>input_sequence_39699
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-------------------------------------------------------------------------------A
TGGCAAAGGAAGCTGAGAAAGATAAACAAATTGCTGAGGAGGAGGAGGAGGAGGAAGAAGAAGAAGAGTATGTCTTGCTA
GAGTTAGATGATGTTCATTATTCCTGCATACAACCAAATGCCCCTTATATACTCTCTGTAAGTTGGTTTCATCTCACAGT
ATGCAGCT--TACTGGTACAAAAGGACATTAGGCTCTGTTGTAAATGTAATTAAGAAGATGTGGTGTCTCTAAATTGTCC
TTAAGCACTTTTGTCA------------TATTGATATATATAAAGAAAGAGTTCACTTTAGATTTGATTATATCAGAAAT
GTTTAAATGGCCAATAGAGTCCCAGAGCAAATTATTTTTTTGTTTGCACT--AAGATGAA-------GCAGTAGGTTATG
TGCTGATTATCTAAGAGAGTTCTTGCCATTAGTATGTTCCACTTCTTACATGAAAGGGCTATATATGTTTCTTGTGTTTG
GAGCAACCTTCCTTCAGATTTGTTTTTAGGTTGCCATAGTCAATGGATACCGTTATCAGATACAAATTCCTGTTCAAGTT
GTGTCTATGTCTGTTTCGTAGATTCACGGCGACAAGCTAGGTA--GTTATGCGTTTAGTGATCGTCTT-GTTGGCTTATT
TGAGCTACCTGTACAATTTTGCTTACCGCCTTTATGTGTAGTTCGCTAAGTTATTTGTAATCTTCTTTTTCAGGGTTTGG
ATACATTGACTCCTACCTTGGTAGTAGGTGATGGCCTGAAGATGGTGAGTATTATTCATGTTA-TGTTCGCTTTTGAAGA
CGTTTACTTGTCAAGTTAAGGGGCATTATTCTTTT-TTTTTTGCGGGGAGTTAAAGGGCACTATTCTATA--------GT
TGTTTGAAGTTTATCTTATTGAACTTTTGGCACGGATGTTTTATATGGCTGCCATCTATAATAAACCATACCTT------
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-------------------------------------------------------------------------------T
GAGACATGGAGTGAATTTGTTGGTAGGGGTGTAGATCTTTCAT---ACTGTATGAATGTACAACTAATGTATCACTGTTA
GAACTTTACTTTGGGTGCTAATGTAATTTGTTTAATGAATGAATAAAGTTTGATCGCCTCCAAAAGGGAACTTTACTTGG
GGTTCATATTTTAGAACGATATATCTGGATACACCCATTTATCTGGATATGTTAAAACCTTTTCATA--ATAGGAGACTG
TCTGGAGAATATATTGAGAAAATTTTGTGAGTTATTCTTTGTGTGTATTATGGTGAATAAATAGATGGAACTAAGGTTCA
TGTGAACTCCATAATTGTTTGTGATAGCTTTAGCACTAACAAGCACTG--TGTTAGCTGATGTTACCTGTACCAGTTAAC
TTCATTGGTTTTTCTT--CCTTTTTTTTTTCTTCTGTTGTTTAAA-TATTGGAATCTCTACTTTAGGGCTTCTAGTTGTT
AACCTAG-----TTGCTGAGTGAGCTGGTGGCTGATGCCTTGTTTAATGGCAGATTGGAGAATACGAAGAAACGGTTGGC
ACATGCTATTTATTTTCAGAAAGTGGTGAGTGTTTGCATCCCTCTGCAGCCTCTTTCTTTGCAGCAAACATTTCGCATGT
CCTGTTAAATCCCATAACCGAGTTTTGTACATTAACCTGATACCCTGTGAATACGATGATGCCGTTTCCTTCAGATTTCC
ATGCTTGTTTCGTATGAGATG--GCACCTTGTT----CACACATAGCATGTTTTTATCTAACTTGTCGGGAAGGCAGGGC
AACATTGCCATTCATGAGGAACCTTGTTCCCTGGCGCCGACCCTAGTGCAATTTTTACAGTGGATTCATTTGCTTTTTTA
AATATTTTGCTTCCTTTCCAGATGCTCCACCAAAACCTGTTCATGGAGAGCCGGCACCTCCCAAGGAAAACAAGGACAAG
CAAGGCAGAAACATCAAGGAAGCACCGCCCAAGGAGGTGAAACATCTGACGAGCGTTCACAAGATCCTCAAATTCCGGTC
GACCAGTGAGGGTCGTCAGGAGCACAGAGCATACCGATACAGGGACAAGGAGTTTTGA----------------------
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>chr2A_1_TraesCS2A01G373100
GTTGTCTCGGGCATCAACGGCGTCCGGGCGAGGTCGCCATTTCCATGTGGTCGCTGCTCCAAGCTGGTGGCGGGACGAGC
GCCGCTGAGCACGGGATCCTGCGGCAACGAGGCCGGGATCTCCGGATCTGTAGGCGGAGGAGGGGATCCGGCCGACGACC
GGGGGTAGCGGGCGTGGCGGCGCGACTGGCGGCGGCGTTGAGGGTTCGAGTGGGATAGTGGTGGGCGTGAAGGAGGAAGG
AGCAGAGGCAAAACTGTTCGAGAGAGAGGGCTGCTGGCTTGTTCTGTGCGCCAATCCAGCCCATCCCATCCCAGCCCAGC
CACGGCGTCCCCTGCGA--CTCTAGTTCGCGCCGTGGGCTCTGCCGCCGCCGCCGCCCTCCGAGGACCCGCCGCTCGCCG
TCTGCGCCAACGCGCTTCTCCCTCCGGAACCGCGCCAACTACAAGCCCCACCTAATCGCCCCCCAACTGAAGTCGCGCCC
CCTCCCCGACGCCAACCTTCATCTGTGAAGCGCCGGCGGCG------------GCCTCCACCGCCACCACCAGGTAAGGC
TTCGTTCTTTCTCTTTCCTTTGTTCCTTCGTTGCAATTGTTCGGCGAATGGAAGCTAACAGATAGAGAGAGGGCTCCATC
TCTGACTGGCAGCGACCTGTGTGCTGAGGTGAAAATTTCA---GAGGGTACATCGTGGGCAGTTTAGGTTATTTCACATG
AGGGTATTTGGTGTAAACAGTT-GGGGCATGTAAAATCCACTCCCCCTTAAGAGTTGTTGTATCGTCTG---CAGTCCCG
ATCTTTGGTAAA----TTAATTTG---CTAGCTGTTTAGCACAAAGTACAAAGGGACTGAAAGGATTTACTTTTTTGCCA
