Multiple sequence alignment - TraesCS2A01G373100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G373100 chr2A 100.000 3997 0 0 1 3997 615519370 615523366 0.000000e+00 7382
1 TraesCS2A01G373100 chr2D 92.035 2737 132 32 301 2997 473584314 473587004 0.000000e+00 3768
2 TraesCS2A01G373100 chr2D 90.704 710 38 18 3295 3994 473587296 473587987 0.000000e+00 920
3 TraesCS2A01G373100 chr2D 78.261 207 21 9 2993 3185 473587034 473587230 1.170000e-20 111
4 TraesCS2A01G373100 chr2B 92.693 2436 118 22 296 2683 553975752 553978175 0.000000e+00 3458
5 TraesCS2A01G373100 chr2B 89.630 675 31 11 3316 3977 553978757 553979405 0.000000e+00 822
6 TraesCS2A01G373100 chr2B 94.570 221 12 0 2777 2997 553978174 553978394 3.820000e-90 342
7 TraesCS2A01G373100 chrUn 93.206 942 34 9 1002 1929 75463745 75462820 0.000000e+00 1358
8 TraesCS2A01G373100 chrUn 88.525 1098 80 18 1917 2997 75461788 75460720 0.000000e+00 1288
9 TraesCS2A01G373100 chrUn 90.496 705 33 13 282 973 75464427 75463744 0.000000e+00 900
10 TraesCS2A01G373100 chr7B 91.438 292 24 1 1 291 736633227 736632936 2.240000e-107 399
11 TraesCS2A01G373100 chr4B 90.411 292 26 2 1 291 608664384 608664094 2.250000e-102 383
12 TraesCS2A01G373100 chr4D 93.333 165 11 0 2 166 73962669 73962833 1.110000e-60 244
13 TraesCS2A01G373100 chr4A 81.667 300 42 12 3 296 91229412 91229704 1.860000e-58 237
14 TraesCS2A01G373100 chr3D 73.971 680 110 42 900 1562 570035912 570036541 3.130000e-51 213
15 TraesCS2A01G373100 chr3A 86.486 185 24 1 32 215 16591740 16591556 6.770000e-48 202
16 TraesCS2A01G373100 chr3A 80.851 235 30 9 980 1207 702574617 702574843 1.910000e-38 171
17 TraesCS2A01G373100 chr3A 79.518 166 20 10 1234 1391 702576172 702576331 5.460000e-19 106
18 TraesCS2A01G373100 chr3B 81.481 243 42 2 967 1207 756671570 756671811 3.150000e-46 196
19 TraesCS2A01G373100 chr7A 81.250 224 39 2 5 227 100073833 100073612 1.140000e-40 178
20 TraesCS2A01G373100 chr7D 85.629 167 24 0 44 210 66097371 66097205 4.110000e-40 176


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G373100 chr2A 615519370 615523366 3996 False 7382.000000 7382 100.000000 1 3997 1 chr2A.!!$F1 3996
1 TraesCS2A01G373100 chr2D 473584314 473587987 3673 False 1599.666667 3768 87.000000 301 3994 3 chr2D.!!$F1 3693
2 TraesCS2A01G373100 chr2B 553975752 553979405 3653 False 1540.666667 3458 92.297667 296 3977 3 chr2B.!!$F1 3681
3 TraesCS2A01G373100 chrUn 75460720 75464427 3707 True 1182.000000 1358 90.742333 282 2997 3 chrUn.!!$R1 2715
4 TraesCS2A01G373100 chr3D 570035912 570036541 629 False 213.000000 213 73.971000 900 1562 1 chr3D.!!$F1 662


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
271 272 0.039035 ACTGTTCGAGAGAGAGGGCT 59.961 55.0 0.82 0.0 43.69 5.19 F
296 297 0.109597 CTTGTTCTGTGCGCCAATCC 60.110 55.0 4.18 0.0 0.00 3.01 F
1050 1090 0.325110 TTGCTGAGGAGGAGGAGGAG 60.325 60.0 0.00 0.0 0.00 3.69 F
1573 1636 0.914551 CGTAGATTCACGGCGACAAG 59.085 55.0 16.62 0.0 38.26 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1598 1663 3.189287 AGCTCAAATAAGCCAACAAGACG 59.811 43.478 0.00 0.00 43.56 4.18 R
2062 3186 3.232720 TGAACCCCAAGTAAAGTTCCC 57.767 47.619 0.00 0.00 38.24 3.97 R
2492 3628 0.807496 GCAGAGGGATGCAAACACTC 59.193 55.000 15.69 15.69 45.77 3.51 R
3103 4285 0.317269 CCGGAATCATGCATCGCAAC 60.317 55.000 0.00 0.00 43.62 4.17 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.787847 GTTGTCTCGGGCATCAACG 59.212 57.895 3.07 0.00 32.56 4.10
19 20 1.375396 TTGTCTCGGGCATCAACGG 60.375 57.895 0.00 0.00 0.00 4.44
20 21 3.195698 GTCTCGGGCATCAACGGC 61.196 66.667 0.00 0.00 0.00 5.68
21 22 4.812476 TCTCGGGCATCAACGGCG 62.812 66.667 4.80 4.80 0.00 6.46
45 46 4.540153 CGAGGTCGCCATTTCCAT 57.460 55.556 0.00 0.00 0.00 3.41
46 47 2.016961 CGAGGTCGCCATTTCCATG 58.983 57.895 0.00 0.00 0.00 3.66
47 48 0.744414 CGAGGTCGCCATTTCCATGT 60.744 55.000 0.00 0.00 0.00 3.21
48 49 0.734889 GAGGTCGCCATTTCCATGTG 59.265 55.000 0.00 0.00 0.00 3.21
49 50 0.680921 AGGTCGCCATTTCCATGTGG 60.681 55.000 0.00 0.00 38.55 4.17
50 51 0.965363 GGTCGCCATTTCCATGTGGT 60.965 55.000 0.00 0.00 37.81 4.16
51 52 0.451783 GTCGCCATTTCCATGTGGTC 59.548 55.000 0.00 0.00 37.81 4.02
52 53 1.024046 TCGCCATTTCCATGTGGTCG 61.024 55.000 0.00 6.34 37.81 4.79
53 54 1.139520 GCCATTTCCATGTGGTCGC 59.860 57.895 0.00 0.00 37.81 5.19
54 55 1.315257 GCCATTTCCATGTGGTCGCT 61.315 55.000 0.00 0.00 37.81 4.93
55 56 0.452987 CCATTTCCATGTGGTCGCTG 59.547 55.000 0.00 0.00 36.34 5.18
56 57 0.179156 CATTTCCATGTGGTCGCTGC 60.179 55.000 0.00 0.00 36.34 5.25
57 58 0.322816 ATTTCCATGTGGTCGCTGCT 60.323 50.000 0.00 0.00 36.34 4.24
58 59 0.955428 TTTCCATGTGGTCGCTGCTC 60.955 55.000 0.00 0.00 36.34 4.26
59 60 2.803155 TTCCATGTGGTCGCTGCTCC 62.803 60.000 0.00 0.77 36.34 4.70
60 61 2.046988 CATGTGGTCGCTGCTCCA 60.047 61.111 8.86 8.86 0.00 3.86
61 62 1.672030 CATGTGGTCGCTGCTCCAA 60.672 57.895 13.33 6.56 35.38 3.53
62 63 1.376424 ATGTGGTCGCTGCTCCAAG 60.376 57.895 13.33 0.00 35.38 3.61
63 64 3.426568 GTGGTCGCTGCTCCAAGC 61.427 66.667 13.33 0.00 42.82 4.01
64 65 3.630013 TGGTCGCTGCTCCAAGCT 61.630 61.111 10.18 0.00 42.97 3.74
65 66 3.123620 GGTCGCTGCTCCAAGCTG 61.124 66.667 0.00 1.06 42.97 4.24
66 67 3.123620 GTCGCTGCTCCAAGCTGG 61.124 66.667 7.75 0.00 42.97 4.85
67 68 3.630013 TCGCTGCTCCAAGCTGGT 61.630 61.111 7.75 0.00 42.97 4.00
68 69 3.429141 CGCTGCTCCAAGCTGGTG 61.429 66.667 7.75 0.00 42.97 4.17
69 70 3.060615 GCTGCTCCAAGCTGGTGG 61.061 66.667 0.00 0.00 42.97 4.61
70 71 3.060615 CTGCTCCAAGCTGGTGGC 61.061 66.667 0.00 7.49 42.97 5.01
99 100 3.842923 CGCTGAGCACGGGATCCT 61.843 66.667 12.58 0.00 0.00 3.24
100 101 2.202987 GCTGAGCACGGGATCCTG 60.203 66.667 19.66 19.66 0.00 3.86
101 102 2.202987 CTGAGCACGGGATCCTGC 60.203 66.667 21.17 18.53 0.00 4.85
102 103 4.147449 TGAGCACGGGATCCTGCG 62.147 66.667 21.17 12.71 38.51 5.18
103 104 4.899239 GAGCACGGGATCCTGCGG 62.899 72.222 21.17 14.03 38.51 5.69
106 107 4.776322 CACGGGATCCTGCGGCAA 62.776 66.667 21.17 0.00 0.00 4.52
107 108 4.778143 ACGGGATCCTGCGGCAAC 62.778 66.667 21.17 0.00 0.00 4.17
