Multiple sequence alignment - TraesCS2A01G373100
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2A01G373100 | chr2A | 100.000 | 3997 | 0 | 0 | 1 | 3997 | 615519370 | 615523366 | 0.000000e+00 | 7382 |
1 | TraesCS2A01G373100 | chr2D | 92.035 | 2737 | 132 | 32 | 301 | 2997 | 473584314 | 473587004 | 0.000000e+00 | 3768 |
2 | TraesCS2A01G373100 | chr2D | 90.704 | 710 | 38 | 18 | 3295 | 3994 | 473587296 | 473587987 | 0.000000e+00 | 920 |
3 | TraesCS2A01G373100 | chr2D | 78.261 | 207 | 21 | 9 | 2993 | 3185 | 473587034 | 473587230 | 1.170000e-20 | 111 |
4 | TraesCS2A01G373100 | chr2B | 92.693 | 2436 | 118 | 22 | 296 | 2683 | 553975752 | 553978175 | 0.000000e+00 | 3458 |
5 | TraesCS2A01G373100 | chr2B | 89.630 | 675 | 31 | 11 | 3316 | 3977 | 553978757 | 553979405 | 0.000000e+00 | 822 |
6 | TraesCS2A01G373100 | chr2B | 94.570 | 221 | 12 | 0 | 2777 | 2997 | 553978174 | 553978394 | 3.820000e-90 | 342 |
7 | TraesCS2A01G373100 | chrUn | 93.206 | 942 | 34 | 9 | 1002 | 1929 | 75463745 | 75462820 | 0.000000e+00 | 1358 |
8 | TraesCS2A01G373100 | chrUn | 88.525 | 1098 | 80 | 18 | 1917 | 2997 | 75461788 | 75460720 | 0.000000e+00 | 1288 |
9 | TraesCS2A01G373100 | chrUn | 90.496 | 705 | 33 | 13 | 282 | 973 | 75464427 | 75463744 | 0.000000e+00 | 900 |
10 | TraesCS2A01G373100 | chr7B | 91.438 | 292 | 24 | 1 | 1 | 291 | 736633227 | 736632936 | 2.240000e-107 | 399 |
11 | TraesCS2A01G373100 | chr4B | 90.411 | 292 | 26 | 2 | 1 | 291 | 608664384 | 608664094 | 2.250000e-102 | 383 |
12 | TraesCS2A01G373100 | chr4D | 93.333 | 165 | 11 | 0 | 2 | 166 | 73962669 | 73962833 | 1.110000e-60 | 244 |
13 | TraesCS2A01G373100 | chr4A | 81.667 | 300 | 42 | 12 | 3 | 296 | 91229412 | 91229704 | 1.860000e-58 | 237 |
14 | TraesCS2A01G373100 | chr3D | 73.971 | 680 | 110 | 42 | 900 | 1562 | 570035912 | 570036541 | 3.130000e-51 | 213 |
15 | TraesCS2A01G373100 | chr3A | 86.486 | 185 | 24 | 1 | 32 | 215 | 16591740 | 16591556 | 6.770000e-48 | 202 |
16 | TraesCS2A01G373100 | chr3A | 80.851 | 235 | 30 | 9 | 980 | 1207 | 702574617 | 702574843 | 1.910000e-38 | 171 |
17 | TraesCS2A01G373100 | chr3A | 79.518 | 166 | 20 | 10 | 1234 | 1391 | 702576172 | 702576331 | 5.460000e-19 | 106 |
18 | TraesCS2A01G373100 | chr3B | 81.481 | 243 | 42 | 2 | 967 | 1207 | 756671570 | 756671811 | 3.150000e-46 | 196 |
19 | TraesCS2A01G373100 | chr7A | 81.250 | 224 | 39 | 2 | 5 | 227 | 100073833 | 100073612 | 1.140000e-40 | 178 |
20 | TraesCS2A01G373100 | chr7D | 85.629 | 167 | 24 | 0 | 44 | 210 | 66097371 | 66097205 | 4.110000e-40 | 176 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2A01G373100 | chr2A | 615519370 | 615523366 | 3996 | False | 7382.000000 | 7382 | 100.000000 | 1 | 3997 | 1 | chr2A.!!$F1 | 3996 |
1 | TraesCS2A01G373100 | chr2D | 473584314 | 473587987 | 3673 | False | 1599.666667 | 3768 | 87.000000 | 301 | 3994 | 3 | chr2D.!!$F1 | 3693 |
2 | TraesCS2A01G373100 | chr2B | 553975752 | 553979405 | 3653 | False | 1540.666667 | 3458 | 92.297667 | 296 | 3977 | 3 | chr2B.!!$F1 | 3681 |
3 | TraesCS2A01G373100 | chrUn | 75460720 | 75464427 | 3707 | True | 1182.000000 | 1358 | 90.742333 | 282 | 2997 | 3 | chrUn.!!$R1 | 2715 |
4 | TraesCS2A01G373100 | chr3D | 570035912 | 570036541 | 629 | False | 213.000000 | 213 | 73.971000 | 900 | 1562 | 1 | chr3D.!!$F1 | 662 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
271 | 272 | 0.039035 | ACTGTTCGAGAGAGAGGGCT | 59.961 | 55.0 | 0.82 | 0.0 | 43.69 | 5.19 | F |
296 | 297 | 0.109597 | CTTGTTCTGTGCGCCAATCC | 60.110 | 55.0 | 4.18 | 0.0 | 0.00 | 3.01 | F |
1050 | 1090 | 0.325110 | TTGCTGAGGAGGAGGAGGAG | 60.325 | 60.0 | 0.00 | 0.0 | 0.00 | 3.69 | F |
1573 | 1636 | 0.914551 | CGTAGATTCACGGCGACAAG | 59.085 | 55.0 | 16.62 | 0.0 | 38.26 | 3.16 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1598 | 1663 | 3.189287 | AGCTCAAATAAGCCAACAAGACG | 59.811 | 43.478 | 0.00 | 0.00 | 43.56 | 4.18 | R |
2062 | 3186 | 3.232720 | TGAACCCCAAGTAAAGTTCCC | 57.767 | 47.619 | 0.00 | 0.00 | 38.24 | 3.97 | R |
2492 | 3628 | 0.807496 | GCAGAGGGATGCAAACACTC | 59.193 | 55.000 | 15.69 | 15.69 | 45.77 | 3.51 | R |
3103 | 4285 | 0.317269 | CCGGAATCATGCATCGCAAC | 60.317 | 55.000 | 0.00 | 0.00 | 43.62 | 4.17 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
18 | 19 | 1.787847 | GTTGTCTCGGGCATCAACG | 59.212 | 57.895 | 3.07 | 0.00 | 32.56 | 4.10 |
19 | 20 | 1.375396 | TTGTCTCGGGCATCAACGG | 60.375 | 57.895 | 0.00 | 0.00 | 0.00 | 4.44 |
20 | 21 | 3.195698 | GTCTCGGGCATCAACGGC | 61.196 | 66.667 | 0.00 | 0.00 | 0.00 | 5.68 |
21 | 22 | 4.812476 | TCTCGGGCATCAACGGCG | 62.812 | 66.667 | 4.80 | 4.80 | 0.00 | 6.46 |
45 | 46 | 4.540153 | CGAGGTCGCCATTTCCAT | 57.460 | 55.556 | 0.00 | 0.00 | 0.00 | 3.41 |
46 | 47 | 2.016961 | CGAGGTCGCCATTTCCATG | 58.983 | 57.895 | 0.00 | 0.00 | 0.00 | 3.66 |
47 | 48 | 0.744414 | CGAGGTCGCCATTTCCATGT | 60.744 | 55.000 | 0.00 | 0.00 | 0.00 | 3.21 |
48 | 49 | 0.734889 | GAGGTCGCCATTTCCATGTG | 59.265 | 55.000 | 0.00 | 0.00 | 0.00 | 3.21 |
49 | 50 | 0.680921 | AGGTCGCCATTTCCATGTGG | 60.681 | 55.000 | 0.00 | 0.00 | 38.55 | 4.17 |
50 | 51 | 0.965363 | GGTCGCCATTTCCATGTGGT | 60.965 | 55.000 | 0.00 | 0.00 | 37.81 | 4.16 |
51 | 52 | 0.451783 | GTCGCCATTTCCATGTGGTC | 59.548 | 55.000 | 0.00 | 0.00 | 37.81 | 4.02 |
52 | 53 | 1.024046 | TCGCCATTTCCATGTGGTCG | 61.024 | 55.000 | 0.00 | 6.34 | 37.81 | 4.79 |
53 | 54 | 1.139520 | GCCATTTCCATGTGGTCGC | 59.860 | 57.895 | 0.00 | 0.00 | 37.81 | 5.19 |
54 | 55 | 1.315257 | GCCATTTCCATGTGGTCGCT | 61.315 | 55.000 | 0.00 | 0.00 | 37.81 | 4.93 |
55 | 56 | 0.452987 | CCATTTCCATGTGGTCGCTG | 59.547 | 55.000 | 0.00 | 0.00 | 36.34 | 5.18 |
56 | 57 | 0.179156 | CATTTCCATGTGGTCGCTGC | 60.179 | 55.000 | 0.00 | 0.00 | 36.34 | 5.25 |
57 | 58 | 0.322816 | ATTTCCATGTGGTCGCTGCT | 60.323 | 50.000 | 0.00 | 0.00 | 36.34 | 4.24 |
58 | 59 | 0.955428 | TTTCCATGTGGTCGCTGCTC | 60.955 | 55.000 | 0.00 | 0.00 | 36.34 | 4.26 |
59 | 60 | 2.803155 | TTCCATGTGGTCGCTGCTCC | 62.803 | 60.000 | 0.00 | 0.77 | 36.34 | 4.70 |
60 | 61 | 2.046988 | CATGTGGTCGCTGCTCCA | 60.047 | 61.111 | 8.86 | 8.86 | 0.00 | 3.86 |
61 | 62 | 1.672030 | CATGTGGTCGCTGCTCCAA | 60.672 | 57.895 | 13.33 | 6.56 | 35.38 | 3.53 |
62 | 63 | 1.376424 | ATGTGGTCGCTGCTCCAAG | 60.376 | 57.895 | 13.33 | 0.00 | 35.38 | 3.61 |
63 | 64 | 3.426568 | GTGGTCGCTGCTCCAAGC | 61.427 | 66.667 | 13.33 | 0.00 | 42.82 | 4.01 |
64 | 65 | 3.630013 | TGGTCGCTGCTCCAAGCT | 61.630 | 61.111 | 10.18 | 0.00 | 42.97 | 3.74 |
65 | 66 | 3.123620 | GGTCGCTGCTCCAAGCTG | 61.124 | 66.667 | 0.00 | 1.06 | 42.97 | 4.24 |
66 | 67 | 3.123620 | GTCGCTGCTCCAAGCTGG | 61.124 | 66.667 | 7.75 | 0.00 | 42.97 | 4.85 |
67 | 68 | 3.630013 | TCGCTGCTCCAAGCTGGT | 61.630 | 61.111 | 7.75 | 0.00 | 42.97 | 4.00 |
68 | 69 | 3.429141 | CGCTGCTCCAAGCTGGTG | 61.429 | 66.667 | 7.75 | 0.00 | 42.97 | 4.17 |
69 | 70 | 3.060615 | GCTGCTCCAAGCTGGTGG | 61.061 | 66.667 | 0.00 | 0.00 | 42.97 | 4.61 |
70 | 71 | 3.060615 | CTGCTCCAAGCTGGTGGC | 61.061 | 66.667 | 0.00 | 7.49 | 42.97 | 5.01 |
99 | 100 | 3.842923 | CGCTGAGCACGGGATCCT | 61.843 | 66.667 | 12.58 | 0.00 | 0.00 | 3.24 |
100 | 101 | 2.202987 | GCTGAGCACGGGATCCTG | 60.203 | 66.667 | 19.66 | 19.66 | 0.00 | 3.86 |
101 | 102 | 2.202987 | CTGAGCACGGGATCCTGC | 60.203 | 66.667 | 21.17 | 18.53 | 0.00 | 4.85 |
102 | 103 | 4.147449 | TGAGCACGGGATCCTGCG | 62.147 | 66.667 | 21.17 | 12.71 | 38.51 | 5.18 |
103 | 104 | 4.899239 | GAGCACGGGATCCTGCGG | 62.899 | 72.222 | 21.17 | 14.03 | 38.51 | 5.69 |
106 | 107 | 4.776322 | CACGGGATCCTGCGGCAA | 62.776 | 66.667 | 21.17 | 0.00 | 0.00 | 4.52 |
107 | 108 | 4.778143 | ACGGGATCCTGCGGCAAC | 62.778 | 66.667 | 21.17 | 0.00 | 0.00 | 4.17 |