GGCAATCCTAG-----TTGTGTATTTCGCCTACTGCAAACATTCCCTGGATAGTTGTATCTTGTGTATTCAGTTCTTGCT
TCTGAACTCTGTAGGTAATCTGGTTGGTGAAGTGCAGGATTTACT------GCTGTACAAGTGCAAATTCTTGTTGGGGA
TGGCAAAGGAAGCTGAGAAAGATAAACAAATTGCTGAGGAGGAGGAGGAGGAGGAAGAAGAAGAAGAGTATGTCTTGCTA
GAGTTAGATGATGTTCATTATTCCTGCATACAACCAAATGCCCCTTATATACTCTCTGTAAGTTGGTTTCATCTCACAGT
ATGCAGCT--TACTGGTACAAAAGGACATTAGGCTCTGTTGTAAATGTAATTAAGAAGATGTGGTGTCTCTAAATTGTCC
TTAAGCACTTTTGTCA------------TATTGATATATATAAAGAAAGAGTTCACTTTAGATTTGATTATATCAGAAAT
GTTTAAATGGCCAATAGAGTCCCAGAGCAAATTATTTTTTTGTTTGCACT--AAGATGAA-------GCAGTAGGTTATG
TGCTGATTATCTAAGAGAGTTCTTGCCATTAGTATGTTCCACTTCTTACATGAAAGGGCTATATATGTTTCTTGTGTTTG
GAGCAACCTTCCTTCAGATTTGTTTTTAGGTTGCCATAGTCAATGGATACCGTTATCAGATACAAATTCCTGTTCAAGTT
GTGTCTATGTCTGTTTCGTAGATTCACGGCGACAAGCTAGGTA--GTTATGCGTTTAGTGATCGTCTT-GTTGGCTTATT
TGAGCTACCTGTACAATTTTGCTTACCGCCTTTATGTGTAGTTCGCTAAGTTATTTGTAATCTTCTTTTTCAGGGTTTGG
ATACATTGACTCCTACCTTGGTAGTAGGTGATGGCCTGAAGATGGTGAGTATTATTCATGTTA-TGTTCGCTTTTGAAGA
CGTTTACTTGTCAAGTTAAGGGGCATTATTCTTTT-TTTTTTGCGGGGAGTTAAAGGGCACTATTCTATA--------GT
TGTTTGAAGTTTATCTTATTGAACTTTTGGCACGGATGTTTTATATGGCTGCCATCTATAATAAACCATACCTT------
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-------------------------------------------------------------------------------T
GAGACATGGAGTGAATTTGTTGGTAGGGGTGTAGATCTTTCAT---ACTGTATGAATGTACAACTAATGTATCACTGTTA
GAACTTTACTTTGGGTGCTAATGTAATTTGTTTAATGAATGAATAAAGTTTGATCGCCTCCAAAAGGGAACTTTACTTGG
GGTTCATATTTTAGAACGATATATCTGGATACACCCATTTATCTGGATATGTTAAAACCTTTTCATA--ATAGGAGACTG
TCTGGAGAATATATTGAGAAAATTTTGTGAGTTATTCTTTGTGTGTATTATGGTGAATAAATAGATGGAACTAAGGTTCA
TGTGAACTCCATAATTGTTTGTGATAGCTTTAGCACTAACAAGCACTG--TGTTAGCTGATGTTACCTGTACCAGTTAAC
TTCATTGGTTTTTCTT--CCTTTTTTTTTTCTTCTGTTGTTTAAA-TATTGGAATCTCTACTTTAGGGCTTCTAGTTGTT
AACCTAG-----TTGCTGAGTGAGCTGGTGGCTGATGCCTTGTTTAATGGCAGATTGGAGAATACGAAGAAACGGTTGGC
ACATGCTATTTATTTTCAGAAAGTGGTGAGTGTTTGCATCCCTCTGCAGCCTCTTTCTTTGCAGCAAACATTTCGCATGT
CCTGTTAAATCCCATAACCGAGTTTTGTACATTAACCTGATACCCTGTGAATACGATGATGCCGTTTCCTTCAGATTTCC
ATGCTTGTTTCGTATGAGATG--GCACCTTGTT----CACACATAGCATGTTTTTATCTAACTTGTCGGGAAGGCAGGGC
AACATTGCCATTCATGAGGAACCTTGTTCCCTGGCGCCGACCCTAGTGCAATTTTTACAGTGGATTCATTTGCTTTTTTA
AATATTTTGCTTCCTTTCCAGATGCTCCACCAAAACCTGTTCATGGAGAGCCGGCACCTCCCAAGGAAAACAAGGACAAG
CAAGGCAGAAACATCAAGGAAGCACCGCCCAAGGAGGTGAAACATCTGACGAGCGTTCACAAGATCCTCAAATTCCGGTC
GACCAGTGAGGGTCGTCAGGAGCACAGAGCATACCGATACAGGGACAAGGAGTTTTGACTCTTCTAATGCA---------
-----------------------CACAGCAAGCGATCCTTTGACCCTTGGAATGCGAGGATAGTACTCC--------TTA
ATCTTAATTAGCCACTAGCATTCTCTATCCCGAGGTAACCAGCGGTTGCGAT------GCATGATTCCGGTGACTCTTAT
CCTCTCTCTATGAAGTATGCACTGTT---------------AATCTTGTGAAATTCTGCAACAATGGAGTTCCCGGTCTG
TATGTAAACTAATGCAGCTCTGCCTAAAACTTGGTAAAACATCCAGTGCTTCTGAAGCCATCC-----------------
---------------------------------AGTGCTTTTTTGGACCCAAGAAGCCATCCGGTT------------CT
TGAGTTAGAAAAAGTCGTTGGCTTCCGGTTGCTTTGCAGTTTGCCCCACTTGCTATTAGTCTAG-----TCTAGACCAAC
CTCACGCGCAACCGGAATGGATCTGGAATTCTAAAACCTCTTTAAACGCCTAGACC-GGAATCTTGATAGCGATTCCCAT
GTAATATAAGAGTGCCGCCCTGTTGCCACTTGCACCATAGAAAACACCGAGAGCTCCTGCGCTCCTGCCGTGAACGTGGG
AGGGAGGGGG-AGACCAAAGACCAATCGCAGCGGTCGTGT--ATATAACAAAACAAAGCATACATACATAGACCCAAGCC
AAGGCAAAAGGAGCCAGGAGTTGAATCATTTTGAGCTCCTGCGCC-----GCGCTAGATCTGAAGAGAAGCAAAG-ATGC
AGCATCACAGCAGCCTGCTGTGCTAGACCAGTCCTTGAGCGTGGTAGCATCGGACTCGGAGATGACGGGGATGATGGAGT
CGGTGAAGGCGAGGCCGGCG---------AAGGGCGGCAGCGAGTACCGGCGGGTGGAGCCGGAGGAGGAGGAGGAGCTG
