>input_sequence_77156
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----------------------------------------------------ATGGCTGTCAGCACTGGTAGCTTCTTGG
CCATTGCCATGGCCCTCGCTCTCCTTAGTGGCGACATGGCCCACGCCGGCCGCCTCCTGGCCGACACCACGGAGGCAGCA
GCGCCCGCTGCAACGCCTGCCGCTGTCCCAGGCATCCCCGCGCCGAAGCCGCCCGTGCCCACCATGCCTACAATGCCACC
AGTGCCAACCGTGCCCGCGGTCACCACACCGCAGGTCACAGTGCCCCCGATGCCAGCCGTGCCCGCGCTCGCCGTTCCCC
AGTTCACGGTACCCCCCATGACGGCCGTGCCCGCGATCACCGTGTCCC--------------------------------
----------------AGGTCACGTTGCCGCCCATGCCGGCCGTCCCTGCGGTCACCGTGCCCAAGGTCACGTTGCCGCC
CATGCCCGCAGTTGTTGTGCCGAAGGTGACGATGCCGCCAATGCCTGCAATTCCATCCATCTCCATACCCAAGGTGGCAT
TGCCTCCGATGCCTTCCATTCCCACTGTGAACGTGCCGATGCCAACCCTTGCGCCACCTCCTTCAGCATAG---------
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>chr2A_1_TraesCS2A01G379300
GATGTTCTGTGACACCATGGCGACTGGCGGCGAGCAATCTCGTCAGCGATAGCAACCGGAAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAAAGAGGGCGCGGGGCCTCTGTCTGATGCGGGCCCACCGGGTCGTTTTGACCAGCCGATGTCAAAC
GGTGCCGTCGGCCAAGCCGTTAGTCCACATAAGTGTTTTATGCAAAAAAAAAAGTTTACTAAAGATGCGGTGATTTTTCA
ACGGATTACTAACTAGGTGATTTTCTGCAAACCAAGCGCAAATATTGTAGTTGTCTGCTTTTAACTGGTTCAAGGCAATG
AAAGCGTCAGCTCATTGATAAGACTAGTCACAGTAGGAAGTAGCTTAGAGTAGTAACATGTATATGTTACTAGTCTATGT
TACTATCTCCACAATGGGTAGTAACGTATGTGTTGTGTCATGCATCACTTCATTTATTATATTATAGACTCATTTTTTTC
CTTGATATGTGTGATATTACAGTAACTAGCTATGTTACCATCTATGTTACTATCAGTGTGGGTAGTCTAAGAAAAATATT
CTTTTTAATCCCGATCATATACTGGAAGCTGTGGGAGGTGTTTTGCAAGTTTGCATCTCAAA----TACTTGACCAAATA
CCTGAAAAGCTCAGTTTAGGCCAATCGTTGGCAAACCAATCTGATGCGCAGGCATTACTTTCGAACCAGTAGGGAGTTGA
ACTAACTGACGACATTGAGTCACAGTGCGTGTCACTACGTCAAGTCAACACCACCTCCTCATCAAAGTGGCCTGACCATC
A--------CCAACTCCAAACAGAACAGAAGCCGCTTTACTTAGTCTGGCCAACCACCAACCTAATCACACGCCGATCTC
CTGATCATGCTAGATGCTACCCCGCATAAATATGCATGCACGAATCCTGTTGTCTGCAGCAAGCAAGCTGAGAACCAATC
CTGCACCCAGTTACCCAGAAATCTGAGAGAACACTGCCCACAGCTTCCTGAAATGGCTGTCAGCACTGGTAGCTTCTTGG
CCATTGCCATGGCCCTCGCTCTCCTTAGTGGCGACATGGCCCACGCCGGCCGCCTCCTGGCCGACACCACGGAGGCAGCA
GCGCCCGCTGCAACGCCTGCCGCTGTCCCAGGCATCCCCGCGCCGAAGCCGCCCGTGCCCACCATGCCTACAATGCCACC
AGTGCCAACCGTGCCCGCGGTCACCACACCGCAGGTCACAGTGCCCCCGATGCCAGCCGTGCCCGCGCTCGCCGTTCCCC
AGTTCACGGTACCCCCCATGACGGCCGTGCCCGCGATCACCGTGTCCC--------------------------------
----------------AGGTCACGTTGCCGCCCATGCCGGCCGTCCCTGCGGTCACCGTGCCCAAGGTCACGTTGCCGCC
CATGCCCGCAGTTGTTGTGCCGAAGGTGACGATGCCGCCAATGCCTGCAATTCCATCCATCTCCATACCCAAGGTGGCAT
TGCCTCCGATGCCTTCCATTCCCACTGTGAACGTGCCGATGCCAACCCTTGCGCCACCTCCTTCAGCATAGGCACGAACC
AGAGCACCGGGAGCGAGAATCTACAATGCTGGCTCAATGATTTTGGCAATGTTTACTTGATCATTTGATTTTGGCCATTT
ACCGTTCGCCGGCTTGTTTACATTGTGCGGTTCCTATTTTGTTTTTGTTTTTGTTTTTGTGTTTGTGTTTGTGTAGTAGT
AC--TATTGGGCTTGTCAATGGCCATCTCTTTTTCTTTCTCTTTGTACTGAGTTTTTACAACGAACATGTATGTCATTTT
TATCACATTTATGTCAGACATACTGTTATGTACTTATTGAGCATTAGCCCGCCATGTGGGGTCTAACTCCAACAAATCTG
CCTTCTGATGAATATGCATTTGAGCCTGAT--------------------------------------------------
-------------------G------------------------------------------------------------
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-----------------------------------------------------------------------------AAT
