Multiple sequence alignment - TraesCS2A01G344600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G344600 chr2A 100.000 3481 0 0 1 3481 581940117 581943597 0.000000e+00 6429
1 TraesCS2A01G344600 chr2A 91.558 462 30 6 2152 2610 581962506 581962961 2.280000e-176 628
2 TraesCS2A01G344600 chr2D 95.502 2979 94 21 517 3481 414954588 414957540 0.000000e+00 4723
3 TraesCS2A01G344600 chr2D 87.783 794 59 15 2698 3481 416390016 416390781 0.000000e+00 894
4 TraesCS2A01G344600 chr2D 90.975 277 18 4 2152 2427 414961702 414961972 1.970000e-97 366
5 TraesCS2A01G344600 chr2D 86.897 290 10 9 2361 2650 414961971 414962232 2.030000e-77 300
6 TraesCS2A01G344600 chr2B 93.734 2729 106 32 558 3242 488191383 488194090 0.000000e+00 4032
7 TraesCS2A01G344600 chr2B 83.033 389 38 18 17 381 488044661 488045045 9.320000e-86 327
8 TraesCS2A01G344600 chr2B 93.519 216 9 2 3266 3481 488194081 488194291 2.020000e-82 316
9 TraesCS2A01G344600 chr5A 83.224 459 74 2 1975 2430 663305687 663306145 5.370000e-113 418
10 TraesCS2A01G344600 chr5A 91.489 188 7 7 1 180 619255625 619255811 2.070000e-62 250
11 TraesCS2A01G344600 chr4D 83.224 459 74 2 1975 2430 483138290 483138748 5.370000e-113 418
12 TraesCS2A01G344600 chr4B 83.007 459 75 2 1975 2430 613375728 613376186 2.500000e-111 412
13 TraesCS2A01G344600 chr1D 91.935 186 8 5 1 180 290507353 290507537 1.600000e-63 254
14 TraesCS2A01G344600 chr1D 91.534 189 5 8 1 180 397110138 397109952 2.070000e-62 250
15 TraesCS2A01G344600 chr1D 91.005 189 7 6 1 180 254523958 254524145 2.680000e-61 246
16 TraesCS2A01G344600 chr3A 91.534 189 6 6 1 180 672912124 672911937 5.770000e-63 252
17 TraesCS2A01G344600 chr5D 91.444 187 8 6 1 180 329122219 329122034 2.070000e-62 250
18 TraesCS2A01G344600 chrUn 91.053 190 6 6 1 180 93411747 93411559 2.680000e-61 246
19 TraesCS2A01G344600 chr6D 91.053 190 6 6 1 180 168249424 168249612 2.680000e-61 246


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G344600 chr2A 581940117 581943597 3480 False 6429 6429 100.0000 1 3481 1 chr2A.!!$F1 3480
1 TraesCS2A01G344600 chr2D 414954588 414957540 2952 False 4723 4723 95.5020 517 3481 1 chr2D.!!$F1 2964
2 TraesCS2A01G344600 chr2D 416390016 416390781 765 False 894 894 87.7830 2698 3481 1 chr2D.!!$F2 783
3 TraesCS2A01G344600 chr2D 414961702 414962232 530 False 333 366 88.9360 2152 2650 2 chr2D.!!$F3 498
4 TraesCS2A01G344600 chr2B 488191383 488194291 2908 False 2174 4032 93.6265 558 3481 2 chr2B.!!$F2 2923

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
250 251 0.175760 AGCCGTCGTGCTAATGTCAT 59.824 50.0 6.45 0.0 40.56 3.06 F
359 360 0.178964 CCAGAAAACAGGGGCAAGGA 60.179 55.0 0.00 0.0 0.00 3.36 F
1287 1332 0.099436 CGGAATGTAGCTTGCTTGGC 59.901 55.0 0.00 0.0 0.00 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1268 1310 0.099436 GCCAAGCAAGCTACATTCCG 59.901 55.0 0.0 0.0 0.00 4.30 R
1909 1954 0.323542 TTGAGGGAGAGAGACGGGAC 60.324 60.0 0.0 0.0 0.00 4.46 R
2896 3020 0.469705 TGCATGGTTGTGCTCCCTTT 60.470 50.0 0.0 0.0 45.27 3.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 7.792364 TTTTATCTTCCTGTAGACCTTCAGA 57.208 36.000 5.40 0.00 34.02 3.27
42 43 7.792364 TTTATCTTCCTGTAGACCTTCAGAA 57.208 36.000 5.40 0.00 34.02 3.02
43 44 7.979786 TTATCTTCCTGTAGACCTTCAGAAT 57.020 36.000 5.40 0.00 34.02 2.40
44 45 5.667539 TCTTCCTGTAGACCTTCAGAATG 57.332 43.478 5.40 0.00 34.02 2.67
65 66 2.579878 TTTTTGGTTGTGCGACCCA 58.420 47.368 6.17 0.00 39.01 4.51
66 67 0.895530 TTTTTGGTTGTGCGACCCAA 59.104 45.000 6.17 0.00 39.01 4.12
67 68 0.895530 TTTTGGTTGTGCGACCCAAA 59.104 45.000 6.17 5.18 44.30 3.28
68 69 0.457851 TTTGGTTGTGCGACCCAAAG 59.542 50.000 6.17 0.00 41.90 2.77
69 70 0.394488 TTGGTTGTGCGACCCAAAGA 60.394 50.000 6.17 0.00 39.01 2.52
70 71 0.817634 TGGTTGTGCGACCCAAAGAG 60.818 55.000 6.17 0.00 39.01 2.85
71 72 0.534203 GGTTGTGCGACCCAAAGAGA 60.534 55.000 0.00 0.00 33.41 3.10
72 73 1.305201 GTTGTGCGACCCAAAGAGAA 58.695 50.000 0.00 0.00 0.00 2.87
73 74 1.880027 GTTGTGCGACCCAAAGAGAAT 59.120 47.619 0.00 0.00 0.00 2.40
74 75 1.522668 TGTGCGACCCAAAGAGAATG 58.477 50.000 0.00 0.00 0.00 2.67
75 76 0.804989 GTGCGACCCAAAGAGAATGG 59.195 55.000 0.00 0.00 37.71 3.16
76 77 0.400213 TGCGACCCAAAGAGAATGGT 59.600 50.000 0.00 0.00 36.14 3.55
77 78 0.804989 GCGACCCAAAGAGAATGGTG 59.195 55.000 0.00 0.00 36.14 4.17
78 79 1.882352 GCGACCCAAAGAGAATGGTGT 60.882 52.381 0.00 0.00 36.14 4.16
79 80 2.504367 CGACCCAAAGAGAATGGTGTT 58.496 47.619 0.00 0.00 36.14 3.32
80 81 2.884639 CGACCCAAAGAGAATGGTGTTT 59.115 45.455 0.00 0.00 36.14 2.83
81 82 3.317993 CGACCCAAAGAGAATGGTGTTTT 59.682 43.478 0.00 0.00 36.14 2.43
82 83 4.202111 CGACCCAAAGAGAATGGTGTTTTT 60.202 41.667 0.00 0.00 36.14 1.94
83 84 5.022282 ACCCAAAGAGAATGGTGTTTTTG 57.978 39.130 0.00 0.00 36.14 2.44
84 85 4.141733 ACCCAAAGAGAATGGTGTTTTTGG 60.142 41.667 6.78 6.78 42.47 3.28
85 86 4.379652 CCAAAGAGAATGGTGTTTTTGGG 58.620 43.478 6.02 0.00 40.34 4.12
86 87 4.141733 CCAAAGAGAATGGTGTTTTTGGGT 60.142 41.667 6.02 0.00 40.34 4.51
87 88 5.427378 CAAAGAGAATGGTGTTTTTGGGTT 58.573 37.500 0.00 0.00 0.00 4.11
88 89 4.670896 AGAGAATGGTGTTTTTGGGTTG 57.329 40.909 0.00 0.00 0.00 3.77
89 90 4.030216 AGAGAATGGTGTTTTTGGGTTGT 58.970 39.130 0.00 0.00 0.00 3.32
90 91 5.205056 AGAGAATGGTGTTTTTGGGTTGTA 58.795 37.500 0.00 0.00 0.00 2.41
91 92 5.068591 AGAGAATGGTGTTTTTGGGTTGTAC 59.931 40.000 0.00 0.00 0.00 2.90
92 93 4.100344 AGAATGGTGTTTTTGGGTTGTACC 59.900 41.667 0.00 0.00 37.60 3.34
93 94 2.816411 TGGTGTTTTTGGGTTGTACCA 58.184 42.857 0.00 0.00 41.02 3.25
101 102 3.935818 TTGGGTTGTACCAAGTCTGAA 57.064 42.857 0.00 0.00 45.19 3.02
102 103 3.935818 TGGGTTGTACCAAGTCTGAAA 57.064 42.857 0.00 0.00 41.02 2.69
103 104 3.547746 TGGGTTGTACCAAGTCTGAAAC 58.452 45.455 0.00 0.00 41.02 2.78
104 105 2.882761 GGGTTGTACCAAGTCTGAAACC 59.117 50.000 0.00 0.00 41.02 3.27
105 106 2.546789 GGTTGTACCAAGTCTGAAACCG 59.453 50.000 0.00 0.00 38.42 4.44
106 107 3.460103 GTTGTACCAAGTCTGAAACCGA 58.540 45.455 0.00 0.00 0.00 4.69
107 108 3.380479 TGTACCAAGTCTGAAACCGAG 57.620 47.619 0.00 0.00 0.00 4.63
108 109 2.696707 TGTACCAAGTCTGAAACCGAGT 59.303 45.455 0.00 0.00 0.00 4.18
109 110 2.240493 ACCAAGTCTGAAACCGAGTG 57.760 50.000 0.00 0.00 0.00 3.51
110 111 1.202651 ACCAAGTCTGAAACCGAGTGG 60.203 52.381 0.00 0.00 42.84 4.00
111 112 1.070134 CCAAGTCTGAAACCGAGTGGA 59.930 52.381 0.00 0.00 39.21 4.02
112 113 2.289694 CCAAGTCTGAAACCGAGTGGAT 60.290 50.000 0.00 0.00 39.21 3.41
113 114 3.403038 CAAGTCTGAAACCGAGTGGATT 58.597 45.455 0.00 0.00 39.21 3.01