GACGGGGCGGAGTGGGCGCGCAGGGCCGAGGCGGGGAGCCGCCGGCGGAAGGCGGCCGAGCGGTACGTCTTCACCTGCGC
GCTCTTCGCCTCGCTCAACGCCATCCTCCTCGGCTACGGTCAGTCATCTTCTCTTCTTTCATTCCTCCATCTATGTTTCC
TCCCT
>chrUn_282
TTCGTGCGCCAAT-------------------------------------------------------------------
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------------------------------------------------------------CCAGCCCATCCCAGCCCAGC
CACGGCATCCTCTGAGA--CTCTAGTTCGCGCCGTGGGCTCTGCCGCCGCCGCC---CTCTGAGGACCCGCCGCTCGCCG
TCTGCGCCAACGCGCTTCTCCCTCCGGAACCACGCCAACTACAAGCCCC-CCTAACCGCCCCTCAACTGAAGCCGCGCCC
CCTCCCCGACGCCAACCTTCATCTGTGAAGCGCTGCCGGCG------------GCCTCCACCGCCACCACCAGGTAAGGC
TTCGTTCTTTCTCTTTCCTTTGTCCCCTCGTTGCAATTGTTTGGCAAACGGAAGCTAACAGATAGAGAGAGGGCTCCATC
TCTGACCGGCAGCGGCCTGTGTGCTGAGGTGAAA--------------TGCATCGTGGGCAGTTTAGGTTATTTCACATG
AGGGTATTTGGTGTAAACAGTTGGGGGCATGTAAAATCCACCTTCCCTTAAAAGATGTTGTATCGTCTGTACTAGTCCCG
ATCTTTGGTAACTTGGTTAATTTG---CTAGCTGTTTAGCACAAAATACAAAGGGACTGAAAGGACTTACTCTTTTGCCA
GGCAATGCTACTGTACTTGTGTATTTCGCCTACTGCAAACATTTCCTGGATAGTTCTATCTTGTGCATTCAGTTTTTGCT
TCTGAACTCTGTAGGTAATCTGATTGGTGAAGTGCAGGATTCAC------------------------------------
TGGCAAAGGAAGCTGAGAAAGATAAACAAATTGCTTCGGAGGAG------GAGGAGGA---AGAAGAGTATGTCTTGCTA
GAGTTAGATGATGTTCATTATTCCTGCATACAACCAAATGCCCCTTATATACTCTCTGTAAGTTGGTTTCATCTCACAGT
CTGCAGCT--TACTGGTACAAAAGGACATTAGGCTCTGTTGTAAATGTAATTAAGAAGATGTGGCGTCTCTAAATTTTCC
TTAAGCACTTTTGTCATCTCTG---TGTTATTGATATATATCAAGAAAGAGTTCACTTTGGATTTGATTATATCAGAAAT
GTTTAAATGGCCAATAGAGTCCCAGAGCAAATTATTTTATTGTTTGCACT--AAGATGAA-------G-------TTATG
TGCTGATTATCTAAGAGAGTTCTTGCCATTAGTATGTGTCACTTCTTACATGAAAGGGCTATATATGTTTCTTGTGTTTG
GAGCAACCTTCCTTCAGATTTGTTTTTAGGTTGCCATAGTCAATGGATACAGTTATCAGATACAAATTCCTGTTCAGGTT
GTGTCTATGCCTGTTTCGTAGATTCACGGCAAAAATCTGGGTAGTGTTATGCATTTCGTTATTGTCTTGGTTGGCTTATA
TGAGCTACCTGTATAATTTTGCTTACCGCCTTTATGTGTAGTACGCTAAGTTATTTGTAATCTTCTTTTGCAGGGTTTGG
ATACATTGACTCCTACCTTGGTAGTAGGTGATAGCCTGAAGATGGTGAGTATTATTCATGTTA-TGTTCGCTTTTGAAGA
CGTTTGCTTGCTAAGTTAAGGGGCATTATTCTTTTCTTTTTGGCGGGGAGTTAAAGGGCACTATTCTATGA--------T
TGTTTCAAGTTTATCTTATTGAACTTTTGGCACTGATGTTTTATATGGCTGCCATCTATAATAAACCATACCTTTGAGAC
AGTGGCGGCGCCACGGTAGGGGCGACTATGGTCGGCCGCCCCGGGTAGCCGAAATCCCGTATACGTAAAAATACGATTCG
TTTGTACATAGGCTGATACATGTGTGCATTAACACTGCACTGCACGGTCACACCCTAGCCCAGTTGCAGCCCGTAGTACT
GGCAGCCCCGGGAAATCTCCAATTCGAGCCAGCTAGCCAGCACCCAAGCACACCCAGTTGTGACGTTTATGTTAGATTTT
GTGATTTTTGGTGGTTAGATTATCTACAGCCGGACTTGGCAAATTTGACCCCTCAAACGCCCGTGTACGCGTCCGCGGAC
ACTGACCGGGCACGTCTCATGCATATTTCCTTCTCCACGTATAACTTTCTTATATTCATCCCCTAAATTCATACAAAAGC
ATGCAGAATATATAGCTACGTACTACATTTTTCCTATTCAAATTTCGTTGTTGGCGGCGATGACCGGAGCCGCCTGCGCC
GGAGCCGGAGCTGCCAAAGTCGGAGTCTGGGCTGCCTGCGCCGCCTCCATCTATTGCCGACGGCGACGCCTGGCCTCCGC
AACCGACTCCGAGCAGATGGAGTTCAGGATGGCATGCTGCTTCAGCCACACGCTCACGTCCTCCTCCATCATCGACACCG
CCTCCTTCTCCACATCCAGCGGCGGTGCCTCTTCCTCTTCCTCCACAGGCTCCTGCTCCTCCTCCACCGGCTCCTGCTCC
TCCTTCTCTTCCTCCTCCCCCGGCACCTCCTCGAAATCCTTCTCCGGTTCTAGAGGTAGCCTCGCTTCCCTATGGATCCG
GACCTTCTCAAGGAGGAAGAGACGGAGTTGGATCGTGTAGTAGCGGCGGCGTGGGGGCATGGCTAACAGGCTCGAGTGGC
GGCGGAGGAAGGAAAGAGGCGGATGTGCTAGGGCTGGGGGCGCCGACCGGCTTAAATAGGCGGCTACGGCCTCGGGTGGC
GAGCATTTGTCAATCAAAAAAATTTATACCTCAAATGTTTCGCCCCGGCTAAGTTCAATTCCTGGATCCGCCACTGCTTT
GAGACATGGAGCGAATTTGTTGGTAGGGGTGTCAAGATCCTTTATAACTGTATGAATGTACAACTAATGTATCACTGCTA
GAACTTTACTTTGGGCGCTGATGTAATTTGTTTAGTGAGTGAATAAAGTTGGATCGCCTCCAAAAAGGAAATTTACCTGG
GGTTAATATTTTAGAACG--ATATCTGGATACACCCATTTATCCGGATATGTTAAAT-TTTTTCAAA--ACAGGAGACTG
