 3.127533 GCCAGTCGCCATGGTGTC 61.128 66.667 24.28 18.99 40.17 3.67
21 22 3.567797 GATTGCTCGCCGCCAGTC 61.568 66.667 0.00 0.00 38.05 3.51
22 23 4.087892 AGATTGCTCGCCGCCAGT 62.088 61.111 0.00 0.00 38.05 4.00
23 24 3.267860 GAGATTGCTCGCCGCCAG 61.268 66.667 0.00 0.00 38.05 4.85
31 32 4.794164 TCGCTGACGAGATTGCTC 57.206 55.556 0.00 0.00 45.12 4.26
40 41 2.230940 CCGGTTGCTATCGCTGACG 61.231 63.158 0.00 0.00 42.01 4.35
41 42 0.459585 TTCCGGTTGCTATCGCTGAC 60.460 55.000 0.00 0.00 36.97 3.51
42 43 0.179111 CTTCCGGTTGCTATCGCTGA 60.179 55.000 0.00 0.00 36.97 4.26
43 44 0.179111 TCTTCCGGTTGCTATCGCTG 60.179 55.000 0.00 0.00 36.97 5.18
44 45 0.103208 CTCTTCCGGTTGCTATCGCT 59.897 55.000 0.00 0.00 36.97 4.93
45 46 0.102481 TCTCTTCCGGTTGCTATCGC 59.898 55.000 0.00 0.00 0.00 4.58
46 47 1.676529 TCTCTCTTCCGGTTGCTATCG 59.323 52.381 0.00 0.00 0.00 2.92
47 48 2.952978 TCTCTCTCTTCCGGTTGCTATC 59.047 50.000 0.00 0.00 0.00 2.08
48 49 2.955660 CTCTCTCTCTTCCGGTTGCTAT 59.044 50.000 0.00 0.00 0.00 2.97
49 50 2.026169 TCTCTCTCTCTTCCGGTTGCTA 60.026 50.000 0.00 0.00 0.00 3.49
50 51 1.181786 CTCTCTCTCTTCCGGTTGCT 58.818 55.000 0.00 0.00 0.00 3.91
51 52 1.134175 CTCTCTCTCTCTTCCGGTTGC 59.866 57.143 0.00 0.00 0.00 4.17
52 53 2.682856 CTCTCTCTCTCTCTTCCGGTTG 59.317 54.545 0.00 0.00 0.00 3.77
53 54 2.574369 TCTCTCTCTCTCTCTTCCGGTT 59.426 50.000 0.00 0.00 0.00 4.44
54 55 2.170607 CTCTCTCTCTCTCTCTTCCGGT 59.829 54.545 0.00 0.00 0.00 5.28
55 56 2.434336 TCTCTCTCTCTCTCTCTTCCGG 59.566 54.545 0.00 0.00 0.00 5.14
56 57 3.384789 TCTCTCTCTCTCTCTCTCTTCCG 59.615 52.174 0.00 0.00 0.00 4.30
57 58 4.651503 TCTCTCTCTCTCTCTCTCTCTTCC 59.348 50.000 0.00 0.00 0.00 3.46
58 59 5.596361 TCTCTCTCTCTCTCTCTCTCTCTTC 59.404 48.000 0.00 0.00 0.00 2.87
59 60 5.523588 TCTCTCTCTCTCTCTCTCTCTCTT 58.476 45.833 0.00 0.00 0.00 2.85
60 61 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
61 62 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
62 63 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
63 64 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
64 65 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
65 66 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
66 67 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
67 68 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
68 69 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
69 70 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
70 71 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
71 72 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
72 73 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
73 74 5.860941 TTCTCTCTCTCTCTCTCTCTCTC 57.139 47.826 0.00 0.00 0.00 3.20
74 75 5.960811 TCTTTCTCTCTCTCTCTCTCTCTCT 59.039 44.000 0.00 0.00 0.00 3.10
75 76 6.227298 TCTTTCTCTCTCTCTCTCTCTCTC 57.773 45.833 0.00 0.00 0.00 3.20
76 77 5.130145 CCTCTTTCTCTCTCTCTCTCTCTCT 59.870 48.000 0.00 0.00 0.00 3.10
77 78 5.363939 CCTCTTTCTCTCTCTCTCTCTCTC 58.636 50.000 0.00 0.00 0.00 3.20
78 79 4.164988 CCCTCTTTCTCTCTCTCTCTCTCT 59.835 50.000 0.00 0.00 0.00 3.10
79 80 4.455606 CCCTCTTTCTCTCTCTCTCTCTC 58.544 52.174 0.00 0.00 0.00 3.20
80 81 3.372025 GCCCTCTTTCTCTCTCTCTCTCT 60.372 52.174 0.00 0.00 0.00 3.10
81 82 2.952310 GCCCTCTTTCTCTCTCTCTCTC 59.048 54.545 0.00 0.00 0.00 3.20