120 121 4.162690 GCAACGAGGCCGGGATCT 62.163 66.667 2.18 0.00 40.78 2.75
121 122 2.107141 CAACGAGGCCGGGATCTC 59.893 66.667 2.18 2.85 40.78 2.75
122 123 3.155167 AACGAGGCCGGGATCTCC 61.155 66.667 2.18 0.00 40.78 3.71
133 134 1.551452 GGGATCTCCGGATCTGTAGG 58.449 60.000 3.57 0.00 45.53 3.18
134 135 0.892063 GGATCTCCGGATCTGTAGGC 59.108 60.000 3.57 0.00 45.53 3.93
135 136 0.523966 GATCTCCGGATCTGTAGGCG 59.476 60.000 3.57 0.00 43.55 5.52
136 137 0.896019 ATCTCCGGATCTGTAGGCGG 60.896 60.000 3.57 0.00 0.00 6.13
137 138 1.528542 CTCCGGATCTGTAGGCGGA 60.529 63.158 3.57 8.05 0.00 5.54
138 139 1.519751 CTCCGGATCTGTAGGCGGAG 61.520 65.000 17.61 17.61 38.28 4.63
139 140 2.565645 CCGGATCTGTAGGCGGAGG 61.566 68.421 0.00 0.00 32.83 4.30
140 141 1.528542 CGGATCTGTAGGCGGAGGA 60.529 63.158 0.00 0.00 32.83 3.71
141 142 1.519751 CGGATCTGTAGGCGGAGGAG 61.520 65.000 0.00 0.00 32.83 3.69
142 143 1.182385 GGATCTGTAGGCGGAGGAGG 61.182 65.000 0.00 0.00 32.83 4.30
143 144 1.152440 ATCTGTAGGCGGAGGAGGG 60.152 63.158 0.00 0.00 32.83 4.30
144 145 2.664835 ATCTGTAGGCGGAGGAGGGG 62.665 65.000 0.00 0.00 32.83 4.79
145 146 3.352748 TGTAGGCGGAGGAGGGGA 61.353 66.667 0.00 0.00 0.00 4.81
146 147 2.201771 GTAGGCGGAGGAGGGGAT 59.798 66.667 0.00 0.00 0.00 3.85
147 148 1.909287 GTAGGCGGAGGAGGGGATC 60.909 68.421 0.00 0.00 0.00 3.36
209 210 2.809601 CGGCGTTGAGGGTTCGAG 60.810 66.667 0.00 0.00 0.00 4.04
210 211 2.342648 GGCGTTGAGGGTTCGAGT 59.657 61.111 0.00 0.00 0.00 4.18
211 212 2.027625 GGCGTTGAGGGTTCGAGTG 61.028 63.158 0.00 0.00 0.00 3.51
212 213 2.027625 GCGTTGAGGGTTCGAGTGG 61.028 63.158 0.00 0.00 0.00 4.00
213 214 1.374252 CGTTGAGGGTTCGAGTGGG 60.374 63.158 0.00 0.00 0.00 4.61
214 215 1.812686 CGTTGAGGGTTCGAGTGGGA 61.813 60.000 0.00 0.00 0.00 4.37
215 216 0.613777 GTTGAGGGTTCGAGTGGGAT 59.386 55.000 0.00 0.00 0.00 3.85
216 217 1.829222 GTTGAGGGTTCGAGTGGGATA 59.171 52.381 0.00 0.00 0.00 2.59
217 218 1.776662 TGAGGGTTCGAGTGGGATAG 58.223 55.000 0.00 0.00 0.00 2.08
218 219 1.006758 TGAGGGTTCGAGTGGGATAGT 59.993 52.381 0.00 0.00 0.00 2.12
219 220 1.409427 GAGGGTTCGAGTGGGATAGTG 59.591 57.143 0.00 0.00 0.00 2.74
220 221 0.464452 GGGTTCGAGTGGGATAGTGG 59.536 60.000 0.00 0.00 0.00 4.00
221 222 1.192428 GGTTCGAGTGGGATAGTGGT 58.808 55.000 0.00 0.00 0.00 4.16
222 223 1.134788 GGTTCGAGTGGGATAGTGGTG 60.135 57.143 0.00 0.00 0.00 4.17
223 224 1.134788 GTTCGAGTGGGATAGTGGTGG 60.135 57.143 0.00 0.00 0.00 4.61
224 225 0.686441 TCGAGTGGGATAGTGGTGGG 60.686 60.000 0.00 0.00 0.00 4.61
225 226 1.527370 GAGTGGGATAGTGGTGGGC 59.473 63.158 0.00 0.00 0.00 5.36
226 227 2.189521 GTGGGATAGTGGTGGGCG 59.810 66.667 0.00 0.00 0.00 6.13
227 228 2.285069 TGGGATAGTGGTGGGCGT 60.285 61.111 0.00 0.00 0.00 5.68
228 229 2.189521 GGGATAGTGGTGGGCGTG 59.810 66.667 0.00 0.00 0.00 5.34
229 230 2.363975 GGGATAGTGGTGGGCGTGA 61.364 63.158 0.00 0.00 0.00 4.35
230 231 1.600107 GGATAGTGGTGGGCGTGAA 59.400 57.895 0.00 0.00 0.00 3.18
231 232 0.462047 GGATAGTGGTGGGCGTGAAG 60.462 60.000 0.00 0.00 0.00 3.02
232 233 0.462047 GATAGTGGTGGGCGTGAAGG 60.462 60.000 0.00 0.00 0.00 3.46
233 234 0.907704 ATAGTGGTGGGCGTGAAGGA 60.908 55.000 0.00 0.00 0.00 3.36
234 235 1.541310 TAGTGGTGGGCGTGAAGGAG 61.541 60.000 0.00 0.00 0.00 3.69
235 236 3.636231 TGGTGGGCGTGAAGGAGG 61.636 66.667 0.00 0.00 0.00 4.30
236 237 3.319198 GGTGGGCGTGAAGGAGGA 61.319 66.667 0.00 0.00 0.00 3.71
237 238 2.747686 GTGGGCGTGAAGGAGGAA 59.252 61.111 0.00 0.00 0.00 3.36
238 239 1.376037 GTGGGCGTGAAGGAGGAAG 60.376 63.158 0.00 0.00 0.00 3.46
239 240 2.269241 GGGCGTGAAGGAGGAAGG 59.731 66.667 0.00 0.00 0.00 3.46
240 241 2.291043 GGGCGTGAAGGAGGAAGGA 61.291 63.158 0.00 0.00 0.00 3.36
241 242 1.219393 GGCGTGAAGGAGGAAGGAG 59.781 63.158 0.00 0.00 0.00 3.69
242 243 1.448717 GCGTGAAGGAGGAAGGAGC 60.449 63.158 0.00 0.00 0.00 4.70
243 244 1.975327 CGTGAAGGAGGAAGGAGCA 59.025 57.895 0.00 0.00 0.00 4.26
244 245 0.108424 CGTGAAGGAGGAAGGAGCAG 60.108 60.000 0.00 0.00 0.00 4.24
245 246 1.270907 GTGAAGGAGGAAGGAGCAGA 58.729 55.000 0.00 0.00 0.00 4.26
246 247 1.206849 GTGAAGGAGGAAGGAGCAGAG 59.793 57.143 0.00 0.00 0.00 3.35
247 248 0.829990 GAAGGAGGAAGGAGCAGAGG 59.170 60.000 0.00 0.00 0.00 3.69
248 249 1.271127 AAGGAGGAAGGAGCAGAGGC 61.271 60.000 0.00 0.00 41.61 4.70
249 250 1.992277 GGAGGAAGGAGCAGAGGCA 60.992 63.158 0.00 0.00 44.61 4.75
250 251 1.557269 GGAGGAAGGAGCAGAGGCAA 61.557 60.000 0.00 0.00 44.61 4.52
251 252 0.326264 GAGGAAGGAGCAGAGGCAAA 59.674 55.000 0.00 0.00 44.61 3.68
252 253 0.773644 AGGAAGGAGCAGAGGCAAAA 59.226 50.000 0.00 0.00 44.61 2.44
253 254 0.884514 GGAAGGAGCAGAGGCAAAAC 59.115 55.000 0.00 0.00 44.61 2.43
254 255 1.546548 GGAAGGAGCAGAGGCAAAACT 60.547 52.381 0.00 0.00 44.61 2.66
255 256 1.538950 GAAGGAGCAGAGGCAAAACTG 59.461 52.381 0.00 0.00 44.61 3.16
256 257 0.475906 AGGAGCAGAGGCAAAACTGT 59.524 50.000 0.00 0.00 44.61 3.55
257 258 1.133668 AGGAGCAGAGGCAAAACTGTT 60.134 47.619 0.00 0.00 44.61 3.16
258 259 1.268079 GGAGCAGAGGCAAAACTGTTC 59.732 52.381 0.00 0.00 44.61 3.18
259 260 0.947244 AGCAGAGGCAAAACTGTTCG 59.053 50.000 0.00 0.00 44.61 3.95
260 261 0.944386 GCAGAGGCAAAACTGTTCGA 59.056 50.000 0.00 0.00 40.72 3.71
261 262 1.069636 GCAGAGGCAAAACTGTTCGAG 60.070 52.381 0.00 0.00 40.72 4.04
262 263 2.483876 CAGAGGCAAAACTGTTCGAGA 58.516 47.619 0.00 0.00 0.00 4.04
263 264 2.478134 CAGAGGCAAAACTGTTCGAGAG 59.522 50.000 0.00 0.00 0.00 3.20
264 265 2.365617 AGAGGCAAAACTGTTCGAGAGA 59.634 45.455 0.00 0.00 39.20 3.10
265 266 2.734079 GAGGCAAAACTGTTCGAGAGAG 59.266 50.000 0.00 0.00 43.69 3.20
266 267 2.365617 AGGCAAAACTGTTCGAGAGAGA 59.634 45.455 0.00 0.00 43.69 3.10
267 268 2.734079 GGCAAAACTGTTCGAGAGAGAG 59.266 50.000 0.00 0.00 43.69 3.20
268 269 2.734079 GCAAAACTGTTCGAGAGAGAGG 59.266 50.000 0.00 0.00 43.69 3.69
269 270 3.321497 CAAAACTGTTCGAGAGAGAGGG 58.679 50.000 0.00 0.00 43.69 4.30
270 271 0.892063 AACTGTTCGAGAGAGAGGGC 59.108 55.000 0.82 0.00 43.69 5.19
271 272 0.039035 ACTGTTCGAGAGAGAGGGCT 59.961 55.000 0.82 0.00 43.69 5.19
272 273 0.455410 CTGTTCGAGAGAGAGGGCTG 59.545 60.000 0.00 0.00 43.69 4.85
