Multiple sequence alignment - TraesCS2A01G339300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G339300 chr2A 100.000 2309 0 0 1 2309 573368291 573365983 0.000000e+00 4265
1 TraesCS2A01G339300 chr2A 90.426 282 27 0 1863 2144 722516282 722516001 2.800000e-99 372
2 TraesCS2A01G339300 chr2B 90.116 1720 65 29 6 1660 488867792 488869471 0.000000e+00 2137
3 TraesCS2A01G339300 chr2B 92.391 184 12 2 1687 1868 488869599 488869782 6.330000e-66 261
4 TraesCS2A01G339300 chr2D 92.564 901 49 5 978 1861 416861653 416862552 0.000000e+00 1277
5 TraesCS2A01G339300 chr2D 85.756 1032 34 38 3 962 416860608 416861598 0.000000e+00 987
6 TraesCS2A01G339300 chr3A 94.161 274 16 0 1868 2141 437663475 437663748 3.550000e-113 418
7 TraesCS2A01G339300 chr4B 92.446 278 19 2 1866 2143 325992704 325992429 1.660000e-106 396
8 TraesCS2A01G339300 chr5B 91.667 276 23 0 1866 2141 332325397 332325122 1.290000e-102 383
9 TraesCS2A01G339300 chr5B 91.007 278 23 2 1864 2141 320411188 320410913 7.790000e-100 374
10 TraesCS2A01G339300 chr1B 91.039 279 25 0 1866 2144 547278670 547278948 6.020000e-101 377
11 TraesCS2A01G339300 chr7A 91.209 273 24 0 1869 2141 208528427 208528155 2.800000e-99 372
12 TraesCS2A01G339300 chr4A 90.141 284 28 0 1862 2145 445073028 445072745 1.010000e-98 370
13 TraesCS2A01G339300 chr3B 90.876 274 25 0 1868 2141 365497790 365498063 3.620000e-98 368


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G339300 chr2A 573365983 573368291 2308 True 4265 4265 100.0000 1 2309 1 chr2A.!!$R1 2308
1 TraesCS2A01G339300 chr2B 488867792 488869782 1990 False 1199 2137 91.2535 6 1868 2 chr2B.!!$F1 1862
2 TraesCS2A01G339300 chr2D 416860608 416862552 1944 False 1132 1277 89.1600 3 1861 2 chr2D.!!$F1 1858


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
750 829 0.170116 GTTGGGTGTGTGTGTGTGTG 59.83 55.0 0.0 0.0 0.0 3.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2145 2391 0.242017 ACGAGCGGTGTGGTACTAAC 59.758 55.0 0.0 0.0 0.0 2.34 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 84 1.873295 CGCGCTTTAAGTTAAACCGG 58.127 50.000 19.48 0.00 29.88 5.28
91 92 5.716094 CTTTAAGTTAAACCGGGGGATTTG 58.284 41.667 6.32 0.00 0.00 2.32
112 113 1.200252 GGAAAGAGAAAGCGAAAGGGC 59.800 52.381 0.00 0.00 0.00 5.19
146 147 4.374702 CAGCGGCAACAGCGTGAC 62.375 66.667 1.45 0.00 40.31 3.67
205 224 1.750399 CCCCACTCAATCCAAGGCG 60.750 63.158 0.00 0.00 0.00 5.52
254 294 1.928706 GAACATAAAGCGGCGGCCAA 61.929 55.000 20.71 0.00 41.24 4.52
342 386 4.390556 AGCCGTGCTCCTCCTCCT 62.391 66.667 0.00 0.00 30.62 3.69
343 387 3.844090 GCCGTGCTCCTCCTCCTC 61.844 72.222 0.00 0.00 0.00 3.71
344 388 3.151022 CCGTGCTCCTCCTCCTCC 61.151 72.222 0.00 0.00 0.00 4.30
345 389 2.043450 CGTGCTCCTCCTCCTCCT 60.043 66.667 0.00 0.00 0.00 3.69
346 390 2.124693 CGTGCTCCTCCTCCTCCTC 61.125 68.421 0.00 0.00 0.00 3.71
347 391 1.760480 GTGCTCCTCCTCCTCCTCC 60.760 68.421 0.00 0.00 0.00 4.30
348 392 1.938596 TGCTCCTCCTCCTCCTCCT 60.939 63.158 0.00 0.00 0.00 3.69
444 490 3.251004 ACAACAAAAGACGAGAAGATGGC 59.749 43.478 0.00 0.00 0.00 4.40
464 510 1.690845 CCTCCACTCTACAGCTCCCAT 60.691 57.143 0.00 0.00 0.00 4.00
481 527 1.765314 CCATGCTCCAAGGCTAGTAGT 59.235 52.381 0.00 0.00 0.00 2.73
482 528 2.965831 CCATGCTCCAAGGCTAGTAGTA 59.034 50.000 0.00 0.00 0.00 1.82
483 529 3.243907 CCATGCTCCAAGGCTAGTAGTAC 60.244 52.174 0.00 0.00 0.00 2.73
484 530 3.383698 TGCTCCAAGGCTAGTAGTACT 57.616 47.619 8.14 8.14 0.00 2.73
485 531 4.515028 TGCTCCAAGGCTAGTAGTACTA 57.485 45.455 9.66 9.66 0.00 1.82
486 532 4.205587 TGCTCCAAGGCTAGTAGTACTAC 58.794 47.826 23.03 23.03 36.35 2.73
591 643 4.337060 TGGTCACGGTCACGCTCG 62.337 66.667 0.00 0.00 46.04 5.03
662 714 0.957362 CGGAAGATACCTCGGTACCC 59.043 60.000 6.25 0.00 33.01 3.69
744 823 1.318886 TGCCTTGTTGGGTGTGTGTG 61.319 55.000 0.00 0.00 36.00 3.82
745 824 1.319614 GCCTTGTTGGGTGTGTGTGT 61.320 55.000 0.00 0.00 36.00 3.72
746 825 0.455410 CCTTGTTGGGTGTGTGTGTG 59.545 55.000 0.00 0.00 0.00 3.82
747 826 1.173043 CTTGTTGGGTGTGTGTGTGT 58.827 50.000 0.00 0.00 0.00 3.72
748 827 0.884514 TTGTTGGGTGTGTGTGTGTG 59.115 50.000 0.00 0.00 0.00 3.82
749 828 0.250945 TGTTGGGTGTGTGTGTGTGT 60.251 50.000 0.00 0.00 0.00 3.72
750 829 0.170116 GTTGGGTGTGTGTGTGTGTG 59.830 55.000 0.00 0.00 0.00 3.82
751 830 0.250945 TTGGGTGTGTGTGTGTGTGT 60.251 50.000 0.00 0.00 0.00 3.72
788 869 5.612725 ATCTCCCTCTCTTTGAGCTTTAG 57.387 43.478 0.00 0.00 41.35 1.85
805 886 4.674362 GCTTTAGTTTATGCCTTTGGACCG 60.674 45.833 0.00 0.00 0.00 4.79
825 906 1.227176 GATCTTACCCGTCACCCGC 60.227 63.158 0.00 0.00 34.38 6.13