82 83 2.683742 CGCCCTCTTTCTCTCTCTCTCT 60.684 54.545 0.00 0.00 0.00 3.10
83 84 1.676006 CGCCCTCTTTCTCTCTCTCTC 59.324 57.143 0.00 0.00 0.00 3.20
84 85 1.762708 CGCCCTCTTTCTCTCTCTCT 58.237 55.000 0.00 0.00 0.00 3.10
85 86 0.102300 GCGCCCTCTTTCTCTCTCTC 59.898 60.000 0.00 0.00 0.00 3.20
86 87 1.662438 CGCGCCCTCTTTCTCTCTCT 61.662 60.000 0.00 0.00 0.00 3.10
87 88 1.226831 CGCGCCCTCTTTCTCTCTC 60.227 63.158 0.00 0.00 0.00 3.20
88 89 2.716017 CCGCGCCCTCTTTCTCTCT 61.716 63.158 0.00 0.00 0.00 3.10
89 90 2.202810 CCGCGCCCTCTTTCTCTC 60.203 66.667 0.00 0.00 0.00 3.20
90 91 3.775654 CCCGCGCCCTCTTTCTCT 61.776 66.667 0.00 0.00 0.00 3.10
91 92 4.840005 CCCCGCGCCCTCTTTCTC 62.840 72.222 0.00 0.00 0.00 2.87
103 104 3.474570 ATCAGACAGAGGCCCCGC 61.475 66.667 0.00 0.00 0.00 6.13
104 105 2.503061 CATCAGACAGAGGCCCCG 59.497 66.667 0.00 0.00 0.00 5.73
109 110 2.202987 GCCCGCATCAGACAGAGG 60.203 66.667 0.00 0.00 0.00 3.69
110 111 2.202987 GGCCCGCATCAGACAGAG 60.203 66.667 0.00 0.00 0.00 3.35
111 112 3.785859 GGGCCCGCATCAGACAGA 61.786 66.667 5.69 0.00 0.00 3.41
112 113 4.100084 TGGGCCCGCATCAGACAG 62.100 66.667 19.37 0.00 0.00 3.51
113 114 4.408821 GTGGGCCCGCATCAGACA 62.409 66.667 30.93 0.00 0.00 3.41
127 128 3.336566 GTCAAAACGACCCGGTGG 58.663 61.111 0.00 0.00 38.85 4.61
134 135 0.165944 CATCGGCTGGTCAAAACGAC 59.834 55.000 0.00 0.00 44.57 4.34
135 136 0.250124 ACATCGGCTGGTCAAAACGA 60.250 50.000 0.00 0.00 38.00 3.85
136 137 0.165944 GACATCGGCTGGTCAAAACG 59.834 55.000 0.00 0.00 34.22 3.60
137 138 1.234821 TGACATCGGCTGGTCAAAAC 58.765 50.000 2.49 0.00 40.80 2.43
138 139 3.715871 TGACATCGGCTGGTCAAAA 57.284 47.368 2.49 0.00 40.80 2.44
141 142 0.948623 CGTTTGACATCGGCTGGTCA 60.949 55.000 0.93 0.93 41.93 4.02
142 143 1.635663 CCGTTTGACATCGGCTGGTC 61.636 60.000 6.65 0.00 40.28 4.02
143 144 1.671054 CCGTTTGACATCGGCTGGT 60.671 57.895 6.65 0.00 40.28 4.00
144 145 3.177600 CCGTTTGACATCGGCTGG 58.822 61.111 6.65 0.00 40.28 4.85
149 150 2.474266 CGGCACCGTTTGACATCG 59.526 61.111 0.00 0.00 28.81 3.84
169 170 2.038837 GTGGACTAACGGCTTGGCC 61.039 63.158 0.00 0.00 46.75 5.36
170 171 0.676782 ATGTGGACTAACGGCTTGGC 60.677 55.000 0.00 0.00 0.00 4.52
171 172 2.684001 TATGTGGACTAACGGCTTGG 57.316 50.000 0.00 0.00 0.00 3.61
172 173 3.370978 CACTTATGTGGACTAACGGCTTG 59.629 47.826 0.80 0.00 40.33 4.01
173 174 3.596214 CACTTATGTGGACTAACGGCTT 58.404 45.455 0.80 0.00 40.33 4.35
174 175 3.247006 CACTTATGTGGACTAACGGCT 57.753 47.619 0.80 0.00 40.33 5.52
208 209 7.266922 TCACCGCATCTTTAGTAAACTTTTT 57.733 32.000 0.00 0.00 0.00 1.94
209 210 6.870971 TCACCGCATCTTTAGTAAACTTTT 57.129 33.333 0.00 0.00 0.00 2.27
210 211 7.448748 AATCACCGCATCTTTAGTAAACTTT 57.551 32.000 0.00 0.00 0.00 2.66
211 212 7.448748 AAATCACCGCATCTTTAGTAAACTT 57.551 32.000 0.00 0.00 0.00 2.66
212 213 7.448748 AAAATCACCGCATCTTTAGTAAACT 57.551 32.000 0.00 0.00 0.00 2.66
213 214 7.806014 TGAAAAATCACCGCATCTTTAGTAAAC 59.194 33.333 0.00 0.00 0.00 2.01
214 215 7.877003 TGAAAAATCACCGCATCTTTAGTAAA 58.123 30.769 0.00 0.00 0.00 2.01
215 216 7.441890 TGAAAAATCACCGCATCTTTAGTAA 57.558 32.000 0.00 0.00 0.00 2.24
216 217 7.302524 GTTGAAAAATCACCGCATCTTTAGTA 58.697 34.615 0.00 0.00 0.00 1.82
217 218 5.957842 TGAAAAATCACCGCATCTTTAGT 57.042 34.783 0.00 0.00 0.00 2.24
218 219 5.283717 CGTTGAAAAATCACCGCATCTTTAG 59.716 40.000 0.00 0.00 0.00 1.85