273 274 1.140804 GTTCGAGAGAGAGGGCTGC 59.859 63.158 0.00 0.00 43.69 5.25
274 275 1.000270 TTCGAGAGAGAGGGCTGCT 60.000 57.895 0.00 0.00 43.69 4.24
275 276 1.318886 TTCGAGAGAGAGGGCTGCTG 61.319 60.000 0.00 0.00 43.69 4.41
276 277 2.784356 CGAGAGAGAGGGCTGCTGG 61.784 68.421 0.00 0.00 0.00 4.85
277 278 3.082701 AGAGAGAGGGCTGCTGGC 61.083 66.667 8.77 8.77 40.90 4.85
278 279 3.082701 GAGAGAGGGCTGCTGGCT 61.083 66.667 16.61 3.18 41.46 4.75
279 280 2.610233 AGAGAGGGCTGCTGGCTT 60.610 61.111 16.61 9.44 41.46 4.35
280 281 2.438075 GAGAGGGCTGCTGGCTTG 60.438 66.667 16.61 0.00 41.46 4.01
281 282 3.255397 AGAGGGCTGCTGGCTTGT 61.255 61.111 16.61 5.06 41.46 3.16
282 283 2.282745 GAGGGCTGCTGGCTTGTT 60.283 61.111 16.61 0.99 41.46 2.83
283 284 2.282745 AGGGCTGCTGGCTTGTTC 60.283 61.111 16.61 0.00 41.46 3.18
284 285 2.282745 GGGCTGCTGGCTTGTTCT 60.283 61.111 16.61 0.00 41.46 3.01
285 286 2.633509 GGGCTGCTGGCTTGTTCTG 61.634 63.158 16.61 0.00 41.46 3.02
286 287 1.900498 GGCTGCTGGCTTGTTCTGT 60.900 57.895 10.05 0.00 41.46 3.41
287 288 1.285023 GCTGCTGGCTTGTTCTGTG 59.715 57.895 0.00 0.00 38.06 3.66
288 289 1.285023 CTGCTGGCTTGTTCTGTGC 59.715 57.895 0.00 0.00 0.00 4.57
289 290 2.253452 GCTGGCTTGTTCTGTGCG 59.747 61.111 0.00 0.00 0.00 5.34
290 291 2.253452 CTGGCTTGTTCTGTGCGC 59.747 61.111 0.00 0.00 0.00 6.09
291 292 3.259425 CTGGCTTGTTCTGTGCGCC 62.259 63.158 4.18 0.00 41.06 6.53
292 293 3.286751 GGCTTGTTCTGTGCGCCA 61.287 61.111 4.18 0.90 40.41 5.69
293 294 2.721231 GCTTGTTCTGTGCGCCAA 59.279 55.556 4.18 0.00 0.00 4.52
294 295 1.286880 GCTTGTTCTGTGCGCCAAT 59.713 52.632 4.18 0.00 0.00 3.16
295 296 0.730494 GCTTGTTCTGTGCGCCAATC 60.730 55.000 4.18 0.00 0.00 2.67
296 297 0.109597 CTTGTTCTGTGCGCCAATCC 60.110 55.000 4.18 0.00 0.00 3.01
297 298 0.821301 TTGTTCTGTGCGCCAATCCA 60.821 50.000 4.18 0.00 0.00 3.41
298 299 1.236616 TGTTCTGTGCGCCAATCCAG 61.237 55.000 4.18 3.30 0.00 3.86
303 304 4.445710 TGCGCCAATCCAGCCCAT 62.446 61.111 4.18 0.00 0.00 4.00
447 450 2.033448 CGCCAACTACAAGCCCCA 59.967 61.111 0.00 0.00 0.00 4.96
460 463 3.886001 CCCCACCTAATCGCCCCC 61.886 72.222 0.00 0.00 0.00 5.40
587 602 3.701241 TGTTCCTTCGTTGCAATTGTTC 58.299 40.909 0.59 0.00 0.00 3.18
745 764 2.031870 GGGGCATGTAAAATCCACTCC 58.968 52.381 0.00 0.00 0.00 3.85
753 772 5.187621 TGTAAAATCCACTCCCCCTTAAG 57.812 43.478 0.00 0.00 0.00 1.85
771 793 5.062308 CCTTAAGAGTTGTTGTATCGTCTGC 59.938 44.000 3.36 0.00 0.00 4.26
790 812 2.039216 TGCAGTCCCGATCTTTGGTAAA 59.961 45.455 0.00 0.00 0.00 2.01
837 866 5.584551 AAGTACAAAGGGACTGAAAGGAT 57.415 39.130 0.00 0.00 40.86 3.24
890 924 3.552604 TTTCGCCTACTGCAAACATTC 57.447 42.857 0.00 0.00 41.33 2.67
912 946 5.030147 TCCCTGGATAGTTGTATCTTGTGT 58.970 41.667 0.00 0.00 36.11 3.72
1050 1090 0.325110 TTGCTGAGGAGGAGGAGGAG 60.325 60.000 0.00 0.00 0.00 3.69
1161 1201 6.822442 TGTAAGTTGGTTTCATCTCACAGTA 58.178 36.000 0.00 0.00 0.00 2.74
1235 1277 7.678947 AAGAAGATGTGGTGTCTCTAAATTG 57.321 36.000 0.00 0.00 0.00 2.32
1345 1399 8.829373 ATAGAGTCCCAGAGCAAATTATTTTT 57.171 30.769 0.00 0.00 0.00 1.94
1366 1429 6.826893 TTTTTGTTTGCACTAAGATGAAGC 57.173 33.333 0.00 0.00 0.00 3.86
1367 1430 5.512753 TTTGTTTGCACTAAGATGAAGCA 57.487 34.783 0.00 0.00 0.00 3.91
1368 1431 4.754372 TGTTTGCACTAAGATGAAGCAG 57.246 40.909 0.00 0.00 36.47 4.24
1369 1432 4.136796 TGTTTGCACTAAGATGAAGCAGT 58.863 39.130 0.00 0.00 36.47 4.40
1370 1433 5.304778 TGTTTGCACTAAGATGAAGCAGTA 58.695 37.500 0.00 0.00 36.47 2.74
1371 1434 5.409520 TGTTTGCACTAAGATGAAGCAGTAG 59.590 40.000 0.00 0.00 36.47 2.57
1372 1435 4.128925 TGCACTAAGATGAAGCAGTAGG 57.871 45.455 0.00 0.00 0.00 3.18
1415 1478 6.951971 AGAGAGTTCTTGCCATTAGTATGTT 58.048 36.000 0.00 0.00 0.00 2.71
1534 1597 8.664798 CGTTATCAGATACAAATTCCTGTTCAA 58.335 33.333 0.00 0.00 0.00 2.69
1570 1633 1.319669 GTTTCGTAGATTCACGGCGAC 59.680 52.381 16.62 0.00 42.19 5.19
1573 1636 0.914551 CGTAGATTCACGGCGACAAG 59.085 55.000 16.62 0.00 38.26 3.16
1598 1663 6.362820 GCTAGGTAGTTATGCGTTTAGTGATC 59.637 42.308 0.00 0.00 0.00 2.92
1614 1680 4.579869 AGTGATCGTCTTGTTGGCTTATT 58.420 39.130 0.00 0.00 0.00 1.40
1628 1694 4.766375 TGGCTTATTTGAGCTACCTGTAC 58.234 43.478 0.00 0.00 42.32 2.90
1784 1851 4.330620 TCGCTTTTGAAGACGTTTACTTGT 59.669 37.500 0.00 0.00 32.51 3.16
1878 1954 7.807907 AGTTTATCTTATTGAACTTTTGGCACG 59.192 33.333 0.00 0.00 0.00 5.34
1952 3073 4.105057 AGTGAATTTGTTGGTAGGGGTGTA 59.895 41.667 0.00 0.00 0.00 2.90
1953 3074 4.457949 GTGAATTTGTTGGTAGGGGTGTAG 59.542 45.833 0.00 0.00 0.00 2.74
1955 3076 5.014755 TGAATTTGTTGGTAGGGGTGTAGAT 59.985 40.000 0.00 0.00 0.00 1.98
1956 3077 4.563140 TTTGTTGGTAGGGGTGTAGATC 57.437 45.455 0.00 0.00 0.00 2.75
1958 3079 3.798515 TGTTGGTAGGGGTGTAGATCTT 58.201 45.455 0.00 0.00 0.00 2.40
1959 3080 4.172807 TGTTGGTAGGGGTGTAGATCTTT 58.827 43.478 0.00 0.00 0.00 2.52
1960 3081 4.224370 TGTTGGTAGGGGTGTAGATCTTTC 59.776 45.833 0.00 0.00 0.00 2.62
1961 3082 4.069312 TGGTAGGGGTGTAGATCTTTCA 57.931 45.455 0.00 0.00 0.00 2.69
2016 3140 6.593807 TGTTAGAACTTTACTTTGGGTGCTA 58.406 36.000 0.00 0.00 0.00 3.49
2035 3159 9.646427 GGGTGCTAATGTAATTTGTTTAATGAA 57.354 29.630 0.00 0.00 37.87 2.57
2062 3186 3.923017 AAGTTTGATCGCCTCCAAAAG 57.077 42.857 0.00 0.00 34.52 2.27
2081 3205 3.520691 AGGGAACTTTACTTGGGGTTC 57.479 47.619 0.00 0.00 37.44 3.62
2095 3219 6.478129 ACTTGGGGTTCATATTTTAGAACGA 58.522 36.000 0.00 0.00 43.79 3.85
2096 3220 7.116736 ACTTGGGGTTCATATTTTAGAACGAT 58.883 34.615 0.00 0.00 43.79 3.73
2135 3259 9.143155 ACCCATTTATCTGGATATGTTAAAACC 57.857 33.333 0.00 0.00 38.69 3.27
2325 3453 8.068892 TGTACCAGTTAACTTCATTGGTTTTT 57.931 30.769 18.40 0.80 41.97 1.94
2331 3461 8.197439 CAGTTAACTTCATTGGTTTTTCTTCCT 58.803 33.333 5.07 0.00 0.00 3.36
2492 3628 9.079833 CATGCTATTTATTTTCAGAAAGTGGTG 57.920 33.333 1.20 0.00 0.00 4.17
2560 3696 4.133820 CGCATGTCCTGTTAAATCCCATA 58.866 43.478 0.00 0.00 0.00 2.74
2570 3706 6.152154 CCTGTTAAATCCCATAACCGAGTTTT 59.848 38.462 0.00 0.00 33.32 2.43
2607 3743 2.146342 CCCTGTGAATACGATGATGCC 58.854 52.381 0.00 0.00 0.00 4.40