114 115 3.771577 AGTCTGAAACCGAGTGGATTT 57.228 42.857 0.00 0.00 39.21 2.17
115 116 4.884668 AGTCTGAAACCGAGTGGATTTA 57.115 40.909 0.00 0.00 39.21 1.40
116 117 5.422214 AGTCTGAAACCGAGTGGATTTAT 57.578 39.130 0.00 0.00 39.21 1.40
117 118 5.805728 AGTCTGAAACCGAGTGGATTTATT 58.194 37.500 0.00 0.00 39.21 1.40
118 119 6.238648 AGTCTGAAACCGAGTGGATTTATTT 58.761 36.000 0.00 0.00 39.21 1.40
119 120 6.715264 AGTCTGAAACCGAGTGGATTTATTTT 59.285 34.615 0.00 0.00 39.21 1.82
120 121 7.230712 AGTCTGAAACCGAGTGGATTTATTTTT 59.769 33.333 0.00 0.00 39.21 1.94
171 172 9.486123 TTTATTGGGAATCAAATGTTAGATGGA 57.514 29.630 0.00 0.00 39.05 3.41
172 173 9.659135 TTATTGGGAATCAAATGTTAGATGGAT 57.341 29.630 0.00 0.00 39.05 3.41
173 174 7.587037 TTGGGAATCAAATGTTAGATGGATC 57.413 36.000 0.00 0.00 31.46 3.36
174 175 6.914665 TGGGAATCAAATGTTAGATGGATCT 58.085 36.000 0.00 0.00 40.86 2.75
175 176 8.044574 TGGGAATCAAATGTTAGATGGATCTA 57.955 34.615 0.00 0.00 38.32 1.98
176 177 7.939039 TGGGAATCAAATGTTAGATGGATCTAC 59.061 37.037 0.00 0.00 39.00 2.59
177 178 7.939039 GGGAATCAAATGTTAGATGGATCTACA 59.061 37.037 0.00 0.10 39.00 2.74
178 179 9.342308 GGAATCAAATGTTAGATGGATCTACAA 57.658 33.333 0.00 0.00 39.00 2.41
180 181 7.792374 TCAAATGTTAGATGGATCTACAAGC 57.208 36.000 0.00 0.00 39.00 4.01
181 182 7.337938 TCAAATGTTAGATGGATCTACAAGCA 58.662 34.615 0.00 0.00 39.00 3.91
182 183 7.828717 TCAAATGTTAGATGGATCTACAAGCAA 59.171 33.333 0.00 0.00 39.00 3.91
183 184 8.627403 CAAATGTTAGATGGATCTACAAGCAAT 58.373 33.333 0.00 0.00 39.00 3.56
184 185 9.851686 AAATGTTAGATGGATCTACAAGCAATA 57.148 29.630 0.00 0.00 39.00 1.90
187 188 9.276590 TGTTAGATGGATCTACAAGCAATATTG 57.723 33.333 11.27 11.27 39.00 1.90
188 189 6.814506 AGATGGATCTACAAGCAATATTGC 57.185 37.500 29.21 29.21 44.21 3.56
189 190 6.301486 AGATGGATCTACAAGCAATATTGCA 58.699 36.000 35.25 18.52 45.33 4.08
190 191 6.206243 AGATGGATCTACAAGCAATATTGCAC 59.794 38.462 35.25 17.76 45.33 4.57
191 192 8.654704 AGATGGATCTACAAGCAATATTGCACC 61.655 40.741 35.25 23.70 45.33 5.01
214 215 5.585390 CATCCATGGACAAATCTAAACAGC 58.415 41.667 18.99 0.00 0.00 4.40
215 216 4.661222 TCCATGGACAAATCTAAACAGCA 58.339 39.130 11.44 0.00 0.00 4.41
216 217 4.701651 TCCATGGACAAATCTAAACAGCAG 59.298 41.667 11.44 0.00 0.00 4.24
217 218 4.460382 CCATGGACAAATCTAAACAGCAGT 59.540 41.667 5.56 0.00 0.00 4.40
218 219 5.647658 CCATGGACAAATCTAAACAGCAGTA 59.352 40.000 5.56 0.00 0.00 2.74
219 220 6.183360 CCATGGACAAATCTAAACAGCAGTAG 60.183 42.308 5.56 0.00 0.00 2.57
220 221 5.245531 TGGACAAATCTAAACAGCAGTAGG 58.754 41.667 0.00 0.00 0.00 3.18
221 222 4.095036 GGACAAATCTAAACAGCAGTAGGC 59.905 45.833 0.00 0.00 45.30 3.93
230 231 4.637771 GCAGTAGGCGGTTGGATT 57.362 55.556 0.00 0.00 0.00 3.01
231 232 3.772619 GCAGTAGGCGGTTGGATTA 57.227 52.632 0.00 0.00 0.00 1.75
232 233 1.583054 GCAGTAGGCGGTTGGATTAG 58.417 55.000 0.00 0.00 0.00 1.73
233 234 1.583054 CAGTAGGCGGTTGGATTAGC 58.417 55.000 0.00 0.00 0.00 3.09
238 239 3.700961 CGGTTGGATTAGCCGTCG 58.299 61.111 0.00 0.00 46.68 5.12
239 240 1.153706 CGGTTGGATTAGCCGTCGT 60.154 57.895 0.00 0.00 46.68 4.34
240 241 1.418342 CGGTTGGATTAGCCGTCGTG 61.418 60.000 0.00 0.00 46.68 4.35
241 242 1.702491 GGTTGGATTAGCCGTCGTGC 61.702 60.000 0.00 0.00 40.66 5.34
242 243 0.739813 GTTGGATTAGCCGTCGTGCT 60.740 55.000 11.96 11.96 45.38 4.40
243 244 0.818938 TTGGATTAGCCGTCGTGCTA 59.181 50.000 10.26 10.26 42.75 3.49
248 249 1.917273 TTAGCCGTCGTGCTAATGTC 58.083 50.000 18.34 0.00 46.12 3.06
249 250 0.812549 TAGCCGTCGTGCTAATGTCA 59.187 50.000 11.48 0.00 40.74 3.58
250 251 0.175760 AGCCGTCGTGCTAATGTCAT 59.824 50.000 6.45 0.00 40.56 3.06
251 252 1.407618 AGCCGTCGTGCTAATGTCATA 59.592 47.619 6.45 0.00 40.56 2.15
252 253 2.035961 AGCCGTCGTGCTAATGTCATAT 59.964 45.455 6.45 0.00 40.56 1.78
253 254 3.254903 AGCCGTCGTGCTAATGTCATATA 59.745 43.478 6.45 0.00 40.56 0.86
254 255 3.608506 GCCGTCGTGCTAATGTCATATAG 59.391 47.826 0.00 0.00 0.00 1.31
255 256 3.608506 CCGTCGTGCTAATGTCATATAGC 59.391 47.826 14.87 14.87 43.78 2.97
265 266 8.719478 GCTAATGTCATATAGCAAACATTGTC 57.281 34.615 16.01 0.00 43.16 3.18
266 267 7.805071 GCTAATGTCATATAGCAAACATTGTCC 59.195 37.037 16.01 0.00 43.16 4.02
267 268 7.643569 AATGTCATATAGCAAACATTGTCCA 57.356 32.000 0.00 0.00 40.00 4.02
268 269 7.828508 ATGTCATATAGCAAACATTGTCCAT 57.171 32.000 0.00 0.00 0.00 3.41
269 270 7.030075 TGTCATATAGCAAACATTGTCCATG 57.970 36.000 0.00 0.00 39.07 3.66
270 271 6.827762 TGTCATATAGCAAACATTGTCCATGA 59.172 34.615 0.00 0.00 36.24 3.07
271 272 7.338957 TGTCATATAGCAAACATTGTCCATGAA 59.661 33.333 0.00 0.00 36.24 2.57
272 273 7.859377 GTCATATAGCAAACATTGTCCATGAAG 59.141 37.037 0.00 0.00 36.24 3.02
273 274 7.557358 TCATATAGCAAACATTGTCCATGAAGT 59.443 33.333 0.00 0.00 36.24 3.01
274 275 8.839343 CATATAGCAAACATTGTCCATGAAGTA 58.161 33.333 0.00 0.00 36.24 2.24
275 276 5.376854 AGCAAACATTGTCCATGAAGTAC 57.623 39.130 0.00 0.00 36.24 2.73
276 277 5.072741 AGCAAACATTGTCCATGAAGTACT 58.927 37.500 0.00 0.00 36.24 2.73
277 278 5.536161 AGCAAACATTGTCCATGAAGTACTT 59.464 36.000 8.13 8.13 36.24 2.24
278 279 5.858581 GCAAACATTGTCCATGAAGTACTTC 59.141 40.000 25.73 25.73 39.91 3.01
279 280 6.381801 CAAACATTGTCCATGAAGTACTTCC 58.618 40.000 28.43 15.45 38.77 3.46
280 281 4.253685 ACATTGTCCATGAAGTACTTCCG 58.746 43.478 28.43 20.22 38.77 4.30
281 282 4.020573 ACATTGTCCATGAAGTACTTCCGA 60.021 41.667 28.43 19.20 38.77 4.55
282 283 4.610605 TTGTCCATGAAGTACTTCCGAA 57.389 40.909 28.43 13.82 38.77 4.30
283 284 4.819105 TGTCCATGAAGTACTTCCGAAT 57.181 40.909 28.43 15.36 38.77 3.34
284 285 5.925506 TGTCCATGAAGTACTTCCGAATA 57.074 39.130 28.43 13.13 38.77 1.75
285 286 6.288941 TGTCCATGAAGTACTTCCGAATAA 57.711 37.500 28.43 12.46 38.77 1.40
286 287 6.703319 TGTCCATGAAGTACTTCCGAATAAA 58.297 36.000 28.43 11.79 38.77 1.40
287 288 7.335627 TGTCCATGAAGTACTTCCGAATAAAT 58.664 34.615 28.43 13.41 38.77 1.40
288 289 8.479689 TGTCCATGAAGTACTTCCGAATAAATA 58.520 33.333 28.43 10.45 38.77 1.40
289 290 9.490379 GTCCATGAAGTACTTCCGAATAAATAT 57.510 33.333 28.43 12.12 38.77 1.28
301 302 9.651718 CTTCCGAATAAATATTGTAAACAGAGC 57.348 33.333 0.00 0.00 0.00 4.09
302 303 8.958119 TCCGAATAAATATTGTAAACAGAGCT 57.042 30.769 0.00 0.00 0.00 4.09
303 304 8.826710 TCCGAATAAATATTGTAAACAGAGCTG 58.173 33.333 0.00 0.00 0.00 4.24
304 305 8.826710 CCGAATAAATATTGTAAACAGAGCTGA 58.173 33.333 4.21 0.00 0.00 4.26
310 311 8.635765 AATATTGTAAACAGAGCTGAAAAGGA 57.364 30.769 4.21 0.00 0.00 3.36
311 312 8.814038 ATATTGTAAACAGAGCTGAAAAGGAT 57.186 30.769 4.21 0.00 0.00 3.24