120 | 121 | 4.162690 | GCAACGAGGCCGGGATCT | 62.163 | 66.667 | 2.18 | 0.00 | 40.78 | 2.75 |
121 | 122 | 2.107141 | CAACGAGGCCGGGATCTC | 59.893 | 66.667 | 2.18 | 2.85 | 40.78 | 2.75 |
122 | 123 | 3.155167 | AACGAGGCCGGGATCTCC | 61.155 | 66.667 | 2.18 | 0.00 | 40.78 | 3.71 |
133 | 134 | 1.551452 | GGGATCTCCGGATCTGTAGG | 58.449 | 60.000 | 3.57 | 0.00 | 45.53 | 3.18 |
134 | 135 | 0.892063 | GGATCTCCGGATCTGTAGGC | 59.108 | 60.000 | 3.57 | 0.00 | 45.53 | 3.93 |
135 | 136 | 0.523966 | GATCTCCGGATCTGTAGGCG | 59.476 | 60.000 | 3.57 | 0.00 | 43.55 | 5.52 |
136 | 137 | 0.896019 | ATCTCCGGATCTGTAGGCGG | 60.896 | 60.000 | 3.57 | 0.00 | 0.00 | 6.13 |
137 | 138 | 1.528542 | CTCCGGATCTGTAGGCGGA | 60.529 | 63.158 | 3.57 | 8.05 | 0.00 | 5.54 |
138 | 139 | 1.519751 | CTCCGGATCTGTAGGCGGAG | 61.520 | 65.000 | 17.61 | 17.61 | 38.28 | 4.63 |
139 | 140 | 2.565645 | CCGGATCTGTAGGCGGAGG | 61.566 | 68.421 | 0.00 | 0.00 | 32.83 | 4.30 |
140 | 141 | 1.528542 | CGGATCTGTAGGCGGAGGA | 60.529 | 63.158 | 0.00 | 0.00 | 32.83 | 3.71 |
141 | 142 | 1.519751 | CGGATCTGTAGGCGGAGGAG | 61.520 | 65.000 | 0.00 | 0.00 | 32.83 | 3.69 |
142 | 143 | 1.182385 | GGATCTGTAGGCGGAGGAGG | 61.182 | 65.000 | 0.00 | 0.00 | 32.83 | 4.30 |
143 | 144 | 1.152440 | ATCTGTAGGCGGAGGAGGG | 60.152 | 63.158 | 0.00 | 0.00 | 32.83 | 4.30 |
144 | 145 | 2.664835 | ATCTGTAGGCGGAGGAGGGG | 62.665 | 65.000 | 0.00 | 0.00 | 32.83 | 4.79 |
145 | 146 | 3.352748 | TGTAGGCGGAGGAGGGGA | 61.353 | 66.667 | 0.00 | 0.00 | 0.00 | 4.81 |
146 | 147 | 2.201771 | GTAGGCGGAGGAGGGGAT | 59.798 | 66.667 | 0.00 | 0.00 | 0.00 | 3.85 |
147 | 148 | 1.909287 | GTAGGCGGAGGAGGGGATC | 60.909 | 68.421 | 0.00 | 0.00 | 0.00 | 3.36 |
209 | 210 | 2.809601 | CGGCGTTGAGGGTTCGAG | 60.810 | 66.667 | 0.00 | 0.00 | 0.00 | 4.04 |
210 | 211 | 2.342648 | GGCGTTGAGGGTTCGAGT | 59.657 | 61.111 | 0.00 | 0.00 | 0.00 | 4.18 |
211 | 212 | 2.027625 | GGCGTTGAGGGTTCGAGTG | 61.028 | 63.158 | 0.00 | 0.00 | 0.00 | 3.51 |
212 | 213 | 2.027625 | GCGTTGAGGGTTCGAGTGG | 61.028 | 63.158 | 0.00 | 0.00 | 0.00 | 4.00 |
213 | 214 | 1.374252 | CGTTGAGGGTTCGAGTGGG | 60.374 | 63.158 | 0.00 | 0.00 | 0.00 | 4.61 |
214 | 215 | 1.812686 | CGTTGAGGGTTCGAGTGGGA | 61.813 | 60.000 | 0.00 | 0.00 | 0.00 | 4.37 |
215 | 216 | 0.613777 | GTTGAGGGTTCGAGTGGGAT | 59.386 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
216 | 217 | 1.829222 | GTTGAGGGTTCGAGTGGGATA | 59.171 | 52.381 | 0.00 | 0.00 | 0.00 | 2.59 |
217 | 218 | 1.776662 | TGAGGGTTCGAGTGGGATAG | 58.223 | 55.000 | 0.00 | 0.00 | 0.00 | 2.08 |
218 | 219 | 1.006758 | TGAGGGTTCGAGTGGGATAGT | 59.993 | 52.381 | 0.00 | 0.00 | 0.00 | 2.12 |
219 | 220 | 1.409427 | GAGGGTTCGAGTGGGATAGTG | 59.591 | 57.143 | 0.00 | 0.00 | 0.00 | 2.74 |
220 | 221 | 0.464452 | GGGTTCGAGTGGGATAGTGG | 59.536 | 60.000 | 0.00 | 0.00 | 0.00 | 4.00 |
221 | 222 | 1.192428 | GGTTCGAGTGGGATAGTGGT | 58.808 | 55.000 | 0.00 | 0.00 | 0.00 | 4.16 |
222 | 223 | 1.134788 | GGTTCGAGTGGGATAGTGGTG | 60.135 | 57.143 | 0.00 | 0.00 | 0.00 | 4.17 |
223 | 224 | 1.134788 | GTTCGAGTGGGATAGTGGTGG | 60.135 | 57.143 | 0.00 | 0.00 | 0.00 | 4.61 |
224 | 225 | 0.686441 | TCGAGTGGGATAGTGGTGGG | 60.686 | 60.000 | 0.00 | 0.00 | 0.00 | 4.61 |
225 | 226 | 1.527370 | GAGTGGGATAGTGGTGGGC | 59.473 | 63.158 | 0.00 | 0.00 | 0.00 | 5.36 |
226 | 227 | 2.189521 | GTGGGATAGTGGTGGGCG | 59.810 | 66.667 | 0.00 | 0.00 | 0.00 | 6.13 |
227 | 228 | 2.285069 | TGGGATAGTGGTGGGCGT | 60.285 | 61.111 | 0.00 | 0.00 | 0.00 | 5.68 |
228 | 229 | 2.189521 | GGGATAGTGGTGGGCGTG | 59.810 | 66.667 | 0.00 | 0.00 | 0.00 | 5.34 |
229 | 230 | 2.363975 | GGGATAGTGGTGGGCGTGA | 61.364 | 63.158 | 0.00 | 0.00 | 0.00 | 4.35 |
230 | 231 | 1.600107 | GGATAGTGGTGGGCGTGAA | 59.400 | 57.895 | 0.00 | 0.00 | 0.00 | 3.18 |
231 | 232 | 0.462047 | GGATAGTGGTGGGCGTGAAG | 60.462 | 60.000 | 0.00 | 0.00 | 0.00 | 3.02 |
232 | 233 | 0.462047 | GATAGTGGTGGGCGTGAAGG | 60.462 | 60.000 | 0.00 | 0.00 | 0.00 | 3.46 |
233 | 234 | 0.907704 | ATAGTGGTGGGCGTGAAGGA | 60.908 | 55.000 | 0.00 | 0.00 | 0.00 | 3.36 |
234 | 235 | 1.541310 | TAGTGGTGGGCGTGAAGGAG | 61.541 | 60.000 | 0.00 | 0.00 | 0.00 | 3.69 |
235 | 236 | 3.636231 | TGGTGGGCGTGAAGGAGG | 61.636 | 66.667 | 0.00 | 0.00 | 0.00 | 4.30 |
236 | 237 | 3.319198 | GGTGGGCGTGAAGGAGGA | 61.319 | 66.667 | 0.00 | 0.00 | 0.00 | 3.71 |
237 | 238 | 2.747686 | GTGGGCGTGAAGGAGGAA | 59.252 | 61.111 | 0.00 | 0.00 | 0.00 | 3.36 |
238 | 239 | 1.376037 | GTGGGCGTGAAGGAGGAAG | 60.376 | 63.158 | 0.00 | 0.00 | 0.00 | 3.46 |
239 | 240 | 2.269241 | GGGCGTGAAGGAGGAAGG | 59.731 | 66.667 | 0.00 | 0.00 | 0.00 | 3.46 |
240 | 241 | 2.291043 | GGGCGTGAAGGAGGAAGGA | 61.291 | 63.158 | 0.00 | 0.00 | 0.00 | 3.36 |
241 | 242 | 1.219393 | GGCGTGAAGGAGGAAGGAG | 59.781 | 63.158 | 0.00 | 0.00 | 0.00 | 3.69 |
242 | 243 | 1.448717 | GCGTGAAGGAGGAAGGAGC | 60.449 | 63.158 | 0.00 | 0.00 | 0.00 | 4.70 |
243 | 244 | 1.975327 | CGTGAAGGAGGAAGGAGCA | 59.025 | 57.895 | 0.00 | 0.00 | 0.00 | 4.26 |
244 | 245 | 0.108424 | CGTGAAGGAGGAAGGAGCAG | 60.108 | 60.000 | 0.00 | 0.00 | 0.00 | 4.24 |
245 | 246 | 1.270907 | GTGAAGGAGGAAGGAGCAGA | 58.729 | 55.000 | 0.00 | 0.00 | 0.00 | 4.26 |
246 | 247 | 1.206849 | GTGAAGGAGGAAGGAGCAGAG | 59.793 | 57.143 | 0.00 | 0.00 | 0.00 | 3.35 |
247 | 248 | 0.829990 | GAAGGAGGAAGGAGCAGAGG | 59.170 | 60.000 | 0.00 | 0.00 | 0.00 | 3.69 |
248 | 249 | 1.271127 | AAGGAGGAAGGAGCAGAGGC | 61.271 | 60.000 | 0.00 | 0.00 | 41.61 | 4.70 |
249 | 250 | 1.992277 | GGAGGAAGGAGCAGAGGCA | 60.992 | 63.158 | 0.00 | 0.00 | 44.61 | 4.75 |
250 | 251 | 1.557269 | GGAGGAAGGAGCAGAGGCAA | 61.557 | 60.000 | 0.00 | 0.00 | 44.61 | 4.52 |
251 | 252 | 0.326264 | GAGGAAGGAGCAGAGGCAAA | 59.674 | 55.000 | 0.00 | 0.00 | 44.61 | 3.68 |
252 | 253 | 0.773644 | AGGAAGGAGCAGAGGCAAAA | 59.226 | 50.000 | 0.00 | 0.00 | 44.61 | 2.44 |
253 | 254 | 0.884514 | GGAAGGAGCAGAGGCAAAAC | 59.115 | 55.000 | 0.00 | 0.00 | 44.61 | 2.43 |
254 | 255 | 1.546548 | GGAAGGAGCAGAGGCAAAACT | 60.547 | 52.381 | 0.00 | 0.00 | 44.61 | 2.66 |
255 | 256 | 1.538950 | GAAGGAGCAGAGGCAAAACTG | 59.461 | 52.381 | 0.00 | 0.00 | 44.61 | 3.16 |
256 | 257 | 0.475906 | AGGAGCAGAGGCAAAACTGT | 59.524 | 50.000 | 0.00 | 0.00 | 44.61 | 3.55 |
257 | 258 | 1.133668 | AGGAGCAGAGGCAAAACTGTT | 60.134 | 47.619 | 0.00 | 0.00 | 44.61 | 3.16 |
258 | 259 | 1.268079 | GGAGCAGAGGCAAAACTGTTC | 59.732 | 52.381 | 0.00 | 0.00 | 44.61 | 3.18 |
259 | 260 | 0.947244 | AGCAGAGGCAAAACTGTTCG | 59.053 | 50.000 | 0.00 | 0.00 | 44.61 | 3.95 |
260 | 261 | 0.944386 | GCAGAGGCAAAACTGTTCGA | 59.056 | 50.000 | 0.00 | 0.00 | 40.72 | 3.71 |
261 | 262 | 1.069636 | GCAGAGGCAAAACTGTTCGAG | 60.070 | 52.381 | 0.00 | 0.00 | 40.72 | 4.04 |
262 | 263 | 2.483876 | CAGAGGCAAAACTGTTCGAGA | 58.516 | 47.619 | 0.00 | 0.00 | 0.00 | 4.04 |
263 | 264 | 2.478134 | CAGAGGCAAAACTGTTCGAGAG | 59.522 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
264 | 265 | 2.365617 | AGAGGCAAAACTGTTCGAGAGA | 59.634 | 45.455 | 0.00 | 0.00 | 39.20 | 3.10 |
265 | 266 | 2.734079 | GAGGCAAAACTGTTCGAGAGAG | 59.266 | 50.000 | 0.00 | 0.00 | 43.69 | 3.20 |
266 | 267 | 2.365617 | AGGCAAAACTGTTCGAGAGAGA | 59.634 | 45.455 | 0.00 | 0.00 | 43.69 | 3.10 |
267 | 268 | 2.734079 | GGCAAAACTGTTCGAGAGAGAG | 59.266 | 50.000 | 0.00 | 0.00 | 43.69 | 3.20 |
268 | 269 | 2.734079 | GCAAAACTGTTCGAGAGAGAGG | 59.266 | 50.000 | 0.00 | 0.00 | 43.69 | 3.69 |
269 | 270 | 3.321497 | CAAAACTGTTCGAGAGAGAGGG | 58.679 | 50.000 | 0.00 | 0.00 | 43.69 | 4.30 |
270 | 271 | 0.892063 | AACTGTTCGAGAGAGAGGGC | 59.108 | 55.000 | 0.82 | 0.00 | 43.69 | 5.19 |
271 | 272 | 0.039035 | ACTGTTCGAGAGAGAGGGCT | 59.961 | 55.000 | 0.82 | 0.00 | 43.69 | 5.19 |