2648 3786 2.677836 GCTTGTTTCGTATGAGATGGCA 59.322 45.455 0.00 0.00 0.00 4.92
2649 3787 3.485877 GCTTGTTTCGTATGAGATGGCAC 60.486 47.826 0.00 0.00 0.00 5.01
2670 3812 4.022935 CACCTTGTTCACACATAGCATGTT 60.023 41.667 0.00 0.00 42.70 2.71
2725 3867 2.225091 TGCCATTCATGAGGAACCTTGT 60.225 45.455 5.19 0.00 38.60 3.16
2727 3869 3.119352 GCCATTCATGAGGAACCTTGTTC 60.119 47.826 5.19 0.00 38.60 3.18
2730 3872 2.348472 TCATGAGGAACCTTGTTCCCT 58.652 47.619 19.62 9.32 39.39 4.20
2732 3874 0.771127 TGAGGAACCTTGTTCCCTGG 59.229 55.000 19.62 0.00 39.39 4.45
2733 3875 0.609406 GAGGAACCTTGTTCCCTGGC 60.609 60.000 19.62 6.29 39.39 4.85
2735 3877 2.597510 AACCTTGTTCCCTGGCGC 60.598 61.111 0.00 0.00 0.00 6.53
2738 3880 4.697756 CTTGTTCCCTGGCGCCGA 62.698 66.667 23.90 10.59 0.00 5.54
2773 3915 8.776470 CAATTTTTACAGTGGATTCATTTGCTT 58.224 29.630 0.00 0.00 0.00 3.91
2813 3955 2.673775 TTCCAGATGCTCCACCAAAA 57.326 45.000 0.00 0.00 0.00 2.44
2816 3958 1.548582 CCAGATGCTCCACCAAAACCT 60.549 52.381 0.00 0.00 0.00 3.50
2824 3966 2.297033 CTCCACCAAAACCTGTTCATGG 59.703 50.000 11.26 11.26 36.27 3.66
2886 4028 0.598065 AAACATCAAGGAAGCACCGC 59.402 50.000 0.00 0.00 44.74 5.68
2997 4139 2.932261 ACAGGGACAAGGAGTTTTGAC 58.068 47.619 0.00 0.00 0.00 3.18
2998 4140 2.509964 ACAGGGACAAGGAGTTTTGACT 59.490 45.455 0.00 0.00 0.00 3.41
3000 4142 3.049344 AGGGACAAGGAGTTTTGACTCT 58.951 45.455 6.53 0.00 36.97 3.24
3001 4143 3.459969 AGGGACAAGGAGTTTTGACTCTT 59.540 43.478 6.53 0.00 31.09 2.85
3002 4144 3.815962 GGGACAAGGAGTTTTGACTCTTC 59.184 47.826 6.53 0.03 36.97 2.87
3003 4145 4.445019 GGGACAAGGAGTTTTGACTCTTCT 60.445 45.833 6.53 0.00 36.97 2.85
3004 4146 5.221661 GGGACAAGGAGTTTTGACTCTTCTA 60.222 44.000 6.53 0.00 36.97 2.10
3005 4147 6.289064 GGACAAGGAGTTTTGACTCTTCTAA 58.711 40.000 6.53 0.00 36.97 2.10
3006 4148 6.937465 GGACAAGGAGTTTTGACTCTTCTAAT 59.063 38.462 6.53 0.00 36.97 1.73
3007 4149 7.095017 GGACAAGGAGTTTTGACTCTTCTAATG 60.095 40.741 6.53 0.00 36.97 1.90
3008 4150 6.205658 ACAAGGAGTTTTGACTCTTCTAATGC 59.794 38.462 6.53 0.00 36.97 3.56
3009 4151 5.869579 AGGAGTTTTGACTCTTCTAATGCA 58.130 37.500 6.53 0.00 36.97 3.96
3041 4215 1.923356 TCCTTTGACCCTTGGAATGC 58.077 50.000 0.00 0.00 0.00 3.56
3042 4216 0.527565 CCTTTGACCCTTGGAATGCG 59.472 55.000 0.00 0.00 0.00 4.73
3044 4218 1.470098 CTTTGACCCTTGGAATGCGAG 59.530 52.381 0.00 0.00 0.00 5.03
3046 4220 1.198094 TGACCCTTGGAATGCGAGGA 61.198 55.000 9.87 0.00 32.11 3.71
3047 4221 0.181350 GACCCTTGGAATGCGAGGAT 59.819 55.000 9.87 0.00 32.11 3.24
3050 4224 1.417890 CCCTTGGAATGCGAGGATAGT 59.582 52.381 9.87 0.00 32.11 2.12
3052 4226 3.555168 CCCTTGGAATGCGAGGATAGTAC 60.555 52.174 9.87 0.00 32.11 2.73
3053 4227 3.322254 CCTTGGAATGCGAGGATAGTACT 59.678 47.826 1.20 0.00 32.11 2.73
3054 4228 4.551388 CTTGGAATGCGAGGATAGTACTC 58.449 47.826 0.00 0.00 0.00 2.59
3055 4229 2.891580 TGGAATGCGAGGATAGTACTCC 59.108 50.000 0.00 0.00 35.37 3.85
3098 4280 3.306156 GCATTCTCTATCCCGAGGTAACC 60.306 52.174 0.00 0.00 37.17 2.85
3099 4281 3.675348 TTCTCTATCCCGAGGTAACCA 57.325 47.619 0.00 0.00 37.17 3.67
3103 4285 1.111116 TATCCCGAGGTAACCAGCGG 61.111 60.000 7.41 7.41 41.25 5.52
3126 4314 0.583438 CGATGCATGATTCCGGTGAC 59.417 55.000 2.46 0.00 0.00 3.67
3131 4319 2.499693 TGCATGATTCCGGTGACTCTTA 59.500 45.455 0.00 0.00 0.00 2.10
3140 4328 2.882137 CCGGTGACTCTTATCCTCTCTC 59.118 54.545 0.00 0.00 0.00 3.20
3142 4330 4.202377 CCGGTGACTCTTATCCTCTCTCTA 60.202 50.000 0.00 0.00 0.00 2.43
3147 4335 7.174946 GGTGACTCTTATCCTCTCTCTATGAAG 59.825 44.444 0.00 0.00 0.00 3.02
3152 4340 8.574251 TCTTATCCTCTCTCTATGAAGTATGC 57.426 38.462 0.00 0.00 0.00 3.14
3153 4341 8.166726 TCTTATCCTCTCTCTATGAAGTATGCA 58.833 37.037 0.00 0.00 0.00 3.96
3156 4344 5.534278 TCCTCTCTCTATGAAGTATGCACTG 59.466 44.000 0.00 0.00 34.36 3.66
3158 4346 6.183360 CCTCTCTCTATGAAGTATGCACTGTT 60.183 42.308 0.00 0.00 34.36 3.16
3165 4368 9.317936 TCTATGAAGTATGCACTGTTAATCTTG 57.682 33.333 0.00 0.00 34.36 3.02
3187 4390 4.341806 TGTGAAATTCTGCAACAATGGAGT 59.658 37.500 0.00 0.00 44.64 3.85
3188 4391 5.163426 TGTGAAATTCTGCAACAATGGAGTT 60.163 36.000 0.00 0.00 44.64 3.01
3191 4394 1.909700 TCTGCAACAATGGAGTTCCC 58.090 50.000 0.00 0.00 44.64 3.97
3192 4395 0.523072 CTGCAACAATGGAGTTCCCG 59.477 55.000 0.00 0.00 39.92 5.14
3194 4397 0.893727 GCAACAATGGAGTTCCCGGT 60.894 55.000 0.00 0.00 37.93 5.28
3199 4402 1.553248 CAATGGAGTTCCCGGTCTGTA 59.447 52.381 0.00 0.00 37.93 2.74
3203 4406 2.291735 TGGAGTTCCCGGTCTGTATGTA 60.292 50.000 0.00 0.00 37.93 2.29
3208 4411 5.018809 AGTTCCCGGTCTGTATGTAAACTA 58.981 41.667 0.00 0.00 0.00 2.24
3215 4418 5.276868 CGGTCTGTATGTAAACTAATGCAGC 60.277 44.000 0.00 0.00 36.71 5.25
3216 4419 5.817816 GGTCTGTATGTAAACTAATGCAGCT 59.182 40.000 0.00 0.00 36.71 4.24
3217 4420 6.018669 GGTCTGTATGTAAACTAATGCAGCTC 60.019 42.308 0.00 0.00 36.71 4.09
3218 4421 6.758886 GTCTGTATGTAAACTAATGCAGCTCT 59.241 38.462 0.00 0.00 36.71 4.09
3219 4422 6.758416 TCTGTATGTAAACTAATGCAGCTCTG 59.242 38.462 0.00 0.00 36.71 3.35
3232 4435 2.508526 CAGCTCTGCCTAAAACTTGGT 58.491 47.619 0.00 0.00 0.00 3.67
3233 4436 3.674997 CAGCTCTGCCTAAAACTTGGTA 58.325 45.455 0.00 0.00 0.00 3.25
3234 4437 4.072131 CAGCTCTGCCTAAAACTTGGTAA 58.928 43.478 0.00 0.00 0.00 2.85
3235 4438 4.518970 CAGCTCTGCCTAAAACTTGGTAAA 59.481 41.667 0.00 0.00 0.00 2.01
3236 4439 5.009610 CAGCTCTGCCTAAAACTTGGTAAAA 59.990 40.000 0.00 0.00 0.00 1.52
3237 4440 5.009710 AGCTCTGCCTAAAACTTGGTAAAAC 59.990 40.000 0.00 0.00 0.00 2.43
3238 4441 5.221165 GCTCTGCCTAAAACTTGGTAAAACA 60.221 40.000 0.00 0.00 0.00 2.83
3239 4442 6.516693 GCTCTGCCTAAAACTTGGTAAAACAT 60.517 38.462 0.00 0.00 0.00 2.71
3240 4443 6.977213 TCTGCCTAAAACTTGGTAAAACATC 58.023 36.000 0.00 0.00 0.00 3.06
3241 4444 6.015772 TCTGCCTAAAACTTGGTAAAACATCC 60.016 38.462 0.00 0.00 0.00 3.51
3242 4445 5.598830 TGCCTAAAACTTGGTAAAACATCCA 59.401 36.000 0.00 0.00 0.00 3.41
3243 4446 6.156519 GCCTAAAACTTGGTAAAACATCCAG 58.843 40.000 0.00 0.00 35.05 3.86
3244 4447 6.239204 GCCTAAAACTTGGTAAAACATCCAGT 60.239 38.462 0.00 0.00 35.05 4.00