312 313 5.947228 TGTAAACAGAGCTGAAAAGGATG 57.053 39.130 4.21 0.00 0.00 3.51
313 314 4.761739 TGTAAACAGAGCTGAAAAGGATGG 59.238 41.667 4.21 0.00 0.00 3.51
314 315 3.515602 AACAGAGCTGAAAAGGATGGT 57.484 42.857 4.21 0.00 0.00 3.55
315 316 2.787994 ACAGAGCTGAAAAGGATGGTG 58.212 47.619 4.21 0.00 0.00 4.17
316 317 2.107204 ACAGAGCTGAAAAGGATGGTGT 59.893 45.455 4.21 0.00 0.00 4.16
317 318 2.746362 CAGAGCTGAAAAGGATGGTGTC 59.254 50.000 0.00 0.00 0.00 3.67
318 319 1.734465 GAGCTGAAAAGGATGGTGTCG 59.266 52.381 0.00 0.00 0.00 4.35
319 320 1.347707 AGCTGAAAAGGATGGTGTCGA 59.652 47.619 0.00 0.00 0.00 4.20
320 321 1.464997 GCTGAAAAGGATGGTGTCGAC 59.535 52.381 9.11 9.11 0.00 4.20
321 322 2.766313 CTGAAAAGGATGGTGTCGACA 58.234 47.619 15.76 15.76 0.00 4.35
322 323 2.480419 CTGAAAAGGATGGTGTCGACAC 59.520 50.000 35.26 35.26 45.72 3.67
330 331 2.257676 GTGTCGACACCCGTCCTC 59.742 66.667 33.62 9.97 40.85 3.71
331 332 3.359523 TGTCGACACCCGTCCTCG 61.360 66.667 15.76 0.00 39.11 4.63
332 333 3.360340 GTCGACACCCGTCCTCGT 61.360 66.667 11.55 0.00 39.11 4.18
333 334 3.359523 TCGACACCCGTCCTCGTG 61.360 66.667 0.00 0.00 39.11 4.35
334 335 3.667282 CGACACCCGTCCTCGTGT 61.667 66.667 0.00 0.00 39.11 4.49
335 336 2.257676 GACACCCGTCCTCGTGTC 59.742 66.667 4.73 4.73 36.48 3.67
336 337 2.203451 ACACCCGTCCTCGTGTCT 60.203 61.111 0.00 0.00 35.01 3.41
337 338 2.197643 GACACCCGTCCTCGTGTCTC 62.198 65.000 11.96 0.00 38.85 3.36
338 339 2.675772 ACCCGTCCTCGTGTCTCC 60.676 66.667 0.00 0.00 35.01 3.71
339 340 3.812019 CCCGTCCTCGTGTCTCCG 61.812 72.222 0.00 0.00 35.01 4.63
340 341 4.477975 CCGTCCTCGTGTCTCCGC 62.478 72.222 0.00 0.00 35.01 5.54
341 342 4.477975 CGTCCTCGTGTCTCCGCC 62.478 72.222 0.00 0.00 0.00 6.13
342 343 3.371063 GTCCTCGTGTCTCCGCCA 61.371 66.667 0.00 0.00 0.00 5.69
343 344 3.062466 TCCTCGTGTCTCCGCCAG 61.062 66.667 0.00 0.00 0.00 4.85
344 345 3.062466 CCTCGTGTCTCCGCCAGA 61.062 66.667 0.00 0.00 0.00 3.86
345 346 2.636412 CCTCGTGTCTCCGCCAGAA 61.636 63.158 0.00 0.00 30.72 3.02
346 347 1.289066 CTCGTGTCTCCGCCAGAAA 59.711 57.895 0.00 0.00 30.72 2.52
347 348 0.319555 CTCGTGTCTCCGCCAGAAAA 60.320 55.000 0.00 0.00 30.72 2.29
348 349 0.599204 TCGTGTCTCCGCCAGAAAAC 60.599 55.000 0.00 0.00 30.72 2.43
349 350 0.878523 CGTGTCTCCGCCAGAAAACA 60.879 55.000 0.00 0.00 30.72 2.83
350 351 0.868406 GTGTCTCCGCCAGAAAACAG 59.132 55.000 0.00 0.00 30.72 3.16
351 352 0.250295 TGTCTCCGCCAGAAAACAGG 60.250 55.000 0.00 0.00 30.72 4.00
352 353 0.955919 GTCTCCGCCAGAAAACAGGG 60.956 60.000 0.00 0.00 30.72 4.45
353 354 1.675641 CTCCGCCAGAAAACAGGGG 60.676 63.158 0.00 0.00 37.57 4.79
354 355 3.373565 CCGCCAGAAAACAGGGGC 61.374 66.667 0.00 0.00 42.98 5.80
355 356 2.597217 CGCCAGAAAACAGGGGCA 60.597 61.111 0.00 0.00 46.75 5.36
356 357 2.199652 CGCCAGAAAACAGGGGCAA 61.200 57.895 0.00 0.00 46.75 4.52
357 358 1.667722 GCCAGAAAACAGGGGCAAG 59.332 57.895 0.00 0.00 45.70 4.01
358 359 1.820010 GCCAGAAAACAGGGGCAAGG 61.820 60.000 0.00 0.00 45.70 3.61
359 360 0.178964 CCAGAAAACAGGGGCAAGGA 60.179 55.000 0.00 0.00 0.00 3.36
360 361 1.703411 CAGAAAACAGGGGCAAGGAA 58.297 50.000 0.00 0.00 0.00 3.36
361 362 2.038659 CAGAAAACAGGGGCAAGGAAA 58.961 47.619 0.00 0.00 0.00 3.13
362 363 2.036346 CAGAAAACAGGGGCAAGGAAAG 59.964 50.000 0.00 0.00 0.00 2.62
363 364 1.344438 GAAAACAGGGGCAAGGAAAGG 59.656 52.381 0.00 0.00 0.00 3.11
364 365 0.264657 AAACAGGGGCAAGGAAAGGT 59.735 50.000 0.00 0.00 0.00 3.50
365 366 0.469892 AACAGGGGCAAGGAAAGGTG 60.470 55.000 0.00 0.00 0.00 4.00
366 367 1.360393 ACAGGGGCAAGGAAAGGTGA 61.360 55.000 0.00 0.00 0.00 4.02
367 368 0.178964 CAGGGGCAAGGAAAGGTGAA 60.179 55.000 0.00 0.00 0.00 3.18
368 369 0.560688 AGGGGCAAGGAAAGGTGAAA 59.439 50.000 0.00 0.00 0.00 2.69
369 370 1.062505 AGGGGCAAGGAAAGGTGAAAA 60.063 47.619 0.00 0.00 0.00 2.29
370 371 1.344438 GGGGCAAGGAAAGGTGAAAAG 59.656 52.381 0.00 0.00 0.00 2.27
371 372 1.344438 GGGCAAGGAAAGGTGAAAAGG 59.656 52.381 0.00 0.00 0.00 3.11
372 373 1.270305 GGCAAGGAAAGGTGAAAAGGC 60.270 52.381 0.00 0.00 0.00 4.35
373 374 1.270305 GCAAGGAAAGGTGAAAAGGCC 60.270 52.381 0.00 0.00 0.00 5.19
374 375 1.344438 CAAGGAAAGGTGAAAAGGCCC 59.656 52.381 0.00 0.00 0.00 5.80
375 376 0.860457 AGGAAAGGTGAAAAGGCCCT 59.140 50.000 0.00 0.00 0.00 5.19
376 377 1.220493 AGGAAAGGTGAAAAGGCCCTT 59.780 47.619 0.00 0.00 40.27 3.95
378 379 2.438021 GGAAAGGTGAAAAGGCCCTTTT 59.562 45.455 21.19 21.19 46.01 2.27
379 380 3.118038 GGAAAGGTGAAAAGGCCCTTTTT 60.118 43.478 21.87 5.63 46.01 1.94
400 401 7.432350 TTTTTGCGAATGAAATGGCTTTATT 57.568 28.000 0.00 0.00 0.00 1.40
401 402 7.432350 TTTTGCGAATGAAATGGCTTTATTT 57.568 28.000 0.00 0.00 33.19 1.40
402 403 6.645700 TTGCGAATGAAATGGCTTTATTTC 57.354 33.333 11.89 11.89 43.84 2.17
409 410 5.663456 TGAAATGGCTTTATTTCATCTGCC 58.337 37.500 15.39 0.00 46.50 4.85
412 413 3.700538 TGGCTTTATTTCATCTGCCACT 58.299 40.909 0.00 0.00 44.35 4.00
413 414 4.854173 TGGCTTTATTTCATCTGCCACTA 58.146 39.130 0.00 0.00 44.35 2.74
414 415 5.448654 TGGCTTTATTTCATCTGCCACTAT 58.551 37.500 0.00 0.00 44.35 2.12
415 416 5.893255 TGGCTTTATTTCATCTGCCACTATT 59.107 36.000 0.00 0.00 44.35 1.73
416 417 6.039717 TGGCTTTATTTCATCTGCCACTATTC 59.960 38.462 0.00 0.00 44.35 1.75
417 418 6.039717 GGCTTTATTTCATCTGCCACTATTCA 59.960 38.462 0.00 0.00 40.04 2.57
418 419 7.416664 GGCTTTATTTCATCTGCCACTATTCAA 60.417 37.037 0.00 0.00 40.04 2.69
419 420 7.975616 GCTTTATTTCATCTGCCACTATTCAAA 59.024 33.333 0.00 0.00 0.00 2.69
420 421 9.859427 CTTTATTTCATCTGCCACTATTCAAAA 57.141 29.630 0.00 0.00 0.00 2.44
423 424 8.937634 ATTTCATCTGCCACTATTCAAAAATC 57.062 30.769 0.00 0.00 0.00 2.17
424 425 6.455360 TCATCTGCCACTATTCAAAAATCC 57.545 37.500 0.00 0.00 0.00 3.01
425 426 6.189859 TCATCTGCCACTATTCAAAAATCCT 58.810 36.000 0.00 0.00 0.00 3.24
426 427 6.319658 TCATCTGCCACTATTCAAAAATCCTC 59.680 38.462 0.00 0.00 0.00 3.71
427 428 5.569355 TCTGCCACTATTCAAAAATCCTCA 58.431 37.500 0.00 0.00 0.00 3.86
428 429 5.649395 TCTGCCACTATTCAAAAATCCTCAG 59.351 40.000 0.00 0.00 0.00 3.35
429 430 5.324409 TGCCACTATTCAAAAATCCTCAGT 58.676 37.500 0.00 0.00 0.00 3.41
430 431 5.774690 TGCCACTATTCAAAAATCCTCAGTT 59.225 36.000 0.00 0.00 0.00 3.16
431 432 6.267471 TGCCACTATTCAAAAATCCTCAGTTT 59.733 34.615 0.00 0.00 0.00 2.66
432 433 6.808704 GCCACTATTCAAAAATCCTCAGTTTC 59.191 38.462 0.00 0.00 0.00 2.78
433 434 7.315890 CCACTATTCAAAAATCCTCAGTTTCC 58.684 38.462 0.00 0.00 0.00 3.13
434 435 7.177392 CCACTATTCAAAAATCCTCAGTTTCCT 59.823 37.037 0.00 0.00 0.00 3.36
435 436 8.579863 CACTATTCAAAAATCCTCAGTTTCCTT 58.420 33.333 0.00 0.00 0.00 3.36