TCTGGAGAATATATTGAGAACATTTTGTGAGCTGTTCTTTGTGTCTGTTATAGTGAATAAATAGATGTTACTAAGGTTCA
CGTGACCTCCATAATTATTTGTGATAACTTTAGCACTAAAAAGCACTGCATGTTAGCTGATGTTACCTGTACCAGTTAAC
TTCATTGGTTTTCCTT-CCC-TTTTTTTTTCTTCTGCTGTTTAAAATATTGGAATGTCTACTTTAGGGCTTGTAATTGTT
AACCTAGCCTAGTTGCTGCGTGAGCTGGTAGCTGATGCCTTGTTTAATGGCAGATTGGAGAATATGAAGAAACGGTTGGC
CCATGCTATTTATTTTCAGAAAGTGGTAAGTGTTTGCATCCCTCTGCAACCTTTTTCTTCACAGCAAACATTTCGCACGC
CCTGTTAAATCCCATGACCGACTTTCGTACATGAACCTGATACCCTGTGAATATGATGCTGCTGTTTCCTTGAGATTTCC
ATGCTTGTTTTGTATGAGATG--GC--CTTCTTCACACACACATAACATGTATTTATCTAACTTGTCGGAAAGGCGGGGC
AACATTGCCATTCATGAGGAACCTTGCTTTCCGTTG----CCCTAATGCGATTTTTTCAGTGGATTCATTTGCTGCTTTA
ATGTGTTTCCT---TTTTCAGATGCTCCACCAAAGCCCGTTCATGAAGAGCCGGCACCTCCCAAAGAAAACAAGGACAAG
CAAGGCAGAAACAT---------------CAAGGAGGTGAAACATGTGACGAGCGTTCACAAGATGCTCAAATTCCGGTC
GACCGGTGAGGGTCGTCAGGAGCACAGAGCATACCGTTACAGGGACAAGGAGTTTTGA----------------------
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>chr2B_296
CCAT----------------------------------------------------------------------------
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-----------------------------------------------------------CCCAGCCCATCCCAGCCCAGT
CACGGCGTCCTCTGCGACTCTCTAGTTCGCGCCGTGGGCTCTGCCGCCGCCGCCGCCCTCCGAGGACCCGCCGCTCGCCG
TCTGCGCCAACGCGCTTCTCCCTCTGGAACCGCGCCAACTACGAGCCCC-CCTAATCGCCCCTCAACTGAGGTCGCGCCC
CCTCCCCGACGCCAACCTTCCTCTGTGACGCGCCGGCGGCGGCCTCCCCCCGCGCCTCCACCGCCACCACCAGGTAAGGC
TTCGTTCTTTCTCTTTCCTTTGTTCCTTCGTTGCAATTGTTTGGCGAATGGAAGCTAACAGATGGAGAGAGGGCTCCATC
TCTGACTGGCAGCGACCTGTGTGCTGAGGTGAAAATTTCACATGAGGGTACATCGTGGGCAGTTTAGGTTATTTCACATG
ATGGTATTTGGTGTAAACAGTT-GGGGCGTGTAAAATCCACTCTCCCTTAAAAGTTGTTGTATCGTCTG---TAGTCCCG
ATCTTTGGTAATTTAATTAATTCGCTACTAGCTGTTTAGCACAAAATACAAAGGGAATGAAAGGACTTACTTTTTTGCCA
GGCAATCCTAG-----TTGTGTATTTCGCCTACTGCAAACATTTCCTGGATAGTTGTATCTTGTGCATTCAGTTCTTGCT
TCTGAACTCTGTAGGTAATCTGGTTGGTGAAGTGCAGGATTTACT------GCTGTATAAGTGCAAATTCTTGTTTGGGA
TGGCAAAGGAAGCTGAGAAAGATAAACAAATTGCTGAGGAGGAGGAGGACGAGGAGGA---GGAAGAGTATGTCTTGCTA
GAGTTAGATGATGTTCATTATTCCTGCATACAACCAAATGCCCCTTATATACTCTCTGTAAGTTGCTTTCAGCTCCCAGT
CTGCAGCT--TACTGGTACAAAAGGACATTAAGCTCTGTTGTAAATGTAATTAAGAAGATATGGCGTCTCTAAACTTTCC
TTAAGCACTTTTGCCATCTCTG---TGTTATTGATACATATCAAGAAAGAGTTCACTTTGGATTTGATTATATCAGAAAT
GTTTAAATGGCCAATAGAGTCCCAGAGCAAATTATTTTATTGCTTGCACT--AAGATGAAGCAGTAGG-------TTATG
TGCTGATTATCTAAGAGAGTTCTTGCCATTAGTATGTGCCACTTCTTACATGAAAGGGCTATATATGTTTCTTGTGTTTG
GAGCAACCTTCCTTCAGATTTGTTTTTAAGTTGCCATAGTCAATGGATACCGTTATCAGATACAAATTTCTGTTCAGGTT
GTGTCTATGCTTGTTTCATAGATTCACGGTGAAAATCTGGGTAGTATTATGCATTTAGTGATTGTCTT-TTTGGCTTATA
TGAGTTACCTGTCTAATTTTGCTTACCGTCTTTTTGTGTAGTTTGCTAAGTTATTTGTAATCTTCCTTTTCAGGGTTTGG
ATACATTGACTCCTACCTTGGTAGTAGGTGATGGCCTGAAGATGGTGAGTATTATTCATGTTAATGTTCGCTTTTGAAGA
CGTTTACTTGCCAAGTTAAGGGACATTATTC-TTT-TTTTTTACGGGGAGTAAAAGGGCACTATTCTATATTTCTATGGT
TGTTTGAAGTTTATCTTATTGAACTTTTGGCACTGATGTTTTATATGGCTGCCATCTATAATAAACCATACCTTTGAGAC
A-------------------------------------------------------------------------------
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------TGGAGTGAATTTGTTGGTAGGGGTGTCAAGATCCTTTATAACTGTATGAATGTACAACTAATGTATCACTGTTA
GAACTTTACTTTGGGTGCTGATGCAATTTGTTTAATTATTGAATAAAGTTTGATCGCCTCCAAAAAGGAACTTTACTTGG
GGTTAATATTTTAGAATA--ATATCTGGATATACCCATTTACCCGGGTATGTTAA--CTTTTTCATA--ATAGGAGACTG
TCTGGAGAATACATTGAGAAAATTTTGTGAGCTGTTCTTTGTGTCTGTTATAGTGAATAAATAGATGGAACTAAGGTTCA
TGTGAACTCCATAATTATATGTGATAGCTTTAGCACTAACAAGCACTGC--GTTAGCTGATGTTACCTGTACCAGTTAAC