995 1136 2.820787 ACTCACACACTAGCTAGGACAC 59.179 50.000 24.35 0.00 0.00 3.67
1237 1378 3.132139 CTTCTCCGCCTCCGACGA 61.132 66.667 0.00 0.00 36.29 4.20
1339 1480 1.559682 GACCAAATGAGGGCCAGACTA 59.440 52.381 6.18 0.00 0.00 2.59
1397 1539 6.220201 CCTCTCGTTTTCTTCTTCTTCTTCT 58.780 40.000 0.00 0.00 0.00 2.85
1411 1553 4.359706 TCTTCTTCTTTTGGCGCTTTTTC 58.640 39.130 7.64 0.00 0.00 2.29
1422 1564 1.613925 GCGCTTTTTCTTTCCCCTCTT 59.386 47.619 0.00 0.00 0.00 2.85
1427 1569 5.050490 GCTTTTTCTTTCCCCTCTTTTGAC 58.950 41.667 0.00 0.00 0.00 3.18
1450 1592 2.762535 TGAGTCGTTCCATTCCTTCC 57.237 50.000 0.00 0.00 0.00 3.46
1532 1674 4.680110 GCGCATGTGTACCTACTACTTATG 59.320 45.833 0.30 0.00 0.00 1.90
1539 1681 8.640063 TGTGTACCTACTACTTATGACTTGAA 57.360 34.615 0.00 0.00 0.00 2.69
1592 1734 6.851330 ACGTACGTAACTCAGTTTTACAGTAC 59.149 38.462 21.41 5.66 36.85 2.73
1593 1735 6.030385 CGTACGTAACTCAGTTTTACAGTACG 59.970 42.308 20.56 20.56 44.38 3.67
1818 2064 2.289382 TGACAATCAACAGCTTAGCCGA 60.289 45.455 0.00 0.00 0.00 5.54
1842 2088 1.621301 CTGAAGACGAGCACGCTTGG 61.621 60.000 15.15 0.80 43.96 3.61
1868 2114 4.230657 CGCTGCCTGCTACTAGTATTTAG 58.769 47.826 2.33 2.58 40.11 1.85
1869 2115 4.561105 GCTGCCTGCTACTAGTATTTAGG 58.439 47.826 16.92 16.92 38.95 2.69
1870 2116 4.561734 GCTGCCTGCTACTAGTATTTAGGG 60.562 50.000 20.21 12.71 38.95 3.53
1871 2117 3.323979 TGCCTGCTACTAGTATTTAGGGC 59.676 47.826 20.21 18.96 36.75 5.19
1872 2118 3.323979 GCCTGCTACTAGTATTTAGGGCA 59.676 47.826 20.21 15.98 36.31 5.36
1873 2119 4.020128 GCCTGCTACTAGTATTTAGGGCAT 60.020 45.833 20.21 0.00 36.31 4.40
1874 2120 5.482908 CCTGCTACTAGTATTTAGGGCATG 58.517 45.833 11.36 6.58 31.27 4.06
1875 2121 5.012148 CCTGCTACTAGTATTTAGGGCATGT 59.988 44.000 11.36 0.00 31.27 3.21
1876 2122 6.210784 CCTGCTACTAGTATTTAGGGCATGTA 59.789 42.308 11.36 0.00 31.27 2.29
1877 2123 6.989659 TGCTACTAGTATTTAGGGCATGTAC 58.010 40.000 2.33 0.00 0.00 2.90
1878 2124 6.551975 TGCTACTAGTATTTAGGGCATGTACA 59.448 38.462 2.33 0.00 0.00 2.90
1879 2125 7.070198 TGCTACTAGTATTTAGGGCATGTACAA 59.930 37.037 2.33 0.00 0.00 2.41
1880 2126 8.095169 GCTACTAGTATTTAGGGCATGTACAAT 58.905 37.037 2.33 0.00 0.00 2.71
1881 2127 9.424319 CTACTAGTATTTAGGGCATGTACAATG 57.576 37.037 2.33 0.12 0.00 2.82
1882 2128 8.029782 ACTAGTATTTAGGGCATGTACAATGA 57.970 34.615 0.00 0.00 0.00 2.57
1883 2129 8.660435 ACTAGTATTTAGGGCATGTACAATGAT 58.340 33.333 0.00 0.00 0.00 2.45
1884 2130 7.750229 AGTATTTAGGGCATGTACAATGATG 57.250 36.000 0.00 0.00 0.00 3.07
1885 2131 4.916983 TTTAGGGCATGTACAATGATGC 57.083 40.909 10.12 10.12 43.60 3.91
1886 2132 2.742428 AGGGCATGTACAATGATGCT 57.258 45.000 16.47 0.00 43.77 3.79
1887 2133 3.862877 AGGGCATGTACAATGATGCTA 57.137 42.857 16.47 0.00 43.77 3.49
1888 2134 4.377762 AGGGCATGTACAATGATGCTAT 57.622 40.909 16.47 5.35 43.77 2.97
1889 2135 4.330250 AGGGCATGTACAATGATGCTATC 58.670 43.478 16.47 8.57 43.77 2.08
1890 2136 4.042560 AGGGCATGTACAATGATGCTATCT 59.957 41.667 16.47 10.22 43.77 1.98
1891 2137 4.763793 GGGCATGTACAATGATGCTATCTT 59.236 41.667 16.47 0.00 43.77 2.40
1892 2138 5.939883 GGGCATGTACAATGATGCTATCTTA 59.060 40.000 16.47 0.00 43.77 2.10
1893 2139 6.093219 GGGCATGTACAATGATGCTATCTTAG 59.907 42.308 16.47 0.00 43.77 2.18
1894 2140 6.875726 GGCATGTACAATGATGCTATCTTAGA 59.124 38.462 16.47 0.00 43.77 2.10
1895 2141 7.388776 GGCATGTACAATGATGCTATCTTAGAA 59.611 37.037 16.47 0.00 43.77 2.10
1896 2142 8.441608 GCATGTACAATGATGCTATCTTAGAAG 58.558 37.037 11.12 0.00 41.52 2.85
1897 2143 9.486497 CATGTACAATGATGCTATCTTAGAAGT 57.514 33.333 0.00 0.00 0.00 3.01
1898 2144 8.877808 TGTACAATGATGCTATCTTAGAAGTG 57.122 34.615 0.00 0.00 0.00 3.16
1899 2145 8.478066 TGTACAATGATGCTATCTTAGAAGTGT 58.522 33.333 0.00 0.00 0.00 3.55
1900 2146 8.973378 GTACAATGATGCTATCTTAGAAGTGTC 58.027 37.037 0.00 0.00 0.00 3.67
1901 2147 7.559486 ACAATGATGCTATCTTAGAAGTGTCA 58.441 34.615 0.00 0.00 0.00 3.58
1902 2148 7.493971 ACAATGATGCTATCTTAGAAGTGTCAC 59.506 37.037 0.00 0.00 0.00 3.67
1903 2149 6.530019 TGATGCTATCTTAGAAGTGTCACA 57.470 37.500 5.62 0.00 0.00 3.58
1904 2150 7.117285 TGATGCTATCTTAGAAGTGTCACAT 57.883 36.000 5.62 0.00 0.00 3.21
1905 2151 8.237811 TGATGCTATCTTAGAAGTGTCACATA 57.762 34.615 5.62 0.00 0.00 2.29
1906 2152 8.355913 TGATGCTATCTTAGAAGTGTCACATAG 58.644 37.037 5.62 3.20 0.00 2.23
1907 2153 7.043961 TGCTATCTTAGAAGTGTCACATAGG 57.956 40.000 5.62 0.00 0.00 2.57
1908 2154 6.833933 TGCTATCTTAGAAGTGTCACATAGGA 59.166 38.462 5.62 0.53 0.00 2.94
1909 2155 7.507277 TGCTATCTTAGAAGTGTCACATAGGAT 59.493 37.037 5.62 8.70 0.00 3.24
1910 2156 9.015367 GCTATCTTAGAAGTGTCACATAGGATA 57.985 37.037 5.62 9.29 0.00 2.59