272 | 273 | 0.455410 | CTGTTCGAGAGAGAGGGCTG | 59.545 | 60.000 | 0.00 | 0.00 | 43.69 | 4.85 |
273 | 274 | 1.140804 | GTTCGAGAGAGAGGGCTGC | 59.859 | 63.158 | 0.00 | 0.00 | 43.69 | 5.25 |
274 | 275 | 1.000270 | TTCGAGAGAGAGGGCTGCT | 60.000 | 57.895 | 0.00 | 0.00 | 43.69 | 4.24 |
275 | 276 | 1.318886 | TTCGAGAGAGAGGGCTGCTG | 61.319 | 60.000 | 0.00 | 0.00 | 43.69 | 4.41 |
276 | 277 | 2.784356 | CGAGAGAGAGGGCTGCTGG | 61.784 | 68.421 | 0.00 | 0.00 | 0.00 | 4.85 |
277 | 278 | 3.082701 | AGAGAGAGGGCTGCTGGC | 61.083 | 66.667 | 8.77 | 8.77 | 40.90 | 4.85 |
278 | 279 | 3.082701 | GAGAGAGGGCTGCTGGCT | 61.083 | 66.667 | 16.61 | 3.18 | 41.46 | 4.75 |
279 | 280 | 2.610233 | AGAGAGGGCTGCTGGCTT | 60.610 | 61.111 | 16.61 | 9.44 | 41.46 | 4.35 |
280 | 281 | 2.438075 | GAGAGGGCTGCTGGCTTG | 60.438 | 66.667 | 16.61 | 0.00 | 41.46 | 4.01 |
281 | 282 | 3.255397 | AGAGGGCTGCTGGCTTGT | 61.255 | 61.111 | 16.61 | 5.06 | 41.46 | 3.16 |
282 | 283 | 2.282745 | GAGGGCTGCTGGCTTGTT | 60.283 | 61.111 | 16.61 | 0.99 | 41.46 | 2.83 |
283 | 284 | 2.282745 | AGGGCTGCTGGCTTGTTC | 60.283 | 61.111 | 16.61 | 0.00 | 41.46 | 3.18 |
284 | 285 | 2.282745 | GGGCTGCTGGCTTGTTCT | 60.283 | 61.111 | 16.61 | 0.00 | 41.46 | 3.01 |
285 | 286 | 2.633509 | GGGCTGCTGGCTTGTTCTG | 61.634 | 63.158 | 16.61 | 0.00 | 41.46 | 3.02 |
286 | 287 | 1.900498 | GGCTGCTGGCTTGTTCTGT | 60.900 | 57.895 | 10.05 | 0.00 | 41.46 | 3.41 |
287 | 288 | 1.285023 | GCTGCTGGCTTGTTCTGTG | 59.715 | 57.895 | 0.00 | 0.00 | 38.06 | 3.66 |
288 | 289 | 1.285023 | CTGCTGGCTTGTTCTGTGC | 59.715 | 57.895 | 0.00 | 0.00 | 0.00 | 4.57 |
289 | 290 | 2.253452 | GCTGGCTTGTTCTGTGCG | 59.747 | 61.111 | 0.00 | 0.00 | 0.00 | 5.34 |
290 | 291 | 2.253452 | CTGGCTTGTTCTGTGCGC | 59.747 | 61.111 | 0.00 | 0.00 | 0.00 | 6.09 |
291 | 292 | 3.259425 | CTGGCTTGTTCTGTGCGCC | 62.259 | 63.158 | 4.18 | 0.00 | 41.06 | 6.53 |
292 | 293 | 3.286751 | GGCTTGTTCTGTGCGCCA | 61.287 | 61.111 | 4.18 | 0.90 | 40.41 | 5.69 |
293 | 294 | 2.721231 | GCTTGTTCTGTGCGCCAA | 59.279 | 55.556 | 4.18 | 0.00 | 0.00 | 4.52 |
294 | 295 | 1.286880 | GCTTGTTCTGTGCGCCAAT | 59.713 | 52.632 | 4.18 | 0.00 | 0.00 | 3.16 |
295 | 296 | 0.730494 | GCTTGTTCTGTGCGCCAATC | 60.730 | 55.000 | 4.18 | 0.00 | 0.00 | 2.67 |
296 | 297 | 0.109597 | CTTGTTCTGTGCGCCAATCC | 60.110 | 55.000 | 4.18 | 0.00 | 0.00 | 3.01 |
297 | 298 | 0.821301 | TTGTTCTGTGCGCCAATCCA | 60.821 | 50.000 | 4.18 | 0.00 | 0.00 | 3.41 |
298 | 299 | 1.236616 | TGTTCTGTGCGCCAATCCAG | 61.237 | 55.000 | 4.18 | 3.30 | 0.00 | 3.86 |
303 | 304 | 4.445710 | TGCGCCAATCCAGCCCAT | 62.446 | 61.111 | 4.18 | 0.00 | 0.00 | 4.00 |
447 | 450 | 2.033448 | CGCCAACTACAAGCCCCA | 59.967 | 61.111 | 0.00 | 0.00 | 0.00 | 4.96 |
460 | 463 | 3.886001 | CCCCACCTAATCGCCCCC | 61.886 | 72.222 | 0.00 | 0.00 | 0.00 | 5.40 |
587 | 602 | 3.701241 | TGTTCCTTCGTTGCAATTGTTC | 58.299 | 40.909 | 0.59 | 0.00 | 0.00 | 3.18 |
745 | 764 | 2.031870 | GGGGCATGTAAAATCCACTCC | 58.968 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
753 | 772 | 5.187621 | TGTAAAATCCACTCCCCCTTAAG | 57.812 | 43.478 | 0.00 | 0.00 | 0.00 | 1.85 |
771 | 793 | 5.062308 | CCTTAAGAGTTGTTGTATCGTCTGC | 59.938 | 44.000 | 3.36 | 0.00 | 0.00 | 4.26 |
790 | 812 | 2.039216 | TGCAGTCCCGATCTTTGGTAAA | 59.961 | 45.455 | 0.00 | 0.00 | 0.00 | 2.01 |
837 | 866 | 5.584551 | AAGTACAAAGGGACTGAAAGGAT | 57.415 | 39.130 | 0.00 | 0.00 | 40.86 | 3.24 |
890 | 924 | 3.552604 | TTTCGCCTACTGCAAACATTC | 57.447 | 42.857 | 0.00 | 0.00 | 41.33 | 2.67 |
912 | 946 | 5.030147 | TCCCTGGATAGTTGTATCTTGTGT | 58.970 | 41.667 | 0.00 | 0.00 | 36.11 | 3.72 |
1050 | 1090 | 0.325110 | TTGCTGAGGAGGAGGAGGAG | 60.325 | 60.000 | 0.00 | 0.00 | 0.00 | 3.69 |
1161 | 1201 | 6.822442 | TGTAAGTTGGTTTCATCTCACAGTA | 58.178 | 36.000 | 0.00 | 0.00 | 0.00 | 2.74 |
1235 | 1277 | 7.678947 | AAGAAGATGTGGTGTCTCTAAATTG | 57.321 | 36.000 | 0.00 | 0.00 | 0.00 | 2.32 |
1345 | 1399 | 8.829373 | ATAGAGTCCCAGAGCAAATTATTTTT | 57.171 | 30.769 | 0.00 | 0.00 | 0.00 | 1.94 |
1366 | 1429 | 6.826893 | TTTTTGTTTGCACTAAGATGAAGC | 57.173 | 33.333 | 0.00 | 0.00 | 0.00 | 3.86 |
1367 | 1430 | 5.512753 | TTTGTTTGCACTAAGATGAAGCA | 57.487 | 34.783 | 0.00 | 0.00 | 0.00 | 3.91 |
1368 | 1431 | 4.754372 | TGTTTGCACTAAGATGAAGCAG | 57.246 | 40.909 | 0.00 | 0.00 | 36.47 | 4.24 |
1369 | 1432 | 4.136796 | TGTTTGCACTAAGATGAAGCAGT | 58.863 | 39.130 | 0.00 | 0.00 | 36.47 | 4.40 |
1370 | 1433 | 5.304778 | TGTTTGCACTAAGATGAAGCAGTA | 58.695 | 37.500 | 0.00 | 0.00 | 36.47 | 2.74 |
1371 | 1434 | 5.409520 | TGTTTGCACTAAGATGAAGCAGTAG | 59.590 | 40.000 | 0.00 | 0.00 | 36.47 | 2.57 |
1372 | 1435 | 4.128925 | TGCACTAAGATGAAGCAGTAGG | 57.871 | 45.455 | 0.00 | 0.00 | 0.00 | 3.18 |
1415 | 1478 | 6.951971 | AGAGAGTTCTTGCCATTAGTATGTT | 58.048 | 36.000 | 0.00 | 0.00 | 0.00 | 2.71 |
1534 | 1597 | 8.664798 | CGTTATCAGATACAAATTCCTGTTCAA | 58.335 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
1570 | 1633 | 1.319669 | GTTTCGTAGATTCACGGCGAC | 59.680 | 52.381 | 16.62 | 0.00 | 42.19 | 5.19 |
1573 | 1636 | 0.914551 | CGTAGATTCACGGCGACAAG | 59.085 | 55.000 | 16.62 | 0.00 | 38.26 | 3.16 |
1598 | 1663 | 6.362820 | GCTAGGTAGTTATGCGTTTAGTGATC | 59.637 | 42.308 | 0.00 | 0.00 | 0.00 | 2.92 |
1614 | 1680 | 4.579869 | AGTGATCGTCTTGTTGGCTTATT | 58.420 | 39.130 | 0.00 | 0.00 | 0.00 | 1.40 |
1628 | 1694 | 4.766375 | TGGCTTATTTGAGCTACCTGTAC | 58.234 | 43.478 | 0.00 | 0.00 | 42.32 | 2.90 |
1784 | 1851 | 4.330620 | TCGCTTTTGAAGACGTTTACTTGT | 59.669 | 37.500 | 0.00 | 0.00 | 32.51 | 3.16 |
1878 | 1954 | 7.807907 | AGTTTATCTTATTGAACTTTTGGCACG | 59.192 | 33.333 | 0.00 | 0.00 | 0.00 | 5.34 |
1952 | 3073 | 4.105057 | AGTGAATTTGTTGGTAGGGGTGTA | 59.895 | 41.667 | 0.00 | 0.00 | 0.00 | 2.90 |
1953 | 3074 | 4.457949 | GTGAATTTGTTGGTAGGGGTGTAG | 59.542 | 45.833 | 0.00 | 0.00 | 0.00 | 2.74 |
1955 | 3076 | 5.014755 | TGAATTTGTTGGTAGGGGTGTAGAT | 59.985 | 40.000 | 0.00 | 0.00 | 0.00 | 1.98 |
1956 | 3077 | 4.563140 | TTTGTTGGTAGGGGTGTAGATC | 57.437 | 45.455 | 0.00 | 0.00 | 0.00 | 2.75 |
1958 | 3079 | 3.798515 | TGTTGGTAGGGGTGTAGATCTT | 58.201 | 45.455 | 0.00 | 0.00 | 0.00 | 2.40 |
1959 | 3080 | 4.172807 | TGTTGGTAGGGGTGTAGATCTTT | 58.827 | 43.478 | 0.00 | 0.00 | 0.00 | 2.52 |
1960 | 3081 | 4.224370 | TGTTGGTAGGGGTGTAGATCTTTC | 59.776 | 45.833 | 0.00 | 0.00 | 0.00 | 2.62 |
1961 | 3082 | 4.069312 | TGGTAGGGGTGTAGATCTTTCA | 57.931 | 45.455 | 0.00 | 0.00 | 0.00 | 2.69 |
2016 | 3140 | 6.593807 | TGTTAGAACTTTACTTTGGGTGCTA | 58.406 | 36.000 | 0.00 | 0.00 | 0.00 | 3.49 |
2035 | 3159 | 9.646427 | GGGTGCTAATGTAATTTGTTTAATGAA | 57.354 | 29.630 | 0.00 | 0.00 | 37.87 | 2.57 |
2062 | 3186 | 3.923017 | AAGTTTGATCGCCTCCAAAAG | 57.077 | 42.857 | 0.00 | 0.00 | 34.52 | 2.27 |
2081 | 3205 | 3.520691 | AGGGAACTTTACTTGGGGTTC | 57.479 | 47.619 | 0.00 | 0.00 | 37.44 | 3.62 |
2095 | 3219 | 6.478129 | ACTTGGGGTTCATATTTTAGAACGA | 58.522 | 36.000 | 0.00 | 0.00 | 43.79 | 3.85 |
2096 | 3220 | 7.116736 | ACTTGGGGTTCATATTTTAGAACGAT | 58.883 | 34.615 | 0.00 | 0.00 | 43.79 | 3.73 |
2135 | 3259 | 9.143155 | ACCCATTTATCTGGATATGTTAAAACC | 57.857 | 33.333 | 0.00 | 0.00 | 38.69 | 3.27 |
2325 | 3453 | 8.068892 | TGTACCAGTTAACTTCATTGGTTTTT | 57.931 | 30.769 | 18.40 | 0.80 | 41.97 | 1.94 |
2331 | 3461 | 8.197439 | CAGTTAACTTCATTGGTTTTTCTTCCT | 58.803 | 33.333 | 5.07 | 0.00 | 0.00 | 3.36 |
2492 | 3628 | 9.079833 | CATGCTATTTATTTTCAGAAAGTGGTG | 57.920 | 33.333 | 1.20 | 0.00 | 0.00 | 4.17 |
2560 | 3696 | 4.133820 | CGCATGTCCTGTTAAATCCCATA | 58.866 | 43.478 | 0.00 | 0.00 | 0.00 | 2.74 |
2570 | 3706 | 6.152154 | CCTGTTAAATCCCATAACCGAGTTTT | 59.848 | 38.462 | 0.00 | 0.00 | 33.32 | 2.43 |
2607 | 3743 | 2.146342 | CCCTGTGAATACGATGATGCC | 58.854 | 52.381 | 0.00 | 0.00 | 0.00 | 4.40 |