TTCATTGGTGTTCCTT--CC-CTTTTTTTTCTTCTGCTGTTTAAAATATGGTAATCTCTACTTTAGGCCTCCTAGTTGTT
AACCTAG-----TTGCTGAGTGAGCTGGTAGCTGATGCCTTGTTTAATGGCAGATTGGAGAATACGAAGAAACGGTTGGC
ACATGCTATTTATTTTCAGAAAGTGGTAAGTGTTTGCATCGCTCTGCAGCCTCTTTCTTTGCAGCAAACATTTCACACGG
CCTGCTAAATGCCATGACCGAGTTTCGTACATTAACCTGATACCCTGTGAATATGCTGATGATGTTTCCTTCAGATTTCC
TTGCTTGTTTCGTATGAGATG--GC--CTTGTT----CACACATAACTTGTATTTATCTAACTT----------------
-------------------------------------------------------------------------------A
AATATGTTCCTTCCTTTTCAGATGCTCCACCAAAGCCCGTTCATGAAGAGCCGGCACCCCCCAAGGAAAACAAGGATAAG
CAAGGCAGAAACATCAAGGAAGCACCGTCCAAGGAGGTGAAACATCTCACGAGCGTTCACAAGATCCTCAAATTCCGGTC
GACCAGCGAGGGTCGTCAGGAGCACAGAGCATACCGTTACAGGGACAAGGAGTTTTGA-ACACAATGCTTGTAGCTGCTC
TCCCTTCTCTGATGCTTCTGATGCACAGCAAGCAATCCGTTGACCCTTGGAATGGAATGCAAGGATGGTAGTACTTGTTA
ATCTTAATTACCCACTAGCATTCTCTATCTCGAGGTAACTTGCGATTGCGAT------GCATGATTCCGGTGATTCTTGG
CCTCTCTTTCTGAATTTCTTGCTCTCTCCTTCTGAATCATCAATCTTTTGAAATTCTGCAACAATGGAGG-CCTTGGCTG
TCTGTGAACTCGTGCAGA---------------------------------------CCATTGAGTACTCCCTCCGATTC
AAAATAAGTGTCAAACTGCGACACTTATTATGGAGTACTTTTTTAGACCCAAGAAGCCACCCGGTAC-------------
-------------------GGCTTCCGGTTTCTTTGCAGTTCGCACCACTTGGTATT-----AG-----TCTAGACCATC
CTCACGCGCAACCGGAATGGATCTGGAGTTCTAAAACCTCTTTGAACGCCAGGATC-GGAATCTTGATAGCGATTCCCAT
GTAATATAAGAGTACCGCCCTGTTGCCACTTGCACCATAGAAAACACG--GAGCTCCTGCGGTCCTGCCGTGAACGTGGG
AGGGAGGGGGGAGACCAAAGACCAATCGCAGCGCTCGTATGCATATAACAAAATAAAGCATACATACATAGACCCAAGCC
AAGGGAAAAGGAGCCAGGAGTTGAATCAC-TTGAGCTCCTGCGCTGCGCTAG------------------------ATGC
AGCATCACAGTAGCCTGTTGTTGTAGACTAGTCCTTGAGCGTGGTAGCATCGGAGACAGTGATGACGGGGATGATGGAGT
CGGTGAAGGCGAGGCCGGCGGCGGCGGCGAAGTGCGGCAGCGAGTACCGGCGGGTGGAGCCGGAGGAGGAGGAGGAGCTG
GACGGGGCGGAGTGGGCGCGCAGGGCCGAGGCCGGGAGCCGCCGGCGGAAGACGGCCGAGCGGTACGTCTTCACCTGCGC
TCTCTTCGCCTCGCTCAACGCCATCCTCCTCGGCTACGGTCAGTCATCTTCTCTTCTTTTCATTCC--------------
-----
>chr2D_301
--------------------------------------------------------------------------------
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------------------------------------------------------------CCAGCCCATCCCAGCCCAGC
CAGGGCGTCCTCTGCGA--CTCTAGTTCGCGCCGTGGGCTCTGCCGCCGCCGCC---CTA--------CGCCGCTCGCCG
CCTGCGCCA---CGCTTCTCCCTCTGGAACCGCGCCAACTACAAGCCCC-CCTAATCGCCCCTCAACTTGAGTGGCGCCC
CCTCCCCGACGCCAATCTTCATCTGTGAAGCGCCGGCGGCGACCTCCCCCCGCGCCTCCACCGCCACCACCAGGTAAGGC
TTCGTTCTTTCTCTTTCCTTTGTTCCTTCGTCGCAATTGTTTGGCGAATGGAAGCTAACAGATAGAGAGAGGGCTCTATC
TCTGACTGGCAGCGGCCTGTGTGCCGAGGTGAAA--------------TACGTCGTGGGCAGCTTAGGTTATTTCACATG
AGGGTATTTGGTGTAAACAGCT-GGGGCATGTAAAATCCACCTTCCCTTAAAAGATGTTCTATCGTCTGTACTAGTCCCG
ATCTTTGGTAACTTGGTTAATTTG---CTAGCTGTTTAGCACAAATTACAAAGGGACTGAAAGGACTTACTTTTTTGCCA
GGCAATGCTAG-----TTGTGTATT-CGCCTACTGCACACATTTCCTGGATAGTTGTATCTTGTGCATTCAGTTCTTGCT
TCTGAACTCTGTAGGTAATCTGGTTGGTGAAGTGCAGGATTTACT------GCTGTATAAGTGCAAATTCTTGTTGGGGA
TGGCAAAGGAAGCTGAGAAAGATAAACAAATTGCC---GAGGAG------GAGGAGGA---GGAGGAGTATGTCTTGCTA
GAGTTAGATGATGTTCATTATTCCTGCATACAACCAAATGCCCCTTATATACTCTCTGTAAGTTGGTTTCATCTCCCAGT
CTGCAGCC--TACTGGTACAAAAGGACATTAGGCCCTGTTGTAAATGTAATTAAGAAGATGTGGTGTCTCTAAATTTTCC
TGAAGCACTTTTGCCATCTCTG---TGTTATTGATATATATCAAGAAAGAGTTCACTTTAGATTTGATTGTATCAGAAAT
ATTTAAATGGCCAATAGAGTCCCAGAGCAAATTATTTTATTGCTTGCACT--AAGATGAAGCAGTAGG-------TTATG
TGCTGATTATCTAAGAGAGTTCTTGCCATTAGTATGTGCCACTTCTTACATGAAAGGGCTATATATGTTTCTTGTGTTTG
GAGCAACCTTCCTTCAGATTTGTTTTTAGGTTGCCAGAGTCAATGGATACCGTTATCAGATACAAATTCCTGTTCAGGTT