219 220 5.150683 CGTTGAAAAATCACCGCATCTTTA 58.849 37.500 0.00 0.00 0.00 1.85
220 221 3.980775 CGTTGAAAAATCACCGCATCTTT 59.019 39.130 0.00 0.00 0.00 2.52
221 222 3.564511 CGTTGAAAAATCACCGCATCTT 58.435 40.909 0.00 0.00 0.00 2.40
222 223 2.095263 CCGTTGAAAAATCACCGCATCT 60.095 45.455 0.00 0.00 0.00 2.90
223 224 2.095466 TCCGTTGAAAAATCACCGCATC 60.095 45.455 0.00 0.00 0.00 3.91
224 225 1.883275 TCCGTTGAAAAATCACCGCAT 59.117 42.857 0.00 0.00 0.00 4.73
225 226 1.309950 TCCGTTGAAAAATCACCGCA 58.690 45.000 0.00 0.00 0.00 5.69
226 227 2.629639 ATCCGTTGAAAAATCACCGC 57.370 45.000 0.00 0.00 0.00 5.68
227 228 5.291293 AGTAATCCGTTGAAAAATCACCG 57.709 39.130 0.00 0.00 0.00 4.94
228 229 7.813645 AGTTAGTAATCCGTTGAAAAATCACC 58.186 34.615 0.00 0.00 0.00 4.02
229 230 9.968743 CTAGTTAGTAATCCGTTGAAAAATCAC 57.031 33.333 0.00 0.00 0.00 3.06
230 231 9.158233 CCTAGTTAGTAATCCGTTGAAAAATCA 57.842 33.333 0.00 0.00 0.00 2.57
231 232 9.159364 ACCTAGTTAGTAATCCGTTGAAAAATC 57.841 33.333 0.00 0.00 0.00 2.17
232 233 8.943002 CACCTAGTTAGTAATCCGTTGAAAAAT 58.057 33.333 0.00 0.00 0.00 1.82
233 234 8.149647 TCACCTAGTTAGTAATCCGTTGAAAAA 58.850 33.333 0.00 0.00 0.00 1.94
234 235 7.669427 TCACCTAGTTAGTAATCCGTTGAAAA 58.331 34.615 0.00 0.00 0.00 2.29
235 236 7.230849 TCACCTAGTTAGTAATCCGTTGAAA 57.769 36.000 0.00 0.00 0.00 2.69
236 237 6.839124 TCACCTAGTTAGTAATCCGTTGAA 57.161 37.500 0.00 0.00 0.00 2.69
237 238 7.414222 AATCACCTAGTTAGTAATCCGTTGA 57.586 36.000 0.00 0.00 0.00 3.18
238 239 8.488651 AAAATCACCTAGTTAGTAATCCGTTG 57.511 34.615 0.00 0.00 0.00 4.10
239 240 8.537858 AGAAAATCACCTAGTTAGTAATCCGTT 58.462 33.333 0.00 0.00 0.00 4.44
240 241 7.980099 CAGAAAATCACCTAGTTAGTAATCCGT 59.020 37.037 0.00 0.00 0.00 4.69
241 242 7.042658 GCAGAAAATCACCTAGTTAGTAATCCG 60.043 40.741 0.00 0.00 0.00 4.18
242 243 7.769044 TGCAGAAAATCACCTAGTTAGTAATCC 59.231 37.037 0.00 0.00 0.00 3.01
243 244 8.718102 TGCAGAAAATCACCTAGTTAGTAATC 57.282 34.615 0.00 0.00 0.00 1.75
244 245 9.515226 TTTGCAGAAAATCACCTAGTTAGTAAT 57.485 29.630 0.00 0.00 0.00 1.89
245 246 8.780249 GTTTGCAGAAAATCACCTAGTTAGTAA 58.220 33.333 0.00 0.00 0.00 2.24
246 247 7.389607 GGTTTGCAGAAAATCACCTAGTTAGTA 59.610 37.037 0.00 0.00 0.00 1.82
247 248 6.206829 GGTTTGCAGAAAATCACCTAGTTAGT 59.793 38.462 0.00 0.00 0.00 2.24
248 249 6.206634 TGGTTTGCAGAAAATCACCTAGTTAG 59.793 38.462 0.00 0.00 33.83 2.34
249 250 6.065374 TGGTTTGCAGAAAATCACCTAGTTA 58.935 36.000 0.00 0.00 33.83 2.24
250 251 4.892934 TGGTTTGCAGAAAATCACCTAGTT 59.107 37.500 0.00 0.00 33.83 2.24
251 252 4.469657 TGGTTTGCAGAAAATCACCTAGT 58.530 39.130 0.00 0.00 33.83 2.57
252 253 5.452078 TTGGTTTGCAGAAAATCACCTAG 57.548 39.130 0.00 0.00 38.63 3.02
253 254 4.261994 GCTTGGTTTGCAGAAAATCACCTA 60.262 41.667 0.00 0.00 38.63 3.08
254 255 3.493176 GCTTGGTTTGCAGAAAATCACCT 60.493 43.478 0.00 0.00 38.63 4.00
255 256 2.802247 GCTTGGTTTGCAGAAAATCACC 59.198 45.455 0.00 0.00 38.63 4.02
256 257 2.472488 CGCTTGGTTTGCAGAAAATCAC 59.528 45.455 0.00 0.00 38.63 3.06
257 258 2.741612 CGCTTGGTTTGCAGAAAATCA 58.258 42.857 0.00 0.00 37.09 2.57
258 259 1.456923 GCGCTTGGTTTGCAGAAAATC 59.543 47.619 0.00 0.00 0.00 2.17
259 260 1.202510 TGCGCTTGGTTTGCAGAAAAT 60.203 42.857 9.73 0.00 34.03 1.82
260 261 0.174389 TGCGCTTGGTTTGCAGAAAA 59.826 45.000 9.73 0.00 34.03 2.29