2648 | 3786 | 2.677836 | GCTTGTTTCGTATGAGATGGCA | 59.322 | 45.455 | 0.00 | 0.00 | 0.00 | 4.92 |
2649 | 3787 | 3.485877 | GCTTGTTTCGTATGAGATGGCAC | 60.486 | 47.826 | 0.00 | 0.00 | 0.00 | 5.01 |
2670 | 3812 | 4.022935 | CACCTTGTTCACACATAGCATGTT | 60.023 | 41.667 | 0.00 | 0.00 | 42.70 | 2.71 |
2725 | 3867 | 2.225091 | TGCCATTCATGAGGAACCTTGT | 60.225 | 45.455 | 5.19 | 0.00 | 38.60 | 3.16 |
2727 | 3869 | 3.119352 | GCCATTCATGAGGAACCTTGTTC | 60.119 | 47.826 | 5.19 | 0.00 | 38.60 | 3.18 |
2730 | 3872 | 2.348472 | TCATGAGGAACCTTGTTCCCT | 58.652 | 47.619 | 19.62 | 9.32 | 39.39 | 4.20 |
2732 | 3874 | 0.771127 | TGAGGAACCTTGTTCCCTGG | 59.229 | 55.000 | 19.62 | 0.00 | 39.39 | 4.45 |
2733 | 3875 | 0.609406 | GAGGAACCTTGTTCCCTGGC | 60.609 | 60.000 | 19.62 | 6.29 | 39.39 | 4.85 |
2735 | 3877 | 2.597510 | AACCTTGTTCCCTGGCGC | 60.598 | 61.111 | 0.00 | 0.00 | 0.00 | 6.53 |
2738 | 3880 | 4.697756 | CTTGTTCCCTGGCGCCGA | 62.698 | 66.667 | 23.90 | 10.59 | 0.00 | 5.54 |
2773 | 3915 | 8.776470 | CAATTTTTACAGTGGATTCATTTGCTT | 58.224 | 29.630 | 0.00 | 0.00 | 0.00 | 3.91 |
2813 | 3955 | 2.673775 | TTCCAGATGCTCCACCAAAA | 57.326 | 45.000 | 0.00 | 0.00 | 0.00 | 2.44 |
2816 | 3958 | 1.548582 | CCAGATGCTCCACCAAAACCT | 60.549 | 52.381 | 0.00 | 0.00 | 0.00 | 3.50 |
2824 | 3966 | 2.297033 | CTCCACCAAAACCTGTTCATGG | 59.703 | 50.000 | 11.26 | 11.26 | 36.27 | 3.66 |
2886 | 4028 | 0.598065 | AAACATCAAGGAAGCACCGC | 59.402 | 50.000 | 0.00 | 0.00 | 44.74 | 5.68 |
2997 | 4139 | 2.932261 | ACAGGGACAAGGAGTTTTGAC | 58.068 | 47.619 | 0.00 | 0.00 | 0.00 | 3.18 |
2998 | 4140 | 2.509964 | ACAGGGACAAGGAGTTTTGACT | 59.490 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
3000 | 4142 | 3.049344 | AGGGACAAGGAGTTTTGACTCT | 58.951 | 45.455 | 6.53 | 0.00 | 36.97 | 3.24 |
3001 | 4143 | 3.459969 | AGGGACAAGGAGTTTTGACTCTT | 59.540 | 43.478 | 6.53 | 0.00 | 31.09 | 2.85 |
3002 | 4144 | 3.815962 | GGGACAAGGAGTTTTGACTCTTC | 59.184 | 47.826 | 6.53 | 0.03 | 36.97 | 2.87 |
3003 | 4145 | 4.445019 | GGGACAAGGAGTTTTGACTCTTCT | 60.445 | 45.833 | 6.53 | 0.00 | 36.97 | 2.85 |
3004 | 4146 | 5.221661 | GGGACAAGGAGTTTTGACTCTTCTA | 60.222 | 44.000 | 6.53 | 0.00 | 36.97 | 2.10 |
3005 | 4147 | 6.289064 | GGACAAGGAGTTTTGACTCTTCTAA | 58.711 | 40.000 | 6.53 | 0.00 | 36.97 | 2.10 |
3006 | 4148 | 6.937465 | GGACAAGGAGTTTTGACTCTTCTAAT | 59.063 | 38.462 | 6.53 | 0.00 | 36.97 | 1.73 |
3007 | 4149 | 7.095017 | GGACAAGGAGTTTTGACTCTTCTAATG | 60.095 | 40.741 | 6.53 | 0.00 | 36.97 | 1.90 |
3008 | 4150 | 6.205658 | ACAAGGAGTTTTGACTCTTCTAATGC | 59.794 | 38.462 | 6.53 | 0.00 | 36.97 | 3.56 |
3009 | 4151 | 5.869579 | AGGAGTTTTGACTCTTCTAATGCA | 58.130 | 37.500 | 6.53 | 0.00 | 36.97 | 3.96 |
3041 | 4215 | 1.923356 | TCCTTTGACCCTTGGAATGC | 58.077 | 50.000 | 0.00 | 0.00 | 0.00 | 3.56 |
3042 | 4216 | 0.527565 | CCTTTGACCCTTGGAATGCG | 59.472 | 55.000 | 0.00 | 0.00 | 0.00 | 4.73 |
3044 | 4218 | 1.470098 | CTTTGACCCTTGGAATGCGAG | 59.530 | 52.381 | 0.00 | 0.00 | 0.00 | 5.03 |
3046 | 4220 | 1.198094 | TGACCCTTGGAATGCGAGGA | 61.198 | 55.000 | 9.87 | 0.00 | 32.11 | 3.71 |
3047 | 4221 | 0.181350 | GACCCTTGGAATGCGAGGAT | 59.819 | 55.000 | 9.87 | 0.00 | 32.11 | 3.24 |
3050 | 4224 | 1.417890 | CCCTTGGAATGCGAGGATAGT | 59.582 | 52.381 | 9.87 | 0.00 | 32.11 | 2.12 |
3052 | 4226 | 3.555168 | CCCTTGGAATGCGAGGATAGTAC | 60.555 | 52.174 | 9.87 | 0.00 | 32.11 | 2.73 |
3053 | 4227 | 3.322254 | CCTTGGAATGCGAGGATAGTACT | 59.678 | 47.826 | 1.20 | 0.00 | 32.11 | 2.73 |
3054 | 4228 | 4.551388 | CTTGGAATGCGAGGATAGTACTC | 58.449 | 47.826 | 0.00 | 0.00 | 0.00 | 2.59 |
3055 | 4229 | 2.891580 | TGGAATGCGAGGATAGTACTCC | 59.108 | 50.000 | 0.00 | 0.00 | 35.37 | 3.85 |
3098 | 4280 | 3.306156 | GCATTCTCTATCCCGAGGTAACC | 60.306 | 52.174 | 0.00 | 0.00 | 37.17 | 2.85 |
3099 | 4281 | 3.675348 | TTCTCTATCCCGAGGTAACCA | 57.325 | 47.619 | 0.00 | 0.00 | 37.17 | 3.67 |
3103 | 4285 | 1.111116 | TATCCCGAGGTAACCAGCGG | 61.111 | 60.000 | 7.41 | 7.41 | 41.25 | 5.52 |
3126 | 4314 | 0.583438 | CGATGCATGATTCCGGTGAC | 59.417 | 55.000 | 2.46 | 0.00 | 0.00 | 3.67 |
3131 | 4319 | 2.499693 | TGCATGATTCCGGTGACTCTTA | 59.500 | 45.455 | 0.00 | 0.00 | 0.00 | 2.10 |
3140 | 4328 | 2.882137 | CCGGTGACTCTTATCCTCTCTC | 59.118 | 54.545 | 0.00 | 0.00 | 0.00 | 3.20 |
3142 | 4330 | 4.202377 | CCGGTGACTCTTATCCTCTCTCTA | 60.202 | 50.000 | 0.00 | 0.00 | 0.00 | 2.43 |
3147 | 4335 | 7.174946 | GGTGACTCTTATCCTCTCTCTATGAAG | 59.825 | 44.444 | 0.00 | 0.00 | 0.00 | 3.02 |
3152 | 4340 | 8.574251 | TCTTATCCTCTCTCTATGAAGTATGC | 57.426 | 38.462 | 0.00 | 0.00 | 0.00 | 3.14 |
3153 | 4341 | 8.166726 | TCTTATCCTCTCTCTATGAAGTATGCA | 58.833 | 37.037 | 0.00 | 0.00 | 0.00 | 3.96 |
3156 | 4344 | 5.534278 | TCCTCTCTCTATGAAGTATGCACTG | 59.466 | 44.000 | 0.00 | 0.00 | 34.36 | 3.66 |
3158 | 4346 | 6.183360 | CCTCTCTCTATGAAGTATGCACTGTT | 60.183 | 42.308 | 0.00 | 0.00 | 34.36 | 3.16 |
3165 | 4368 | 9.317936 | TCTATGAAGTATGCACTGTTAATCTTG | 57.682 | 33.333 | 0.00 | 0.00 | 34.36 | 3.02 |
3187 | 4390 | 4.341806 | TGTGAAATTCTGCAACAATGGAGT | 59.658 | 37.500 | 0.00 | 0.00 | 44.64 | 3.85 |
3188 | 4391 | 5.163426 | TGTGAAATTCTGCAACAATGGAGTT | 60.163 | 36.000 | 0.00 | 0.00 | 44.64 | 3.01 |
3191 | 4394 | 1.909700 | TCTGCAACAATGGAGTTCCC | 58.090 | 50.000 | 0.00 | 0.00 | 44.64 | 3.97 |
3192 | 4395 | 0.523072 | CTGCAACAATGGAGTTCCCG | 59.477 | 55.000 | 0.00 | 0.00 | 39.92 | 5.14 |
3194 | 4397 | 0.893727 | GCAACAATGGAGTTCCCGGT | 60.894 | 55.000 | 0.00 | 0.00 | 37.93 | 5.28 |
3199 | 4402 | 1.553248 | CAATGGAGTTCCCGGTCTGTA | 59.447 | 52.381 | 0.00 | 0.00 | 37.93 | 2.74 |
3203 | 4406 | 2.291735 | TGGAGTTCCCGGTCTGTATGTA | 60.292 | 50.000 | 0.00 | 0.00 | 37.93 | 2.29 |
3208 | 4411 | 5.018809 | AGTTCCCGGTCTGTATGTAAACTA | 58.981 | 41.667 | 0.00 | 0.00 | 0.00 | 2.24 |
3215 | 4418 | 5.276868 | CGGTCTGTATGTAAACTAATGCAGC | 60.277 | 44.000 | 0.00 | 0.00 | 36.71 | 5.25 |
3216 | 4419 | 5.817816 | GGTCTGTATGTAAACTAATGCAGCT | 59.182 | 40.000 | 0.00 | 0.00 | 36.71 | 4.24 |
3217 | 4420 | 6.018669 | GGTCTGTATGTAAACTAATGCAGCTC | 60.019 | 42.308 | 0.00 | 0.00 | 36.71 | 4.09 |
3218 | 4421 | 6.758886 | GTCTGTATGTAAACTAATGCAGCTCT | 59.241 | 38.462 | 0.00 | 0.00 | 36.71 | 4.09 |
3219 | 4422 | 6.758416 | TCTGTATGTAAACTAATGCAGCTCTG | 59.242 | 38.462 | 0.00 | 0.00 | 36.71 | 3.35 |
3232 | 4435 | 2.508526 | CAGCTCTGCCTAAAACTTGGT | 58.491 | 47.619 | 0.00 | 0.00 | 0.00 | 3.67 |
3233 | 4436 | 3.674997 | CAGCTCTGCCTAAAACTTGGTA | 58.325 | 45.455 | 0.00 | 0.00 | 0.00 | 3.25 |
3234 | 4437 | 4.072131 | CAGCTCTGCCTAAAACTTGGTAA | 58.928 | 43.478 | 0.00 | 0.00 | 0.00 | 2.85 |
3235 | 4438 | 4.518970 | CAGCTCTGCCTAAAACTTGGTAAA | 59.481 | 41.667 | 0.00 | 0.00 | 0.00 | 2.01 |
3236 | 4439 | 5.009610 | CAGCTCTGCCTAAAACTTGGTAAAA | 59.990 | 40.000 | 0.00 | 0.00 | 0.00 | 1.52 |
3237 | 4440 | 5.009710 | AGCTCTGCCTAAAACTTGGTAAAAC | 59.990 | 40.000 | 0.00 | 0.00 | 0.00 | 2.43 |
3238 | 4441 | 5.221165 | GCTCTGCCTAAAACTTGGTAAAACA | 60.221 | 40.000 | 0.00 | 0.00 | 0.00 | 2.83 |
3239 | 4442 | 6.516693 | GCTCTGCCTAAAACTTGGTAAAACAT | 60.517 | 38.462 | 0.00 | 0.00 | 0.00 | 2.71 |
3240 | 4443 | 6.977213 | TCTGCCTAAAACTTGGTAAAACATC | 58.023 | 36.000 | 0.00 | 0.00 | 0.00 | 3.06 |
3241 | 4444 | 6.015772 | TCTGCCTAAAACTTGGTAAAACATCC | 60.016 | 38.462 | 0.00 | 0.00 | 0.00 | 3.51 |
3242 | 4445 | 5.598830 | TGCCTAAAACTTGGTAAAACATCCA | 59.401 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
3243 | 4446 | 6.156519 | GCCTAAAACTTGGTAAAACATCCAG | 58.843 | 40.000 | 0.00 | 0.00 | 35.05 | 3.86 |
3244 | 4447 | 6.239204 | GCCTAAAACTTGGTAAAACATCCAGT | 60.239 | 38.462 | 0.00 | 0.00 | 35.05 | 4.00 |