436 437 9.147732 ACTATTCAAAAATCCTCAGTTTCCTTT 57.852 29.630 0.00 0.00 0.00 3.11
437 438 9.987272 CTATTCAAAAATCCTCAGTTTCCTTTT 57.013 29.630 0.00 0.00 0.00 2.27
469 470 9.847706 AAACACAAACGTTCATATATAAATGCA 57.152 25.926 0.00 0.00 0.00 3.96
470 471 8.835467 ACACAAACGTTCATATATAAATGCAC 57.165 30.769 0.00 0.00 0.00 4.57
471 472 8.454894 ACACAAACGTTCATATATAAATGCACA 58.545 29.630 0.00 0.00 0.00 4.57
472 473 8.733128 CACAAACGTTCATATATAAATGCACAC 58.267 33.333 0.00 0.00 0.00 3.82
473 474 8.454894 ACAAACGTTCATATATAAATGCACACA 58.545 29.630 0.00 0.00 0.00 3.72
474 475 8.733128 CAAACGTTCATATATAAATGCACACAC 58.267 33.333 0.00 0.00 0.00 3.82
475 476 7.546778 ACGTTCATATATAAATGCACACACA 57.453 32.000 0.00 0.00 0.00 3.72
476 477 7.980062 ACGTTCATATATAAATGCACACACAA 58.020 30.769 0.00 0.00 0.00 3.33
477 478 8.454894 ACGTTCATATATAAATGCACACACAAA 58.545 29.630 0.00 0.00 0.00 2.83
478 479 8.733128 CGTTCATATATAAATGCACACACAAAC 58.267 33.333 0.00 0.00 0.00 2.93
479 480 8.733128 GTTCATATATAAATGCACACACAAACG 58.267 33.333 0.00 0.00 0.00 3.60
480 481 6.909895 TCATATATAAATGCACACACAAACGC 59.090 34.615 0.00 0.00 0.00 4.84
481 482 3.641437 ATAAATGCACACACAAACGCT 57.359 38.095 0.00 0.00 0.00 5.07
482 483 4.757799 ATAAATGCACACACAAACGCTA 57.242 36.364 0.00 0.00 0.00 4.26
483 484 3.428746 AAATGCACACACAAACGCTAA 57.571 38.095 0.00 0.00 0.00 3.09
484 485 3.641437 AATGCACACACAAACGCTAAT 57.359 38.095 0.00 0.00 0.00 1.73
485 486 2.397777 TGCACACACAAACGCTAATG 57.602 45.000 0.00 0.00 0.00 1.90
486 487 1.943340 TGCACACACAAACGCTAATGA 59.057 42.857 0.00 0.00 0.00 2.57
487 488 2.286713 TGCACACACAAACGCTAATGAC 60.287 45.455 0.00 0.00 0.00 3.06
488 489 2.032030 GCACACACAAACGCTAATGACT 60.032 45.455 0.00 0.00 0.00 3.41
489 490 3.544651 CACACACAAACGCTAATGACTG 58.455 45.455 0.00 0.00 0.00 3.51
490 491 2.548057 ACACACAAACGCTAATGACTGG 59.452 45.455 0.00 0.00 0.00 4.00
491 492 2.805671 CACACAAACGCTAATGACTGGA 59.194 45.455 0.00 0.00 0.00 3.86
492 493 3.067106 ACACAAACGCTAATGACTGGAG 58.933 45.455 0.00 0.00 0.00 3.86
493 494 3.244078 ACACAAACGCTAATGACTGGAGA 60.244 43.478 0.00 0.00 0.00 3.71
494 495 3.935203 CACAAACGCTAATGACTGGAGAT 59.065 43.478 0.00 0.00 0.00 2.75
495 496 5.109210 CACAAACGCTAATGACTGGAGATA 58.891 41.667 0.00 0.00 0.00 1.98
496 497 5.005779 CACAAACGCTAATGACTGGAGATAC 59.994 44.000 0.00 0.00 0.00 2.24
497 498 4.323553 AACGCTAATGACTGGAGATACC 57.676 45.455 0.00 0.00 39.54 2.73
513 514 8.561536 TGGAGATACCATTATCTTTCTAACCA 57.438 34.615 0.00 0.00 43.93 3.67
514 515 9.170890 TGGAGATACCATTATCTTTCTAACCAT 57.829 33.333 0.00 0.00 43.93 3.55
526 527 3.769189 TCTAACCATACTGAGGACCCA 57.231 47.619 0.00 0.00 0.00 4.51
540 542 5.684704 TGAGGACCCATTATTGACATCTTC 58.315 41.667 0.00 0.00 0.00 2.87
555 557 2.627515 TCTTCATATGGCCAGCTCAC 57.372 50.000 13.05 0.00 0.00 3.51
562 564 1.237285 ATGGCCAGCTCACAACGTTC 61.237 55.000 13.05 0.00 0.00 3.95
583 585 1.068417 CGTTTGTCGAGTCACCCCA 59.932 57.895 0.00 0.00 42.86 4.96
591 593 3.516578 GAGTCACCCCAGAAACTCG 57.483 57.895 0.00 0.00 0.00 4.18
597 599 0.613853 ACCCCAGAAACTCGGATCGA 60.614 55.000 0.00 0.00 0.00 3.59
621 623 2.505118 GCTCTGCTCGACGTCCAC 60.505 66.667 10.58 0.00 0.00 4.02
624 626 1.578206 CTCTGCTCGACGTCCACAGA 61.578 60.000 21.59 21.59 36.08 3.41
626 628 1.004277 CTGCTCGACGTCCACAGAAC 61.004 60.000 17.68 3.58 0.00 3.01
772 803 3.350833 AGGGTCACATGAATGAAGAAGC 58.649 45.455 0.00 0.00 0.00 3.86
875 906 1.043816 TCTCATCTCTCGCCCAATCC 58.956 55.000 0.00 0.00 0.00 3.01
876 907 0.319383 CTCATCTCTCGCCCAATCCG 60.319 60.000 0.00 0.00 0.00 4.18
932 963 1.285078 ACAAGCTCCAATCCCCTAACC 59.715 52.381 0.00 0.00 0.00 2.85
1067 1100 0.754472 CCCATGTTCCATTCCATGCC 59.246 55.000 0.00 0.00 37.67 4.40
1106 1139 0.315869 CTGTTTGTCACGCACGGTTC 60.316 55.000 0.00 0.00 0.00 3.62
1132 1174 1.529438 GTGATTTGCGTCCAACTCGAA 59.471 47.619 0.00 0.00 34.42 3.71
1133 1175 2.159627 GTGATTTGCGTCCAACTCGAAT 59.840 45.455 0.00 0.00 34.42 3.34
1134 1176 3.369756 GTGATTTGCGTCCAACTCGAATA 59.630 43.478 0.00 0.00 34.42 1.75
1135 1177 3.369756 TGATTTGCGTCCAACTCGAATAC 59.630 43.478 0.00 0.00 34.42 1.89
1136 1178 2.736144 TTGCGTCCAACTCGAATACT 57.264 45.000 0.00 0.00 0.00 2.12
1137 1179 2.273370 TGCGTCCAACTCGAATACTC 57.727 50.000 0.00 0.00 0.00 2.59
1138 1180 1.189403 GCGTCCAACTCGAATACTCG 58.811 55.000 0.00 0.00 46.87 4.18
1234 1276 1.736645 CGACTTCATGTCCGCGGTT 60.737 57.895 27.15 8.73 42.49 4.44
1246 1288 2.380410 CGCGGTTTCCTTCAGGACG 61.380 63.158 0.00 0.00 45.39 4.79
1268 1310 1.617755 CGCGGTATGACATGATCGGC 61.618 60.000 0.00 4.33 0.00 5.54
1287 1332 0.099436 CGGAATGTAGCTTGCTTGGC 59.901 55.000 0.00 0.00 0.00 4.52
1907 1952 4.747529 GGTACGTGCCCGTCACCC 62.748 72.222 12.25 0.00 46.28 4.61
1918 1963 3.756727 GTCACCCCGTCCCGTCTC 61.757 72.222 0.00 0.00 0.00 3.36
1919 1964 3.975591 TCACCCCGTCCCGTCTCT 61.976 66.667 0.00 0.00 0.00 3.10
1920 1965 3.450115 CACCCCGTCCCGTCTCTC 61.450 72.222 0.00 0.00 0.00 3.20
1921 1966 3.659496 ACCCCGTCCCGTCTCTCT 61.659 66.667 0.00 0.00 0.00 3.10
1922 1967 2.829458 CCCCGTCCCGTCTCTCTC 60.829 72.222 0.00 0.00 0.00 3.20
1923 1968 2.829458 CCCGTCCCGTCTCTCTCC 60.829 72.222 0.00 0.00 0.00 3.71
2012 2059 0.609131 CCATGACCACAACCCACTCC 60.609 60.000 0.00 0.00 0.00 3.85
2577 2686 8.542953 TGATCGATTCTTTGTAATGAGAATTCG 58.457 33.333 0.00 6.05 41.39 3.34
2821 2943 4.713824 AAACATGCATGATCAACTCAGG 57.286 40.909 32.75 1.99 37.28 3.86
2896 3020 6.465948 ACTTCTGATGGCAATTGCAAAATTA 58.534 32.000 30.32 16.07 44.36 1.40
2937 3061 6.380846 TGCAGCCCATTATCAGAGTTTTTATT 59.619 34.615 0.00 0.00 0.00 1.40
2939 3063 7.436376 GCAGCCCATTATCAGAGTTTTTATTTC 59.564 37.037 0.00 0.00 0.00 2.17
3083 3210 5.125739 ACAACTTTTGTGGGTCGTATTTTCA 59.874 36.000 0.00 0.00 43.48 2.69
3136 3267 2.512692 TATGCTTGGTGCCAATCAGT 57.487 45.000 12.19 4.96 42.00 3.41
3168 3301 6.037610 GTGGTCAAGAATACATGGAACTCATC 59.962 42.308 0.00 0.00 32.92 2.92
3176 3309 4.970860 ACATGGAACTCATCAGGGATAG 57.029 45.455 0.00 0.00 32.92 2.08
3233 3366 3.406764 GTGTCTTTCCACTCTGAAGCAT 58.593 45.455 0.00 0.00 32.50 3.79
3289 3455 3.056304 CAAATGGCCCGTGTTTAACTTG 58.944 45.455 0.00 0.00 0.00 3.16
3348 3514 4.492646 TCTCTACTCAATGCCCCATGATA 58.507 43.478 0.00 0.00 0.00 2.15
3356 3522 5.316167 TCAATGCCCCATGATAAGACATAC 58.684 41.667 0.00 0.00 0.00 2.39
3357 3523 5.073554 TCAATGCCCCATGATAAGACATACT 59.926 40.000 0.00 0.00 0.00 2.12
3358 3524 4.356405 TGCCCCATGATAAGACATACTG 57.644 45.455 0.00 0.00 0.00 2.74
3359 3525 3.716353 TGCCCCATGATAAGACATACTGT 59.284 43.478 0.00 0.00 0.00 3.55