261 262 0.174389 TTGCGCTTGGTTTGCAGAAA 59.826 45.000 9.73 0.00 40.15 2.52
262 263 0.174389 TTTGCGCTTGGTTTGCAGAA 59.826 45.000 9.73 0.00 40.15 3.02
263 264 0.388659 ATTTGCGCTTGGTTTGCAGA 59.611 45.000 9.73 0.00 40.15 4.26
264 265 2.063156 TATTTGCGCTTGGTTTGCAG 57.937 45.000 9.73 0.00 40.15 4.41
265 266 2.735663 CAATATTTGCGCTTGGTTTGCA 59.264 40.909 9.73 0.00 36.72 4.08
266 267 2.736192 ACAATATTTGCGCTTGGTTTGC 59.264 40.909 9.73 0.00 0.00 3.68
267 268 5.160641 ACTACAATATTTGCGCTTGGTTTG 58.839 37.500 9.73 9.96 0.00 2.93
268 269 5.385509 ACTACAATATTTGCGCTTGGTTT 57.614 34.783 9.73 0.00 0.00 3.27
269 270 5.160641 CAACTACAATATTTGCGCTTGGTT 58.839 37.500 9.73 2.28 0.00 3.67
270 271 4.217550 ACAACTACAATATTTGCGCTTGGT 59.782 37.500 9.73 0.00 0.00 3.67
271 272 4.732784 ACAACTACAATATTTGCGCTTGG 58.267 39.130 9.73 0.00 0.00 3.61
272 273 5.509272 CAGACAACTACAATATTTGCGCTTG 59.491 40.000 9.73 6.89 0.00 4.01
273 274 5.631026 CAGACAACTACAATATTTGCGCTT 58.369 37.500 9.73 0.00 0.00 4.68
274 275 4.437390 GCAGACAACTACAATATTTGCGCT 60.437 41.667 9.73 0.00 0.00 5.92
275 276 3.786048 GCAGACAACTACAATATTTGCGC 59.214 43.478 0.00 0.00 0.00 6.09
276 277 5.221891 AGCAGACAACTACAATATTTGCG 57.778 39.130 0.00 0.00 34.45 4.85
277 278 7.873739 AAAAGCAGACAACTACAATATTTGC 57.126 32.000 0.00 0.00 0.00 3.68
281 282 8.730680 CCAGTTAAAAGCAGACAACTACAATAT 58.269 33.333 0.00 0.00 30.31 1.28
282 283 7.717875 ACCAGTTAAAAGCAGACAACTACAATA 59.282 33.333 0.00 0.00 30.31 1.90
283 284 6.546034 ACCAGTTAAAAGCAGACAACTACAAT 59.454 34.615 0.00 0.00 30.31 2.71
284 285 5.883673 ACCAGTTAAAAGCAGACAACTACAA 59.116 36.000 0.00 0.00 30.31 2.41
285 286 5.433526 ACCAGTTAAAAGCAGACAACTACA 58.566 37.500 0.00 0.00 30.31 2.74
286 287 6.037830 TGAACCAGTTAAAAGCAGACAACTAC 59.962 38.462 0.00 0.00 30.31 2.73
287 288 6.116806 TGAACCAGTTAAAAGCAGACAACTA 58.883 36.000 0.00 0.00 30.31 2.24
288 289 4.947388 TGAACCAGTTAAAAGCAGACAACT 59.053 37.500 0.00 0.00 0.00 3.16
289 290 5.243426 TGAACCAGTTAAAAGCAGACAAC 57.757 39.130 0.00 0.00 0.00 3.32
290 291 5.163561 CCTTGAACCAGTTAAAAGCAGACAA 60.164 40.000 0.00 0.00 0.00 3.18
291 292 4.338118 CCTTGAACCAGTTAAAAGCAGACA 59.662 41.667 0.00 0.00 0.00 3.41
292 293 4.793028 GCCTTGAACCAGTTAAAAGCAGAC 60.793 45.833 0.00 0.00 0.00 3.51
293 294 3.317993 GCCTTGAACCAGTTAAAAGCAGA 59.682 43.478 0.00 0.00 0.00 4.26
294 295 3.068024 TGCCTTGAACCAGTTAAAAGCAG 59.932 43.478 0.56 0.00 0.00 4.24
295 296 3.027412 TGCCTTGAACCAGTTAAAAGCA 58.973 40.909 0.56 0.56 0.00 3.91
296 297 3.726291 TGCCTTGAACCAGTTAAAAGC 57.274 42.857 0.00 0.00 0.00 3.51
297 298 5.841810 TCATTGCCTTGAACCAGTTAAAAG 58.158 37.500 0.00 0.00 0.00 2.27
298 299 5.860941 TCATTGCCTTGAACCAGTTAAAA 57.139 34.783 0.00 0.00 0.00 1.52
299 300 5.860941 TTCATTGCCTTGAACCAGTTAAA 57.139 34.783 0.00 0.00 30.82 1.52
300 301 5.738783 GCTTTCATTGCCTTGAACCAGTTAA 60.739 40.000 0.00 0.00 35.42 2.01
301 302 4.261994 GCTTTCATTGCCTTGAACCAGTTA 60.262 41.667 0.00 0.00 35.42 2.24
302 303 3.493176 GCTTTCATTGCCTTGAACCAGTT 60.493 43.478 0.00 0.00 35.42 3.16
303 304 2.036346 GCTTTCATTGCCTTGAACCAGT 59.964 45.455 0.00 0.00 35.42 4.00
304 305 2.680577 GCTTTCATTGCCTTGAACCAG 58.319 47.619 0.00 0.00 35.42 4.00
305 306 1.000385 CGCTTTCATTGCCTTGAACCA 60.000 47.619 0.00 0.00 35.42 3.67
306 307 1.000274 ACGCTTTCATTGCCTTGAACC 60.000 47.619 0.00 0.00 35.42 3.62