GTGTCTATGCCTGTTTCGTAGATTCACAGTAAAAATCTGGGTAGTATTATGCGTTTAGTGATTGTCTT-GTTGGCTTATA
TGAGCTACCTGTATAATTTTGCTTACCGCCTTTATGTGTAGTTCGCTAAGTTATTTGTAATCTTCTTTTTCAGGGTTTGG
ATACATTGACTCCTACCTTGGTAGTAGGTGATGGCCTGAAGATGGTGAGTACTATTCATGTTAATGTTCGCTTTTGAAGA
CTTTTACTTGCCCAGTTAAGGGGCATTATTCTTTT-TTTTTGGCGGGGAGTTAAAGGGCACTATTCTATG--------GT
CGTTTGAAGTTTACCTTATTGAACTTTTGGCACTGATGTTTGATATGGCTGCCATCTATAATAAACCATACCTTTGAGAC
A-------------------------------------------------------------------------------
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------TGGAGTGAATTTGTTGGTAGGGGTGTCAAGATCCTTTATAACTGTATGAATGTACAGCTAATGTATCACTGTTA
GAACTTTACTTTGGGTGCTGATGTAATTTGTTTAATTATTGAATAAAGTTTGATCACCTCCAAAAAGGAACTTTACTCGG
GGTTAATATTTTAGAATG--ATATCTGGATACACCCATTTATCCGGATATGTTAGAACTTTTTCATAATATAGGAGACTC
TCTGGAGAATATATTGAGAAAATCTTGTGAGCTGTTCTTTGTGTCTGTTATAGTGAATAAATAGATGGAACTAAGGTTCA
CCTGAACTCCATAAGTATTTGTGATAGCTTTAGCACTAACAAGCACTG--TATTAGCTGATGTTACCTGTACCAGTTAAC
TTCATTGGTTTTCCTTCCCC-CTTTTTTTTCTTCTGCTGTTTAAAATATTGGAATCTCTACTTTAGGGCTTCTAGTTGTT
AACCTAG-----TTGCTGAGTCAGCTGGTGGCTGATGCCTTGTTTAATGGCAGATTGGAGAATACGAAGAAACGGTTGGC
ACATGCTATTTATTTTCAGAAAGTGGTAAGTGTTTGCATCCCTCTGCAGCCTCTTTCTTTGCAGCAAACATTTCGCATGT
CCTGTTAAATCTCATGACCGAGTTTCGTACATTAACCTGATACCCTGTGAATACGATGATGCTGTTTCCTTCAGATTTCC
ATGCTTGTTTCGTATGAGACGGCGC--CTTGTT----CACACATAGCATGTATTTATCTAACTTGTCGGGAAGGCAGGAT
AACATTGCCATTCAAGAGGAACCTTGCTACTCCTGCTCACCCTAGTTT---TTTTTACAGTGGATTCATTTGCTGTTTTA
AATATGTTCCTTCCTTTTCAGATGCTCCACCAAAGCCCGGTCATGAAGAGCTGGCACCCCCCAAAGAAAACAAGGACAAG
CAAGGCAAAAACATCAAAGAAGCACCGTCCAAGGAGGTGAAACATCTCACGAGCGTTCACAAGATCCTCAAATTCCGGTC
AACCAGTGAGGGCCGTCAGGAGCACAGAGCATACCGTTACAGGGACAAGGAGTTTTGAAACACAATGCTTGTAGCCGCTT
TCCCTTGTTTGACGCTTCTGATGCACAGCAGGCAATCCTTTGACCCTTCAAATGGAATGCAAGGATGGTAGTACTTGTTA
ATCTTAGTTACCCACTAGCATTCTCTATCCCGAGGTAACTCGCAATTGTGACGCTGACGCATGATTCCGGTGCTTCTTGT
CCTCTCTTTCTGAATTATGAGTC-----------------------TTTGAAGTTCTGCAACAATGG-------------
----TGAACTCATGCAGA---------------------------------------CCATTC-----------------
---------------------------------GGTACTTTTTTTGGCCCAAGAAGCCATCGGCACCCGGTACTACTACT
TGAGTTAGAAAAAGTCGTTGGCTTCCGGTTCCTTTGCAGTTTGCACCACTTGCTATT-----AGTCTAGTCTAGACGAAT
CTCACGCGCAACCGGAATAGATCTGGAATTCTAAAACCTCTTTAAACACCAGGACCTGGAATCTTGATAGTGACTCCCAT
GTAATATAAGAGTAGCGCCCTGTTGCCACTTGCACCATAGAAAACTCC--GAGCTCCTGCCGTCCTGCCGTGAACGTGGG
AT----GGGGAAGACCAAAGACCAATCGCAGCGTAACAAACTAATTAGTCTAG---------CATACATAGACCCAAGCC
GAAGCAAAAGAAGCCAGGAGTTGAATCAC-TTGAGCTCCTGCGCTGCTTTGCGCTAGATCTGAAGAGAAGCAAAGCATGC
AGCATCAC--TAGCCTGTTGTGCTAGACTAGCCCTTGAGCGTAGTAGCATCGGATTCGGAGATGACGGGGATGATGGAGT
CGGTGAAGGCGAGGCCGGCG---------AAGGGCGGCAGCGAGTACCGGAGGGTGGAGCCGGAGGAGGAGGAGGAGCTG
GACGGGGCGGAGTGGGCGCGCAGGGCCGAGGCCGGGAGCCGCCGGCGGAAGACGGCCGAGCGGTACGTCTTCACCTGCGC
GCTCTTCGCCTCGCTCAACGCCATCCTCCTCGGCTACGGTCAGTCATCTTCTCTTCTTTCATTCCCTACTATGCTTCTCC
TC---
>chr3D_900
--------------------------------------------------------------------------------
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----------------------------------------------------GTTGTACCTTGTGCATTCATCCCCTGCT
TTTGGACTCTGCAGGCAAGAT--TTGGTCAAGTGCTGGTTTTACTTTTACTGCTGTCTAAGTGCAAACTCTTGTTGGAGA
TGGCAAATGAACACGAGAGAGACAAGCAAATCGGAGAA------------GAGGAAGAAGAAGAAGAGTATGCCTTGCTA
GAGTTGGATGGTTGTCTCTATTCCAACATTCAACCAAATGCCCCTTATATACTCTCCATAAGTTGGTT-CTTCTCTGCGT
CCGCAGCTTATACTAGTACAAAAGGATATTTGTCTCTGTTGTGAATGT----------------------------TTCC