3245 4448 7.145323 CCTAAAACTTGGTAAAACATCCAGTG 58.855 38.462 0.00 0.00 35.05 3.66
3246 4449 4.584327 AACTTGGTAAAACATCCAGTGC 57.416 40.909 0.00 0.00 35.05 4.40
3247 4450 3.832527 ACTTGGTAAAACATCCAGTGCT 58.167 40.909 0.00 0.00 35.05 4.40
3248 4451 4.215109 ACTTGGTAAAACATCCAGTGCTT 58.785 39.130 0.00 0.00 35.05 3.91
3249 4452 4.278419 ACTTGGTAAAACATCCAGTGCTTC 59.722 41.667 0.00 0.00 35.05 3.86
3250 4453 4.098914 TGGTAAAACATCCAGTGCTTCT 57.901 40.909 0.00 0.00 0.00 2.85
3251 4454 3.820467 TGGTAAAACATCCAGTGCTTCTG 59.180 43.478 3.18 3.18 43.27 3.02
3252 4455 4.072131 GGTAAAACATCCAGTGCTTCTGA 58.928 43.478 10.22 0.00 46.27 3.27
3253 4456 4.518970 GGTAAAACATCCAGTGCTTCTGAA 59.481 41.667 10.22 0.00 46.27 3.02
3254 4457 4.843220 AAAACATCCAGTGCTTCTGAAG 57.157 40.909 13.02 13.02 46.27 3.02
3293 4546 1.000896 CCCAAGAAGCCATCCGGTT 60.001 57.895 0.00 0.00 33.99 4.44
3326 4591 1.164041 AAGTCGTTGGCTTCCGGTTG 61.164 55.000 0.00 0.00 0.00 3.77
3340 4605 1.489881 CGGTTGCTTTGCAGTTTGCC 61.490 55.000 0.00 0.00 44.23 4.52
3353 4618 3.088532 CAGTTTGCCCCACTTGCTATTA 58.911 45.455 0.00 0.00 0.00 0.98
3354 4619 3.129287 CAGTTTGCCCCACTTGCTATTAG 59.871 47.826 0.00 0.00 0.00 1.73
3355 4620 3.089284 GTTTGCCCCACTTGCTATTAGT 58.911 45.455 0.00 0.00 0.00 2.24
3356 4621 2.710096 TGCCCCACTTGCTATTAGTC 57.290 50.000 0.00 0.00 0.00 2.59
3357 4622 2.196595 TGCCCCACTTGCTATTAGTCT 58.803 47.619 0.00 0.00 0.00 3.24
3421 4691 7.309012 GGAATTCTAAAACCTCTTTAAACGCCT 60.309 37.037 5.23 0.00 0.00 5.52
3422 4692 8.625786 AATTCTAAAACCTCTTTAAACGCCTA 57.374 30.769 0.00 0.00 0.00 3.93
3463 4734 7.099764 AGCGATTCCCATGTAATATAAGAGTG 58.900 38.462 0.00 0.00 0.00 3.51
3498 4769 2.552315 ACTTGCACCATAGAAAACACCG 59.448 45.455 0.00 0.00 0.00 4.94
3499 4770 2.552599 TGCACCATAGAAAACACCGA 57.447 45.000 0.00 0.00 0.00 4.69
3562 4834 1.135315 CAAAGACCAATCGCAGCGG 59.865 57.895 16.42 0.32 0.00 5.52
3567 4839 3.853330 CCAATCGCAGCGGTCGTG 61.853 66.667 16.42 3.52 0.00 4.35
3580 4854 5.486706 CAGCGGTCGTGTATATAACAAAAC 58.513 41.667 0.00 0.00 40.63 2.43
3635 4909 2.203584 AGGAGCCAGGAGTTGAATCAT 58.796 47.619 0.00 0.00 0.00 2.45
3636 4910 2.579860 AGGAGCCAGGAGTTGAATCATT 59.420 45.455 0.00 0.00 0.00 2.57
3651 4925 1.138247 CATTTTGAGCTCCTGCGCC 59.862 57.895 12.15 0.00 45.42 6.53
3691 4971 1.909376 CAAAGATGCAGCATCACAGC 58.091 50.000 32.41 10.26 42.72 4.40
3698 4978 2.750637 AGCATCACAGCAGCCTGC 60.751 61.111 9.13 9.13 45.46 4.85
3709 4989 1.449246 CAGCCTGCTGTGCTAGACC 60.449 63.158 10.97 0.00 36.81 3.85
3735 5015 1.589196 GAGCGTGGTAGCATCGGAC 60.589 63.158 15.22 3.88 40.15 4.79
3977 5266 7.038445 TCAGTCATCTTCTCTTCTTTCATTCCT 60.038 37.037 0.00 0.00 0.00 3.36
3978 5267 7.278424 CAGTCATCTTCTCTTCTTTCATTCCTC 59.722 40.741 0.00 0.00 0.00 3.71
3979 5268 6.538381 GTCATCTTCTCTTCTTTCATTCCTCC 59.462 42.308 0.00 0.00 0.00 4.30
3980 5269 6.214208 TCATCTTCTCTTCTTTCATTCCTCCA 59.786 38.462 0.00 0.00 0.00 3.86
3982 5271 6.648192 TCTTCTCTTCTTTCATTCCTCCATC 58.352 40.000 0.00 0.00 0.00 3.51
3984 5273 7.621285 TCTTCTCTTCTTTCATTCCTCCATCTA 59.379 37.037 0.00 0.00 0.00 1.98
3985 5274 7.927683 TCTCTTCTTTCATTCCTCCATCTAT 57.072 36.000 0.00 0.00 0.00 1.98
3986 5275 7.733969 TCTCTTCTTTCATTCCTCCATCTATG 58.266 38.462 0.00 0.00 0.00 2.23
3988 5277 7.865820 TCTTCTTTCATTCCTCCATCTATGTT 58.134 34.615 0.00 0.00 0.00 2.71
3994 5283 5.072329 TCATTCCTCCATCTATGTTTCCTCC 59.928 44.000 0.00 0.00 0.00 4.30
3995 5284 3.318313 TCCTCCATCTATGTTTCCTCCC 58.682 50.000 0.00 0.00 0.00 4.30
3996 5285 3.051032 TCCTCCATCTATGTTTCCTCCCT 60.051 47.826 0.00 0.00 0.00 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.635663 CCGTTGATGCCCGAGACAAC 61.636 60.000 0.00 0.00 39.08 3.32
2 3 2.264480 CCGTTGATGCCCGAGACA 59.736 61.111 0.00 0.00 0.00 3.41
28 29 0.744414 ACATGGAAATGGCGACCTCG 60.744 55.000 0.00 0.00 43.27 4.63
29 30 0.734889 CACATGGAAATGGCGACCTC 59.265 55.000 0.00 0.00 0.00 3.85
30 31 0.680921 CCACATGGAAATGGCGACCT 60.681 55.000 0.00 0.00 37.39 3.85
31 32 0.965363 ACCACATGGAAATGGCGACC 60.965 55.000 4.53 0.00 39.84 4.79
32 33 0.451783 GACCACATGGAAATGGCGAC 59.548 55.000 4.53 0.00 39.84 5.19
33 34 1.024046 CGACCACATGGAAATGGCGA 61.024 55.000 4.53 0.00 39.84 5.54
34 35 1.429021 CGACCACATGGAAATGGCG 59.571 57.895 4.53 0.49 39.84 5.69
35 36 1.139520 GCGACCACATGGAAATGGC 59.860 57.895 4.53 0.00 39.84 4.40
36 37 0.452987 CAGCGACCACATGGAAATGG 59.547 55.000 4.53 0.00 42.13 3.16
37 38 0.179156 GCAGCGACCACATGGAAATG 60.179 55.000 4.53 0.00 38.94 2.32
38 39 0.322816 AGCAGCGACCACATGGAAAT 60.323 50.000 4.53 0.00 38.94 2.17
39 40 0.955428 GAGCAGCGACCACATGGAAA 60.955 55.000 4.53 0.00 38.94 3.13
40 41 1.375908 GAGCAGCGACCACATGGAA 60.376 57.895 4.53 0.00 38.94 3.53
41 42 2.265739 GAGCAGCGACCACATGGA 59.734 61.111 4.53 0.00 38.94 3.41
42 43 2.821366 GGAGCAGCGACCACATGG 60.821 66.667 0.00 0.00 42.17 3.66
43 44 1.642037 CTTGGAGCAGCGACCACATG 61.642 60.000 12.76 0.00 35.81 3.21
44 45 1.376424 CTTGGAGCAGCGACCACAT 60.376 57.895 12.76 0.00 35.81 3.21
45 46 2.031012 CTTGGAGCAGCGACCACA 59.969 61.111 12.76 5.53 35.81 4.17
46 47 3.426568 GCTTGGAGCAGCGACCAC 61.427 66.667 12.76 1.33 41.89 4.16
47 48 3.630013 AGCTTGGAGCAGCGACCA 61.630 61.111 9.75 9.75 45.56 4.02
48 49 3.123620 CAGCTTGGAGCAGCGACC 61.124 66.667 2.47 4.96 45.56 4.79
49 50 3.123620 CCAGCTTGGAGCAGCGAC 61.124 66.667 2.47 0.00 45.56 5.19
50 51 3.630013 ACCAGCTTGGAGCAGCGA 61.630 61.111 8.91 0.00 45.56 4.93
51 52 3.429141 CACCAGCTTGGAGCAGCG 61.429 66.667 8.91 0.00 45.56 5.18
52 53 3.060615 CCACCAGCTTGGAGCAGC 61.061 66.667 8.91 0.00 45.56 5.25
53 54 3.060615 GCCACCAGCTTGGAGCAG 61.061 66.667 8.71 0.00 45.56 4.24
82 83 3.842923 AGGATCCCGTGCTCAGCG 61.843 66.667 8.55 0.00 0.00 5.18
83 84 2.202987 CAGGATCCCGTGCTCAGC 60.203 66.667 8.55 0.00 0.00 4.26
103 104 4.162690 AGATCCCGGCCTCGTTGC 62.163 66.667 0.00 0.00 33.95 4.17
104 105 2.107141 GAGATCCCGGCCTCGTTG 59.893 66.667 0.00 0.00 33.95 4.10
105 106 3.155167 GGAGATCCCGGCCTCGTT 61.155 66.667 0.00 0.00 33.95 3.85
117 118 0.896019 CCGCCTACAGATCCGGAGAT 60.896 60.000 11.34 0.00 43.20 2.75