ATGCATTTGAGCCTTGAAAAGTTGAACACAAGTAGGAGTAC---------------------------------------
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----------------------GTGCACAACTAGACTTGGAACATCTTTGACA---------------------------
-------------------------------------------------------------------------------T
ACATTTATACATTCAAATCGTCCAAACGAAGAGCATTACAGCGAATGCACGCTTCCATCTTCATTTTGAGTGGAACGCCC
AGAAAGATACATTTCTGCGGTGGCAGTATGCAATGCAGCTCCAATTGGAAGGACATCCTCATCGACGAAGAAATGCGGGT
TGTGAGCAGAGTGGACCGAACCGACATTTTCATTTCTAATACCGATACCAAACATAACACCAGGAACTAACTGTTGGTAG
AATGCAAAGTCTTCCCCTGCCATGATCTTCTCTCCGGGCTTCACCTTGTCTGGCCCAAGCAAACTTCTGCCCACATTCTC
TACATGCTGGTGCAGTCTCTTATCATTGACGACGGCAGGATACATTGGGTGGGAGGGAGCCCCCAATATCTCCGTAACTC
CCGTGCACCTATGTACAGCTGCCTGCCCTTCTACTACCTGGAACAAGTAAGAGCATTTATTCAGGATGATACAGTTTGCG
TCGTACCGATAGTAAAGCTGTCTAATAAGCATGTCCTGATGTCTAAGTCCGACTCTTCAGAGAATGCACACAAGGTGCTC
CTAGTG
>chr2D_548
TAT-----------------------------------------------------------------------------
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----------------------------------------------------------------------GAAAAATACT
CTTTTTAATCCCGATCATATACTGGAAGCTGTTGGAGGTGCCTTGCAAGTTTGCATCTCAAA----TACTTGACCAAATA
CCTGAAAAGCTCAGTTTAGGCCAATCGTTGGCAAACCAATCTGATGCGCAGGCATTACTTTCGAACCAGTAGGGAGTTGA
ACTAACTGACGACATTGAGTCACAGTGCGTATCACTACGC-----CAATACCACCTCCTCATCAAACTGGCCTGACCATC
AGTCCATCACCAATTCCAAACAGAACTGAAGTCGCTTTGCTTAATCTGGCCAACCACCAACCTAATCACACCCTGTTCCC
ATGATCATGCCAT-------CCTGCATAAATATGGGTGAACCATCCCGGTTGTCTGCACCAAGCAAGCTGAGAACCAATC
CTGCAGCCAGTTACCCAGAAATCTGAGAGCACACTGCCCACAGCTTCCTGAAATGGCTGTCAGCACTGGTAGCTTCTTGG
CCATTGCCATGGCCCTCGCTCTCCTTAGCGCCCACATGACCCACGCCGGCCGCCTCCTGGCCGACACCACGGAGGCAGCA
GCGCCCACTGCAACGCCTGCCGCTGTTCCAGGCATCCCCGCACTGAAGCCGCCCGTGCCCACCATGCCTACAATGCCACC
AGTGCCAACCGTGCCCGCGCTCACCACACCGCAGGTCGCAGTGCCGCCGATGCCGGCCGTGCCGGCGATCACTCTCCCGC
AGCTAACGGTGCCCCCCATGCCGGCCGTGCCTGCGATCACCGTGCCTCAGGTCACTTTGCCGCCCATGCCGGCCGTCCCC
GCGGTCACCGTGCCCAAGGTCACGTTGCCGCCCATGCCGGCCGTCCCCGCGGTCACCGTTCCCAAGGTCACGTTGCCGCC
CATGCCCGCCGTTGTTGTGCCGAAGGTGACGATGCCGCCAATGCCTGCAATTCCATCCATCTCCATCCCCAAGGTGGTAT
TGCCTCCGATGCCTGCATTTCCCACTGTGAACGTGCCGATGCCATTCCTTGCGCCACCTCCTTTGGCATAGGCACGAACC
AGAGCACCAGGAGCGGGAATCTACATTTCC------------------ATGTTTACTAGACCATTTGGTTTTGGCCATTC
ACCGTTAGCCACCTTGTTTACATTATGTGGTTCCTATTTTCTTTGTGTGTGTGTGTAGTAT--------------GTAGT
ACAGTATTAGGCTTGTCAATGGCCATCCCTTTTTCTTTCTCTTTGTATTGAGTTTTTACAGTGAACATATATGTCATTTT
-ATCACATTTATGTCAGACATACTGTTATGCAATTACTGAGCAATAATTCGTCATGTGCATTCTAACTCCAACAAATCTG
CTTTCTGACAAGTACTCCCTCCGTTCGGAATTACTTGTCGCAGAAATAGATGTATCTAGACATACATCCATTTCTGCGAC
AAGTAATTCCGAACTGAGGG------------------------------------------------------------
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-----------------------------------------------------------------------------AGT
ATAAGTTTGAGCAATCAACAGTTGAACACAAGTACTTCCTCCGTTCATAAACATAAGATGTTTTTGAGATTTCAATATGG
ACTACAGACAGGCTGAAATGAGTGACCAAACACACTAAAACGTGTCTATATACATCCAACTCAGAAAAAAGTTACTAGAA
AATCTTATTTGTGAACAAAGGAGTACATAGCTAGACTGG--ACATCTTTGACATACTACCTCCGTTCCAAATTACTCTGT