1914 2160 8.188799 TCTTAGAAGTGTCACATAGGATAAACG 58.811 37.037 5.62 0.00 0.00 3.60
1915 2161 6.525578 AGAAGTGTCACATAGGATAAACGA 57.474 37.500 5.62 0.00 0.00 3.85
1916 2162 7.113658 AGAAGTGTCACATAGGATAAACGAT 57.886 36.000 5.62 0.00 0.00 3.73
1917 2163 6.980978 AGAAGTGTCACATAGGATAAACGATG 59.019 38.462 5.62 0.00 0.00 3.84
1918 2164 6.465439 AGTGTCACATAGGATAAACGATGA 57.535 37.500 5.62 0.00 0.00 2.92
1919 2165 6.507900 AGTGTCACATAGGATAAACGATGAG 58.492 40.000 5.62 0.00 0.00 2.90
1920 2166 5.692204 GTGTCACATAGGATAAACGATGAGG 59.308 44.000 0.00 0.00 0.00 3.86
1921 2167 5.362717 TGTCACATAGGATAAACGATGAGGT 59.637 40.000 0.00 0.00 0.00 3.85
1922 2168 5.692204 GTCACATAGGATAAACGATGAGGTG 59.308 44.000 0.00 0.00 0.00 4.00
1923 2169 5.596772 TCACATAGGATAAACGATGAGGTGA 59.403 40.000 0.00 0.00 0.00 4.02
1924 2170 6.097696 TCACATAGGATAAACGATGAGGTGAA 59.902 38.462 0.00 0.00 0.00 3.18
1925 2171 6.422100 CACATAGGATAAACGATGAGGTGAAG 59.578 42.308 0.00 0.00 0.00 3.02
1926 2172 4.408182 AGGATAAACGATGAGGTGAAGG 57.592 45.455 0.00 0.00 0.00 3.46
1927 2173 4.030913 AGGATAAACGATGAGGTGAAGGA 58.969 43.478 0.00 0.00 0.00 3.36
1928 2174 4.100189 AGGATAAACGATGAGGTGAAGGAG 59.900 45.833 0.00 0.00 0.00 3.69
1929 2175 4.099573 GGATAAACGATGAGGTGAAGGAGA 59.900 45.833 0.00 0.00 0.00 3.71
1930 2176 3.601443 AAACGATGAGGTGAAGGAGAG 57.399 47.619 0.00 0.00 0.00 3.20
1931 2177 2.516227 ACGATGAGGTGAAGGAGAGA 57.484 50.000 0.00 0.00 0.00 3.10
1932 2178 2.374184 ACGATGAGGTGAAGGAGAGAG 58.626 52.381 0.00 0.00 0.00 3.20
1933 2179 2.025793 ACGATGAGGTGAAGGAGAGAGA 60.026 50.000 0.00 0.00 0.00 3.10
1934 2180 3.020274 CGATGAGGTGAAGGAGAGAGAA 58.980 50.000 0.00 0.00 0.00 2.87
1935 2181 3.066621 CGATGAGGTGAAGGAGAGAGAAG 59.933 52.174 0.00 0.00 0.00 2.85
1936 2182 3.534357 TGAGGTGAAGGAGAGAGAAGT 57.466 47.619 0.00 0.00 0.00 3.01
1937 2183 3.426615 TGAGGTGAAGGAGAGAGAAGTC 58.573 50.000 0.00 0.00 0.00 3.01
1938 2184 3.075283 TGAGGTGAAGGAGAGAGAAGTCT 59.925 47.826 0.00 0.00 34.86 3.24
1939 2185 4.086457 GAGGTGAAGGAGAGAGAAGTCTT 58.914 47.826 0.00 0.00 30.97 3.01
1940 2186 5.222151 TGAGGTGAAGGAGAGAGAAGTCTTA 60.222 44.000 0.00 0.00 30.97 2.10
1941 2187 5.646215 AGGTGAAGGAGAGAGAAGTCTTAA 58.354 41.667 0.00 0.00 30.97 1.85
1942 2188 6.078664 AGGTGAAGGAGAGAGAAGTCTTAAA 58.921 40.000 0.00 0.00 30.97 1.52
1943 2189 6.555360 AGGTGAAGGAGAGAGAAGTCTTAAAA 59.445 38.462 0.00 0.00 30.97 1.52
1944 2190 7.071321 AGGTGAAGGAGAGAGAAGTCTTAAAAA 59.929 37.037 0.00 0.00 30.97 1.94
2003 2249 8.700722 GAGGTGATCTCTTAGCATAATATGTG 57.299 38.462 1.92 0.00 39.38 3.21
2004 2250 8.200024 AGGTGATCTCTTAGCATAATATGTGT 57.800 34.615 1.92 0.00 0.00 3.72
2005 2251 8.310382 AGGTGATCTCTTAGCATAATATGTGTC 58.690 37.037 1.92 0.00 0.00 3.67
2006 2252 8.090831 GGTGATCTCTTAGCATAATATGTGTCA 58.909 37.037 1.92 0.00 0.00 3.58
2007 2253 8.920665 GTGATCTCTTAGCATAATATGTGTCAC 58.079 37.037 1.92 0.00 0.00 3.67
2008 2254 8.090831 TGATCTCTTAGCATAATATGTGTCACC 58.909 37.037 0.00 0.00 0.00 4.02
2009 2255 7.360113 TCTCTTAGCATAATATGTGTCACCA 57.640 36.000 0.00 0.00 0.00 4.17
2010 2256 7.966812 TCTCTTAGCATAATATGTGTCACCAT 58.033 34.615 0.00 0.00 0.00 3.55
2011 2257 7.874528 TCTCTTAGCATAATATGTGTCACCATG 59.125 37.037 0.00 0.00 0.00 3.66
2012 2258 7.508687 TCTTAGCATAATATGTGTCACCATGT 58.491 34.615 0.00 0.00 0.00 3.21
2013 2259 7.992608 TCTTAGCATAATATGTGTCACCATGTT 59.007 33.333 0.00 2.32 32.02 2.71
2014 2260 8.518430 TTAGCATAATATGTGTCACCATGTTT 57.482 30.769 0.00 0.00 30.20 2.83
2015 2261 7.408756 AGCATAATATGTGTCACCATGTTTT 57.591 32.000 0.00 0.00 30.20 2.43
2016 2262 7.839907 AGCATAATATGTGTCACCATGTTTTT 58.160 30.769 0.00 0.00 30.20 1.94
2017 2263 8.965819 AGCATAATATGTGTCACCATGTTTTTA 58.034 29.630 0.00 0.00 30.20 1.52
2018 2264 9.236691 GCATAATATGTGTCACCATGTTTTTAG 57.763 33.333 0.00 0.00 30.20 1.85
2019 2265 9.734620 CATAATATGTGTCACCATGTTTTTAGG 57.265 33.333 0.00 0.00 30.20 2.69
2020 2266 9.693739 ATAATATGTGTCACCATGTTTTTAGGA 57.306 29.630 0.00 0.00 30.20 2.94
2021 2267 8.415950 AATATGTGTCACCATGTTTTTAGGAA 57.584 30.769 0.00 0.00 0.00 3.36
2022 2268 6.916360 ATGTGTCACCATGTTTTTAGGAAT 57.084 33.333 0.00 0.00 0.00 3.01
2023 2269 6.083098 TGTGTCACCATGTTTTTAGGAATG 57.917 37.500 0.00 0.00 0.00 2.67
2024 2270 5.596361 TGTGTCACCATGTTTTTAGGAATGT 59.404 36.000 0.00 0.00 0.00 2.71
2025 2271 6.149633 GTGTCACCATGTTTTTAGGAATGTC 58.850 40.000 0.00 0.00 0.00 3.06
2026 2272 6.016276 GTGTCACCATGTTTTTAGGAATGTCT 60.016 38.462 0.00 0.00 0.00 3.41
2027 2273 7.174253 GTGTCACCATGTTTTTAGGAATGTCTA 59.826 37.037 0.00 0.00 0.00 2.59
2028 2274 7.390440 TGTCACCATGTTTTTAGGAATGTCTAG 59.610 37.037 0.00 0.00 0.00 2.43