118 119 1.528542 CCGCCTACAGATCCGGAGA 60.529 63.158 11.34 0.00 43.20 3.71
119 120 1.528542 TCCGCCTACAGATCCGGAG 60.529 63.158 11.34 0.00 44.13 4.63
120 121 1.528542 CTCCGCCTACAGATCCGGA 60.529 63.158 6.61 6.61 46.50 5.14
121 122 2.565645 CCTCCGCCTACAGATCCGG 61.566 68.421 0.00 0.00 41.97 5.14
122 123 1.519751 CTCCTCCGCCTACAGATCCG 61.520 65.000 0.00 0.00 0.00 4.18
123 124 1.182385 CCTCCTCCGCCTACAGATCC 61.182 65.000 0.00 0.00 0.00 3.36
124 125 1.182385 CCCTCCTCCGCCTACAGATC 61.182 65.000 0.00 0.00 0.00 2.75
125 126 1.152440 CCCTCCTCCGCCTACAGAT 60.152 63.158 0.00 0.00 0.00 2.90
126 127 2.279073 CCCTCCTCCGCCTACAGA 59.721 66.667 0.00 0.00 0.00 3.41
127 128 2.664835 ATCCCCTCCTCCGCCTACAG 62.665 65.000 0.00 0.00 0.00 2.74
128 129 2.658321 GATCCCCTCCTCCGCCTACA 62.658 65.000 0.00 0.00 0.00 2.74
129 130 1.909287 GATCCCCTCCTCCGCCTAC 60.909 68.421 0.00 0.00 0.00 3.18
130 131 2.526628 GATCCCCTCCTCCGCCTA 59.473 66.667 0.00 0.00 0.00 3.93
131 132 4.565850 GGATCCCCTCCTCCGCCT 62.566 72.222 0.00 0.00 41.29 5.52
192 193 2.809601 CTCGAACCCTCAACGCCG 60.810 66.667 0.00 0.00 0.00 6.46
193 194 2.027625 CACTCGAACCCTCAACGCC 61.028 63.158 0.00 0.00 0.00 5.68
194 195 2.027625 CCACTCGAACCCTCAACGC 61.028 63.158 0.00 0.00 0.00 4.84
195 196 1.374252 CCCACTCGAACCCTCAACG 60.374 63.158 0.00 0.00 0.00 4.10
196 197 0.613777 ATCCCACTCGAACCCTCAAC 59.386 55.000 0.00 0.00 0.00 3.18
197 198 2.108168 CTATCCCACTCGAACCCTCAA 58.892 52.381 0.00 0.00 0.00 3.02
198 199 1.006758 ACTATCCCACTCGAACCCTCA 59.993 52.381 0.00 0.00 0.00 3.86
199 200 1.409427 CACTATCCCACTCGAACCCTC 59.591 57.143 0.00 0.00 0.00 4.30
200 201 1.486211 CACTATCCCACTCGAACCCT 58.514 55.000 0.00 0.00 0.00 4.34
201 202 0.464452 CCACTATCCCACTCGAACCC 59.536 60.000 0.00 0.00 0.00 4.11
202 203 1.134788 CACCACTATCCCACTCGAACC 60.135 57.143 0.00 0.00 0.00 3.62
203 204 1.134788 CCACCACTATCCCACTCGAAC 60.135 57.143 0.00 0.00 0.00 3.95
204 205 1.191535 CCACCACTATCCCACTCGAA 58.808 55.000 0.00 0.00 0.00 3.71
205 206 0.686441 CCCACCACTATCCCACTCGA 60.686 60.000 0.00 0.00 0.00 4.04
206 207 1.823295 CCCACCACTATCCCACTCG 59.177 63.158 0.00 0.00 0.00 4.18
207 208 1.527370 GCCCACCACTATCCCACTC 59.473 63.158 0.00 0.00 0.00 3.51
208 209 2.367202 CGCCCACCACTATCCCACT 61.367 63.158 0.00 0.00 0.00 4.00
209 210 2.189521 CGCCCACCACTATCCCAC 59.810 66.667 0.00 0.00 0.00 4.61
210 211 2.285069 ACGCCCACCACTATCCCA 60.285 61.111 0.00 0.00 0.00 4.37
211 212 1.906105 TTCACGCCCACCACTATCCC 61.906 60.000 0.00 0.00 0.00 3.85
212 213 0.462047 CTTCACGCCCACCACTATCC 60.462 60.000 0.00 0.00 0.00 2.59
213 214 0.462047 CCTTCACGCCCACCACTATC 60.462 60.000 0.00 0.00 0.00 2.08
214 215 0.907704 TCCTTCACGCCCACCACTAT 60.908 55.000 0.00 0.00 0.00 2.12
215 216 1.534476 TCCTTCACGCCCACCACTA 60.534 57.895 0.00 0.00 0.00 2.74
216 217 2.847234 TCCTTCACGCCCACCACT 60.847 61.111 0.00 0.00 0.00 4.00
217 218 2.358737 CTCCTTCACGCCCACCAC 60.359 66.667 0.00 0.00 0.00 4.16
218 219 3.636231 CCTCCTTCACGCCCACCA 61.636 66.667 0.00 0.00 0.00 4.17
219 220 2.804828 CTTCCTCCTTCACGCCCACC 62.805 65.000 0.00 0.00 0.00 4.61
220 221 1.376037 CTTCCTCCTTCACGCCCAC 60.376 63.158 0.00 0.00 0.00 4.61
221 222 2.592993 CCTTCCTCCTTCACGCCCA 61.593 63.158 0.00 0.00 0.00 5.36
222 223 2.245438 CTCCTTCCTCCTTCACGCCC 62.245 65.000 0.00 0.00 0.00 6.13
223 224 1.219393 CTCCTTCCTCCTTCACGCC 59.781 63.158 0.00 0.00 0.00 5.68
224 225 1.448717 GCTCCTTCCTCCTTCACGC 60.449 63.158 0.00 0.00 0.00 5.34
225 226 0.108424 CTGCTCCTTCCTCCTTCACG 60.108 60.000 0.00 0.00 0.00 4.35
226 227 1.206849 CTCTGCTCCTTCCTCCTTCAC 59.793 57.143 0.00 0.00 0.00 3.18
227 228 1.566211 CTCTGCTCCTTCCTCCTTCA 58.434 55.000 0.00 0.00 0.00 3.02
228 229 0.829990 CCTCTGCTCCTTCCTCCTTC 59.170 60.000 0.00 0.00 0.00 3.46
229 230 1.271127 GCCTCTGCTCCTTCCTCCTT 61.271 60.000 0.00 0.00 33.53 3.36
230 231 1.688884 GCCTCTGCTCCTTCCTCCT 60.689 63.158 0.00 0.00 33.53 3.69
231 232 1.557269 TTGCCTCTGCTCCTTCCTCC 61.557 60.000 0.00 0.00 38.71 4.30
232 233 0.326264 TTTGCCTCTGCTCCTTCCTC 59.674 55.000 0.00 0.00 38.71 3.71
233 234 0.773644 TTTTGCCTCTGCTCCTTCCT 59.226 50.000 0.00 0.00 38.71 3.36
234 235 0.884514 GTTTTGCCTCTGCTCCTTCC 59.115 55.000 0.00 0.00 38.71 3.46
235 236 1.538950 CAGTTTTGCCTCTGCTCCTTC 59.461 52.381 0.00 0.00 38.71 3.46
236 237 1.133668 ACAGTTTTGCCTCTGCTCCTT 60.134 47.619 0.00 0.00 38.71 3.36
237 238 0.475906 ACAGTTTTGCCTCTGCTCCT 59.524 50.000 0.00 0.00 38.71 3.69
238 239 1.268079 GAACAGTTTTGCCTCTGCTCC 59.732 52.381 0.00 0.00 38.71 4.70
239 240 1.069636 CGAACAGTTTTGCCTCTGCTC 60.070 52.381 0.00 0.00 38.71 4.26
240 241 0.947244 CGAACAGTTTTGCCTCTGCT 59.053 50.000 0.00 0.00 38.71 4.24
241 242 0.944386 TCGAACAGTTTTGCCTCTGC 59.056 50.000 0.00 0.00 35.37 4.26
242 243 2.478134 CTCTCGAACAGTTTTGCCTCTG 59.522 50.000 0.00 0.00 37.65 3.35
243 244 2.365617 TCTCTCGAACAGTTTTGCCTCT 59.634 45.455 0.00 0.00 0.00 3.69
244 245 2.734079 CTCTCTCGAACAGTTTTGCCTC 59.266 50.000 0.00 0.00 0.00 4.70
245 246 2.365617 TCTCTCTCGAACAGTTTTGCCT 59.634 45.455 0.00 0.00 0.00 4.75
246 247 2.734079 CTCTCTCTCGAACAGTTTTGCC 59.266 50.000 0.00 0.00 0.00 4.52
247 248 2.734079 CCTCTCTCTCGAACAGTTTTGC 59.266 50.000 0.00 0.00 0.00 3.68
248 249 3.321497 CCCTCTCTCTCGAACAGTTTTG 58.679 50.000 0.00 0.00 0.00 2.44
249 250 2.289133 GCCCTCTCTCTCGAACAGTTTT 60.289 50.000 0.00 0.00 0.00 2.43
250 251 1.273886 GCCCTCTCTCTCGAACAGTTT 59.726 52.381 0.00 0.00 0.00 2.66
251 252 0.892063 GCCCTCTCTCTCGAACAGTT 59.108 55.000 0.00 0.00 0.00 3.16
252 253 0.039035 AGCCCTCTCTCTCGAACAGT 59.961 55.000 0.00 0.00 0.00 3.55
253 254 0.455410 CAGCCCTCTCTCTCGAACAG 59.545 60.000 0.00 0.00 0.00 3.16
254 255 1.599606 GCAGCCCTCTCTCTCGAACA 61.600 60.000 0.00 0.00 0.00 3.18
255 256 1.140804 GCAGCCCTCTCTCTCGAAC 59.859 63.158 0.00 0.00 0.00 3.95
256 257 1.000270 AGCAGCCCTCTCTCTCGAA 60.000 57.895 0.00 0.00 0.00 3.71
257 258 1.752310 CAGCAGCCCTCTCTCTCGA 60.752 63.158 0.00 0.00 0.00 4.04
258 259 2.784356 CCAGCAGCCCTCTCTCTCG 61.784 68.421 0.00 0.00 0.00 4.04
259 260 3.092780 GCCAGCAGCCCTCTCTCTC 62.093 68.421 0.00 0.00 34.35 3.20