3360 3526 4.904853 TGCCCCATGATAAGACATACTGTA 59.095 41.667 0.00 0.00 0.00 2.74
3468 3634 3.490348 CAGGGTTCTTTGGATGACACTT 58.510 45.455 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 7.792364 TCTGAAGGTCTACAGGAAGATAAAA 57.208 36.000 0.00 0.00 35.20 1.52
18 19 7.792364 TTCTGAAGGTCTACAGGAAGATAAA 57.208 36.000 0.00 0.00 35.20 1.40
20 21 7.126061 TCATTCTGAAGGTCTACAGGAAGATA 58.874 38.462 1.70 0.00 35.20 1.98
21 22 5.960811 TCATTCTGAAGGTCTACAGGAAGAT 59.039 40.000 1.70 0.00 35.20 2.40
22 23 5.333581 TCATTCTGAAGGTCTACAGGAAGA 58.666 41.667 1.70 0.00 35.20 2.87
23 24 5.667539 TCATTCTGAAGGTCTACAGGAAG 57.332 43.478 1.70 0.00 35.20 3.46
24 25 6.627087 AATCATTCTGAAGGTCTACAGGAA 57.373 37.500 1.70 0.00 35.20 3.36
25 26 6.627087 AAATCATTCTGAAGGTCTACAGGA 57.373 37.500 1.70 0.00 35.20 3.86
26 27 7.693969 AAAAATCATTCTGAAGGTCTACAGG 57.306 36.000 1.70 0.00 35.20 4.00
47 48 0.895530 TTGGGTCGCACAACCAAAAA 59.104 45.000 0.00 0.00 41.02 1.94
48 49 2.579878 TTGGGTCGCACAACCAAAA 58.420 47.368 0.00 0.00 41.02 2.44
49 50 4.338815 TTGGGTCGCACAACCAAA 57.661 50.000 0.00 0.00 41.02 3.28
50 51 0.394488 TCTTTGGGTCGCACAACCAA 60.394 50.000 0.00 0.00 41.40 3.67
51 52 0.817634 CTCTTTGGGTCGCACAACCA 60.818 55.000 2.70 0.00 41.40 3.67
52 53 0.534203 TCTCTTTGGGTCGCACAACC 60.534 55.000 0.00 0.00 38.69 3.77
53 54 1.305201 TTCTCTTTGGGTCGCACAAC 58.695 50.000 0.00 0.00 0.00 3.32
54 55 1.879380 CATTCTCTTTGGGTCGCACAA 59.121 47.619 0.00 0.00 0.00 3.33
55 56 1.522668 CATTCTCTTTGGGTCGCACA 58.477 50.000 0.00 0.00 0.00 4.57
56 57 0.804989 CCATTCTCTTTGGGTCGCAC 59.195 55.000 0.00 0.00 0.00 5.34
57 58 0.400213 ACCATTCTCTTTGGGTCGCA 59.600 50.000 0.00 0.00 38.64 5.10
58 59 0.804989 CACCATTCTCTTTGGGTCGC 59.195 55.000 0.00 0.00 38.64 5.19
59 60 2.185004 ACACCATTCTCTTTGGGTCG 57.815 50.000 0.00 0.00 38.64 4.79
60 61 4.937201 AAAACACCATTCTCTTTGGGTC 57.063 40.909 0.00 0.00 38.64 4.46
61 62 4.141733 CCAAAAACACCATTCTCTTTGGGT 60.142 41.667 3.90 0.00 39.29 4.51
62 63 4.379652 CCAAAAACACCATTCTCTTTGGG 58.620 43.478 3.90 0.00 39.29 4.12
63 64 4.141733 ACCCAAAAACACCATTCTCTTTGG 60.142 41.667 4.72 4.72 41.51 3.28
64 65 5.022282 ACCCAAAAACACCATTCTCTTTG 57.978 39.130 0.00 0.00 0.00 2.77
65 66 5.045942 ACAACCCAAAAACACCATTCTCTTT 60.046 36.000 0.00 0.00 0.00 2.52
66 67 4.469586 ACAACCCAAAAACACCATTCTCTT 59.530 37.500 0.00 0.00 0.00 2.85
67 68 4.030216 ACAACCCAAAAACACCATTCTCT 58.970 39.130 0.00 0.00 0.00 3.10
68 69 4.400529 ACAACCCAAAAACACCATTCTC 57.599 40.909 0.00 0.00 0.00 2.87
69 70 4.100344 GGTACAACCCAAAAACACCATTCT 59.900 41.667 0.00 0.00 30.04 2.40
70 71 4.141914 TGGTACAACCCAAAAACACCATTC 60.142 41.667 0.00 0.00 37.50 2.67
71 72 3.775316 TGGTACAACCCAAAAACACCATT 59.225 39.130 0.00 0.00 37.50 3.16
72 73 3.375699 TGGTACAACCCAAAAACACCAT 58.624 40.909 0.00 0.00 37.50 3.55
73 74 2.816411 TGGTACAACCCAAAAACACCA 58.184 42.857 0.00 0.00 37.50 4.17
87 88 2.696707 ACTCGGTTTCAGACTTGGTACA 59.303 45.455 0.00 0.00 0.00 2.90
88 89 3.057734 CACTCGGTTTCAGACTTGGTAC 58.942 50.000 0.00 0.00 0.00 3.34
89 90 2.036733 CCACTCGGTTTCAGACTTGGTA 59.963 50.000 0.00 0.00 0.00 3.25
90 91 1.202651 CCACTCGGTTTCAGACTTGGT 60.203 52.381 0.00 0.00 0.00 3.67
91 92 1.070134 TCCACTCGGTTTCAGACTTGG 59.930 52.381 0.00 0.00 0.00 3.61
92 93 2.526304 TCCACTCGGTTTCAGACTTG 57.474 50.000 0.00 0.00 0.00 3.16
93 94 3.771577 AATCCACTCGGTTTCAGACTT 57.228 42.857 0.00 0.00 0.00 3.01
94 95 3.771577 AAATCCACTCGGTTTCAGACT 57.228 42.857 0.00 0.00 0.00 3.24
95 96 6.496338 AAATAAATCCACTCGGTTTCAGAC 57.504 37.500 0.00 0.00 0.00 3.51
96 97 7.519032 AAAAATAAATCCACTCGGTTTCAGA 57.481 32.000 0.00 0.00 0.00 3.27
145 146 9.486123 TCCATCTAACATTTGATTCCCAATAAA 57.514 29.630 0.00 0.00 34.23 1.40
146 147 9.659135 ATCCATCTAACATTTGATTCCCAATAA 57.341 29.630 0.00 0.00 34.23 1.40
147 148 9.300681 GATCCATCTAACATTTGATTCCCAATA 57.699 33.333 0.00 0.00 34.23 1.90
148 149 8.008922 AGATCCATCTAACATTTGATTCCCAAT 58.991 33.333 0.00 0.00 34.85 3.16
149 150 7.356680 AGATCCATCTAACATTTGATTCCCAA 58.643 34.615 0.00 0.00 34.85 4.12
150 151 6.914665 AGATCCATCTAACATTTGATTCCCA 58.085 36.000 0.00 0.00 34.85 4.37
151 152 7.939039 TGTAGATCCATCTAACATTTGATTCCC 59.061 37.037 0.00 0.00 40.77 3.97
152 153 8.908786 TGTAGATCCATCTAACATTTGATTCC 57.091 34.615 0.00 0.00 40.77 3.01
154 155 8.844244 GCTTGTAGATCCATCTAACATTTGATT 58.156 33.333 0.00 0.00 40.77 2.57
155 156 7.994911 TGCTTGTAGATCCATCTAACATTTGAT 59.005 33.333 0.00 0.00 40.77 2.57
156 157 7.337938 TGCTTGTAGATCCATCTAACATTTGA 58.662 34.615 0.00 0.00 40.77 2.69
157 158 7.558161 TGCTTGTAGATCCATCTAACATTTG 57.442 36.000 0.00 0.00 40.77 2.32
158 159 8.757982 ATTGCTTGTAGATCCATCTAACATTT 57.242 30.769 0.00 0.00 40.77 2.32
161 162 9.276590 CAATATTGCTTGTAGATCCATCTAACA 57.723 33.333 1.74 0.00 40.77 2.41
173 174 9.809690 CCATGGATGGTGCAATATTGCTTGTAG 62.810 44.444 33.89 17.57 45.80 2.74
174 175 8.135287 CCATGGATGGTGCAATATTGCTTGTA 62.135 42.308 33.89 20.72 45.80 2.41
175 176 7.421464 CCATGGATGGTGCAATATTGCTTGT 62.421 44.000 33.89 20.35 45.80 3.16
176 177 5.035992 CCATGGATGGTGCAATATTGCTTG 61.036 45.833 33.89 19.39 45.80 4.01
177 178 3.070446 CCATGGATGGTGCAATATTGCTT 59.930 43.478 33.89 19.56 45.80 3.91
178 179 2.631062 CCATGGATGGTGCAATATTGCT 59.369 45.455 33.89 18.74 45.80 3.91
179 180 3.034721 CCATGGATGGTGCAATATTGC 57.965 47.619 29.58 29.58 45.80 3.56
191 192 5.125900 TGCTGTTTAGATTTGTCCATGGATG 59.874 40.000 19.62 0.00 0.00 3.51
192 193 5.263599 TGCTGTTTAGATTTGTCCATGGAT 58.736 37.500 19.62 0.30 0.00 3.41
193 194 4.661222 TGCTGTTTAGATTTGTCCATGGA 58.339 39.130 11.44 11.44 0.00 3.41
194 195 4.460382 ACTGCTGTTTAGATTTGTCCATGG 59.540 41.667 4.97 4.97 0.00 3.66
195 196 5.633830 ACTGCTGTTTAGATTTGTCCATG 57.366 39.130 0.00 0.00 0.00 3.66
196 197 5.882557 CCTACTGCTGTTTAGATTTGTCCAT 59.117 40.000 0.09 0.00 0.00 3.41
197 198 5.245531 CCTACTGCTGTTTAGATTTGTCCA 58.754 41.667 0.09 0.00 0.00 4.02
198 199 4.095036 GCCTACTGCTGTTTAGATTTGTCC 59.905 45.833 0.09 0.00 36.87 4.02
199 200 4.201724 CGCCTACTGCTGTTTAGATTTGTC 60.202 45.833 0.09 0.00 38.05 3.18
200 201 3.684788 CGCCTACTGCTGTTTAGATTTGT 59.315 43.478 0.09 0.00 38.05 2.83
201 202 3.063997 CCGCCTACTGCTGTTTAGATTTG 59.936 47.826 0.09 0.00 38.05 2.32
202 203 3.270877 CCGCCTACTGCTGTTTAGATTT 58.729 45.455 0.09 0.00 38.05 2.17
203 204 2.236395 ACCGCCTACTGCTGTTTAGATT 59.764 45.455 0.09 0.00 33.09 2.40
204 205 1.831736 ACCGCCTACTGCTGTTTAGAT 59.168 47.619 0.09 0.00 33.09 1.98
205 206 1.263356 ACCGCCTACTGCTGTTTAGA 58.737 50.000 0.09 0.00 33.09 2.10
206 207 1.732259 CAACCGCCTACTGCTGTTTAG 59.268 52.381 0.09 0.00 43.83 1.85