2029 2275 7.390718 GTCACCATGTTTTTAGGAATGTCTAGT 59.609 37.037 0.00 0.00 0.00 2.57
2030 2276 7.942341 TCACCATGTTTTTAGGAATGTCTAGTT 59.058 33.333 0.00 0.00 0.00 2.24
2031 2277 9.226606 CACCATGTTTTTAGGAATGTCTAGTTA 57.773 33.333 0.00 0.00 0.00 2.24
2032 2278 9.975218 ACCATGTTTTTAGGAATGTCTAGTTAT 57.025 29.630 0.00 0.00 0.00 1.89
2044 2290 8.994170 GGAATGTCTAGTTATTGAAGATAAGGC 58.006 37.037 0.00 0.00 0.00 4.35
2045 2291 9.771534 GAATGTCTAGTTATTGAAGATAAGGCT 57.228 33.333 0.00 0.00 0.00 4.58
2053 2299 9.995003 AGTTATTGAAGATAAGGCTAAGAGATG 57.005 33.333 0.00 0.00 0.00 2.90
2054 2300 9.988815 GTTATTGAAGATAAGGCTAAGAGATGA 57.011 33.333 0.00 0.00 0.00 2.92
2055 2301 9.988815 TTATTGAAGATAAGGCTAAGAGATGAC 57.011 33.333 0.00 0.00 0.00 3.06
2056 2302 6.412362 TGAAGATAAGGCTAAGAGATGACC 57.588 41.667 0.00 0.00 0.00 4.02
2057 2303 5.305644 TGAAGATAAGGCTAAGAGATGACCC 59.694 44.000 0.00 0.00 0.00 4.46
2058 2304 4.820775 AGATAAGGCTAAGAGATGACCCA 58.179 43.478 0.00 0.00 0.00 4.51
2059 2305 5.410602 AGATAAGGCTAAGAGATGACCCAT 58.589 41.667 0.00 0.00 0.00 4.00
2060 2306 5.848921 AGATAAGGCTAAGAGATGACCCATT 59.151 40.000 0.00 0.00 0.00 3.16
2061 2307 3.853355 AGGCTAAGAGATGACCCATTG 57.147 47.619 0.00 0.00 0.00 2.82
2062 2308 3.118531 AGGCTAAGAGATGACCCATTGT 58.881 45.455 0.00 0.00 0.00 2.71
2063 2309 4.298626 AGGCTAAGAGATGACCCATTGTA 58.701 43.478 0.00 0.00 0.00 2.41
2064 2310 4.910304 AGGCTAAGAGATGACCCATTGTAT 59.090 41.667 0.00 0.00 0.00 2.29
2065 2311 6.084738 AGGCTAAGAGATGACCCATTGTATA 58.915 40.000 0.00 0.00 0.00 1.47
2066 2312 6.014156 AGGCTAAGAGATGACCCATTGTATAC 60.014 42.308 0.00 0.00 0.00 1.47
2067 2313 6.239600 GGCTAAGAGATGACCCATTGTATACA 60.240 42.308 0.08 0.08 0.00 2.29
2068 2314 7.390027 GCTAAGAGATGACCCATTGTATACAT 58.610 38.462 6.36 0.00 0.00 2.29
2069 2315 8.531982 GCTAAGAGATGACCCATTGTATACATA 58.468 37.037 6.36 0.00 0.00 2.29
2137 2383 8.299262 ACTATCTTATCAATCATTGTACACGC 57.701 34.615 0.00 0.00 0.00 5.34
2138 2384 5.984233 TCTTATCAATCATTGTACACGCC 57.016 39.130 0.00 0.00 0.00 5.68
2139 2385 4.814234 TCTTATCAATCATTGTACACGCCC 59.186 41.667 0.00 0.00 0.00 6.13
2140 2386 2.779755 TCAATCATTGTACACGCCCT 57.220 45.000 0.00 0.00 0.00 5.19
2141 2387 3.066291 TCAATCATTGTACACGCCCTT 57.934 42.857 0.00 0.00 0.00 3.95
2142 2388 4.209307 TCAATCATTGTACACGCCCTTA 57.791 40.909 0.00 0.00 0.00 2.69
2143 2389 3.936453 TCAATCATTGTACACGCCCTTAC 59.064 43.478 0.00 0.00 0.00 2.34
2144 2390 3.620427 ATCATTGTACACGCCCTTACA 57.380 42.857 0.00 0.00 0.00 2.41
2145 2391 2.967362 TCATTGTACACGCCCTTACAG 58.033 47.619 0.00 0.00 30.03 2.74
2146 2392 2.300723 TCATTGTACACGCCCTTACAGT 59.699 45.455 0.00 0.00 30.03 3.55
2147 2393 2.914695 TTGTACACGCCCTTACAGTT 57.085 45.000 0.00 0.00 30.03 3.16
2148 2394 4.021280 TCATTGTACACGCCCTTACAGTTA 60.021 41.667 0.00 0.00 30.03 2.24
2149 2395 3.581024 TGTACACGCCCTTACAGTTAG 57.419 47.619 0.00 0.00 0.00 2.34
2150 2396 2.892852 TGTACACGCCCTTACAGTTAGT 59.107 45.455 0.00 0.00 0.00 2.24
2151 2397 4.078537 TGTACACGCCCTTACAGTTAGTA 58.921 43.478 0.00 0.00 0.00 1.82
2152 2398 3.582714 ACACGCCCTTACAGTTAGTAC 57.417 47.619 0.00 0.00 30.91 2.73
2153 2399 2.232208 ACACGCCCTTACAGTTAGTACC 59.768 50.000 0.00 0.00 30.91 3.34
2154 2400 2.231964 CACGCCCTTACAGTTAGTACCA 59.768 50.000 0.00 0.00 30.91 3.25
2155 2401 2.232208 ACGCCCTTACAGTTAGTACCAC 59.768 50.000 0.00 0.00 30.91 4.16
2156 2402 2.231964 CGCCCTTACAGTTAGTACCACA 59.768 50.000 0.00 0.00 30.91 4.17
2157 2403 3.593096 GCCCTTACAGTTAGTACCACAC 58.407 50.000 0.00 0.00 30.91 3.82
2158 2404 3.618263 GCCCTTACAGTTAGTACCACACC 60.618 52.174 0.00 0.00 30.91 4.16
2159 2405 3.367703 CCCTTACAGTTAGTACCACACCG 60.368 52.174 0.00 0.00 30.91 4.94
2160 2406 3.248266 CTTACAGTTAGTACCACACCGC 58.752 50.000 0.00 0.00 30.91 5.68
2161 2407 1.335145 ACAGTTAGTACCACACCGCT 58.665 50.000 0.00 0.00 0.00 5.52
2162 2408 1.271656 ACAGTTAGTACCACACCGCTC 59.728 52.381 0.00 0.00 0.00 5.03
2163 2409 0.524862 AGTTAGTACCACACCGCTCG 59.475 55.000 0.00 0.00 0.00 5.03
2164 2410 0.242017 GTTAGTACCACACCGCTCGT 59.758 55.000 0.00 0.00 0.00 4.18
2165 2411 0.961019 TTAGTACCACACCGCTCGTT 59.039 50.000 0.00 0.00 0.00 3.85
2166 2412 0.523072 TAGTACCACACCGCTCGTTC 59.477 55.000 0.00 0.00 0.00 3.95
2167 2413 2.084681 GTACCACACCGCTCGTTCG 61.085 63.158 0.00 0.00 0.00 3.95
2174 2420 4.867599 CCGCTCGTTCGGGTAGCC 62.868 72.222 0.00 0.00 45.38 3.93
2175 2421 4.124351 CGCTCGTTCGGGTAGCCA 62.124 66.667 12.31 0.00 32.50 4.75
2176 2422 2.508663 GCTCGTTCGGGTAGCCAC 60.509 66.667 12.31 1.28 0.00 5.01
2177 2423 3.003113 GCTCGTTCGGGTAGCCACT 62.003 63.158 12.31 0.00 0.00 4.00