CGCTGAAATGGATGTATCTAGAACTAAAATACATCTAGATACATCCATACGTGCGACAAGTAATTCGGAACGTTGGGAGT
ACATTTATACATTCAAATCGTCCATCCAAAGAGCATTACCGCAAATGCACGGATCCAACTTCACTTTAAGCAGAACGCCC
AGAAAGATACATTTCTGCGGTGGCAGTATGCAATGCAGCTCCAATTGGAAGGACATCCTCGTCGACGAAGAAATGCGGGT
TGTGAGCAGAGTGGACCGAACCGACTTTCTCATTTCTAATGCCGATACCAAACATAACGCCAGGAACTAACTGTTGGTAG
AATGCAAAGTCTTCCCCTGCCATGATCTTCTCTCCGGGCTTCACCTTGTCTGGACCAAGCAAACTTCTGCCCACATTCTC
TACATGCTCGTGGAGTCTCTCATCATTGACGACGGCAGGATACATTGGGTGGGAGGGAGCCCCCAATATCTCCGTAACTC
CCGTGCACCTATGTACAGCTGCCTGCCCTTCTACTACCTGGAACAAGG----GCATTTATTCAGGATGAT----TTTGCG
TTGCACCGATAGTAAAGCTGTTTAATAAGCATGTCCTGATGTCTAAGTCCGACTCTTCAGAGAATGCACACAAGGTGCTG
CTAGTG
>chr2B_560
TCC-----------------------------------------------------------------------------
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--TTTTAATCCCGATCATACACTGGAAGCAGTTAGAGGTGCT-------TTTGCATCTCAATTACGTACTTGACCAAATA
CCAGAGAAGCTCAATTTAGGCCAATCGTTGGCAAACCAATCTGATGCGCAGGTATTACTTCGGAACCAGTAGGGAGTTGA
ACTAACTGATGACATTGAGTCACAGTGCGTGTCACTACGT-----CAATACCAGCTTCTCATCAAACTGGCCTGA-----
---CCATCACCAACTCCAAACAGAACAGAAGTCGCTTTGCTTAATCTGGCCAACCACCAACCTAATCACACCCCGATCTA
CCCATCATGTTAT-------CCTGCATAAATATGCATGCATGATCCCTGTTGTCTGCACCAAGCAAGCTGAGAACCAATC
CTGCACCCAATTACCCAGAAATCGGAGAGCACACTGCACACAGCTTCCTGAAATGGCTGTCAGCAGCTGTAGCTTCTTGG
CCATTGCCATGGCCCTCGCTCTCCTTAGCGGCCACATGGCCCACGCCGGCCGCCTCCTGGCGGACACCACGGAGGCAGCA
GCGCCCACTGCAACGCCTGCCGCTGTCTCGGGCATCCCCGCACCGAAGCCGCCCGTGCCCACCATGCCTACAATGCCACC
AGTGCCAACCGTACCCGCGCTCGCCACACCGCAGGTCACAGTGCCGCCGATGCCGGCCGTGCCCGCGCTCACTGTCCCGC
AGCTCACGGCGCCCCCCATGCCGGCCGTGCCCGCGATCACCGTGCCCCAGGTCACGTTGCCGCCCATGCCGGCCGTCCCT
GCGCTCACCGTGCCCAAGGTCACGTTGCCGCCCATGCCGGCCGTCCCCGCGGTCACTGTGCCCAAGGTCACGTTGCCGCC
CATGCCCGCAGTTGTTGTGCCGAAGGTGACGATGCCGCCAATGCCTGCAATTCCATCCATCTCCATCCCCAAGGTGGCAT
TGCCTCCGATGCCTTCCATTCCCACTGTGAACGTGCCGATGCCATTCCTTGCGCCACCTCCTTCAGCATAGGCACGAACC
AGAGCACCGGGAGCGGGAATCTACGATGCTGGTTCAATGATTTTGGGAATGTTTACTTGATCATTTGATTTTGGCCATTT
ACCGTTGGCCAGCTTGTTTACATTGTGCGATTCCTATTTTGTTTTTGTGTTTGTGTAGTAT--------------GTAGT
AC--TATTGGGCTTGTCAATGGCCATCTCTTTTTCTTTCTCTTTGTACTGAGTTTTTACAATGAACATGTATGTCATTTT
TATCACATTTA-----------CTGCTATGTACTTATTGAGCATTAGCCCCCCATGTGCGGTCTAACTCCAACAAATCTG
CCTTCTGACAAATGTGCATTTGAGCATTGATTTTTTTTATAACTCATCTCTTCCTTTATTCCATCAAAACGATCGTATCA
CTTGCAAGGAAGGGTGGCGAATCCATCCAGACAGGAGTAGAGTACTACTTAGCTATTTTAGCTACATGAGCAGCCTGATT
ACAATGCTCAAACAAGACATGGTTAAAATCTTAAGACAGTCATCGATAATGGCACTTGCTACTGAATTCAAGACACCTTC
ATTAAGATCATTGACAACCCTTCATTATCCGAGGCCACTTCAATCTTGCTGCAACCCACCATACGTGCCTTCTGACAAAT
ATGCATTTGAGCCTTGAAAAGTTGAACACAAGTAGGAGTAC---------------------------------------
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----------------------GTACACAACTAGACTTGGAACATCTTTGACA---------------------------
-------------------------------------------------------------------------------T
ACATTTATACATTCAAATCGTC--------------------GAATGCACGCTTCCATCTTCATTTTGAGTGGAACGCCC
AGAAAGATACATTTCTGCGGTGGCAGTATGCAATGCAGCTCCAATCGGAAGGACATCCTCGTCGACAAAGAAATGTGGGT
TGTGAGCAGAGTGGACCGAACCGACTTTCTCATTTCTAATACCGATACCAAACATAACGCCAGGAACTAACTGTTGGTAG