307 308 2.287547 TGACGCTTTCATTGCCTTGAAC 60.288 45.455 0.00 0.00 35.42 3.18
308 309 1.952990 TGACGCTTTCATTGCCTTGAA 59.047 42.857 0.00 0.00 33.89 2.69
309 310 1.536766 CTGACGCTTTCATTGCCTTGA 59.463 47.619 0.00 0.00 32.17 3.02
310 311 1.973138 CTGACGCTTTCATTGCCTTG 58.027 50.000 0.00 0.00 32.17 3.61
311 312 0.242017 GCTGACGCTTTCATTGCCTT 59.758 50.000 0.00 0.00 32.17 4.35
312 313 0.607489 AGCTGACGCTTTCATTGCCT 60.607 50.000 0.00 0.00 46.47 4.75
313 314 1.878775 AGCTGACGCTTTCATTGCC 59.121 52.632 0.00 0.00 46.47 4.52
323 324 3.452474 AGTCTTATCAATGAGCTGACGC 58.548 45.455 0.00 0.00 0.00 5.19
324 325 5.826586 ACTAGTCTTATCAATGAGCTGACG 58.173 41.667 0.00 0.00 0.00 4.35
325 326 6.695278 GTGACTAGTCTTATCAATGAGCTGAC 59.305 42.308 23.01 4.03 0.00 3.51
326 327 6.378280 TGTGACTAGTCTTATCAATGAGCTGA 59.622 38.462 23.01 0.00 0.00 4.26
327 328 6.567959 TGTGACTAGTCTTATCAATGAGCTG 58.432 40.000 23.01 0.00 0.00 4.24
328 329 6.379703 ACTGTGACTAGTCTTATCAATGAGCT 59.620 38.462 23.01 0.00 0.00 4.09
329 330 6.568869 ACTGTGACTAGTCTTATCAATGAGC 58.431 40.000 23.01 0.00 0.00 4.26
330 331 8.349245 CCTACTGTGACTAGTCTTATCAATGAG 58.651 40.741 23.01 12.34 32.19 2.90
331 332 8.053355 TCCTACTGTGACTAGTCTTATCAATGA 58.947 37.037 23.01 8.74 32.19 2.57
332 333 8.226819 TCCTACTGTGACTAGTCTTATCAATG 57.773 38.462 23.01 6.71 32.19 2.82
333 334 8.824756 TTCCTACTGTGACTAGTCTTATCAAT 57.175 34.615 23.01 9.89 32.19 2.57
334 335 7.889073 ACTTCCTACTGTGACTAGTCTTATCAA 59.111 37.037 23.01 0.00 32.19 2.57
335 336 7.403671 ACTTCCTACTGTGACTAGTCTTATCA 58.596 38.462 23.01 14.81 32.19 2.15
336 337 7.868906 ACTTCCTACTGTGACTAGTCTTATC 57.131 40.000 23.01 11.47 32.19 1.75
337 338 7.499895 GCTACTTCCTACTGTGACTAGTCTTAT 59.500 40.741 23.01 9.14 32.19 1.73
338 339 6.822676 GCTACTTCCTACTGTGACTAGTCTTA 59.177 42.308 23.01 11.22 32.19 2.10
339 340 5.648960 GCTACTTCCTACTGTGACTAGTCTT 59.351 44.000 23.01 8.03 32.19 3.01
340 341 5.045432 AGCTACTTCCTACTGTGACTAGTCT 60.045 44.000 23.01 6.04 32.19 3.24
341 342 5.187687 AGCTACTTCCTACTGTGACTAGTC 58.812 45.833 16.32 16.32 32.19 2.59
342 343 5.182169 AGCTACTTCCTACTGTGACTAGT 57.818 43.478 0.00 0.00 34.71 2.57
343 344 7.049133 TCTAAGCTACTTCCTACTGTGACTAG 58.951 42.308 0.00 0.00 0.00 2.57
344 345 6.955364 TCTAAGCTACTTCCTACTGTGACTA 58.045 40.000 0.00 0.00 0.00 2.59
345 346 5.817784 TCTAAGCTACTTCCTACTGTGACT 58.182 41.667 0.00 0.00 0.00 3.41
346 347 5.648960 ACTCTAAGCTACTTCCTACTGTGAC 59.351 44.000 0.00 0.00 0.00 3.67
347 348 5.817784 ACTCTAAGCTACTTCCTACTGTGA 58.182 41.667 0.00 0.00 0.00 3.58
348 349 6.824704 ACTACTCTAAGCTACTTCCTACTGTG 59.175 42.308 0.00 0.00 0.00 3.66
349 350 6.961042 ACTACTCTAAGCTACTTCCTACTGT 58.039 40.000 0.00 0.00 0.00 3.55
350 351 8.829612 GTTACTACTCTAAGCTACTTCCTACTG 58.170 40.741 0.00 0.00 0.00 2.74
351 352 8.547173 TGTTACTACTCTAAGCTACTTCCTACT 58.453 37.037 0.00 0.00 0.00 2.57
352 353 8.729805 TGTTACTACTCTAAGCTACTTCCTAC 57.270 38.462 0.00 0.00 0.00 3.18
353 354 9.339850 CATGTTACTACTCTAAGCTACTTCCTA 57.660 37.037 0.00 0.00 0.00 2.94
354 355 7.835181 ACATGTTACTACTCTAAGCTACTTCCT 59.165 37.037 0.00 0.00 0.00 3.36
355 356 7.998580 ACATGTTACTACTCTAAGCTACTTCC 58.001 38.462 0.00 0.00 0.00 3.46
388 389 9.869667 ATTGTGGAGATAGTAACATAGACTAGT 57.130 33.333 0.00 0.00 33.03 2.57