2178 2424 1.590147 CTCGTTCGGGTAGCCACTT 59.410 57.895 12.31 0.00 0.00 3.16
2179 2425 0.458025 CTCGTTCGGGTAGCCACTTC 60.458 60.000 12.31 0.00 0.00 3.01
2180 2426 1.804326 CGTTCGGGTAGCCACTTCG 60.804 63.158 12.31 6.14 0.00 3.79
2181 2427 2.098831 GTTCGGGTAGCCACTTCGC 61.099 63.158 12.31 0.00 0.00 4.70
2182 2428 2.280552 TTCGGGTAGCCACTTCGCT 61.281 57.895 12.31 0.00 43.09 4.93
2183 2429 1.823169 TTCGGGTAGCCACTTCGCTT 61.823 55.000 12.31 0.00 40.39 4.68
2184 2430 1.375523 CGGGTAGCCACTTCGCTTT 60.376 57.895 12.31 0.00 40.39 3.51
2185 2431 1.359459 CGGGTAGCCACTTCGCTTTC 61.359 60.000 12.31 0.00 40.39 2.62
2186 2432 0.321298 GGGTAGCCACTTCGCTTTCA 60.321 55.000 5.96 0.00 40.39 2.69
2187 2433 1.519408 GGTAGCCACTTCGCTTTCAA 58.481 50.000 0.00 0.00 40.39 2.69
2188 2434 1.197036 GGTAGCCACTTCGCTTTCAAC 59.803 52.381 0.00 0.00 40.39 3.18
2189 2435 1.871039 GTAGCCACTTCGCTTTCAACA 59.129 47.619 0.00 0.00 40.39 3.33
2190 2436 1.388547 AGCCACTTCGCTTTCAACAA 58.611 45.000 0.00 0.00 34.73 2.83
2191 2437 1.748493 AGCCACTTCGCTTTCAACAAA 59.252 42.857 0.00 0.00 34.73 2.83
2192 2438 1.852280 GCCACTTCGCTTTCAACAAAC 59.148 47.619 0.00 0.00 0.00 2.93
2193 2439 2.459934 CCACTTCGCTTTCAACAAACC 58.540 47.619 0.00 0.00 0.00 3.27
2194 2440 2.099098 CCACTTCGCTTTCAACAAACCT 59.901 45.455 0.00 0.00 0.00 3.50
2195 2441 3.363178 CACTTCGCTTTCAACAAACCTC 58.637 45.455 0.00 0.00 0.00 3.85
2196 2442 2.031683 ACTTCGCTTTCAACAAACCTCG 59.968 45.455 0.00 0.00 0.00 4.63
2197 2443 0.306533 TCGCTTTCAACAAACCTCGC 59.693 50.000 0.00 0.00 0.00 5.03
2198 2444 0.660300 CGCTTTCAACAAACCTCGCC 60.660 55.000 0.00 0.00 0.00 5.54
2199 2445 0.383949 GCTTTCAACAAACCTCGCCA 59.616 50.000 0.00 0.00 0.00 5.69
2200 2446 1.202359 GCTTTCAACAAACCTCGCCAA 60.202 47.619 0.00 0.00 0.00 4.52
2201 2447 2.737039 GCTTTCAACAAACCTCGCCAAA 60.737 45.455 0.00 0.00 0.00 3.28
2202 2448 3.716601 CTTTCAACAAACCTCGCCAAAT 58.283 40.909 0.00 0.00 0.00 2.32
2203 2449 3.810310 TTCAACAAACCTCGCCAAATT 57.190 38.095 0.00 0.00 0.00 1.82
2204 2450 3.810310 TCAACAAACCTCGCCAAATTT 57.190 38.095 0.00 0.00 0.00 1.82
2205 2451 4.920640 TCAACAAACCTCGCCAAATTTA 57.079 36.364 0.00 0.00 0.00 1.40
2206 2452 4.865776 TCAACAAACCTCGCCAAATTTAG 58.134 39.130 0.00 0.00 0.00 1.85
2207 2453 3.934457 ACAAACCTCGCCAAATTTAGG 57.066 42.857 3.58 3.58 35.14 2.69
2208 2454 2.560981 ACAAACCTCGCCAAATTTAGGG 59.439 45.455 9.11 2.40 33.16 3.53
2209 2455 2.823154 CAAACCTCGCCAAATTTAGGGA 59.177 45.455 9.11 6.46 33.16 4.20
2210 2456 2.420058 ACCTCGCCAAATTTAGGGAG 57.580 50.000 19.27 19.27 41.40 4.30
2212 2458 2.710096 CTCGCCAAATTTAGGGAGGA 57.290 50.000 18.70 5.93 38.89 3.71
2213 2459 2.999331 CTCGCCAAATTTAGGGAGGAA 58.001 47.619 18.70 0.00 38.89 3.36
2214 2460 2.683362 CTCGCCAAATTTAGGGAGGAAC 59.317 50.000 18.70 0.00 38.89 3.62
2215 2461 2.040545 TCGCCAAATTTAGGGAGGAACA 59.959 45.455 0.00 0.00 0.00 3.18
2216 2462 2.163613 CGCCAAATTTAGGGAGGAACAC 59.836 50.000 0.00 0.00 0.00 3.32
2217 2463 2.496070 GCCAAATTTAGGGAGGAACACC 59.504 50.000 0.00 0.00 38.77 4.16
2218 2464 3.817931 GCCAAATTTAGGGAGGAACACCT 60.818 47.826 0.00 0.00 39.68 4.00
2219 2465 4.017126 CCAAATTTAGGGAGGAACACCTC 58.983 47.826 7.64 7.64 46.71 3.85
2237 2483 3.477899 CTCCAACGAGGCAAATTCTTC 57.522 47.619 0.00 0.00 37.29 2.87
2238 2484 2.813754 CTCCAACGAGGCAAATTCTTCA 59.186 45.455 0.00 0.00 37.29 3.02
2239 2485 3.420893 TCCAACGAGGCAAATTCTTCAT 58.579 40.909 0.00 0.00 37.29 2.57
2240 2486 3.440173 TCCAACGAGGCAAATTCTTCATC 59.560 43.478 0.00 0.00 37.29 2.92
2241 2487 3.191162 CCAACGAGGCAAATTCTTCATCA 59.809 43.478 0.00 0.00 0.00 3.07
2242 2488 4.321156 CCAACGAGGCAAATTCTTCATCAA 60.321 41.667 0.00 0.00 0.00 2.57
2243 2489 4.425577 ACGAGGCAAATTCTTCATCAAC 57.574 40.909 0.00 0.00 0.00 3.18
2244 2490 3.820467 ACGAGGCAAATTCTTCATCAACA 59.180 39.130 0.00 0.00 0.00 3.33
2245 2491 4.278170 ACGAGGCAAATTCTTCATCAACAA 59.722 37.500 0.00 0.00 0.00 2.83
2246 2492 4.855388 CGAGGCAAATTCTTCATCAACAAG 59.145 41.667 0.00 0.00 0.00 3.16
2247 2493 5.563475 CGAGGCAAATTCTTCATCAACAAGT 60.563 40.000 0.00 0.00 0.00 3.16
2248 2494 5.776744 AGGCAAATTCTTCATCAACAAGTC 58.223 37.500 0.00 0.00 0.00 3.01
2249 2495 5.302568 AGGCAAATTCTTCATCAACAAGTCA 59.697 36.000 0.00 0.00 0.00 3.41
2250 2496 5.984926 GGCAAATTCTTCATCAACAAGTCAA 59.015 36.000 0.00 0.00 0.00 3.18
2251 2497 6.479660 GGCAAATTCTTCATCAACAAGTCAAA 59.520 34.615 0.00 0.00 0.00 2.69
2252 2498 7.339953 GCAAATTCTTCATCAACAAGTCAAAC 58.660 34.615 0.00 0.00 0.00 2.93
2253 2499 7.010367 GCAAATTCTTCATCAACAAGTCAAACA 59.990 33.333 0.00 0.00 0.00 2.83
2254 2500 7.992180 AATTCTTCATCAACAAGTCAAACAC 57.008 32.000 0.00 0.00 0.00 3.32