3245 | 4448 | 7.145323 | CCTAAAACTTGGTAAAACATCCAGTG | 58.855 | 38.462 | 0.00 | 0.00 | 35.05 | 3.66 |
3246 | 4449 | 4.584327 | AACTTGGTAAAACATCCAGTGC | 57.416 | 40.909 | 0.00 | 0.00 | 35.05 | 4.40 |
3247 | 4450 | 3.832527 | ACTTGGTAAAACATCCAGTGCT | 58.167 | 40.909 | 0.00 | 0.00 | 35.05 | 4.40 |
3248 | 4451 | 4.215109 | ACTTGGTAAAACATCCAGTGCTT | 58.785 | 39.130 | 0.00 | 0.00 | 35.05 | 3.91 |
3249 | 4452 | 4.278419 | ACTTGGTAAAACATCCAGTGCTTC | 59.722 | 41.667 | 0.00 | 0.00 | 35.05 | 3.86 |
3250 | 4453 | 4.098914 | TGGTAAAACATCCAGTGCTTCT | 57.901 | 40.909 | 0.00 | 0.00 | 0.00 | 2.85 |
3251 | 4454 | 3.820467 | TGGTAAAACATCCAGTGCTTCTG | 59.180 | 43.478 | 3.18 | 3.18 | 43.27 | 3.02 |
3252 | 4455 | 4.072131 | GGTAAAACATCCAGTGCTTCTGA | 58.928 | 43.478 | 10.22 | 0.00 | 46.27 | 3.27 |
3253 | 4456 | 4.518970 | GGTAAAACATCCAGTGCTTCTGAA | 59.481 | 41.667 | 10.22 | 0.00 | 46.27 | 3.02 |
3254 | 4457 | 4.843220 | AAAACATCCAGTGCTTCTGAAG | 57.157 | 40.909 | 13.02 | 13.02 | 46.27 | 3.02 |
3293 | 4546 | 1.000896 | CCCAAGAAGCCATCCGGTT | 60.001 | 57.895 | 0.00 | 0.00 | 33.99 | 4.44 |
3326 | 4591 | 1.164041 | AAGTCGTTGGCTTCCGGTTG | 61.164 | 55.000 | 0.00 | 0.00 | 0.00 | 3.77 |
3340 | 4605 | 1.489881 | CGGTTGCTTTGCAGTTTGCC | 61.490 | 55.000 | 0.00 | 0.00 | 44.23 | 4.52 |
3353 | 4618 | 3.088532 | CAGTTTGCCCCACTTGCTATTA | 58.911 | 45.455 | 0.00 | 0.00 | 0.00 | 0.98 |
3354 | 4619 | 3.129287 | CAGTTTGCCCCACTTGCTATTAG | 59.871 | 47.826 | 0.00 | 0.00 | 0.00 | 1.73 |
3355 | 4620 | 3.089284 | GTTTGCCCCACTTGCTATTAGT | 58.911 | 45.455 | 0.00 | 0.00 | 0.00 | 2.24 |
3356 | 4621 | 2.710096 | TGCCCCACTTGCTATTAGTC | 57.290 | 50.000 | 0.00 | 0.00 | 0.00 | 2.59 |
3357 | 4622 | 2.196595 | TGCCCCACTTGCTATTAGTCT | 58.803 | 47.619 | 0.00 | 0.00 | 0.00 | 3.24 |
3421 | 4691 | 7.309012 | GGAATTCTAAAACCTCTTTAAACGCCT | 60.309 | 37.037 | 5.23 | 0.00 | 0.00 | 5.52 |
3422 | 4692 | 8.625786 | AATTCTAAAACCTCTTTAAACGCCTA | 57.374 | 30.769 | 0.00 | 0.00 | 0.00 | 3.93 |
3463 | 4734 | 7.099764 | AGCGATTCCCATGTAATATAAGAGTG | 58.900 | 38.462 | 0.00 | 0.00 | 0.00 | 3.51 |
3498 | 4769 | 2.552315 | ACTTGCACCATAGAAAACACCG | 59.448 | 45.455 | 0.00 | 0.00 | 0.00 | 4.94 |
3499 | 4770 | 2.552599 | TGCACCATAGAAAACACCGA | 57.447 | 45.000 | 0.00 | 0.00 | 0.00 | 4.69 |
3562 | 4834 | 1.135315 | CAAAGACCAATCGCAGCGG | 59.865 | 57.895 | 16.42 | 0.32 | 0.00 | 5.52 |
3567 | 4839 | 3.853330 | CCAATCGCAGCGGTCGTG | 61.853 | 66.667 | 16.42 | 3.52 | 0.00 | 4.35 |
3580 | 4854 | 5.486706 | CAGCGGTCGTGTATATAACAAAAC | 58.513 | 41.667 | 0.00 | 0.00 | 40.63 | 2.43 |
3635 | 4909 | 2.203584 | AGGAGCCAGGAGTTGAATCAT | 58.796 | 47.619 | 0.00 | 0.00 | 0.00 | 2.45 |
3636 | 4910 | 2.579860 | AGGAGCCAGGAGTTGAATCATT | 59.420 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
3651 | 4925 | 1.138247 | CATTTTGAGCTCCTGCGCC | 59.862 | 57.895 | 12.15 | 0.00 | 45.42 | 6.53 |
3691 | 4971 | 1.909376 | CAAAGATGCAGCATCACAGC | 58.091 | 50.000 | 32.41 | 10.26 | 42.72 | 4.40 |
3698 | 4978 | 2.750637 | AGCATCACAGCAGCCTGC | 60.751 | 61.111 | 9.13 | 9.13 | 45.46 | 4.85 |
3709 | 4989 | 1.449246 | CAGCCTGCTGTGCTAGACC | 60.449 | 63.158 | 10.97 | 0.00 | 36.81 | 3.85 |
3735 | 5015 | 1.589196 | GAGCGTGGTAGCATCGGAC | 60.589 | 63.158 | 15.22 | 3.88 | 40.15 | 4.79 |
3977 | 5266 | 7.038445 | TCAGTCATCTTCTCTTCTTTCATTCCT | 60.038 | 37.037 | 0.00 | 0.00 | 0.00 | 3.36 |
3978 | 5267 | 7.278424 | CAGTCATCTTCTCTTCTTTCATTCCTC | 59.722 | 40.741 | 0.00 | 0.00 | 0.00 | 3.71 |
3979 | 5268 | 6.538381 | GTCATCTTCTCTTCTTTCATTCCTCC | 59.462 | 42.308 | 0.00 | 0.00 | 0.00 | 4.30 |
3980 | 5269 | 6.214208 | TCATCTTCTCTTCTTTCATTCCTCCA | 59.786 | 38.462 | 0.00 | 0.00 | 0.00 | 3.86 |
3982 | 5271 | 6.648192 | TCTTCTCTTCTTTCATTCCTCCATC | 58.352 | 40.000 | 0.00 | 0.00 | 0.00 | 3.51 |
3984 | 5273 | 7.621285 | TCTTCTCTTCTTTCATTCCTCCATCTA | 59.379 | 37.037 | 0.00 | 0.00 | 0.00 | 1.98 |
3985 | 5274 | 7.927683 | TCTCTTCTTTCATTCCTCCATCTAT | 57.072 | 36.000 | 0.00 | 0.00 | 0.00 | 1.98 |
3986 | 5275 | 7.733969 | TCTCTTCTTTCATTCCTCCATCTATG | 58.266 | 38.462 | 0.00 | 0.00 | 0.00 | 2.23 |
3988 | 5277 | 7.865820 | TCTTCTTTCATTCCTCCATCTATGTT | 58.134 | 34.615 | 0.00 | 0.00 | 0.00 | 2.71 |
3994 | 5283 | 5.072329 | TCATTCCTCCATCTATGTTTCCTCC | 59.928 | 44.000 | 0.00 | 0.00 | 0.00 | 4.30 |
3995 | 5284 | 3.318313 | TCCTCCATCTATGTTTCCTCCC | 58.682 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
3996 | 5285 | 3.051032 | TCCTCCATCTATGTTTCCTCCCT | 60.051 | 47.826 | 0.00 | 0.00 | 0.00 | 4.20 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 1.635663 | CCGTTGATGCCCGAGACAAC | 61.636 | 60.000 | 0.00 | 0.00 | 39.08 | 3.32 |
2 | 3 | 2.264480 | CCGTTGATGCCCGAGACA | 59.736 | 61.111 | 0.00 | 0.00 | 0.00 | 3.41 |
28 | 29 | 0.744414 | ACATGGAAATGGCGACCTCG | 60.744 | 55.000 | 0.00 | 0.00 | 43.27 | 4.63 |
29 | 30 | 0.734889 | CACATGGAAATGGCGACCTC | 59.265 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
30 | 31 | 0.680921 | CCACATGGAAATGGCGACCT | 60.681 | 55.000 | 0.00 | 0.00 | 37.39 | 3.85 |
31 | 32 | 0.965363 | ACCACATGGAAATGGCGACC | 60.965 | 55.000 | 4.53 | 0.00 | 39.84 | 4.79 |
32 | 33 | 0.451783 | GACCACATGGAAATGGCGAC | 59.548 | 55.000 | 4.53 | 0.00 | 39.84 | 5.19 |
33 | 34 | 1.024046 | CGACCACATGGAAATGGCGA | 61.024 | 55.000 | 4.53 | 0.00 | 39.84 | 5.54 |
34 | 35 | 1.429021 | CGACCACATGGAAATGGCG | 59.571 | 57.895 | 4.53 | 0.49 | 39.84 | 5.69 |
35 | 36 | 1.139520 | GCGACCACATGGAAATGGC | 59.860 | 57.895 | 4.53 | 0.00 | 39.84 | 4.40 |
36 | 37 | 0.452987 | CAGCGACCACATGGAAATGG | 59.547 | 55.000 | 4.53 | 0.00 | 42.13 | 3.16 |
37 | 38 | 0.179156 | GCAGCGACCACATGGAAATG | 60.179 | 55.000 | 4.53 | 0.00 | 38.94 | 2.32 |
38 | 39 | 0.322816 | AGCAGCGACCACATGGAAAT | 60.323 | 50.000 | 4.53 | 0.00 | 38.94 | 2.17 |
39 | 40 | 0.955428 | GAGCAGCGACCACATGGAAA | 60.955 | 55.000 | 4.53 | 0.00 | 38.94 | 3.13 |
40 | 41 | 1.375908 | GAGCAGCGACCACATGGAA | 60.376 | 57.895 | 4.53 | 0.00 | 38.94 | 3.53 |
41 | 42 | 2.265739 | GAGCAGCGACCACATGGA | 59.734 | 61.111 | 4.53 | 0.00 | 38.94 | 3.41 |
42 | 43 | 2.821366 | GGAGCAGCGACCACATGG | 60.821 | 66.667 | 0.00 | 0.00 | 42.17 | 3.66 |
43 | 44 | 1.642037 | CTTGGAGCAGCGACCACATG | 61.642 | 60.000 | 12.76 | 0.00 | 35.81 | 3.21 |
44 | 45 | 1.376424 | CTTGGAGCAGCGACCACAT | 60.376 | 57.895 | 12.76 | 0.00 | 35.81 | 3.21 |
45 | 46 | 2.031012 | CTTGGAGCAGCGACCACA | 59.969 | 61.111 | 12.76 | 5.53 | 35.81 | 4.17 |
46 | 47 | 3.426568 | GCTTGGAGCAGCGACCAC | 61.427 | 66.667 | 12.76 | 1.33 | 41.89 | 4.16 |
47 | 48 | 3.630013 | AGCTTGGAGCAGCGACCA | 61.630 | 61.111 | 9.75 | 9.75 | 45.56 | 4.02 |
48 | 49 | 3.123620 | CAGCTTGGAGCAGCGACC | 61.124 | 66.667 | 2.47 | 4.96 | 45.56 | 4.79 |
49 | 50 | 3.123620 | CCAGCTTGGAGCAGCGAC | 61.124 | 66.667 | 2.47 | 0.00 | 45.56 | 5.19 |
50 | 51 | 3.630013 | ACCAGCTTGGAGCAGCGA | 61.630 | 61.111 | 8.91 | 0.00 | 45.56 | 4.93 |
51 | 52 | 3.429141 | CACCAGCTTGGAGCAGCG | 61.429 | 66.667 | 8.91 | 0.00 | 45.56 | 5.18 |
52 | 53 | 3.060615 | CCACCAGCTTGGAGCAGC | 61.061 | 66.667 | 8.91 | 0.00 | 45.56 | 5.25 |
53 | 54 | 3.060615 | GCCACCAGCTTGGAGCAG | 61.061 | 66.667 | 8.71 | 0.00 | 45.56 | 4.24 |
82 | 83 | 3.842923 | AGGATCCCGTGCTCAGCG | 61.843 | 66.667 | 8.55 | 0.00 | 0.00 | 5.18 |
83 | 84 | 2.202987 | CAGGATCCCGTGCTCAGC | 60.203 | 66.667 | 8.55 | 0.00 | 0.00 | 4.26 |
103 | 104 | 4.162690 | AGATCCCGGCCTCGTTGC | 62.163 | 66.667 | 0.00 | 0.00 | 33.95 | 4.17 |
104 | 105 | 2.107141 | GAGATCCCGGCCTCGTTG | 59.893 | 66.667 | 0.00 | 0.00 | 33.95 | 4.10 |
105 | 106 | 3.155167 | GGAGATCCCGGCCTCGTT | 61.155 | 66.667 | 0.00 | 0.00 | 33.95 | 3.85 |
117 | 118 | 0.896019 | CCGCCTACAGATCCGGAGAT | 60.896 | 60.000 | 11.34 | 0.00 | 43.20 | 2.75 |