390 391 9.078990 CCATTGTGGAGATAGTAACATAGACTA 57.921 37.037 0.00 0.00 40.96 2.59
391 392 7.015682 CCCATTGTGGAGATAGTAACATAGACT 59.984 40.741 0.00 0.00 40.96 3.24
392 393 7.155328 CCCATTGTGGAGATAGTAACATAGAC 58.845 42.308 0.00 0.00 40.96 2.59
393 394 6.844388 ACCCATTGTGGAGATAGTAACATAGA 59.156 38.462 0.00 0.00 40.96 1.98
394 395 7.067496 ACCCATTGTGGAGATAGTAACATAG 57.933 40.000 0.00 0.00 40.96 2.23
395 396 7.787904 ACTACCCATTGTGGAGATAGTAACATA 59.212 37.037 0.00 0.00 40.96 2.29
396 397 5.975988 ACCCATTGTGGAGATAGTAACAT 57.024 39.130 0.00 0.00 40.96 2.71
397 398 5.962031 ACTACCCATTGTGGAGATAGTAACA 59.038 40.000 0.00 0.00 40.96 2.41
398 399 6.481434 ACTACCCATTGTGGAGATAGTAAC 57.519 41.667 0.00 0.00 40.96 2.50
399 400 7.201848 CGTTACTACCCATTGTGGAGATAGTAA 60.202 40.741 15.69 15.69 40.96 2.24
400 401 6.263842 CGTTACTACCCATTGTGGAGATAGTA 59.736 42.308 0.00 4.60 40.96 1.82
401 402 5.068723 CGTTACTACCCATTGTGGAGATAGT 59.931 44.000 0.00 5.44 40.96 2.12
402 403 5.068723 ACGTTACTACCCATTGTGGAGATAG 59.931 44.000 0.00 0.00 40.96 2.08
403 404 4.957954 ACGTTACTACCCATTGTGGAGATA 59.042 41.667 0.00 0.00 40.96 1.98
404 405 3.773119 ACGTTACTACCCATTGTGGAGAT 59.227 43.478 0.00 0.00 40.96 2.75
405 406 3.167485 ACGTTACTACCCATTGTGGAGA 58.833 45.455 0.00 0.00 40.96 3.71
406 407 3.604875 ACGTTACTACCCATTGTGGAG 57.395 47.619 0.00 0.00 40.96 3.86
407 408 4.467082 ACATACGTTACTACCCATTGTGGA 59.533 41.667 0.00 0.00 40.96 4.02
408 409 4.569162 CACATACGTTACTACCCATTGTGG 59.431 45.833 0.00 0.00 37.25 4.17
409 410 5.172934 ACACATACGTTACTACCCATTGTG 58.827 41.667 0.00 0.00 0.00 3.33
410 411 5.410355 ACACATACGTTACTACCCATTGT 57.590 39.130 0.00 0.00 0.00 2.71
411 412 5.640357 ACAACACATACGTTACTACCCATTG 59.360 40.000 0.00 0.00 0.00 2.82
412 413 5.640357 CACAACACATACGTTACTACCCATT 59.360 40.000 0.00 0.00 0.00 3.16
413 414 5.172934 CACAACACATACGTTACTACCCAT 58.827 41.667 0.00 0.00 0.00 4.00
414 415 4.039004 ACACAACACATACGTTACTACCCA 59.961 41.667 0.00 0.00 0.00 4.51
415 416 4.559153 ACACAACACATACGTTACTACCC 58.441 43.478 0.00 0.00 0.00 3.69
416 417 5.221880 TGACACAACACATACGTTACTACC 58.778 41.667 0.00 0.00 0.00 3.18
417 418 6.669032 GCATGACACAACACATACGTTACTAC 60.669 42.308 0.00 0.00 0.00 2.73
418 419 5.346551 GCATGACACAACACATACGTTACTA 59.653 40.000 0.00 0.00 0.00 1.82
419 420 4.151689 GCATGACACAACACATACGTTACT 59.848 41.667 0.00 0.00 0.00 2.24
420 421 4.084276 TGCATGACACAACACATACGTTAC 60.084 41.667 0.00 0.00 0.00 2.50
421 422 4.058817 TGCATGACACAACACATACGTTA 58.941 39.130 0.00 0.00 0.00 3.18
422 423 2.875317 TGCATGACACAACACATACGTT 59.125 40.909 0.00 0.00 0.00 3.99
423 424 2.488952 TGCATGACACAACACATACGT 58.511 42.857 0.00 0.00 0.00 3.57
424 425 3.124976 TGATGCATGACACAACACATACG 59.875 43.478 2.46 0.00 0.00 3.06
425 426 4.154737 AGTGATGCATGACACAACACATAC 59.845 41.667 18.76 0.00 39.18 2.39
426 427 4.325972 AGTGATGCATGACACAACACATA 58.674 39.130 18.76 0.00 39.18 2.29
427 428 3.151554 AGTGATGCATGACACAACACAT 58.848 40.909 18.76 0.00 39.18 3.21
428 429 2.574450 AGTGATGCATGACACAACACA 58.426 42.857 18.76 0.00 39.18 3.72
429 430 3.003585 TGAAGTGATGCATGACACAACAC 59.996 43.478 18.76 11.21 39.18 3.32
430 431 3.212685 TGAAGTGATGCATGACACAACA 58.787 40.909 18.76 13.99 39.18 3.33
431 432 3.902261 TGAAGTGATGCATGACACAAC 57.098 42.857 18.76 11.93 39.18 3.32