260 261 3.082701 GCCAGCAGCCCTCTCTCT 61.083 66.667 0.00 0.00 34.35 3.10
261 262 2.668120 AAGCCAGCAGCCCTCTCTC 61.668 63.158 0.00 0.00 45.47 3.20
262 263 2.610233 AAGCCAGCAGCCCTCTCT 60.610 61.111 0.00 0.00 45.47 3.10
263 264 2.438075 CAAGCCAGCAGCCCTCTC 60.438 66.667 0.00 0.00 45.47 3.20
264 265 2.761304 GAACAAGCCAGCAGCCCTCT 62.761 60.000 0.00 0.00 45.47 3.69
265 266 2.282745 AACAAGCCAGCAGCCCTC 60.283 61.111 0.00 0.00 45.47 4.30
266 267 2.282745 GAACAAGCCAGCAGCCCT 60.283 61.111 0.00 0.00 45.47 5.19
267 268 2.282745 AGAACAAGCCAGCAGCCC 60.283 61.111 0.00 0.00 45.47 5.19
268 269 1.900498 ACAGAACAAGCCAGCAGCC 60.900 57.895 0.00 0.00 45.47 4.85
269 270 1.285023 CACAGAACAAGCCAGCAGC 59.715 57.895 0.00 0.00 44.25 5.25
270 271 1.285023 GCACAGAACAAGCCAGCAG 59.715 57.895 0.00 0.00 0.00 4.24
271 272 2.545596 CGCACAGAACAAGCCAGCA 61.546 57.895 0.00 0.00 0.00 4.41
272 273 2.253452 CGCACAGAACAAGCCAGC 59.747 61.111 0.00 0.00 0.00 4.85
273 274 2.253452 GCGCACAGAACAAGCCAG 59.747 61.111 0.30 0.00 0.00 4.85
274 275 3.286751 GGCGCACAGAACAAGCCA 61.287 61.111 10.83 0.00 46.48 4.75
276 277 0.730494 GATTGGCGCACAGAACAAGC 60.730 55.000 10.83 1.44 0.00 4.01
277 278 0.109597 GGATTGGCGCACAGAACAAG 60.110 55.000 10.83 0.00 0.00 3.16
278 279 0.821301 TGGATTGGCGCACAGAACAA 60.821 50.000 10.83 2.88 0.00 2.83
279 280 1.228094 TGGATTGGCGCACAGAACA 60.228 52.632 10.83 0.00 0.00 3.18
280 281 1.503542 CTGGATTGGCGCACAGAAC 59.496 57.895 10.83 0.00 32.86 3.01
281 282 2.334946 GCTGGATTGGCGCACAGAA 61.335 57.895 10.83 0.00 32.86 3.02
282 283 2.747460 GCTGGATTGGCGCACAGA 60.747 61.111 10.83 0.00 32.86 3.41
283 284 3.818787 GGCTGGATTGGCGCACAG 61.819 66.667 10.83 10.18 0.00 3.66
287 288 3.599704 GATGGGCTGGATTGGCGC 61.600 66.667 0.00 0.00 41.90 6.53
288 289 2.908940 GGATGGGCTGGATTGGCG 60.909 66.667 0.00 0.00 0.00 5.69
289 290 2.522680 GGGATGGGCTGGATTGGC 60.523 66.667 0.00 0.00 0.00 4.52
290 291 0.541296 GATGGGATGGGCTGGATTGG 60.541 60.000 0.00 0.00 0.00 3.16
291 292 0.541296 GGATGGGATGGGCTGGATTG 60.541 60.000 0.00 0.00 0.00 2.67
292 293 1.733387 GGGATGGGATGGGCTGGATT 61.733 60.000 0.00 0.00 0.00 3.01
293 294 2.165656 GGGATGGGATGGGCTGGAT 61.166 63.158 0.00 0.00 0.00 3.41
294 295 2.778278 GGGATGGGATGGGCTGGA 60.778 66.667 0.00 0.00 0.00 3.86
295 296 3.105248 TGGGATGGGATGGGCTGG 61.105 66.667 0.00 0.00 0.00 4.85
296 297 2.519441 CTGGGATGGGATGGGCTG 59.481 66.667 0.00 0.00 0.00 4.85
297 298 3.505773 GCTGGGATGGGATGGGCT 61.506 66.667 0.00 0.00 0.00 5.19
298 299 4.610526 GGCTGGGATGGGATGGGC 62.611 72.222 0.00 0.00 0.00 5.36
460 463 3.423154 GGGCGCGACTTCAGTTGG 61.423 66.667 13.91 0.00 0.00 3.77
587 602 0.652592 CTGTTAGCTTCCATTCGCCG 59.347 55.000 0.00 0.00 0.00 6.46
745 764 4.828829 ACGATACAACAACTCTTAAGGGG 58.171 43.478 7.40 1.22 0.00 4.79
753 772 3.318017 ACTGCAGACGATACAACAACTC 58.682 45.455 23.35 0.00 0.00 3.01
771 793 6.995511 TTAATTTACCAAAGATCGGGACTG 57.004 37.500 7.92 0.00 0.00 3.51
817 846 6.940867 AGTAAATCCTTTCAGTCCCTTTGTAC 59.059 38.462 0.00 0.00 0.00 2.90
890 924 5.359194 ACACAAGATACAACTATCCAGGG 57.641 43.478 0.00 0.00 30.40 4.45
978 1018 3.132925 CCCCAACAAGAATTTGCACTTG 58.867 45.455 11.97 11.97 45.85 3.16
1050 1090 6.379988 AGACATACTCTTCTTCTTCTTCCTCC 59.620 42.308 0.00 0.00 0.00 4.30
1161 1201 3.758554 CCTTTTGTACCAGTAAGCTGCAT 59.241 43.478 1.02 0.00 41.26 3.96
1235 1277 7.816640 TCAATATGACAAAAGTGCTTAAGGAC 58.183 34.615 18.57 18.57 36.57 3.85
1345 1399 5.067674 ACTGCTTCATCTTAGTGCAAACAAA 59.932 36.000 0.00 0.00 33.07 2.83
1366 1429 9.416794 CTTAGATAATCAGCACATAACCTACTG 57.583 37.037 0.00 0.00 0.00 2.74
1367 1430 9.368416 TCTTAGATAATCAGCACATAACCTACT 57.632 33.333 0.00 0.00 0.00 2.57
1368 1431 9.632807 CTCTTAGATAATCAGCACATAACCTAC 57.367 37.037 0.00 0.00 0.00 3.18
1369 1432 9.588096 TCTCTTAGATAATCAGCACATAACCTA 57.412 33.333 0.00 0.00 0.00 3.08
1370 1433 8.484214 TCTCTTAGATAATCAGCACATAACCT 57.516 34.615 0.00 0.00 0.00 3.50
1371 1434 8.364142 ACTCTCTTAGATAATCAGCACATAACC 58.636 37.037 0.00 0.00 0.00 2.85
1372 1435 9.757227 AACTCTCTTAGATAATCAGCACATAAC 57.243 33.333 0.00 0.00 0.00 1.89
1415 1478 3.330701 AGCCCTTTCATGTAAGAAGTGGA 59.669 43.478 13.18 0.00 0.00 4.02
1534 1597 4.945246 ACGAAACAGACATAGACACAACT 58.055 39.130 0.00 0.00 0.00 3.16
1570 1633 6.019801 CACTAAACGCATAACTACCTAGCTTG 60.020 42.308 0.00 0.00 0.00 4.01
1573 1636 5.585390 TCACTAAACGCATAACTACCTAGC 58.415 41.667 0.00 0.00 0.00 3.42
1576 1639 5.163581 ACGATCACTAAACGCATAACTACCT 60.164 40.000 0.00 0.00 0.00 3.08
1598 1663 3.189287 AGCTCAAATAAGCCAACAAGACG 59.811 43.478 0.00 0.00 43.56 4.18
1614 1680 5.070001 AGCAAAATTGTACAGGTAGCTCAA 58.930 37.500 0.00 0.00 0.00 3.02
1784 1851 7.790782 AAAAGAATAATGCCCCTTAACTTGA 57.209 32.000 0.00 0.00 0.00 3.02
1878 1954 4.768968 AGATGGCAGCCATATAAAACATCC 59.231 41.667 27.75 10.44 45.26 3.51
2035 3159 5.192927 TGGAGGCGATCAAACTTTATTCAT 58.807 37.500 0.00 0.00 0.00 2.57
2062 3186 3.232720 TGAACCCCAAGTAAAGTTCCC 57.767 47.619 0.00 0.00 38.24 3.97
2096 3220 8.992349 CCAGATAAATGGGTGTATCCAGATATA 58.008 37.037 0.00 0.00 40.56 0.86
2135 3259 7.786030 TCCAGACAGTCTCCTATTATGAAAAG 58.214 38.462 0.00 0.00 0.00 2.27
2206 3332 9.628500 AACCTTAGTTCCATCTATTTATTCACC 57.372 33.333 0.00 0.00 0.00 4.02
2251 3377 7.129109 TGTTAGTGCTAAAGCTATCACAAAC 57.871 36.000 3.26 0.25 42.66 2.93
2492 3628 0.807496 GCAGAGGGATGCAAACACTC 59.193 55.000 15.69 15.69 45.77 3.51
2560 3696 6.056884 TCAGGTTAATGTACAAAACTCGGTT 58.943 36.000 18.53 2.74 0.00 4.44
2570 3706 5.722441 TCACAGGGTATCAGGTTAATGTACA 59.278 40.000 0.00 0.00 0.00 2.90
2607 3743 3.441572 AGCATGGAAATCTGAAGGAAACG 59.558 43.478 0.00 0.00 0.00 3.60
2648 3786 3.754965 ACATGCTATGTGTGAACAAGGT 58.245 40.909 0.00 0.00 43.01 3.50
2649 3787 4.771590 AACATGCTATGTGTGAACAAGG 57.228 40.909 0.00 0.00 44.07 3.61
2670 3812 4.939439 GCCTTCCCGACAAGTTAGATAAAA 59.061 41.667 0.00 0.00 0.00 1.52
2732 3874 4.752879 TTGCACTAGGGTCGGCGC 62.753 66.667 0.00 0.00 0.00 6.53
2733 3875 1.024579 AAATTGCACTAGGGTCGGCG 61.025 55.000 0.00 0.00 0.00 6.46
2735 3877 3.754323 TGTAAAAATTGCACTAGGGTCGG 59.246 43.478 0.00 0.00 0.00 4.79