118 | 119 | 1.528542 | CCGCCTACAGATCCGGAGA | 60.529 | 63.158 | 11.34 | 0.00 | 43.20 | 3.71 |
119 | 120 | 1.528542 | TCCGCCTACAGATCCGGAG | 60.529 | 63.158 | 11.34 | 0.00 | 44.13 | 4.63 |
120 | 121 | 1.528542 | CTCCGCCTACAGATCCGGA | 60.529 | 63.158 | 6.61 | 6.61 | 46.50 | 5.14 |
121 | 122 | 2.565645 | CCTCCGCCTACAGATCCGG | 61.566 | 68.421 | 0.00 | 0.00 | 41.97 | 5.14 |
122 | 123 | 1.519751 | CTCCTCCGCCTACAGATCCG | 61.520 | 65.000 | 0.00 | 0.00 | 0.00 | 4.18 |
123 | 124 | 1.182385 | CCTCCTCCGCCTACAGATCC | 61.182 | 65.000 | 0.00 | 0.00 | 0.00 | 3.36 |
124 | 125 | 1.182385 | CCCTCCTCCGCCTACAGATC | 61.182 | 65.000 | 0.00 | 0.00 | 0.00 | 2.75 |
125 | 126 | 1.152440 | CCCTCCTCCGCCTACAGAT | 60.152 | 63.158 | 0.00 | 0.00 | 0.00 | 2.90 |
126 | 127 | 2.279073 | CCCTCCTCCGCCTACAGA | 59.721 | 66.667 | 0.00 | 0.00 | 0.00 | 3.41 |
127 | 128 | 2.664835 | ATCCCCTCCTCCGCCTACAG | 62.665 | 65.000 | 0.00 | 0.00 | 0.00 | 2.74 |
128 | 129 | 2.658321 | GATCCCCTCCTCCGCCTACA | 62.658 | 65.000 | 0.00 | 0.00 | 0.00 | 2.74 |
129 | 130 | 1.909287 | GATCCCCTCCTCCGCCTAC | 60.909 | 68.421 | 0.00 | 0.00 | 0.00 | 3.18 |
130 | 131 | 2.526628 | GATCCCCTCCTCCGCCTA | 59.473 | 66.667 | 0.00 | 0.00 | 0.00 | 3.93 |
131 | 132 | 4.565850 | GGATCCCCTCCTCCGCCT | 62.566 | 72.222 | 0.00 | 0.00 | 41.29 | 5.52 |
192 | 193 | 2.809601 | CTCGAACCCTCAACGCCG | 60.810 | 66.667 | 0.00 | 0.00 | 0.00 | 6.46 |
193 | 194 | 2.027625 | CACTCGAACCCTCAACGCC | 61.028 | 63.158 | 0.00 | 0.00 | 0.00 | 5.68 |
194 | 195 | 2.027625 | CCACTCGAACCCTCAACGC | 61.028 | 63.158 | 0.00 | 0.00 | 0.00 | 4.84 |
195 | 196 | 1.374252 | CCCACTCGAACCCTCAACG | 60.374 | 63.158 | 0.00 | 0.00 | 0.00 | 4.10 |
196 | 197 | 0.613777 | ATCCCACTCGAACCCTCAAC | 59.386 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
197 | 198 | 2.108168 | CTATCCCACTCGAACCCTCAA | 58.892 | 52.381 | 0.00 | 0.00 | 0.00 | 3.02 |
198 | 199 | 1.006758 | ACTATCCCACTCGAACCCTCA | 59.993 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
199 | 200 | 1.409427 | CACTATCCCACTCGAACCCTC | 59.591 | 57.143 | 0.00 | 0.00 | 0.00 | 4.30 |
200 | 201 | 1.486211 | CACTATCCCACTCGAACCCT | 58.514 | 55.000 | 0.00 | 0.00 | 0.00 | 4.34 |
201 | 202 | 0.464452 | CCACTATCCCACTCGAACCC | 59.536 | 60.000 | 0.00 | 0.00 | 0.00 | 4.11 |
202 | 203 | 1.134788 | CACCACTATCCCACTCGAACC | 60.135 | 57.143 | 0.00 | 0.00 | 0.00 | 3.62 |
203 | 204 | 1.134788 | CCACCACTATCCCACTCGAAC | 60.135 | 57.143 | 0.00 | 0.00 | 0.00 | 3.95 |
204 | 205 | 1.191535 | CCACCACTATCCCACTCGAA | 58.808 | 55.000 | 0.00 | 0.00 | 0.00 | 3.71 |
205 | 206 | 0.686441 | CCCACCACTATCCCACTCGA | 60.686 | 60.000 | 0.00 | 0.00 | 0.00 | 4.04 |
206 | 207 | 1.823295 | CCCACCACTATCCCACTCG | 59.177 | 63.158 | 0.00 | 0.00 | 0.00 | 4.18 |
207 | 208 | 1.527370 | GCCCACCACTATCCCACTC | 59.473 | 63.158 | 0.00 | 0.00 | 0.00 | 3.51 |
208 | 209 | 2.367202 | CGCCCACCACTATCCCACT | 61.367 | 63.158 | 0.00 | 0.00 | 0.00 | 4.00 |
209 | 210 | 2.189521 | CGCCCACCACTATCCCAC | 59.810 | 66.667 | 0.00 | 0.00 | 0.00 | 4.61 |
210 | 211 | 2.285069 | ACGCCCACCACTATCCCA | 60.285 | 61.111 | 0.00 | 0.00 | 0.00 | 4.37 |
211 | 212 | 1.906105 | TTCACGCCCACCACTATCCC | 61.906 | 60.000 | 0.00 | 0.00 | 0.00 | 3.85 |
212 | 213 | 0.462047 | CTTCACGCCCACCACTATCC | 60.462 | 60.000 | 0.00 | 0.00 | 0.00 | 2.59 |
213 | 214 | 0.462047 | CCTTCACGCCCACCACTATC | 60.462 | 60.000 | 0.00 | 0.00 | 0.00 | 2.08 |
214 | 215 | 0.907704 | TCCTTCACGCCCACCACTAT | 60.908 | 55.000 | 0.00 | 0.00 | 0.00 | 2.12 |
215 | 216 | 1.534476 | TCCTTCACGCCCACCACTA | 60.534 | 57.895 | 0.00 | 0.00 | 0.00 | 2.74 |
216 | 217 | 2.847234 | TCCTTCACGCCCACCACT | 60.847 | 61.111 | 0.00 | 0.00 | 0.00 | 4.00 |
217 | 218 | 2.358737 | CTCCTTCACGCCCACCAC | 60.359 | 66.667 | 0.00 | 0.00 | 0.00 | 4.16 |
218 | 219 | 3.636231 | CCTCCTTCACGCCCACCA | 61.636 | 66.667 | 0.00 | 0.00 | 0.00 | 4.17 |
219 | 220 | 2.804828 | CTTCCTCCTTCACGCCCACC | 62.805 | 65.000 | 0.00 | 0.00 | 0.00 | 4.61 |
220 | 221 | 1.376037 | CTTCCTCCTTCACGCCCAC | 60.376 | 63.158 | 0.00 | 0.00 | 0.00 | 4.61 |
221 | 222 | 2.592993 | CCTTCCTCCTTCACGCCCA | 61.593 | 63.158 | 0.00 | 0.00 | 0.00 | 5.36 |
222 | 223 | 2.245438 | CTCCTTCCTCCTTCACGCCC | 62.245 | 65.000 | 0.00 | 0.00 | 0.00 | 6.13 |
223 | 224 | 1.219393 | CTCCTTCCTCCTTCACGCC | 59.781 | 63.158 | 0.00 | 0.00 | 0.00 | 5.68 |
224 | 225 | 1.448717 | GCTCCTTCCTCCTTCACGC | 60.449 | 63.158 | 0.00 | 0.00 | 0.00 | 5.34 |
225 | 226 | 0.108424 | CTGCTCCTTCCTCCTTCACG | 60.108 | 60.000 | 0.00 | 0.00 | 0.00 | 4.35 |
226 | 227 | 1.206849 | CTCTGCTCCTTCCTCCTTCAC | 59.793 | 57.143 | 0.00 | 0.00 | 0.00 | 3.18 |
227 | 228 | 1.566211 | CTCTGCTCCTTCCTCCTTCA | 58.434 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
228 | 229 | 0.829990 | CCTCTGCTCCTTCCTCCTTC | 59.170 | 60.000 | 0.00 | 0.00 | 0.00 | 3.46 |
229 | 230 | 1.271127 | GCCTCTGCTCCTTCCTCCTT | 61.271 | 60.000 | 0.00 | 0.00 | 33.53 | 3.36 |
230 | 231 | 1.688884 | GCCTCTGCTCCTTCCTCCT | 60.689 | 63.158 | 0.00 | 0.00 | 33.53 | 3.69 |
231 | 232 | 1.557269 | TTGCCTCTGCTCCTTCCTCC | 61.557 | 60.000 | 0.00 | 0.00 | 38.71 | 4.30 |
232 | 233 | 0.326264 | TTTGCCTCTGCTCCTTCCTC | 59.674 | 55.000 | 0.00 | 0.00 | 38.71 | 3.71 |
233 | 234 | 0.773644 | TTTTGCCTCTGCTCCTTCCT | 59.226 | 50.000 | 0.00 | 0.00 | 38.71 | 3.36 |
234 | 235 | 0.884514 | GTTTTGCCTCTGCTCCTTCC | 59.115 | 55.000 | 0.00 | 0.00 | 38.71 | 3.46 |
235 | 236 | 1.538950 | CAGTTTTGCCTCTGCTCCTTC | 59.461 | 52.381 | 0.00 | 0.00 | 38.71 | 3.46 |
236 | 237 | 1.133668 | ACAGTTTTGCCTCTGCTCCTT | 60.134 | 47.619 | 0.00 | 0.00 | 38.71 | 3.36 |
237 | 238 | 0.475906 | ACAGTTTTGCCTCTGCTCCT | 59.524 | 50.000 | 0.00 | 0.00 | 38.71 | 3.69 |
238 | 239 | 1.268079 | GAACAGTTTTGCCTCTGCTCC | 59.732 | 52.381 | 0.00 | 0.00 | 38.71 | 4.70 |
239 | 240 | 1.069636 | CGAACAGTTTTGCCTCTGCTC | 60.070 | 52.381 | 0.00 | 0.00 | 38.71 | 4.26 |
240 | 241 | 0.947244 | CGAACAGTTTTGCCTCTGCT | 59.053 | 50.000 | 0.00 | 0.00 | 38.71 | 4.24 |
241 | 242 | 0.944386 | TCGAACAGTTTTGCCTCTGC | 59.056 | 50.000 | 0.00 | 0.00 | 35.37 | 4.26 |
242 | 243 | 2.478134 | CTCTCGAACAGTTTTGCCTCTG | 59.522 | 50.000 | 0.00 | 0.00 | 37.65 | 3.35 |
243 | 244 | 2.365617 | TCTCTCGAACAGTTTTGCCTCT | 59.634 | 45.455 | 0.00 | 0.00 | 0.00 | 3.69 |
244 | 245 | 2.734079 | CTCTCTCGAACAGTTTTGCCTC | 59.266 | 50.000 | 0.00 | 0.00 | 0.00 | 4.70 |
245 | 246 | 2.365617 | TCTCTCTCGAACAGTTTTGCCT | 59.634 | 45.455 | 0.00 | 0.00 | 0.00 | 4.75 |
246 | 247 | 2.734079 | CTCTCTCTCGAACAGTTTTGCC | 59.266 | 50.000 | 0.00 | 0.00 | 0.00 | 4.52 |
247 | 248 | 2.734079 | CCTCTCTCTCGAACAGTTTTGC | 59.266 | 50.000 | 0.00 | 0.00 | 0.00 | 3.68 |
248 | 249 | 3.321497 | CCCTCTCTCTCGAACAGTTTTG | 58.679 | 50.000 | 0.00 | 0.00 | 0.00 | 2.44 |
249 | 250 | 2.289133 | GCCCTCTCTCTCGAACAGTTTT | 60.289 | 50.000 | 0.00 | 0.00 | 0.00 | 2.43 |
250 | 251 | 1.273886 | GCCCTCTCTCTCGAACAGTTT | 59.726 | 52.381 | 0.00 | 0.00 | 0.00 | 2.66 |
251 | 252 | 0.892063 | GCCCTCTCTCTCGAACAGTT | 59.108 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
252 | 253 | 0.039035 | AGCCCTCTCTCTCGAACAGT | 59.961 | 55.000 | 0.00 | 0.00 | 0.00 | 3.55 |
253 | 254 | 0.455410 | CAGCCCTCTCTCTCGAACAG | 59.545 | 60.000 | 0.00 | 0.00 | 0.00 | 3.16 |
254 | 255 | 1.599606 | GCAGCCCTCTCTCTCGAACA | 61.600 | 60.000 | 0.00 | 0.00 | 0.00 | 3.18 |
255 | 256 | 1.140804 | GCAGCCCTCTCTCTCGAAC | 59.859 | 63.158 | 0.00 | 0.00 | 0.00 | 3.95 |
256 | 257 | 1.000270 | AGCAGCCCTCTCTCTCGAA | 60.000 | 57.895 | 0.00 | 0.00 | 0.00 | 3.71 |
257 | 258 | 1.752310 | CAGCAGCCCTCTCTCTCGA | 60.752 | 63.158 | 0.00 | 0.00 | 0.00 | 4.04 |
258 | 259 | 2.784356 | CCAGCAGCCCTCTCTCTCG | 61.784 | 68.421 | 0.00 | 0.00 | 0.00 | 4.04 |