432 433 5.456548 AAATGAAGTGATGCATGACACAA 57.543 34.783 18.76 3.33 39.18 3.33
433 434 6.762702 ATAAATGAAGTGATGCATGACACA 57.237 33.333 18.76 16.77 39.18 3.72
513 514 9.464714 CACACTGATAGTAACATAGATGGTAAC 57.535 37.037 0.00 0.00 30.66 2.50
514 515 8.638873 CCACACTGATAGTAACATAGATGGTAA 58.361 37.037 0.00 0.00 30.66 2.85
515 516 7.232737 CCCACACTGATAGTAACATAGATGGTA 59.767 40.741 0.00 0.00 0.00 3.25
516 517 6.042093 CCCACACTGATAGTAACATAGATGGT 59.958 42.308 0.00 0.00 0.00 3.55
517 518 6.042093 ACCCACACTGATAGTAACATAGATGG 59.958 42.308 0.00 0.00 0.00 3.51
518 519 7.055667 ACCCACACTGATAGTAACATAGATG 57.944 40.000 0.00 0.00 0.00 2.90
519 520 8.005388 ACTACCCACACTGATAGTAACATAGAT 58.995 37.037 0.00 0.00 0.00 1.98
520 521 7.351952 ACTACCCACACTGATAGTAACATAGA 58.648 38.462 0.00 0.00 0.00 1.98
521 522 7.502895 AGACTACCCACACTGATAGTAACATAG 59.497 40.741 0.00 0.00 0.00 2.23
522 523 7.351952 AGACTACCCACACTGATAGTAACATA 58.648 38.462 0.00 0.00 0.00 2.29
523 524 6.195700 AGACTACCCACACTGATAGTAACAT 58.804 40.000 0.00 0.00 0.00 2.71
524 525 5.577100 AGACTACCCACACTGATAGTAACA 58.423 41.667 0.00 0.00 0.00 2.41
525 526 7.555554 TCTTAGACTACCCACACTGATAGTAAC 59.444 40.741 0.00 0.00 0.00 2.50
526 527 7.636579 TCTTAGACTACCCACACTGATAGTAA 58.363 38.462 0.00 0.00 0.00 2.24
527 528 7.204243 TCTTAGACTACCCACACTGATAGTA 57.796 40.000 0.00 0.00 0.00 1.82
528 529 6.075949 TCTTAGACTACCCACACTGATAGT 57.924 41.667 0.00 0.00 0.00 2.12
529 530 7.406031 TTTCTTAGACTACCCACACTGATAG 57.594 40.000 0.00 0.00 0.00 2.08
530 531 7.786046 TTTTCTTAGACTACCCACACTGATA 57.214 36.000 0.00 0.00 0.00 2.15
531 532 6.681729 TTTTCTTAGACTACCCACACTGAT 57.318 37.500 0.00 0.00 0.00 2.90
532 533 6.488769 TTTTTCTTAGACTACCCACACTGA 57.511 37.500 0.00 0.00 0.00 3.41
533 534 9.449719 AATATTTTTCTTAGACTACCCACACTG 57.550 33.333 0.00 0.00 0.00 3.66
534 535 9.668497 GAATATTTTTCTTAGACTACCCACACT 57.332 33.333 0.00 0.00 0.00 3.55
535 536 9.668497 AGAATATTTTTCTTAGACTACCCACAC 57.332 33.333 0.00 0.00 0.00 3.82
558 559 9.502091 CCAGTATATGATCGGGATTAAAAAGAA 57.498 33.333 0.00 0.00 0.00 2.52
592 593 2.549926 CAAACTTGCAAAACACCTCCC 58.450 47.619 0.00 0.00 0.00 4.30
756 761 1.140852 TGAGGAGGTGGTGTTGACTTG 59.859 52.381 0.00 0.00 0.00 3.16
757 762 1.507140 TGAGGAGGTGGTGTTGACTT 58.493 50.000 0.00 0.00 0.00 3.01
758 763 1.625818 GATGAGGAGGTGGTGTTGACT 59.374 52.381 0.00 0.00 0.00 3.41
759 764 1.347707 TGATGAGGAGGTGGTGTTGAC 59.652 52.381 0.00 0.00 0.00 3.18
760 765 1.728323 TGATGAGGAGGTGGTGTTGA 58.272 50.000 0.00 0.00 0.00 3.18
764 769 2.430465 CACTTTGATGAGGAGGTGGTG 58.570 52.381 0.00 0.00 0.00 4.17
819 832 1.066430 TGGCCAGACTAAGTAAAGCGG 60.066 52.381 0.00 0.00 0.00 5.52
911 924 1.531423 CTTGCTGCAGACAACAGGAT 58.469 50.000 20.43 0.00 35.28 3.24
912 925 1.168407 GCTTGCTGCAGACAACAGGA 61.168 55.000 20.43 0.00 42.31 3.86
926 939 0.670162 TTGGTTCTCAGCTTGCTTGC 59.330 50.000 0.00 0.00 0.00 4.01
977 990 1.529244 GGAAGCTGTGGGCAGTGTT 60.529 57.895 0.00 0.00 44.32 3.32
1207 1220 2.665185 GACCTGCGGTGTGGTGAC 60.665 66.667 4.94 0.00 35.25 3.67
1258 1271 3.047877 CGTGAACTGGGGAACGGC 61.048 66.667 0.00 0.00 32.55 5.68
1260 1273 0.668401 GTACCGTGAACTGGGGAACG 60.668 60.000 0.00 0.00 35.85 3.95
1263 1276 1.914764 GGGTACCGTGAACTGGGGA 60.915 63.158 5.65 0.00 40.86 4.81
1505 1566 4.351054 AAGGAGGTGGCGCAAGGG 62.351 66.667 10.83 0.00 38.28 3.95