2255 2501 5.155509 TCTTCATCAACAAGTCAAACACG 57.844 39.130 0.00 0.00 0.00 4.49
2256 2502 4.873259 TCTTCATCAACAAGTCAAACACGA 59.127 37.500 0.00 0.00 0.00 4.35
2257 2503 5.352846 TCTTCATCAACAAGTCAAACACGAA 59.647 36.000 0.00 0.00 0.00 3.85
2258 2504 5.155509 TCATCAACAAGTCAAACACGAAG 57.844 39.130 0.00 0.00 0.00 3.79
2259 2505 4.873259 TCATCAACAAGTCAAACACGAAGA 59.127 37.500 0.00 0.00 0.00 2.87
2260 2506 5.527214 TCATCAACAAGTCAAACACGAAGAT 59.473 36.000 0.00 0.00 0.00 2.40
2261 2507 5.155509 TCAACAAGTCAAACACGAAGATG 57.844 39.130 0.00 0.00 0.00 2.90
2262 2508 4.634004 TCAACAAGTCAAACACGAAGATGT 59.366 37.500 0.00 0.00 0.00 3.06
2263 2509 5.123186 TCAACAAGTCAAACACGAAGATGTT 59.877 36.000 0.00 0.00 44.76 2.71
2264 2510 4.908736 ACAAGTCAAACACGAAGATGTTG 58.091 39.130 0.00 0.00 42.01 3.33
2265 2511 4.634004 ACAAGTCAAACACGAAGATGTTGA 59.366 37.500 0.00 0.00 42.01 3.18
2266 2512 5.296780 ACAAGTCAAACACGAAGATGTTGAT 59.703 36.000 0.00 0.00 42.01 2.57
2267 2513 6.481976 ACAAGTCAAACACGAAGATGTTGATA 59.518 34.615 0.00 0.00 42.01 2.15
2268 2514 7.173218 ACAAGTCAAACACGAAGATGTTGATAT 59.827 33.333 0.00 0.00 42.01 1.63
2269 2515 7.295952 AGTCAAACACGAAGATGTTGATATC 57.704 36.000 0.00 0.00 42.01 1.63
2270 2516 6.313905 AGTCAAACACGAAGATGTTGATATCC 59.686 38.462 0.00 0.00 42.01 2.59
2271 2517 5.584649 TCAAACACGAAGATGTTGATATCCC 59.415 40.000 0.00 0.00 42.01 3.85
2272 2518 4.753516 ACACGAAGATGTTGATATCCCA 57.246 40.909 0.00 0.00 0.00 4.37
2273 2519 4.442706 ACACGAAGATGTTGATATCCCAC 58.557 43.478 0.00 0.00 0.00 4.61
2274 2520 3.809832 CACGAAGATGTTGATATCCCACC 59.190 47.826 0.00 0.00 0.00 4.61
2275 2521 3.454447 ACGAAGATGTTGATATCCCACCA 59.546 43.478 0.00 0.00 0.00 4.17
2276 2522 4.103153 ACGAAGATGTTGATATCCCACCAT 59.897 41.667 0.00 0.00 0.00 3.55
2277 2523 4.453478 CGAAGATGTTGATATCCCACCATG 59.547 45.833 0.00 0.00 0.00 3.66
2278 2524 4.377762 AGATGTTGATATCCCACCATGG 57.622 45.455 11.19 11.19 37.25 3.66
2279 2525 3.723681 AGATGTTGATATCCCACCATGGT 59.276 43.478 13.00 13.00 35.17 3.55
2280 2526 4.168675 AGATGTTGATATCCCACCATGGTT 59.831 41.667 16.84 2.78 35.17 3.67
2281 2527 3.630168 TGTTGATATCCCACCATGGTTG 58.370 45.455 16.84 12.51 35.17 3.77
2282 2528 3.268072 TGTTGATATCCCACCATGGTTGA 59.732 43.478 16.84 15.49 35.17 3.18
2283 2529 4.264128 TGTTGATATCCCACCATGGTTGAA 60.264 41.667 16.84 0.00 35.17 2.69
2284 2530 4.169059 TGATATCCCACCATGGTTGAAG 57.831 45.455 16.84 3.43 35.17 3.02
2285 2531 3.785325 TGATATCCCACCATGGTTGAAGA 59.215 43.478 16.84 9.97 35.17 2.87
2286 2532 4.416513 TGATATCCCACCATGGTTGAAGAT 59.583 41.667 16.84 16.31 35.17 2.40
2287 2533 3.763557 ATCCCACCATGGTTGAAGATT 57.236 42.857 16.84 0.00 35.17 2.40
2288 2534 4.879295 ATCCCACCATGGTTGAAGATTA 57.121 40.909 16.84 0.00 35.17 1.75
2289 2535 4.235079 TCCCACCATGGTTGAAGATTAG 57.765 45.455 16.84 0.00 35.17 1.73
2290 2536 2.689983 CCCACCATGGTTGAAGATTAGC 59.310 50.000 16.84 0.00 35.17 3.09
2291 2537 2.355756 CCACCATGGTTGAAGATTAGCG 59.644 50.000 16.84 0.00 31.35 4.26
2292 2538 3.270027 CACCATGGTTGAAGATTAGCGA 58.730 45.455 16.84 0.00 0.00 4.93
2293 2539 3.310774 CACCATGGTTGAAGATTAGCGAG 59.689 47.826 16.84 0.00 0.00 5.03
2294 2540 3.055094 ACCATGGTTGAAGATTAGCGAGT 60.055 43.478 13.00 0.00 0.00 4.18
2295 2541 3.941483 CCATGGTTGAAGATTAGCGAGTT 59.059 43.478 2.57 0.00 0.00 3.01
2296 2542 4.201851 CCATGGTTGAAGATTAGCGAGTTG 60.202 45.833 2.57 0.00 0.00 3.16
2297 2543 3.334691 TGGTTGAAGATTAGCGAGTTGG 58.665 45.455 0.00 0.00 0.00 3.77
2298 2544 3.007506 TGGTTGAAGATTAGCGAGTTGGA 59.992 43.478 0.00 0.00 0.00 3.53
2299 2545 4.192317 GGTTGAAGATTAGCGAGTTGGAT 58.808 43.478 0.00 0.00 0.00 3.41
2300 2546 4.636206 GGTTGAAGATTAGCGAGTTGGATT 59.364 41.667 0.00 0.00 0.00 3.01
2301 2547 5.123979 GGTTGAAGATTAGCGAGTTGGATTT 59.876 40.000 0.00 0.00 0.00 2.17
2302 2548 6.349363 GGTTGAAGATTAGCGAGTTGGATTTT 60.349 38.462 0.00 0.00 0.00 1.82
2303 2549 6.817765 TGAAGATTAGCGAGTTGGATTTTT 57.182 33.333 0.00 0.00 0.00 1.94
2304 2550 6.611381 TGAAGATTAGCGAGTTGGATTTTTG 58.389 36.000 0.00 0.00 0.00 2.44
2305 2551 6.429692 TGAAGATTAGCGAGTTGGATTTTTGA 59.570 34.615 0.00 0.00 0.00 2.69
2306 2552 6.817765 AGATTAGCGAGTTGGATTTTTGAA 57.182 33.333 0.00 0.00 0.00 2.69
2307 2553 7.214467 AGATTAGCGAGTTGGATTTTTGAAA 57.786 32.000 0.00 0.00 0.00 2.69
2308 2554 7.830739 AGATTAGCGAGTTGGATTTTTGAAAT 58.169 30.769 0.00 0.00 0.00 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.541482 CATCCACCACGCATGCGC 62.541 66.667 38.15 0.00 44.19 6.09
1 2 1.717791 ATTCATCCACCACGCATGCG 61.718 55.000 36.79 36.79 46.03 4.73
83 84 2.497675 GCTTTCTCTTTCCCAAATCCCC 59.502 50.000 0.00 0.00 0.00 4.81