259 | 260 | 3.092780 | GCCAGCAGCCCTCTCTCTC | 62.093 | 68.421 | 0.00 | 0.00 | 34.35 | 3.20 |
260 | 261 | 3.082701 | GCCAGCAGCCCTCTCTCT | 61.083 | 66.667 | 0.00 | 0.00 | 34.35 | 3.10 |
261 | 262 | 2.668120 | AAGCCAGCAGCCCTCTCTC | 61.668 | 63.158 | 0.00 | 0.00 | 45.47 | 3.20 |
262 | 263 | 2.610233 | AAGCCAGCAGCCCTCTCT | 60.610 | 61.111 | 0.00 | 0.00 | 45.47 | 3.10 |
263 | 264 | 2.438075 | CAAGCCAGCAGCCCTCTC | 60.438 | 66.667 | 0.00 | 0.00 | 45.47 | 3.20 |
264 | 265 | 2.761304 | GAACAAGCCAGCAGCCCTCT | 62.761 | 60.000 | 0.00 | 0.00 | 45.47 | 3.69 |
265 | 266 | 2.282745 | AACAAGCCAGCAGCCCTC | 60.283 | 61.111 | 0.00 | 0.00 | 45.47 | 4.30 |
266 | 267 | 2.282745 | GAACAAGCCAGCAGCCCT | 60.283 | 61.111 | 0.00 | 0.00 | 45.47 | 5.19 |
267 | 268 | 2.282745 | AGAACAAGCCAGCAGCCC | 60.283 | 61.111 | 0.00 | 0.00 | 45.47 | 5.19 |
268 | 269 | 1.900498 | ACAGAACAAGCCAGCAGCC | 60.900 | 57.895 | 0.00 | 0.00 | 45.47 | 4.85 |
269 | 270 | 1.285023 | CACAGAACAAGCCAGCAGC | 59.715 | 57.895 | 0.00 | 0.00 | 44.25 | 5.25 |
270 | 271 | 1.285023 | GCACAGAACAAGCCAGCAG | 59.715 | 57.895 | 0.00 | 0.00 | 0.00 | 4.24 |
271 | 272 | 2.545596 | CGCACAGAACAAGCCAGCA | 61.546 | 57.895 | 0.00 | 0.00 | 0.00 | 4.41 |
272 | 273 | 2.253452 | CGCACAGAACAAGCCAGC | 59.747 | 61.111 | 0.00 | 0.00 | 0.00 | 4.85 |
273 | 274 | 2.253452 | GCGCACAGAACAAGCCAG | 59.747 | 61.111 | 0.30 | 0.00 | 0.00 | 4.85 |
274 | 275 | 3.286751 | GGCGCACAGAACAAGCCA | 61.287 | 61.111 | 10.83 | 0.00 | 46.48 | 4.75 |
276 | 277 | 0.730494 | GATTGGCGCACAGAACAAGC | 60.730 | 55.000 | 10.83 | 1.44 | 0.00 | 4.01 |
277 | 278 | 0.109597 | GGATTGGCGCACAGAACAAG | 60.110 | 55.000 | 10.83 | 0.00 | 0.00 | 3.16 |
278 | 279 | 0.821301 | TGGATTGGCGCACAGAACAA | 60.821 | 50.000 | 10.83 | 2.88 | 0.00 | 2.83 |
279 | 280 | 1.228094 | TGGATTGGCGCACAGAACA | 60.228 | 52.632 | 10.83 | 0.00 | 0.00 | 3.18 |
280 | 281 | 1.503542 | CTGGATTGGCGCACAGAAC | 59.496 | 57.895 | 10.83 | 0.00 | 32.86 | 3.01 |
281 | 282 | 2.334946 | GCTGGATTGGCGCACAGAA | 61.335 | 57.895 | 10.83 | 0.00 | 32.86 | 3.02 |
282 | 283 | 2.747460 | GCTGGATTGGCGCACAGA | 60.747 | 61.111 | 10.83 | 0.00 | 32.86 | 3.41 |
283 | 284 | 3.818787 | GGCTGGATTGGCGCACAG | 61.819 | 66.667 | 10.83 | 10.18 | 0.00 | 3.66 |
287 | 288 | 3.599704 | GATGGGCTGGATTGGCGC | 61.600 | 66.667 | 0.00 | 0.00 | 41.90 | 6.53 |
288 | 289 | 2.908940 | GGATGGGCTGGATTGGCG | 60.909 | 66.667 | 0.00 | 0.00 | 0.00 | 5.69 |
289 | 290 | 2.522680 | GGGATGGGCTGGATTGGC | 60.523 | 66.667 | 0.00 | 0.00 | 0.00 | 4.52 |
290 | 291 | 0.541296 | GATGGGATGGGCTGGATTGG | 60.541 | 60.000 | 0.00 | 0.00 | 0.00 | 3.16 |
291 | 292 | 0.541296 | GGATGGGATGGGCTGGATTG | 60.541 | 60.000 | 0.00 | 0.00 | 0.00 | 2.67 |
292 | 293 | 1.733387 | GGGATGGGATGGGCTGGATT | 61.733 | 60.000 | 0.00 | 0.00 | 0.00 | 3.01 |
293 | 294 | 2.165656 | GGGATGGGATGGGCTGGAT | 61.166 | 63.158 | 0.00 | 0.00 | 0.00 | 3.41 |
294 | 295 | 2.778278 | GGGATGGGATGGGCTGGA | 60.778 | 66.667 | 0.00 | 0.00 | 0.00 | 3.86 |
295 | 296 | 3.105248 | TGGGATGGGATGGGCTGG | 61.105 | 66.667 | 0.00 | 0.00 | 0.00 | 4.85 |
296 | 297 | 2.519441 | CTGGGATGGGATGGGCTG | 59.481 | 66.667 | 0.00 | 0.00 | 0.00 | 4.85 |
297 | 298 | 3.505773 | GCTGGGATGGGATGGGCT | 61.506 | 66.667 | 0.00 | 0.00 | 0.00 | 5.19 |
298 | 299 | 4.610526 | GGCTGGGATGGGATGGGC | 62.611 | 72.222 | 0.00 | 0.00 | 0.00 | 5.36 |
460 | 463 | 3.423154 | GGGCGCGACTTCAGTTGG | 61.423 | 66.667 | 13.91 | 0.00 | 0.00 | 3.77 |
587 | 602 | 0.652592 | CTGTTAGCTTCCATTCGCCG | 59.347 | 55.000 | 0.00 | 0.00 | 0.00 | 6.46 |
745 | 764 | 4.828829 | ACGATACAACAACTCTTAAGGGG | 58.171 | 43.478 | 7.40 | 1.22 | 0.00 | 4.79 |
753 | 772 | 3.318017 | ACTGCAGACGATACAACAACTC | 58.682 | 45.455 | 23.35 | 0.00 | 0.00 | 3.01 |
771 | 793 | 6.995511 | TTAATTTACCAAAGATCGGGACTG | 57.004 | 37.500 | 7.92 | 0.00 | 0.00 | 3.51 |
817 | 846 | 6.940867 | AGTAAATCCTTTCAGTCCCTTTGTAC | 59.059 | 38.462 | 0.00 | 0.00 | 0.00 | 2.90 |
890 | 924 | 5.359194 | ACACAAGATACAACTATCCAGGG | 57.641 | 43.478 | 0.00 | 0.00 | 30.40 | 4.45 |
978 | 1018 | 3.132925 | CCCCAACAAGAATTTGCACTTG | 58.867 | 45.455 | 11.97 | 11.97 | 45.85 | 3.16 |
1050 | 1090 | 6.379988 | AGACATACTCTTCTTCTTCTTCCTCC | 59.620 | 42.308 | 0.00 | 0.00 | 0.00 | 4.30 |
1161 | 1201 | 3.758554 | CCTTTTGTACCAGTAAGCTGCAT | 59.241 | 43.478 | 1.02 | 0.00 | 41.26 | 3.96 |
1235 | 1277 | 7.816640 | TCAATATGACAAAAGTGCTTAAGGAC | 58.183 | 34.615 | 18.57 | 18.57 | 36.57 | 3.85 |
1345 | 1399 | 5.067674 | ACTGCTTCATCTTAGTGCAAACAAA | 59.932 | 36.000 | 0.00 | 0.00 | 33.07 | 2.83 |
1366 | 1429 | 9.416794 | CTTAGATAATCAGCACATAACCTACTG | 57.583 | 37.037 | 0.00 | 0.00 | 0.00 | 2.74 |
1367 | 1430 | 9.368416 | TCTTAGATAATCAGCACATAACCTACT | 57.632 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
1368 | 1431 | 9.632807 | CTCTTAGATAATCAGCACATAACCTAC | 57.367 | 37.037 | 0.00 | 0.00 | 0.00 | 3.18 |
1369 | 1432 | 9.588096 | TCTCTTAGATAATCAGCACATAACCTA | 57.412 | 33.333 | 0.00 | 0.00 | 0.00 | 3.08 |
1370 | 1433 | 8.484214 | TCTCTTAGATAATCAGCACATAACCT | 57.516 | 34.615 | 0.00 | 0.00 | 0.00 | 3.50 |
1371 | 1434 | 8.364142 | ACTCTCTTAGATAATCAGCACATAACC | 58.636 | 37.037 | 0.00 | 0.00 | 0.00 | 2.85 |
1372 | 1435 | 9.757227 | AACTCTCTTAGATAATCAGCACATAAC | 57.243 | 33.333 | 0.00 | 0.00 | 0.00 | 1.89 |
1415 | 1478 | 3.330701 | AGCCCTTTCATGTAAGAAGTGGA | 59.669 | 43.478 | 13.18 | 0.00 | 0.00 | 4.02 |
1534 | 1597 | 4.945246 | ACGAAACAGACATAGACACAACT | 58.055 | 39.130 | 0.00 | 0.00 | 0.00 | 3.16 |
1570 | 1633 | 6.019801 | CACTAAACGCATAACTACCTAGCTTG | 60.020 | 42.308 | 0.00 | 0.00 | 0.00 | 4.01 |
1573 | 1636 | 5.585390 | TCACTAAACGCATAACTACCTAGC | 58.415 | 41.667 | 0.00 | 0.00 | 0.00 | 3.42 |
1576 | 1639 | 5.163581 | ACGATCACTAAACGCATAACTACCT | 60.164 | 40.000 | 0.00 | 0.00 | 0.00 | 3.08 |
1598 | 1663 | 3.189287 | AGCTCAAATAAGCCAACAAGACG | 59.811 | 43.478 | 0.00 | 0.00 | 43.56 | 4.18 |
1614 | 1680 | 5.070001 | AGCAAAATTGTACAGGTAGCTCAA | 58.930 | 37.500 | 0.00 | 0.00 | 0.00 | 3.02 |
1784 | 1851 | 7.790782 | AAAAGAATAATGCCCCTTAACTTGA | 57.209 | 32.000 | 0.00 | 0.00 | 0.00 | 3.02 |
1878 | 1954 | 4.768968 | AGATGGCAGCCATATAAAACATCC | 59.231 | 41.667 | 27.75 | 10.44 | 45.26 | 3.51 |
2035 | 3159 | 5.192927 | TGGAGGCGATCAAACTTTATTCAT | 58.807 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
2062 | 3186 | 3.232720 | TGAACCCCAAGTAAAGTTCCC | 57.767 | 47.619 | 0.00 | 0.00 | 38.24 | 3.97 |
2096 | 3220 | 8.992349 | CCAGATAAATGGGTGTATCCAGATATA | 58.008 | 37.037 | 0.00 | 0.00 | 40.56 | 0.86 |
2135 | 3259 | 7.786030 | TCCAGACAGTCTCCTATTATGAAAAG | 58.214 | 38.462 | 0.00 | 0.00 | 0.00 | 2.27 |
2206 | 3332 | 9.628500 | AACCTTAGTTCCATCTATTTATTCACC | 57.372 | 33.333 | 0.00 | 0.00 | 0.00 | 4.02 |
2251 | 3377 | 7.129109 | TGTTAGTGCTAAAGCTATCACAAAC | 57.871 | 36.000 | 3.26 | 0.25 | 42.66 | 2.93 |
2492 | 3628 | 0.807496 | GCAGAGGGATGCAAACACTC | 59.193 | 55.000 | 15.69 | 15.69 | 45.77 | 3.51 |
2560 | 3696 | 6.056884 | TCAGGTTAATGTACAAAACTCGGTT | 58.943 | 36.000 | 18.53 | 2.74 | 0.00 | 4.44 |
2570 | 3706 | 5.722441 | TCACAGGGTATCAGGTTAATGTACA | 59.278 | 40.000 | 0.00 | 0.00 | 0.00 | 2.90 |
2607 | 3743 | 3.441572 | AGCATGGAAATCTGAAGGAAACG | 59.558 | 43.478 | 0.00 | 0.00 | 0.00 | 3.60 |
2648 | 3786 | 3.754965 | ACATGCTATGTGTGAACAAGGT | 58.245 | 40.909 | 0.00 | 0.00 | 43.01 | 3.50 |
2649 | 3787 | 4.771590 | AACATGCTATGTGTGAACAAGG | 57.228 | 40.909 | 0.00 | 0.00 | 44.07 | 3.61 |
2670 | 3812 | 4.939439 | GCCTTCCCGACAAGTTAGATAAAA | 59.061 | 41.667 | 0.00 | 0.00 | 0.00 | 1.52 |
2732 | 3874 | 4.752879 | TTGCACTAGGGTCGGCGC | 62.753 | 66.667 | 0.00 | 0.00 | 0.00 | 6.53 |
2733 | 3875 | 1.024579 | AAATTGCACTAGGGTCGGCG | 61.025 | 55.000 | 0.00 | 0.00 | 0.00 | 6.46 |