2737 3879 5.335661 CCACTGTAAAAATTGCACTAGGGTC 60.336 44.000 0.00 0.00 0.00 4.46
2738 3880 4.522789 CCACTGTAAAAATTGCACTAGGGT 59.477 41.667 0.00 0.00 0.00 4.34
2744 3886 7.656707 AATGAATCCACTGTAAAAATTGCAC 57.343 32.000 0.00 0.00 0.00 4.57
2748 3890 8.907222 AAGCAAATGAATCCACTGTAAAAATT 57.093 26.923 0.00 0.00 0.00 1.82
2787 3929 1.340405 TGGAGCATCTGGAAAGGAAGC 60.340 52.381 0.00 0.00 33.73 3.86
2796 3938 0.890683 GGTTTTGGTGGAGCATCTGG 59.109 55.000 0.00 0.00 33.73 3.86
2813 3955 1.599047 CGGCTCTCCATGAACAGGT 59.401 57.895 0.00 0.00 0.00 4.00
2816 3958 2.268920 GCCGGCTCTCCATGAACA 59.731 61.111 22.15 0.00 0.00 3.18
2886 4028 2.040278 TCAGATGTTTCACCTCCTTGGG 59.960 50.000 0.00 0.00 41.11 4.12
2975 4117 4.351111 AGTCAAAACTCCTTGTCCCTGTAT 59.649 41.667 0.00 0.00 0.00 2.29
3007 4149 1.580845 AAGGATCGCTTGCTGTGTGC 61.581 55.000 0.00 0.00 43.25 4.57
3008 4150 0.877071 AAAGGATCGCTTGCTGTGTG 59.123 50.000 0.00 0.00 0.00 3.82
3009 4151 0.877071 CAAAGGATCGCTTGCTGTGT 59.123 50.000 0.00 0.00 0.00 3.72
3020 4194 2.428530 GCATTCCAAGGGTCAAAGGATC 59.571 50.000 0.00 0.00 0.00 3.36
3052 4226 8.150945 TGCTAGTGGCTAATTAAGATTAAGGAG 58.849 37.037 0.00 0.00 42.39 3.69
3053 4227 8.029782 TGCTAGTGGCTAATTAAGATTAAGGA 57.970 34.615 0.00 0.00 42.39 3.36
3054 4228 8.854614 ATGCTAGTGGCTAATTAAGATTAAGG 57.145 34.615 0.00 0.00 42.39 2.69
3069 4251 2.353208 CGGGATAGAGAATGCTAGTGGC 60.353 54.545 0.00 0.00 42.22 5.01
3098 4280 2.055310 ATCATGCATCGCAACCGCTG 62.055 55.000 0.00 0.00 43.62 5.18
3099 4281 1.378882 AATCATGCATCGCAACCGCT 61.379 50.000 0.00 0.00 43.62 5.52
3103 4285 0.317269 CCGGAATCATGCATCGCAAC 60.317 55.000 0.00 0.00 43.62 4.17
3126 4314 8.677300 GCATACTTCATAGAGAGAGGATAAGAG 58.323 40.741 0.00 0.00 0.00 2.85
3131 4319 6.209192 CAGTGCATACTTCATAGAGAGAGGAT 59.791 42.308 0.00 0.00 34.07 3.24
3140 4328 9.102757 ACAAGATTAACAGTGCATACTTCATAG 57.897 33.333 0.00 0.00 34.07 2.23
3142 4330 7.607607 TCACAAGATTAACAGTGCATACTTCAT 59.392 33.333 0.00 0.00 34.07 2.57
3147 4335 8.970691 AATTTCACAAGATTAACAGTGCATAC 57.029 30.769 0.00 0.00 32.25 2.39
3152 4340 7.140705 TGCAGAATTTCACAAGATTAACAGTG 58.859 34.615 0.00 0.00 0.00 3.66
3153 4341 7.275888 TGCAGAATTTCACAAGATTAACAGT 57.724 32.000 0.00 0.00 0.00 3.55
3156 4344 7.928908 TGTTGCAGAATTTCACAAGATTAAC 57.071 32.000 0.00 0.00 0.00 2.01
3158 4346 7.599621 CCATTGTTGCAGAATTTCACAAGATTA 59.400 33.333 4.40 0.00 0.00 1.75
3165 4368 4.874970 ACTCCATTGTTGCAGAATTTCAC 58.125 39.130 0.00 0.00 0.00 3.18
3187 4390 5.999205 TTAGTTTACATACAGACCGGGAA 57.001 39.130 6.32 0.00 0.00 3.97
3188 4391 5.682990 GCATTAGTTTACATACAGACCGGGA 60.683 44.000 6.32 0.00 0.00 5.14
3191 4394 5.276868 GCTGCATTAGTTTACATACAGACCG 60.277 44.000 0.00 0.00 0.00 4.79
3192 4395 5.817816 AGCTGCATTAGTTTACATACAGACC 59.182 40.000 1.02 0.00 0.00 3.85
3194 4397 6.758416 CAGAGCTGCATTAGTTTACATACAGA 59.242 38.462 1.02 0.00 0.00 3.41
3215 4418 6.385649 TGTTTTACCAAGTTTTAGGCAGAG 57.614 37.500 0.00 0.00 0.00 3.35
3216 4419 6.015772 GGATGTTTTACCAAGTTTTAGGCAGA 60.016 38.462 0.00 0.00 0.00 4.26
3217 4420 6.156519 GGATGTTTTACCAAGTTTTAGGCAG 58.843 40.000 0.00 0.00 0.00 4.85
3218 4421 5.598830 TGGATGTTTTACCAAGTTTTAGGCA 59.401 36.000 0.00 0.00 32.93 4.75
3219 4422 6.091718 TGGATGTTTTACCAAGTTTTAGGC 57.908 37.500 0.00 0.00 32.93 3.93
3220 4423 7.145323 CACTGGATGTTTTACCAAGTTTTAGG 58.855 38.462 0.00 0.00 35.67 2.69
3221 4424 6.640907 GCACTGGATGTTTTACCAAGTTTTAG 59.359 38.462 0.00 0.00 35.67 1.85
3222 4425 6.322712 AGCACTGGATGTTTTACCAAGTTTTA 59.677 34.615 0.00 0.00 35.67 1.52
3223 4426 5.128663 AGCACTGGATGTTTTACCAAGTTTT 59.871 36.000 0.00 0.00 35.67 2.43
3224 4427 4.649218 AGCACTGGATGTTTTACCAAGTTT 59.351 37.500 0.00 0.00 35.67 2.66
3225 4428 4.215109 AGCACTGGATGTTTTACCAAGTT 58.785 39.130 0.00 0.00 35.67 2.66
3226 4429 3.832527 AGCACTGGATGTTTTACCAAGT 58.167 40.909 0.00 0.00 35.67 3.16
3227 4430 4.520492 AGAAGCACTGGATGTTTTACCAAG 59.480 41.667 0.00 0.00 35.67 3.61
3228 4431 4.278170 CAGAAGCACTGGATGTTTTACCAA 59.722 41.667 3.48 0.00 42.39 3.67
3229 4432 3.820467 CAGAAGCACTGGATGTTTTACCA 59.180 43.478 3.48 0.00 42.39 3.25
3230 4433 4.072131 TCAGAAGCACTGGATGTTTTACC 58.928 43.478 10.23 0.00 45.76 2.85
3231 4434 5.689383 TTCAGAAGCACTGGATGTTTTAC 57.311 39.130 10.23 0.00 45.76 2.01
3232 4435 5.947228 CTTCAGAAGCACTGGATGTTTTA 57.053 39.130 10.23 0.00 45.76 1.52
3233 4436 4.843220 CTTCAGAAGCACTGGATGTTTT 57.157 40.909 10.23 0.00 45.76 2.43
3246 4449 1.093159 GCACTGGATGGCTTCAGAAG 58.907 55.000 5.72 5.72 35.20 2.85
3247 4450 0.694771 AGCACTGGATGGCTTCAGAA 59.305 50.000 2.60 0.00 36.92 3.02
3248 4451 0.694771 AAGCACTGGATGGCTTCAGA 59.305 50.000 2.60 0.00 46.82 3.27
3249 4452 3.261250 AAGCACTGGATGGCTTCAG 57.739 52.632 2.60 2.21 46.82 3.02
3272 4525 1.452108 CGGATGGCTTCTTGGGTCC 60.452 63.158 0.07 0.00 0.00 4.46
3293 4546 5.007332 GCCAACGACTTTTTCTAACTCAAGA 59.993 40.000 0.00 0.00 0.00 3.02
3340 4605 6.999272 TCTAGACTAGACTAATAGCAAGTGGG 59.001 42.308 8.17 0.00 0.00 4.61
3355 4620 3.607741 CGTGAGGTTGGTCTAGACTAGA 58.392 50.000 21.88 8.17 0.00 2.43
3356 4621 2.097791 GCGTGAGGTTGGTCTAGACTAG 59.902 54.545 21.88 2.81 0.00 2.57
3357 4622 2.089980 GCGTGAGGTTGGTCTAGACTA 58.910 52.381 21.88 14.08 0.00 2.59
3421 4691 3.483421 TCGCTATCAAGATTCCGGTCTA 58.517 45.455 0.00 0.00 0.00 2.59
3422 4692 2.307768 TCGCTATCAAGATTCCGGTCT 58.692 47.619 0.00 0.00 0.00 3.85
3511 4782 2.738521 CCACGTTCACGGCAGGAG 60.739 66.667 4.07 0.00 44.95 3.69
3562 4834 8.889849 ATGCTTTGTTTTGTTATATACACGAC 57.110 30.769 0.00 0.00 36.21 4.34
3580 4854 6.293626 GCTTGGGTCTATGTATGTATGCTTTG 60.294 42.308 0.00 0.00 0.00 2.77
3635 4909 3.049674 CGGCGCAGGAGCTCAAAA 61.050 61.111 17.19 0.00 39.10 2.44
3651 4925 2.649516 CTTCTCTTCAGATCTAGCGCG 58.350 52.381 0.00 0.00 0.00 6.86
3698 4978 1.895798 TCAAGGACTGGTCTAGCACAG 59.104 52.381 10.74 10.74 40.48 3.66
3709 4989 0.737715 GCTACCACGCTCAAGGACTG 60.738 60.000 0.00 0.00 0.00 3.51
3735 5015 0.823769 TCATCCCCGTCATCTCCGAG 60.824 60.000 0.00 0.00 0.00 4.63



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.