91 92 1.813178 CCCTTTCGCTTTCTCTTTCCC 59.187 52.381 0.00 0.00 0.00 3.97
112 113 1.331756 GCTGGTAGCGACATTCCATTG 59.668 52.381 0.00 0.00 0.00 2.82
146 147 1.135689 CCCGTTCAAAGATCCAAAGCG 60.136 52.381 0.00 0.00 0.00 4.68
272 312 2.732094 GCTTTGGCTTGCTGTGCG 60.732 61.111 0.00 0.00 35.22 5.34
305 345 1.535204 CCCCATGTGTGCCAGAAACC 61.535 60.000 0.00 0.00 0.00 3.27
340 384 0.979665 TCTGTGAAGCAAGGAGGAGG 59.020 55.000 0.00 0.00 0.00 4.30
341 385 1.898472 TCTCTGTGAAGCAAGGAGGAG 59.102 52.381 0.00 0.00 0.00 3.69
342 386 2.015456 TCTCTGTGAAGCAAGGAGGA 57.985 50.000 0.00 0.00 0.00 3.71
343 387 2.697654 CTTCTCTGTGAAGCAAGGAGG 58.302 52.381 6.55 0.00 44.62 4.30
391 435 1.892819 ATCGCAGATCATAGGGCCCG 61.893 60.000 18.44 1.51 45.12 6.13
392 436 0.107945 GATCGCAGATCATAGGGCCC 60.108 60.000 16.46 16.46 45.12 5.80
395 439 3.332919 CTTTGGATCGCAGATCATAGGG 58.667 50.000 16.61 0.00 45.12 3.53
444 490 0.324738 TGGGAGCTGTAGAGTGGAGG 60.325 60.000 0.00 0.00 0.00 4.30
464 510 3.383698 AGTACTACTAGCCTTGGAGCA 57.616 47.619 0.00 0.00 34.23 4.26
481 527 8.123639 ACAAAAATGCTCTCTACTGAGTAGTA 57.876 34.615 18.33 8.10 40.98 1.82
482 528 6.998802 ACAAAAATGCTCTCTACTGAGTAGT 58.001 36.000 18.33 0.00 40.98 2.73
483 529 7.897575 AACAAAAATGCTCTCTACTGAGTAG 57.102 36.000 13.35 13.35 40.98 2.57
484 530 8.677148 AAAACAAAAATGCTCTCTACTGAGTA 57.323 30.769 0.00 0.00 40.98 2.59
485 531 7.255277 GGAAAACAAAAATGCTCTCTACTGAGT 60.255 37.037 0.00 0.00 40.98 3.41
486 532 7.080724 GGAAAACAAAAATGCTCTCTACTGAG 58.919 38.462 0.00 0.00 41.51 3.35
487 533 6.545666 TGGAAAACAAAAATGCTCTCTACTGA 59.454 34.615 0.00 0.00 0.00 3.41
526 572 0.811281 GTTCAGGGCGCTGCTAAATT 59.189 50.000 25.01 0.00 0.00 1.82
591 643 3.316308 TCACAGAAAAGAGAAAGGCAAGC 59.684 43.478 0.00 0.00 0.00 4.01
662 714 0.393077 AATCTAGTGGGGGCGAATCG 59.607 55.000 0.00 0.00 0.00 3.34
744 823 4.217035 TGTGCACTGGACACACAC 57.783 55.556 19.41 0.00 42.88 3.82
748 827 1.927174 GATACGATGTGCACTGGACAC 59.073 52.381 19.41 0.06 38.55 3.67
749 828 1.824852 AGATACGATGTGCACTGGACA 59.175 47.619 19.41 5.77 0.00 4.02
750 829 2.464865 GAGATACGATGTGCACTGGAC 58.535 52.381 19.41 5.81 0.00 4.02
751 830 1.409064 GGAGATACGATGTGCACTGGA 59.591 52.381 19.41 4.98 0.00 3.86
788 869 2.706890 TCTCGGTCCAAAGGCATAAAC 58.293 47.619 0.00 0.00 0.00 2.01
805 886 0.384669 CGGGTGACGGGTAAGATCTC 59.615 60.000 0.00 0.00 39.42 2.75
825 906 0.798776 GGTCACATCTGAAACAGCGG 59.201 55.000 0.00 0.00 0.00 5.52
855 936 8.198109 TCTTTGTTGTTGTAGATATAGGAGAGC 58.802 37.037 0.00 0.00 0.00 4.09
962 1064 1.299541 GTGTGAGTTGTGACACCCAG 58.700 55.000 2.45 0.00 37.15 4.45
995 1136 0.108207 GCTGGGGACTCTCATCATGG 59.892 60.000 0.00 0.00 0.00 3.66
1095 1236 1.446272 CGTTGAGGCGAGAAGGACC 60.446 63.158 0.00 0.00 0.00 4.46
1175 1316 3.723235 GAGGCATCGAAGCTGGCGA 62.723 63.158 12.92 13.40 43.43 5.54
1237 1378 4.789075 CCGGTCCGCGTCGAACAT 62.789 66.667 5.50 0.00 0.00 2.71
1329 1470 2.911928 GCCCTTCTAGTCTGGCCC 59.088 66.667 0.00 0.00 37.94 5.80
1339 1480 1.846712 GAGAGTTGGCTGGCCCTTCT 61.847 60.000 9.28 8.87 34.56 2.85
1397 1539 2.556257 GGGAAAGAAAAAGCGCCAAAA 58.444 42.857 2.29 0.00 0.00 2.44
1411 1553 3.630312 TCAAACGTCAAAAGAGGGGAAAG 59.370 43.478 0.00 0.00 0.00 2.62
1422 1564 2.619147 TGGAACGACTCAAACGTCAAA 58.381 42.857 0.00 0.00 43.16 2.69
1427 1569 2.413837 AGGAATGGAACGACTCAAACG 58.586 47.619 0.00 0.00 0.00 3.60
1450 1592 1.360911 CAAAACCGGTTGAACCCCG 59.639 57.895 23.08 1.46 45.07 5.73
1532 1674 5.064452 ACAATGCTCGATTCAGATTCAAGTC 59.936 40.000 0.00 0.00 0.00 3.01
1539 1681 3.834489 AGGACAATGCTCGATTCAGAT 57.166 42.857 0.00 0.00 0.00 2.90
1574 1716 9.801873 AAAAGTACGTACTGTAAAACTGAGTTA 57.198 29.630 28.00 0.00 36.50 2.24
1592 1734 7.739043 GGAACTGAACGAATCTTAAAAAGTACG 59.261 37.037 0.00 0.00 0.00 3.67
1593 1735 8.013947 GGGAACTGAACGAATCTTAAAAAGTAC 58.986 37.037 0.00 0.00 0.00 2.73
1759 2004 1.276622 AGAACTACGGATGCAACCCT 58.723 50.000 7.52 0.00 0.00 4.34
1818 2064 1.078848 GTGCTCGTCTTCAGCCCAT 60.079 57.895 0.00 0.00 35.89 4.00
1824 2070 1.664649 CCAAGCGTGCTCGTCTTCA 60.665 57.895 10.18 0.00 39.49 3.02
1852 2098 6.102897 ACATGCCCTAAATACTAGTAGCAG 57.897 41.667 15.00 8.93 31.70 4.24
1868 2114 4.330250 AGATAGCATCATTGTACATGCCC 58.670 43.478 14.08 5.86 45.63 5.36
1869 2115 5.954296 AAGATAGCATCATTGTACATGCC 57.046 39.130 14.08 1.71 45.63 4.40
1870 2116 7.895975 TCTAAGATAGCATCATTGTACATGC 57.104 36.000 10.53 10.53 44.96 4.06
1871 2117 9.486497 ACTTCTAAGATAGCATCATTGTACATG 57.514 33.333 0.00 0.00 0.00 3.21
1872 2118 9.486497 CACTTCTAAGATAGCATCATTGTACAT 57.514 33.333 0.00 0.00 0.00 2.29