TTGGGCACTTTTGCTACCTCCTCTATGCTATTGATACCAAGGATGAG---------TTTAGATTTGATTATATCAGAAAT
GTTTAAATGGCGAGTATAGTTCCACAGCATCTTTTTTTCCGTGTTTAACATGAAGATGAAGCAGTAGG-------CTATG
TGCTGATTACACTAGCGCTGGTCTGGTACTGCCCACTGATA-TTATTACATCAAGGGACTAGATGCCTTTCTTGTATTTG
GCCGAAATCTCCTTCAGATTTGTTTTTAGGTTGACACTGTCGAGGGTTACCATCATCAGATACAAAATGCTGTTCAGGAT
GTGTCT--GTCTCTTCAGTAGATT--------------------------------------------------------
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-----
>SNPs
S-S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S----------------
----------S---------------------------------------------------------------------
-------------------------------------------------S------------S-----------------
--------------------------------------------------------------------------------
-----------------------------------------S--------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------S-------S--------------------S-------
-----------S---------------------------------S-------------------S--------------
-------------------------------------------S---------------------S--------------
---------------------------------------------------------S----------------------
-------------------------------------------------S------------------------------
--------------------------------------------------------------------------------
S---------------------------------------------------------------------------S---
-----------------------------------------S--------------------------------------
--------------------------------------S-----------------------------SSSSSSS-----
-------------------------------------S------------------------------------------
----------------------------------------------------------------------------S---
--------------------------------S--S--S-----------------------S----------------S
-------------S------------------------------------------------------------------
--------------------------------------------------------------------------------
----------S---------------------------------------------------------------------
---------------------------------S----------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------SS-SS-SSSS--------------------------------------
-------------------S------------------S--------------------------S--------------
----S-------------SS-----------------------S--------------S---------------------
-------------------------------S-S----------S-S----S----------------------------
----------------S---------------------------------------------------------------
------------S-------S---------------S-------------------------------------------
--------------------------------------------------------------------------------
---------------------------S----------------------------------------------------
---------------S---------S------------------------------------S-----------------
-------------------------SS------------------------S----------------------------
--------------------------S-S--S-SS-S-SS-----S---S------------------------S-----
--------S--------S----------------S--S-------S----------------------------------
---------------------------S----------------------------------------------------
------------------------------------S---------------------SS-SSSSSSSSSS---------
---------------------------------S--------------------SS-S-SS--S-SSSS-----------
----------S----------------------------SS---S----------------------------S----S-