2735 | 3877 | 3.754323 | TGTAAAAATTGCACTAGGGTCGG | 59.246 | 43.478 | 0.00 | 0.00 | 0.00 | 4.79 |
2737 | 3879 | 5.335661 | CCACTGTAAAAATTGCACTAGGGTC | 60.336 | 44.000 | 0.00 | 0.00 | 0.00 | 4.46 |
2738 | 3880 | 4.522789 | CCACTGTAAAAATTGCACTAGGGT | 59.477 | 41.667 | 0.00 | 0.00 | 0.00 | 4.34 |
2744 | 3886 | 7.656707 | AATGAATCCACTGTAAAAATTGCAC | 57.343 | 32.000 | 0.00 | 0.00 | 0.00 | 4.57 |
2748 | 3890 | 8.907222 | AAGCAAATGAATCCACTGTAAAAATT | 57.093 | 26.923 | 0.00 | 0.00 | 0.00 | 1.82 |
2787 | 3929 | 1.340405 | TGGAGCATCTGGAAAGGAAGC | 60.340 | 52.381 | 0.00 | 0.00 | 33.73 | 3.86 |
2796 | 3938 | 0.890683 | GGTTTTGGTGGAGCATCTGG | 59.109 | 55.000 | 0.00 | 0.00 | 33.73 | 3.86 |
2813 | 3955 | 1.599047 | CGGCTCTCCATGAACAGGT | 59.401 | 57.895 | 0.00 | 0.00 | 0.00 | 4.00 |
2816 | 3958 | 2.268920 | GCCGGCTCTCCATGAACA | 59.731 | 61.111 | 22.15 | 0.00 | 0.00 | 3.18 |
2886 | 4028 | 2.040278 | TCAGATGTTTCACCTCCTTGGG | 59.960 | 50.000 | 0.00 | 0.00 | 41.11 | 4.12 |
2975 | 4117 | 4.351111 | AGTCAAAACTCCTTGTCCCTGTAT | 59.649 | 41.667 | 0.00 | 0.00 | 0.00 | 2.29 |
3007 | 4149 | 1.580845 | AAGGATCGCTTGCTGTGTGC | 61.581 | 55.000 | 0.00 | 0.00 | 43.25 | 4.57 |
3008 | 4150 | 0.877071 | AAAGGATCGCTTGCTGTGTG | 59.123 | 50.000 | 0.00 | 0.00 | 0.00 | 3.82 |
3009 | 4151 | 0.877071 | CAAAGGATCGCTTGCTGTGT | 59.123 | 50.000 | 0.00 | 0.00 | 0.00 | 3.72 |
3020 | 4194 | 2.428530 | GCATTCCAAGGGTCAAAGGATC | 59.571 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
3052 | 4226 | 8.150945 | TGCTAGTGGCTAATTAAGATTAAGGAG | 58.849 | 37.037 | 0.00 | 0.00 | 42.39 | 3.69 |
3053 | 4227 | 8.029782 | TGCTAGTGGCTAATTAAGATTAAGGA | 57.970 | 34.615 | 0.00 | 0.00 | 42.39 | 3.36 |
3054 | 4228 | 8.854614 | ATGCTAGTGGCTAATTAAGATTAAGG | 57.145 | 34.615 | 0.00 | 0.00 | 42.39 | 2.69 |
3069 | 4251 | 2.353208 | CGGGATAGAGAATGCTAGTGGC | 60.353 | 54.545 | 0.00 | 0.00 | 42.22 | 5.01 |
3098 | 4280 | 2.055310 | ATCATGCATCGCAACCGCTG | 62.055 | 55.000 | 0.00 | 0.00 | 43.62 | 5.18 |
3099 | 4281 | 1.378882 | AATCATGCATCGCAACCGCT | 61.379 | 50.000 | 0.00 | 0.00 | 43.62 | 5.52 |
3103 | 4285 | 0.317269 | CCGGAATCATGCATCGCAAC | 60.317 | 55.000 | 0.00 | 0.00 | 43.62 | 4.17 |
3126 | 4314 | 8.677300 | GCATACTTCATAGAGAGAGGATAAGAG | 58.323 | 40.741 | 0.00 | 0.00 | 0.00 | 2.85 |
3131 | 4319 | 6.209192 | CAGTGCATACTTCATAGAGAGAGGAT | 59.791 | 42.308 | 0.00 | 0.00 | 34.07 | 3.24 |
3140 | 4328 | 9.102757 | ACAAGATTAACAGTGCATACTTCATAG | 57.897 | 33.333 | 0.00 | 0.00 | 34.07 | 2.23 |
3142 | 4330 | 7.607607 | TCACAAGATTAACAGTGCATACTTCAT | 59.392 | 33.333 | 0.00 | 0.00 | 34.07 | 2.57 |
3147 | 4335 | 8.970691 | AATTTCACAAGATTAACAGTGCATAC | 57.029 | 30.769 | 0.00 | 0.00 | 32.25 | 2.39 |
3152 | 4340 | 7.140705 | TGCAGAATTTCACAAGATTAACAGTG | 58.859 | 34.615 | 0.00 | 0.00 | 0.00 | 3.66 |
3153 | 4341 | 7.275888 | TGCAGAATTTCACAAGATTAACAGT | 57.724 | 32.000 | 0.00 | 0.00 | 0.00 | 3.55 |
3156 | 4344 | 7.928908 | TGTTGCAGAATTTCACAAGATTAAC | 57.071 | 32.000 | 0.00 | 0.00 | 0.00 | 2.01 |
3158 | 4346 | 7.599621 | CCATTGTTGCAGAATTTCACAAGATTA | 59.400 | 33.333 | 4.40 | 0.00 | 0.00 | 1.75 |
3165 | 4368 | 4.874970 | ACTCCATTGTTGCAGAATTTCAC | 58.125 | 39.130 | 0.00 | 0.00 | 0.00 | 3.18 |
3187 | 4390 | 5.999205 | TTAGTTTACATACAGACCGGGAA | 57.001 | 39.130 | 6.32 | 0.00 | 0.00 | 3.97 |
3188 | 4391 | 5.682990 | GCATTAGTTTACATACAGACCGGGA | 60.683 | 44.000 | 6.32 | 0.00 | 0.00 | 5.14 |
3191 | 4394 | 5.276868 | GCTGCATTAGTTTACATACAGACCG | 60.277 | 44.000 | 0.00 | 0.00 | 0.00 | 4.79 |
3192 | 4395 | 5.817816 | AGCTGCATTAGTTTACATACAGACC | 59.182 | 40.000 | 1.02 | 0.00 | 0.00 | 3.85 |
3194 | 4397 | 6.758416 | CAGAGCTGCATTAGTTTACATACAGA | 59.242 | 38.462 | 1.02 | 0.00 | 0.00 | 3.41 |
3215 | 4418 | 6.385649 | TGTTTTACCAAGTTTTAGGCAGAG | 57.614 | 37.500 | 0.00 | 0.00 | 0.00 | 3.35 |
3216 | 4419 | 6.015772 | GGATGTTTTACCAAGTTTTAGGCAGA | 60.016 | 38.462 | 0.00 | 0.00 | 0.00 | 4.26 |
3217 | 4420 | 6.156519 | GGATGTTTTACCAAGTTTTAGGCAG | 58.843 | 40.000 | 0.00 | 0.00 | 0.00 | 4.85 |
3218 | 4421 | 5.598830 | TGGATGTTTTACCAAGTTTTAGGCA | 59.401 | 36.000 | 0.00 | 0.00 | 32.93 | 4.75 |
3219 | 4422 | 6.091718 | TGGATGTTTTACCAAGTTTTAGGC | 57.908 | 37.500 | 0.00 | 0.00 | 32.93 | 3.93 |
3220 | 4423 | 7.145323 | CACTGGATGTTTTACCAAGTTTTAGG | 58.855 | 38.462 | 0.00 | 0.00 | 35.67 | 2.69 |
3221 | 4424 | 6.640907 | GCACTGGATGTTTTACCAAGTTTTAG | 59.359 | 38.462 | 0.00 | 0.00 | 35.67 | 1.85 |
3222 | 4425 | 6.322712 | AGCACTGGATGTTTTACCAAGTTTTA | 59.677 | 34.615 | 0.00 | 0.00 | 35.67 | 1.52 |
3223 | 4426 | 5.128663 | AGCACTGGATGTTTTACCAAGTTTT | 59.871 | 36.000 | 0.00 | 0.00 | 35.67 | 2.43 |
3224 | 4427 | 4.649218 | AGCACTGGATGTTTTACCAAGTTT | 59.351 | 37.500 | 0.00 | 0.00 | 35.67 | 2.66 |
3225 | 4428 | 4.215109 | AGCACTGGATGTTTTACCAAGTT | 58.785 | 39.130 | 0.00 | 0.00 | 35.67 | 2.66 |
3226 | 4429 | 3.832527 | AGCACTGGATGTTTTACCAAGT | 58.167 | 40.909 | 0.00 | 0.00 | 35.67 | 3.16 |
3227 | 4430 | 4.520492 | AGAAGCACTGGATGTTTTACCAAG | 59.480 | 41.667 | 0.00 | 0.00 | 35.67 | 3.61 |
3228 | 4431 | 4.278170 | CAGAAGCACTGGATGTTTTACCAA | 59.722 | 41.667 | 3.48 | 0.00 | 42.39 | 3.67 |
3229 | 4432 | 3.820467 | CAGAAGCACTGGATGTTTTACCA | 59.180 | 43.478 | 3.48 | 0.00 | 42.39 | 3.25 |
3230 | 4433 | 4.072131 | TCAGAAGCACTGGATGTTTTACC | 58.928 | 43.478 | 10.23 | 0.00 | 45.76 | 2.85 |
3231 | 4434 | 5.689383 | TTCAGAAGCACTGGATGTTTTAC | 57.311 | 39.130 | 10.23 | 0.00 | 45.76 | 2.01 |
3232 | 4435 | 5.947228 | CTTCAGAAGCACTGGATGTTTTA | 57.053 | 39.130 | 10.23 | 0.00 | 45.76 | 1.52 |
3233 | 4436 | 4.843220 | CTTCAGAAGCACTGGATGTTTT | 57.157 | 40.909 | 10.23 | 0.00 | 45.76 | 2.43 |
3246 | 4449 | 1.093159 | GCACTGGATGGCTTCAGAAG | 58.907 | 55.000 | 5.72 | 5.72 | 35.20 | 2.85 |
3247 | 4450 | 0.694771 | AGCACTGGATGGCTTCAGAA | 59.305 | 50.000 | 2.60 | 0.00 | 36.92 | 3.02 |
3248 | 4451 | 0.694771 | AAGCACTGGATGGCTTCAGA | 59.305 | 50.000 | 2.60 | 0.00 | 46.82 | 3.27 |
3249 | 4452 | 3.261250 | AAGCACTGGATGGCTTCAG | 57.739 | 52.632 | 2.60 | 2.21 | 46.82 | 3.02 |
3272 | 4525 | 1.452108 | CGGATGGCTTCTTGGGTCC | 60.452 | 63.158 | 0.07 | 0.00 | 0.00 | 4.46 |
3293 | 4546 | 5.007332 | GCCAACGACTTTTTCTAACTCAAGA | 59.993 | 40.000 | 0.00 | 0.00 | 0.00 | 3.02 |
3340 | 4605 | 6.999272 | TCTAGACTAGACTAATAGCAAGTGGG | 59.001 | 42.308 | 8.17 | 0.00 | 0.00 | 4.61 |
3355 | 4620 | 3.607741 | CGTGAGGTTGGTCTAGACTAGA | 58.392 | 50.000 | 21.88 | 8.17 | 0.00 | 2.43 |
3356 | 4621 | 2.097791 | GCGTGAGGTTGGTCTAGACTAG | 59.902 | 54.545 | 21.88 | 2.81 | 0.00 | 2.57 |
3357 | 4622 | 2.089980 | GCGTGAGGTTGGTCTAGACTA | 58.910 | 52.381 | 21.88 | 14.08 | 0.00 | 2.59 |
3421 | 4691 | 3.483421 | TCGCTATCAAGATTCCGGTCTA | 58.517 | 45.455 | 0.00 | 0.00 | 0.00 | 2.59 |
3422 | 4692 | 2.307768 | TCGCTATCAAGATTCCGGTCT | 58.692 | 47.619 | 0.00 | 0.00 | 0.00 | 3.85 |
3511 | 4782 | 2.738521 | CCACGTTCACGGCAGGAG | 60.739 | 66.667 | 4.07 | 0.00 | 44.95 | 3.69 |
3562 | 4834 | 8.889849 | ATGCTTTGTTTTGTTATATACACGAC | 57.110 | 30.769 | 0.00 | 0.00 | 36.21 | 4.34 |
3580 | 4854 | 6.293626 | GCTTGGGTCTATGTATGTATGCTTTG | 60.294 | 42.308 | 0.00 | 0.00 | 0.00 | 2.77 |
3635 | 4909 | 3.049674 | CGGCGCAGGAGCTCAAAA | 61.050 | 61.111 | 17.19 | 0.00 | 39.10 | 2.44 |
3651 | 4925 | 2.649516 | CTTCTCTTCAGATCTAGCGCG | 58.350 | 52.381 | 0.00 | 0.00 | 0.00 | 6.86 |
3698 | 4978 | 1.895798 | TCAAGGACTGGTCTAGCACAG | 59.104 | 52.381 | 10.74 | 10.74 | 40.48 | 3.66 |
3709 | 4989 | 0.737715 | GCTACCACGCTCAAGGACTG | 60.738 | 60.000 | 0.00 | 0.00 | 0.00 | 3.51 |
3735 | 5015 | 0.823769 | TCATCCCCGTCATCTCCGAG | 60.824 | 60.000 | 0.00 | 0.00 | 0.00 | 4.63 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.