207 208 1.609580 CCAACCGCCTACTGCTGTTTA 60.610 52.381 0.09 0.00 43.83 2.01
208 209 0.889186 CCAACCGCCTACTGCTGTTT 60.889 55.000 0.09 0.00 43.83 2.83
209 210 1.302511 CCAACCGCCTACTGCTGTT 60.303 57.895 0.09 0.00 46.72 3.16
210 211 1.553690 ATCCAACCGCCTACTGCTGT 61.554 55.000 0.66 0.66 39.30 4.40
211 212 0.392998 AATCCAACCGCCTACTGCTG 60.393 55.000 0.00 0.00 38.05 4.41
212 213 1.139058 CTAATCCAACCGCCTACTGCT 59.861 52.381 0.00 0.00 38.05 4.24
213 214 1.583054 CTAATCCAACCGCCTACTGC 58.417 55.000 0.00 0.00 0.00 4.40
214 215 1.583054 GCTAATCCAACCGCCTACTG 58.417 55.000 0.00 0.00 0.00 2.74
215 216 0.468648 GGCTAATCCAACCGCCTACT 59.531 55.000 0.00 0.00 39.42 2.57
216 217 0.878961 CGGCTAATCCAACCGCCTAC 60.879 60.000 0.00 0.00 40.55 3.18
217 218 1.444250 CGGCTAATCCAACCGCCTA 59.556 57.895 0.00 0.00 40.55 3.93
218 219 2.189521 CGGCTAATCCAACCGCCT 59.810 61.111 0.00 0.00 40.55 5.52
222 223 1.702491 GCACGACGGCTAATCCAACC 61.702 60.000 0.00 0.00 34.01 3.77
223 224 0.739813 AGCACGACGGCTAATCCAAC 60.740 55.000 8.77 0.00 43.70 3.77
224 225 0.818938 TAGCACGACGGCTAATCCAA 59.181 50.000 13.43 0.00 43.06 3.53
225 226 2.495809 TAGCACGACGGCTAATCCA 58.504 52.632 13.43 0.00 43.06 3.41
230 231 0.812549 TGACATTAGCACGACGGCTA 59.187 50.000 12.23 12.23 43.70 3.93
232 233 1.847818 TATGACATTAGCACGACGGC 58.152 50.000 0.00 0.00 0.00 5.68
233 234 3.608506 GCTATATGACATTAGCACGACGG 59.391 47.826 17.51 0.00 40.42 4.79
234 235 4.226761 TGCTATATGACATTAGCACGACG 58.773 43.478 19.60 0.00 44.32 5.12
239 240 8.224389 ACAATGTTTGCTATATGACATTAGCA 57.776 30.769 19.60 19.60 46.71 3.49
240 241 7.805071 GGACAATGTTTGCTATATGACATTAGC 59.195 37.037 16.40 16.40 39.85 3.09
241 242 8.839343 TGGACAATGTTTGCTATATGACATTAG 58.161 33.333 0.00 0.00 39.85 1.73
242 243 8.744568 TGGACAATGTTTGCTATATGACATTA 57.255 30.769 0.00 0.00 39.85 1.90
243 244 7.643569 TGGACAATGTTTGCTATATGACATT 57.356 32.000 0.00 0.00 41.85 2.71
244 245 7.503230 TCATGGACAATGTTTGCTATATGACAT 59.497 33.333 0.00 0.00 37.56 3.06
245 246 6.827762 TCATGGACAATGTTTGCTATATGACA 59.172 34.615 0.00 0.00 37.56 3.58
246 247 7.263100 TCATGGACAATGTTTGCTATATGAC 57.737 36.000 0.00 0.00 37.56 3.06
247 248 7.557358 ACTTCATGGACAATGTTTGCTATATGA 59.443 33.333 0.00 0.00 37.56 2.15
248 249 7.709947 ACTTCATGGACAATGTTTGCTATATG 58.290 34.615 0.00 0.00 37.56 1.78
249 250 7.886629 ACTTCATGGACAATGTTTGCTATAT 57.113 32.000 0.00 0.00 37.56 0.86
250 251 8.046708 AGTACTTCATGGACAATGTTTGCTATA 58.953 33.333 0.00 0.00 37.56 1.31
251 252 6.886459 AGTACTTCATGGACAATGTTTGCTAT 59.114 34.615 0.00 0.00 37.56 2.97
252 253 6.237901 AGTACTTCATGGACAATGTTTGCTA 58.762 36.000 0.00 0.00 37.56 3.49
253 254 5.072741 AGTACTTCATGGACAATGTTTGCT 58.927 37.500 0.00 0.00 37.56 3.91
254 255 5.376854 AGTACTTCATGGACAATGTTTGC 57.623 39.130 0.00 0.00 37.56 3.68
255 256 6.381801 GGAAGTACTTCATGGACAATGTTTG 58.618 40.000 31.30 0.00 41.20 2.93
256 257 5.181245 CGGAAGTACTTCATGGACAATGTTT 59.819 40.000 31.30 0.00 41.20 2.83
257 258 4.695455 CGGAAGTACTTCATGGACAATGTT 59.305 41.667 31.30 0.00 41.20 2.71
258 259 4.020573 TCGGAAGTACTTCATGGACAATGT 60.021 41.667 31.30 0.00 41.20 2.71
259 260 4.503910 TCGGAAGTACTTCATGGACAATG 58.496 43.478 31.30 12.57 41.20 2.82
260 261 4.819105 TCGGAAGTACTTCATGGACAAT 57.181 40.909 31.30 0.00 41.20 2.71
261 262 4.610605 TTCGGAAGTACTTCATGGACAA 57.389 40.909 31.30 14.06 41.20 3.18
262 263 4.819105 ATTCGGAAGTACTTCATGGACA 57.181 40.909 31.30 17.17 41.20 4.02
263 264 7.787725 ATTTATTCGGAAGTACTTCATGGAC 57.212 36.000 31.30 15.99 41.20 4.02
275 276 9.651718 GCTCTGTTTACAATATTTATTCGGAAG 57.348 33.333 0.00 0.00 0.00 3.46
276 277 9.391006 AGCTCTGTTTACAATATTTATTCGGAA 57.609 29.630 0.00 0.00 0.00 4.30
277 278 8.826710 CAGCTCTGTTTACAATATTTATTCGGA 58.173 33.333 0.00 0.00 0.00 4.55
278 279 8.826710 TCAGCTCTGTTTACAATATTTATTCGG 58.173 33.333 0.00 0.00 0.00 4.30
284 285 9.077885 TCCTTTTCAGCTCTGTTTACAATATTT 57.922 29.630 0.00 0.00 0.00 1.40
285 286 8.635765 TCCTTTTCAGCTCTGTTTACAATATT 57.364 30.769 0.00 0.00 0.00 1.28
286 287 8.680903 CATCCTTTTCAGCTCTGTTTACAATAT 58.319 33.333 0.00 0.00 0.00 1.28
287 288 7.121168 CCATCCTTTTCAGCTCTGTTTACAATA 59.879 37.037 0.00 0.00 0.00 1.90
288 289 6.071728 CCATCCTTTTCAGCTCTGTTTACAAT 60.072 38.462 0.00 0.00 0.00 2.71
289 290 5.241506 CCATCCTTTTCAGCTCTGTTTACAA 59.758 40.000 0.00 0.00 0.00 2.41
290 291 4.761739 CCATCCTTTTCAGCTCTGTTTACA 59.238 41.667 0.00 0.00 0.00 2.41
291 292 4.762251 ACCATCCTTTTCAGCTCTGTTTAC 59.238 41.667 0.00 0.00 0.00 2.01
292 293 4.761739 CACCATCCTTTTCAGCTCTGTTTA 59.238 41.667 0.00 0.00 0.00 2.01
293 294 3.571401 CACCATCCTTTTCAGCTCTGTTT 59.429 43.478 0.00 0.00 0.00 2.83
294 295 3.152341 CACCATCCTTTTCAGCTCTGTT 58.848 45.455 0.00 0.00 0.00 3.16
295 296 2.107204 ACACCATCCTTTTCAGCTCTGT 59.893 45.455 0.00 0.00 0.00 3.41
296 297 2.746362 GACACCATCCTTTTCAGCTCTG 59.254 50.000 0.00 0.00 0.00 3.35
297 298 2.613977 CGACACCATCCTTTTCAGCTCT 60.614 50.000 0.00 0.00 0.00 4.09
298 299 1.734465 CGACACCATCCTTTTCAGCTC 59.266 52.381 0.00 0.00 0.00 4.09
299 300 1.347707 TCGACACCATCCTTTTCAGCT 59.652 47.619 0.00 0.00 0.00 4.24
300 301 1.464997 GTCGACACCATCCTTTTCAGC 59.535 52.381 11.55 0.00 0.00 4.26
301 302 2.480419 GTGTCGACACCATCCTTTTCAG 59.520 50.000 33.62 0.00 40.85 3.02
302 303 2.489971 GTGTCGACACCATCCTTTTCA 58.510 47.619 33.62 0.00 40.85 2.69
313 314 2.257676 GAGGACGGGTGTCGACAC 59.742 66.667 35.26 35.26 46.49 3.67
314 315 3.359523 CGAGGACGGGTGTCGACA 61.360 66.667 15.76 15.76 46.49 4.35
315 316 3.360340 ACGAGGACGGGTGTCGAC 61.360 66.667 9.11 9.11 46.49 4.20
316 317 3.359523 CACGAGGACGGGTGTCGA 61.360 66.667 7.06 0.00 46.49 4.20
323 324 4.477975 GCGGAGACACGAGGACGG 62.478 72.222 0.00 0.00 44.46 4.79
324 325 4.477975 GGCGGAGACACGAGGACG 62.478 72.222 0.00 0.00 45.75 4.79
325 326 3.343788 CTGGCGGAGACACGAGGAC 62.344 68.421 0.00 0.00 34.89 3.85
326 327 3.062466 CTGGCGGAGACACGAGGA 61.062 66.667 0.00 0.00 34.89 3.71
327 328 2.154798 TTTCTGGCGGAGACACGAGG 62.155 60.000 0.00 0.00 34.89 4.63
328 329 0.319555 TTTTCTGGCGGAGACACGAG 60.320 55.000 0.00 0.00 34.89 4.18
329 330 0.599204 GTTTTCTGGCGGAGACACGA 60.599 55.000 0.00 0.00 34.89 4.35
330 331 0.878523 TGTTTTCTGGCGGAGACACG 60.879 55.000 9.68 0.00 34.89 4.49
331 332 0.868406 CTGTTTTCTGGCGGAGACAC 59.132 55.000 9.68 3.36 34.89 3.67
333 334 0.955919 CCCTGTTTTCTGGCGGAGAC 60.956 60.000 0.00 0.51 37.55 3.36
334 335 1.374947 CCCTGTTTTCTGGCGGAGA 59.625 57.895 0.00 0.00 37.55 3.71
335 336 1.675641 CCCCTGTTTTCTGGCGGAG 60.676 63.158 0.00 0.00 37.55 4.63