-------S-S----S----SS--S-S---------------------S---------------------SS--SS-S---
-S---S----S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S------------------
------------------------------------S-------S--------------------S--------------
------------------------------S-------------S------------SSSSS------------------
--------------------------------------------------SS----------------------------
-------------S----------------------------------SS-----------S------------------
---------------------------------S----S--------------S--------------------------
----------------------------SS--------------S-----------------------------------
----------S------S----------S-------------------------S-------------------------
--------------------------------------------------------------------------------
--------------------------------S------------------S----------------------------
-----------------------------------------------------------------SSSS-S-SSS-S---
--SSS
>forward_272
--------------------------------------------------------------------------------
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------------ACTGTTCGAGAGAGAGGGCT------------------------------------------------
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>reverse_1663
--------------------------------------------------------------------------------
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--------------------------------------------------------------CGTCTTGTTGGCTTATTT
GAGCT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----
>forward_297
--------------------------------------------------------------------------------
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-------------------------------------CTTGTTCTGTGCGCCAATCC-----------------------
--------------------------------------------------------------------------------
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>reverse_3186
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-----------------------------------------------------------------GGGAACTTTACTTGG
GGTTCA--------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----
>forward_1090
--------------------------------------------------------------------------------
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------------------------------TTGCTGAGGAGGAGGAGGAG------------------------------
--------------------------------------------------------------------------------
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>reverse_3628
--------------------------------------------------------------------------------
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---------------------------GAGTGTTTGCATCCCTCTGC---------------------------------
--------------------------------------------------------------------------------
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-----
>forward_1636
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----------------CGTAGATTCACGGCGACAAG--------------------------------------------
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>reverse_4285
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--------------------------------------------GTTGCGATGCATGATTCCGG----------------
--------------------------------------------------------------------------------
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-----