1555 1616 3.920231 TGAGCCAGCATTGTAGATTCT 57.080 42.857 0.00 0.00 0.00 2.40
1572 1633 7.894376 AGTAAACATTGCCAAAATCATTGAG 57.106 32.000 0.00 0.00 0.00 3.02
1626 1687 0.239879 ACAATGTAAACAAGCCGGCG 59.760 50.000 23.20 10.77 0.00 6.46
1630 1691 1.000717 ACCGCACAATGTAAACAAGCC 60.001 47.619 0.00 0.00 0.00 4.35
1668 1729 7.305474 ACACAAACACAAACACAAAAACAAAA 58.695 26.923 0.00 0.00 0.00 2.44
1674 1735 7.649973 ACTACTACACAAACACAAACACAAAA 58.350 30.769 0.00 0.00 0.00 2.44
1676 1737 6.804770 ACTACTACACAAACACAAACACAA 57.195 33.333 0.00 0.00 0.00 3.33
1677 1738 7.098477 AGTACTACTACACAAACACAAACACA 58.902 34.615 0.00 0.00 0.00 3.72
1678 1739 7.529880 AGTACTACTACACAAACACAAACAC 57.470 36.000 0.00 0.00 0.00 3.32
1679 1740 9.820725 AATAGTACTACTACACAAACACAAACA 57.179 29.630 4.31 0.00 32.84 2.83
1681 1742 9.263538 CCAATAGTACTACTACACAAACACAAA 57.736 33.333 4.31 0.00 32.84 2.83
1682 1743 7.874016 CCCAATAGTACTACTACACAAACACAA 59.126 37.037 4.31 0.00 32.84 3.33
1683 1744 7.380536 CCCAATAGTACTACTACACAAACACA 58.619 38.462 4.31 0.00 32.84 3.72
1684 1745 6.312180 GCCCAATAGTACTACTACACAAACAC 59.688 42.308 4.31 0.00 32.84 3.32
1685 1746 6.211986 AGCCCAATAGTACTACTACACAAACA 59.788 38.462 4.31 0.00 32.84 2.83
1686 1747 6.637657 AGCCCAATAGTACTACTACACAAAC 58.362 40.000 4.31 0.00 32.84 2.93
1687 1748 6.862469 AGCCCAATAGTACTACTACACAAA 57.138 37.500 4.31 0.00 32.84 2.83
1688 1749 6.211986 ACAAGCCCAATAGTACTACTACACAA 59.788 38.462 4.31 0.00 32.84 3.33
1689 1750 5.718130 ACAAGCCCAATAGTACTACTACACA 59.282 40.000 4.31 0.00 32.84 3.72
1690 1751 6.127535 TGACAAGCCCAATAGTACTACTACAC 60.128 42.308 4.31 0.00 32.84 2.90
1691 1752 5.953548 TGACAAGCCCAATAGTACTACTACA 59.046 40.000 4.31 0.00 32.84 2.74
1692 1753 6.461110 TGACAAGCCCAATAGTACTACTAC 57.539 41.667 4.31 0.00 32.84 2.73
1693 1754 7.418597 CCATTGACAAGCCCAATAGTACTACTA 60.419 40.741 4.31 0.00 34.82 1.82
1694 1755 6.349300 CATTGACAAGCCCAATAGTACTACT 58.651 40.000 4.31 0.00 33.35 2.57
1759 1822 9.720667 ATGTGATAAAAATGACATACATGTTCG 57.279 29.630 2.30 0.00 41.95 3.95
1836 1899 3.440522 GCAGATTTGTTGGAGTTAGACCC 59.559 47.826 0.00 0.00 0.00 4.46
1866 1929 5.134661 TCATCAGGCTCAAATGCATATTCA 58.865 37.500 0.00 0.00 34.04 2.57
1867 1930 5.700722 TCATCAGGCTCAAATGCATATTC 57.299 39.130 0.00 0.00 34.04 1.75
1887 1950 5.918426 TTCAAGGCTCAAATGCATATTCA 57.082 34.783 0.00 0.00 34.04 2.57
1935 2425 4.319177 AGATGTTCCAAGTCTAGTTGTGC 58.681 43.478 0.00 0.00 0.00 4.57
1989 2585 2.363788 TCGCTGTAATGCTCTTCGTT 57.636 45.000 0.00 0.00 0.00 3.85
1990 2586 2.363788 TTCGCTGTAATGCTCTTCGT 57.636 45.000 0.00 0.00 0.00 3.85
2105 2701 0.108329 ACCCGCATTTCTTCGTCGAT 60.108 50.000 0.00 0.00 0.00 3.59
2153 2749 9.621629 ATGTTTGGTATCGGTATTAGAAATGAA 57.378 29.630 0.00 0.00 0.00 2.57
2183 2779 4.228824 TCTACCAACAGTTAGTTCCTGGT 58.771 43.478 0.00 0.00 40.87 4.00
2258 2854 1.114722 TGGGCAGAAGTTTGCTTGGG 61.115 55.000 9.05 0.00 43.57 4.12
2305 2901 1.107945 TCCTGCCGTCGTCAATGATA 58.892 50.000 0.00 0.00 0.00 2.15
2412 3008 9.716531 CTGTATCATCCTGAATAAATGCTCTTA 57.283 33.333 0.00 0.00 0.00 2.10
2448 3044 8.295288 GCTTATTAGACAGCTTTACTATCGGTA 58.705 37.037 0.00 0.00 32.87 4.02
2466 3062 8.147058 ACTTAGACATCAGGACATGCTTATTAG 58.853 37.037 0.00 0.00 0.00 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.