336 337 2.434331 CCCCTGTTTTCTGGCGGA 59.566 61.111 0.00 0.00 37.55 5.54
337 338 3.373565 GCCCCTGTTTTCTGGCGG 61.374 66.667 0.00 0.00 37.55 6.13
339 340 1.667722 CTTGCCCCTGTTTTCTGGC 59.332 57.895 0.00 0.00 44.27 4.85
340 341 0.178964 TCCTTGCCCCTGTTTTCTGG 60.179 55.000 0.00 0.00 38.43 3.86
341 342 1.703411 TTCCTTGCCCCTGTTTTCTG 58.297 50.000 0.00 0.00 0.00 3.02
342 343 2.319844 CTTTCCTTGCCCCTGTTTTCT 58.680 47.619 0.00 0.00 0.00 2.52
343 344 1.344438 CCTTTCCTTGCCCCTGTTTTC 59.656 52.381 0.00 0.00 0.00 2.29
344 345 1.343985 ACCTTTCCTTGCCCCTGTTTT 60.344 47.619 0.00 0.00 0.00 2.43
345 346 0.264657 ACCTTTCCTTGCCCCTGTTT 59.735 50.000 0.00 0.00 0.00 2.83
346 347 0.469892 CACCTTTCCTTGCCCCTGTT 60.470 55.000 0.00 0.00 0.00 3.16
347 348 1.153756 CACCTTTCCTTGCCCCTGT 59.846 57.895 0.00 0.00 0.00 4.00
348 349 0.178964 TTCACCTTTCCTTGCCCCTG 60.179 55.000 0.00 0.00 0.00 4.45
349 350 0.560688 TTTCACCTTTCCTTGCCCCT 59.439 50.000 0.00 0.00 0.00 4.79
350 351 1.344438 CTTTTCACCTTTCCTTGCCCC 59.656 52.381 0.00 0.00 0.00 5.80
351 352 1.344438 CCTTTTCACCTTTCCTTGCCC 59.656 52.381 0.00 0.00 0.00 5.36
352 353 1.270305 GCCTTTTCACCTTTCCTTGCC 60.270 52.381 0.00 0.00 0.00 4.52
353 354 1.270305 GGCCTTTTCACCTTTCCTTGC 60.270 52.381 0.00 0.00 0.00 4.01
354 355 1.344438 GGGCCTTTTCACCTTTCCTTG 59.656 52.381 0.84 0.00 0.00 3.61
355 356 1.220493 AGGGCCTTTTCACCTTTCCTT 59.780 47.619 0.00 0.00 0.00 3.36
356 357 0.860457 AGGGCCTTTTCACCTTTCCT 59.140 50.000 0.00 0.00 0.00 3.36
357 358 1.717032 AAGGGCCTTTTCACCTTTCC 58.283 50.000 14.48 0.00 41.65 3.13
376 377 7.432350 AATAAAGCCATTTCATTCGCAAAAA 57.568 28.000 0.00 0.00 0.00 1.94
377 378 7.172190 TGAAATAAAGCCATTTCATTCGCAAAA 59.828 29.630 12.32 0.00 45.46 2.44
378 379 6.648310 TGAAATAAAGCCATTTCATTCGCAAA 59.352 30.769 12.32 0.00 45.46 3.68
379 380 6.162079 TGAAATAAAGCCATTTCATTCGCAA 58.838 32.000 12.32 0.00 45.46 4.85
380 381 5.718146 TGAAATAAAGCCATTTCATTCGCA 58.282 33.333 12.32 0.00 45.46 5.10
387 388 5.521372 GTGGCAGATGAAATAAAGCCATTTC 59.479 40.000 7.25 8.40 45.30 2.17
388 389 5.188359 AGTGGCAGATGAAATAAAGCCATTT 59.812 36.000 7.25 0.00 45.30 2.32
389 390 4.713321 AGTGGCAGATGAAATAAAGCCATT 59.287 37.500 7.25 0.04 45.30 3.16
390 391 4.284178 AGTGGCAGATGAAATAAAGCCAT 58.716 39.130 7.25 0.00 45.30 4.40
391 392 3.700538 AGTGGCAGATGAAATAAAGCCA 58.299 40.909 0.00 0.00 42.77 4.75
392 393 6.039717 TGAATAGTGGCAGATGAAATAAAGCC 59.960 38.462 0.00 0.00 37.89 4.35
393 394 7.031226 TGAATAGTGGCAGATGAAATAAAGC 57.969 36.000 0.00 0.00 0.00 3.51
394 395 9.859427 TTTTGAATAGTGGCAGATGAAATAAAG 57.141 29.630 0.00 0.00 0.00 1.85
398 399 7.983484 GGATTTTTGAATAGTGGCAGATGAAAT 59.017 33.333 0.00 0.00 0.00 2.17
399 400 7.178983 AGGATTTTTGAATAGTGGCAGATGAAA 59.821 33.333 0.00 0.00 0.00 2.69
400 401 6.664816 AGGATTTTTGAATAGTGGCAGATGAA 59.335 34.615 0.00 0.00 0.00 2.57
401 402 6.189859 AGGATTTTTGAATAGTGGCAGATGA 58.810 36.000 0.00 0.00 0.00 2.92
402 403 6.095860 TGAGGATTTTTGAATAGTGGCAGATG 59.904 38.462 0.00 0.00 0.00 2.90
403 404 6.189859 TGAGGATTTTTGAATAGTGGCAGAT 58.810 36.000 0.00 0.00 0.00 2.90
404 405 5.569355 TGAGGATTTTTGAATAGTGGCAGA 58.431 37.500 0.00 0.00 0.00 4.26
405 406 5.416952 ACTGAGGATTTTTGAATAGTGGCAG 59.583 40.000 0.00 0.00 0.00 4.85
406 407 5.324409 ACTGAGGATTTTTGAATAGTGGCA 58.676 37.500 0.00 0.00 0.00 4.92
407 408 5.904362 ACTGAGGATTTTTGAATAGTGGC 57.096 39.130 0.00 0.00 0.00 5.01
408 409 7.177392 AGGAAACTGAGGATTTTTGAATAGTGG 59.823 37.037 0.00 0.00 41.13 4.00
409 410 8.115490 AGGAAACTGAGGATTTTTGAATAGTG 57.885 34.615 0.00 0.00 41.13 2.74
410 411 8.712228 AAGGAAACTGAGGATTTTTGAATAGT 57.288 30.769 0.00 0.00 42.68 2.12
411 412 9.987272 AAAAGGAAACTGAGGATTTTTGAATAG 57.013 29.630 0.00 0.00 42.68 1.73
443 444 9.847706 TGCATTTATATATGAACGTTTGTGTTT 57.152 25.926 0.46 0.00 30.75 2.83
444 445 9.284594 GTGCATTTATATATGAACGTTTGTGTT 57.715 29.630 0.46 0.00 34.02 3.32
445 446 8.454894 TGTGCATTTATATATGAACGTTTGTGT 58.545 29.630 0.46 0.00 36.94 3.72
446 447 8.733128 GTGTGCATTTATATATGAACGTTTGTG 58.267 33.333 0.46 0.00 36.94 3.33
447 448 8.454894 TGTGTGCATTTATATATGAACGTTTGT 58.545 29.630 0.46 0.00 36.94 2.83
448 449 8.733128 GTGTGTGCATTTATATATGAACGTTTG 58.267 33.333 0.46 0.00 36.94 2.93
449 450 8.454894 TGTGTGTGCATTTATATATGAACGTTT 58.545 29.630 0.46 0.00 36.94 3.60
450 451 7.980062 TGTGTGTGCATTTATATATGAACGTT 58.020 30.769 0.00 0.00 36.94 3.99
451 452 7.546778 TGTGTGTGCATTTATATATGAACGT 57.453 32.000 7.29 0.00 36.94 3.99
452 453 8.733128 GTTTGTGTGTGCATTTATATATGAACG 58.267 33.333 7.29 0.00 36.94 3.95
453 454 8.733128 CGTTTGTGTGTGCATTTATATATGAAC 58.267 33.333 7.21 7.21 35.06 3.18
454 455 7.430793 GCGTTTGTGTGTGCATTTATATATGAA 59.569 33.333 7.29 0.00 0.00 2.57
455 456 6.909895 GCGTTTGTGTGTGCATTTATATATGA 59.090 34.615 7.29 0.00 0.00 2.15
456 457 6.912051 AGCGTTTGTGTGTGCATTTATATATG 59.088 34.615 0.00 0.00 0.00 1.78
457 458 7.026631 AGCGTTTGTGTGTGCATTTATATAT 57.973 32.000 0.00 0.00 0.00 0.86
458 459 6.429791 AGCGTTTGTGTGTGCATTTATATA 57.570 33.333 0.00 0.00 0.00 0.86
459 460 5.309323 AGCGTTTGTGTGTGCATTTATAT 57.691 34.783 0.00 0.00 0.00 0.86
460 461 4.757799 AGCGTTTGTGTGTGCATTTATA 57.242 36.364 0.00 0.00 0.00 0.98
461 462 3.641437 AGCGTTTGTGTGTGCATTTAT 57.359 38.095 0.00 0.00 0.00 1.40
462 463 4.553756 TTAGCGTTTGTGTGTGCATTTA 57.446 36.364 0.00 0.00 0.00 1.40
463 464 3.428746 TTAGCGTTTGTGTGTGCATTT 57.571 38.095 0.00 0.00 0.00 2.32
464 465 3.004210 TCATTAGCGTTTGTGTGTGCATT 59.996 39.130 0.00 0.00 0.00 3.56
465 466 2.551887 TCATTAGCGTTTGTGTGTGCAT 59.448 40.909 0.00 0.00 0.00 3.96
466 467 1.943340 TCATTAGCGTTTGTGTGTGCA 59.057 42.857 0.00 0.00 0.00 4.57
467 468 2.032030 AGTCATTAGCGTTTGTGTGTGC 60.032 45.455 0.00 0.00 0.00 4.57
468 469 3.544651 CAGTCATTAGCGTTTGTGTGTG 58.455 45.455 0.00 0.00 0.00 3.82
469 470 2.548057 CCAGTCATTAGCGTTTGTGTGT 59.452 45.455 0.00 0.00 0.00 3.72
470 471 2.805671 TCCAGTCATTAGCGTTTGTGTG 59.194 45.455 0.00 0.00 0.00 3.82
471 472 3.067106 CTCCAGTCATTAGCGTTTGTGT 58.933 45.455 0.00 0.00 0.00 3.72
472 473 3.325870 TCTCCAGTCATTAGCGTTTGTG 58.674 45.455 0.00 0.00 0.00 3.33
473 474 3.678056 TCTCCAGTCATTAGCGTTTGT 57.322 42.857 0.00 0.00 0.00 2.83
474 475 4.508124 GGTATCTCCAGTCATTAGCGTTTG 59.492 45.833 0.00 0.00 35.97 2.93
475 476 4.161565 TGGTATCTCCAGTCATTAGCGTTT 59.838 41.667 0.00 0.00 41.93 3.60
476 477 3.704566 TGGTATCTCCAGTCATTAGCGTT 59.295 43.478 0.00 0.00 41.93 4.84
477 478 3.296854 TGGTATCTCCAGTCATTAGCGT 58.703 45.455 0.00 0.00 41.93 5.07
495 496 8.432805 CCTCAGTATGGTTAGAAAGATAATGGT 58.567 37.037 0.00 0.00 36.16 3.55