AATGCAAAGTCTTCCCCTGCCATGATCTTCTCTCCGGGCTTCACCTTGTCTGGACCAAGCAAACTTCTGCCCACATTCTC
TACATGCTGGTGCAGTCTCTCATCATTGACGACGGCAGGATACATTGGGTGGGAGGGAGCCCCCAATATCTCCGTAACTC
CCCTGCATCTATGTACAGCTGCCTGCCCTTCTACTACCTGGAAGAAGCAAGAGCATTTACTCAGGATGCTACAGTTTGCA
TTGCACCCATAGTAAAGCTGTTTAATA-----------------------------------------------------
------
>SNPs
S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S-
--------------------------------S-------S---------------------------------------
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----------------------------------------SSSSS---S-----------------S-------------
-------------------------------S------S----S---------------------------S--------
------------SSSSSSSS--S--------------------SS-------------S---------------------
-----------------------------S--------------------------------------------------
----------------------------S---S-----------------------------------------------
------S----------------------------------S--------------------------------------
-------------------S-------------------------S--------S---------------S-S--S--S-
--S-------S---------S-----------------------S-----------------------------------
-----------------------------------------------S--------------------------------
------------------------------------------------------------------S-------------
--------------------------------------------SS----------------------------------
---------------S----------------S-------------S---------------------------------
------S---S-------------------------------------S-----S-SSSSSSSSSSSSSSSSSSS-----
-------------------------------------------------------------S------------------
----------------------------------------------------------S---------------------
--------SS-------------------S--------------------------------------------------
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------------------------S-------------------------------------------------------
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------------------------SS-S-----------S----------------------------------------
------------------------------------------------------------S-------------------
-------------------------S--S-----------------------------S---------------------
-----------------------------------------------------S--------------------------
--------------------S-----------------------------------------------------------
-----------------------------------------------S--------------------------------
-S-S-----------------S---------------------------------------------------------S
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>forward_105
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-----GAGAGAGAGAAAGAGGGCGC-------------------------------------------------------
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>reverse_1687
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------CGCCGGCTTGTTTACATTGT------------------------------------------------------
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