496 497 8.651389 TCCTCAGTATGGTTAGAAAGATAATGG 58.349 37.037 0.00 0.00 36.16 3.16
497 498 9.482627 GTCCTCAGTATGGTTAGAAAGATAATG 57.517 37.037 0.00 0.00 36.16 1.90
498 499 8.652290 GGTCCTCAGTATGGTTAGAAAGATAAT 58.348 37.037 0.00 0.00 36.16 1.28
499 500 7.070821 GGGTCCTCAGTATGGTTAGAAAGATAA 59.929 40.741 0.00 0.00 36.16 1.75
500 501 6.553852 GGGTCCTCAGTATGGTTAGAAAGATA 59.446 42.308 0.00 0.00 36.16 1.98
501 502 5.367060 GGGTCCTCAGTATGGTTAGAAAGAT 59.633 44.000 0.00 0.00 36.16 2.40
502 503 4.715297 GGGTCCTCAGTATGGTTAGAAAGA 59.285 45.833 0.00 0.00 36.16 2.52
503 504 4.469945 TGGGTCCTCAGTATGGTTAGAAAG 59.530 45.833 0.00 0.00 36.16 2.62
504 505 4.431378 TGGGTCCTCAGTATGGTTAGAAA 58.569 43.478 0.00 0.00 36.16 2.52
505 506 4.069312 TGGGTCCTCAGTATGGTTAGAA 57.931 45.455 0.00 0.00 36.16 2.10
506 507 3.769189 TGGGTCCTCAGTATGGTTAGA 57.231 47.619 0.00 0.00 36.16 2.10
507 508 6.688073 ATAATGGGTCCTCAGTATGGTTAG 57.312 41.667 0.00 0.00 36.16 2.34
508 509 6.617784 TCAATAATGGGTCCTCAGTATGGTTA 59.382 38.462 2.38 0.00 36.16 2.85
509 510 5.431731 TCAATAATGGGTCCTCAGTATGGTT 59.568 40.000 2.38 0.00 36.16 3.67
510 511 4.975147 TCAATAATGGGTCCTCAGTATGGT 59.025 41.667 2.38 0.00 36.16 3.55
511 512 5.163205 TGTCAATAATGGGTCCTCAGTATGG 60.163 44.000 2.38 0.53 36.16 2.74
512 513 5.928976 TGTCAATAATGGGTCCTCAGTATG 58.071 41.667 2.38 0.00 29.81 2.39
513 514 6.560304 AGATGTCAATAATGGGTCCTCAGTAT 59.440 38.462 0.00 0.00 30.43 2.12
514 515 5.905331 AGATGTCAATAATGGGTCCTCAGTA 59.095 40.000 0.00 0.00 0.00 2.74
515 516 4.723789 AGATGTCAATAATGGGTCCTCAGT 59.276 41.667 0.00 0.00 0.00 3.41
520 521 7.121759 CCATATGAAGATGTCAATAATGGGTCC 59.878 40.741 3.65 0.00 40.50 4.46
526 527 6.152323 GCTGGCCATATGAAGATGTCAATAAT 59.848 38.462 5.51 0.00 40.50 1.28
540 542 0.659427 CGTTGTGAGCTGGCCATATG 59.341 55.000 5.51 0.00 0.00 1.78
562 564 0.580104 GGGTGACTCGACAAACGTTG 59.420 55.000 0.00 0.00 43.13 4.10
566 568 0.391597 TCTGGGGTGACTCGACAAAC 59.608 55.000 0.00 0.00 0.00 2.93
583 585 1.271656 ACCGTTTCGATCCGAGTTTCT 59.728 47.619 5.88 0.00 37.14 2.52
591 593 1.696832 GCAGAGCACCGTTTCGATCC 61.697 60.000 0.00 0.00 0.00 3.36
597 599 1.664965 GTCGAGCAGAGCACCGTTT 60.665 57.895 0.00 0.00 0.00 3.60
621 623 2.030457 GGATAATGTGCGTTCCGTTCTG 59.970 50.000 0.00 0.00 0.00 3.02
624 626 2.006888 CTGGATAATGTGCGTTCCGTT 58.993 47.619 0.00 0.00 0.00 4.44
626 628 0.304705 GCTGGATAATGTGCGTTCCG 59.695 55.000 0.00 0.00 0.00 4.30
635 637 1.612469 CGCTCGCTCGCTGGATAATG 61.612 60.000 0.00 0.00 0.00 1.90
637 639 2.026157 CGCTCGCTCGCTGGATAA 59.974 61.111 0.00 0.00 0.00 1.75
644 646 2.655364 TAATGCTCGCTCGCTCGC 60.655 61.111 0.00 0.00 0.00 5.03
645 647 0.936764 ATGTAATGCTCGCTCGCTCG 60.937 55.000 0.00 0.00 0.00 5.03
646 648 0.781191 GATGTAATGCTCGCTCGCTC 59.219 55.000 0.00 0.00 0.00 5.03
647 649 0.103026 TGATGTAATGCTCGCTCGCT 59.897 50.000 0.00 0.00 0.00 4.93
648 650 0.930310 TTGATGTAATGCTCGCTCGC 59.070 50.000 0.00 0.00 0.00 5.03
772 803 1.257936 CGGTCGATATGTGGCTTTTCG 59.742 52.381 0.00 0.00 0.00 3.46
875 906 0.179073 AATTGAGATCGTGAGGCCCG 60.179 55.000 0.00 0.00 0.00 6.13
876 907 1.587547 GAATTGAGATCGTGAGGCCC 58.412 55.000 0.00 0.00 0.00 5.80
932 963 0.389426 GGGCGTGGCTGTATATACGG 60.389 60.000 16.18 16.18 37.06 4.02
990 1021 2.398554 CGACGCCATGTCCAAAGGG 61.399 63.158 0.00 0.00 45.23 3.95
1067 1100 1.404315 GGGAAGAACTGTAGGACGCAG 60.404 57.143 0.00 0.00 39.67 5.18
1106 1139 3.498397 AGTTGGACGCAAATCACTTACAG 59.502 43.478 0.00 0.00 0.00 2.74
1246 1288 1.976728 CGATCATGTCATACCGCGTAC 59.023 52.381 4.92 0.00 0.00 3.67
1268 1310 0.099436 GCCAAGCAAGCTACATTCCG 59.901 55.000 0.00 0.00 0.00 4.30
1324 1369 2.962827 CTCACCTGCAAGCACAGCG 61.963 63.158 0.00 0.00 36.29 5.18
1382 1427 0.670546 CGTTGATCGCCACCTTGAGT 60.671 55.000 0.00 0.00 0.00 3.41
1909 1954 0.323542 TTGAGGGAGAGAGACGGGAC 60.324 60.000 0.00 0.00 0.00 4.46
1910 1955 0.323542 GTTGAGGGAGAGAGACGGGA 60.324 60.000 0.00 0.00 0.00 5.14
1911 1956 0.323908 AGTTGAGGGAGAGAGACGGG 60.324 60.000 0.00 0.00 0.00 5.28
1913 1958 1.827681 TCAGTTGAGGGAGAGAGACG 58.172 55.000 0.00 0.00 0.00 4.18
1914 1959 3.766591 TGATTCAGTTGAGGGAGAGAGAC 59.233 47.826 0.00 0.00 0.00 3.36
1917 1962 4.163427 AGTTGATTCAGTTGAGGGAGAGA 58.837 43.478 0.00 0.00 0.00 3.10
1918 1963 4.550076 AGTTGATTCAGTTGAGGGAGAG 57.450 45.455 0.00 0.00 0.00 3.20
1919 1964 4.594920 AGAAGTTGATTCAGTTGAGGGAGA 59.405 41.667 0.00 0.00 40.67 3.71
1920 1965 4.904241 AGAAGTTGATTCAGTTGAGGGAG 58.096 43.478 0.00 0.00 40.67 4.30
1921 1966 4.982241 AGAAGTTGATTCAGTTGAGGGA 57.018 40.909 0.00 0.00 40.67 4.20
1922 1967 7.229506 ACTTAAAGAAGTTGATTCAGTTGAGGG 59.770 37.037 0.00 0.00 43.70 4.30
1923 1968 8.159344 ACTTAAAGAAGTTGATTCAGTTGAGG 57.841 34.615 0.00 0.00 43.70 3.86
2003 2050 2.590114 GCCGGTGTAGGAGTGGGTT 61.590 63.158 1.90 0.00 0.00 4.11
2012 2059 2.490217 CTCTGGTCGCCGGTGTAG 59.510 66.667 16.01 12.01 0.00 2.74
2466 2575 0.521735 GGCGTTCACTTCCATTGGTC 59.478 55.000 1.86 0.00 0.00 4.02
2496 2605 4.265073 GAGTCACTTCACAGGGCAATAAT 58.735 43.478 0.00 0.00 0.00 1.28
2497 2606 3.559171 GGAGTCACTTCACAGGGCAATAA 60.559 47.826 0.00 0.00 0.00 1.40
2498 2607 2.027192 GGAGTCACTTCACAGGGCAATA 60.027 50.000 0.00 0.00 0.00 1.90
2577 2686 2.815478 CTGTTGGGAGCTCGATACTTC 58.185 52.381 7.83 0.00 0.00 3.01
2821 2943 6.721321 TCGTGTATGGTTCAAACTTTTCTTC 58.279 36.000 0.00 0.00 0.00 2.87
2896 3020 0.469705 TGCATGGTTGTGCTCCCTTT 60.470 50.000 0.00 0.00 45.27 3.11
2937 3061 7.366513 TGATAATGAGTTTTCGCACAAATGAA 58.633 30.769 0.00 0.00 31.53 2.57
2939 3063 7.022979 TCTGATAATGAGTTTTCGCACAAATG 58.977 34.615 0.00 0.00 31.53 2.32
2944 3068 5.786401 ACTCTGATAATGAGTTTTCGCAC 57.214 39.130 0.00 0.00 41.45 5.34
2968 3092 2.627945 TGTGAGTCAGTTTGTGTGGAC 58.372 47.619 0.00 0.00 0.00 4.02
3018 3142 2.693210 TCATGCCATCATCCACCTAGA 58.307 47.619 0.00 0.00 0.00 2.43
3136 3267 4.681074 TGTATTCTTGACCACTCACACA 57.319 40.909 0.00 0.00 0.00 3.72
3168 3301 4.897509 TGGTCTGCAATATCTATCCCTG 57.102 45.455 0.00 0.00 0.00 4.45
3176 3309 5.008911 TGTGCATTGTATGGTCTGCAATATC 59.991 40.000 0.00 0.00 45.34 1.63
3233 3366 5.733676 TCGAGATGTTTTGATCCATCTGAA 58.266 37.500 14.59 3.02 45.87 3.02
3237 3370 6.705381 AGAGATTCGAGATGTTTTGATCCATC 59.295 38.462 2.44 2.44 38.17 3.51
3358 3524 9.907576 GCTATTTCATCGATAAATACTGCATAC 57.092 33.333 0.00 0.00 0.00 2.39
3359 3525 9.651913 TGCTATTTCATCGATAAATACTGCATA 57.348 29.630 17.87 1.78 30.93 3.14
3360 3526 8.552083 TGCTATTTCATCGATAAATACTGCAT 57.448 30.769 17.87 0.97 30.93 3.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.