1873 2119 8.478066 ACACTTCTAAGATAGCATCATTGTACA 58.522 33.333 0.00 0.00 0.00 2.90
1874 2120 8.879342 ACACTTCTAAGATAGCATCATTGTAC 57.121 34.615 0.00 0.00 0.00 2.90
1875 2121 8.695456 TGACACTTCTAAGATAGCATCATTGTA 58.305 33.333 0.00 0.00 0.00 2.41
1876 2122 7.493971 GTGACACTTCTAAGATAGCATCATTGT 59.506 37.037 0.00 0.00 0.00 2.71
1877 2123 7.493645 TGTGACACTTCTAAGATAGCATCATTG 59.506 37.037 7.20 0.00 0.00 2.82
1878 2124 7.559486 TGTGACACTTCTAAGATAGCATCATT 58.441 34.615 7.20 0.00 0.00 2.57
1879 2125 7.117285 TGTGACACTTCTAAGATAGCATCAT 57.883 36.000 7.20 0.00 0.00 2.45
1880 2126 6.530019 TGTGACACTTCTAAGATAGCATCA 57.470 37.500 7.20 0.00 0.00 3.07
1881 2127 7.812191 CCTATGTGACACTTCTAAGATAGCATC 59.188 40.741 7.20 0.00 0.00 3.91
1882 2128 7.507277 TCCTATGTGACACTTCTAAGATAGCAT 59.493 37.037 7.20 0.00 0.00 3.79
1883 2129 6.833933 TCCTATGTGACACTTCTAAGATAGCA 59.166 38.462 7.20 0.00 0.00 3.49
1884 2130 7.278461 TCCTATGTGACACTTCTAAGATAGC 57.722 40.000 7.20 0.00 0.00 2.97
1888 2134 8.188799 CGTTTATCCTATGTGACACTTCTAAGA 58.811 37.037 7.20 0.00 0.00 2.10
1889 2135 8.188799 TCGTTTATCCTATGTGACACTTCTAAG 58.811 37.037 7.20 0.00 0.00 2.18
1890 2136 8.058667 TCGTTTATCCTATGTGACACTTCTAA 57.941 34.615 7.20 0.00 0.00 2.10
1891 2137 7.634671 TCGTTTATCCTATGTGACACTTCTA 57.365 36.000 7.20 0.00 0.00 2.10
1892 2138 6.525578 TCGTTTATCCTATGTGACACTTCT 57.474 37.500 7.20 0.00 0.00 2.85
1893 2139 6.978659 TCATCGTTTATCCTATGTGACACTTC 59.021 38.462 7.20 0.00 0.00 3.01
1894 2140 6.873997 TCATCGTTTATCCTATGTGACACTT 58.126 36.000 7.20 3.00 0.00 3.16
1895 2141 6.461648 CCTCATCGTTTATCCTATGTGACACT 60.462 42.308 7.20 0.00 0.00 3.55
1896 2142 5.692204 CCTCATCGTTTATCCTATGTGACAC 59.308 44.000 0.00 0.00 0.00 3.67
1897 2143 5.362717 ACCTCATCGTTTATCCTATGTGACA 59.637 40.000 0.00 0.00 0.00 3.58
1898 2144 5.692204 CACCTCATCGTTTATCCTATGTGAC 59.308 44.000 0.00 0.00 0.00 3.67
1899 2145 5.596772 TCACCTCATCGTTTATCCTATGTGA 59.403 40.000 0.00 0.00 0.00 3.58
1900 2146 5.842907 TCACCTCATCGTTTATCCTATGTG 58.157 41.667 0.00 0.00 0.00 3.21
1901 2147 6.463049 CCTTCACCTCATCGTTTATCCTATGT 60.463 42.308 0.00 0.00 0.00 2.29
1902 2148 5.928839 CCTTCACCTCATCGTTTATCCTATG 59.071 44.000 0.00 0.00 0.00 2.23
1903 2149 5.839063 TCCTTCACCTCATCGTTTATCCTAT 59.161 40.000 0.00 0.00 0.00 2.57
1904 2150 5.205821 TCCTTCACCTCATCGTTTATCCTA 58.794 41.667 0.00 0.00 0.00 2.94
1905 2151 4.030913 TCCTTCACCTCATCGTTTATCCT 58.969 43.478 0.00 0.00 0.00 3.24
1906 2152 4.099573 TCTCCTTCACCTCATCGTTTATCC 59.900 45.833 0.00 0.00 0.00 2.59
1907 2153 5.067936 TCTCTCCTTCACCTCATCGTTTATC 59.932 44.000 0.00 0.00 0.00 1.75
1908 2154 4.956700 TCTCTCCTTCACCTCATCGTTTAT 59.043 41.667 0.00 0.00 0.00 1.40
1909 2155 4.341487 TCTCTCCTTCACCTCATCGTTTA 58.659 43.478 0.00 0.00 0.00 2.01
1910 2156 3.165875 TCTCTCCTTCACCTCATCGTTT 58.834 45.455 0.00 0.00 0.00 3.60
1911 2157 2.757868 CTCTCTCCTTCACCTCATCGTT 59.242 50.000 0.00 0.00 0.00 3.85
1912 2158 2.025793 TCTCTCTCCTTCACCTCATCGT 60.026 50.000 0.00 0.00 0.00 3.73
1913 2159 2.649190 TCTCTCTCCTTCACCTCATCG 58.351 52.381 0.00 0.00 0.00 3.84
1914 2160 4.023291 ACTTCTCTCTCCTTCACCTCATC 58.977 47.826 0.00 0.00 0.00 2.92
1915 2161 4.023291 GACTTCTCTCTCCTTCACCTCAT 58.977 47.826 0.00 0.00 0.00 2.90
1916 2162 3.075283 AGACTTCTCTCTCCTTCACCTCA 59.925 47.826 0.00 0.00 0.00 3.86
1917 2163 3.697166 AGACTTCTCTCTCCTTCACCTC 58.303 50.000 0.00 0.00 0.00 3.85
1918 2164 3.825908 AGACTTCTCTCTCCTTCACCT 57.174 47.619 0.00 0.00 0.00 4.00
1919 2165 5.986501 TTAAGACTTCTCTCTCCTTCACC 57.013 43.478 0.00 0.00 0.00 4.02
1978 2224 8.310382 ACACATATTATGCTAAGAGATCACCTC 58.690 37.037 3.52 0.00 42.28 3.85
1979 2225 8.200024 ACACATATTATGCTAAGAGATCACCT 57.800 34.615 3.52 0.00 0.00 4.00
1980 2226 8.090831 TGACACATATTATGCTAAGAGATCACC 58.909 37.037 3.52 0.00 0.00 4.02
1981 2227 8.920665 GTGACACATATTATGCTAAGAGATCAC 58.079 37.037 0.00 0.00 0.00 3.06
1982 2228 8.090831 GGTGACACATATTATGCTAAGAGATCA 58.909 37.037 8.08 0.00 0.00 2.92
1983 2229 8.090831 TGGTGACACATATTATGCTAAGAGATC 58.909 37.037 8.08 0.00 33.40 2.75
1984 2230 7.966812 TGGTGACACATATTATGCTAAGAGAT 58.033 34.615 8.08 0.00 33.40 2.75
1985 2231 7.360113 TGGTGACACATATTATGCTAAGAGA 57.640 36.000 8.08 0.00 33.40 3.10
2003 2249 6.575162 AGACATTCCTAAAAACATGGTGAC 57.425 37.500 0.00 0.00 0.00 3.67
2004 2250 7.458397 ACTAGACATTCCTAAAAACATGGTGA 58.542 34.615 0.00 0.00 0.00 4.02
2005 2251 7.687941 ACTAGACATTCCTAAAAACATGGTG 57.312 36.000 0.00 0.00 0.00 4.17
2006 2252 9.975218 ATAACTAGACATTCCTAAAAACATGGT 57.025 29.630 0.00 0.00 0.00 3.55
2018 2264 8.994170 GCCTTATCTTCAATAACTAGACATTCC 58.006 37.037 0.00 0.00 0.00 3.01
2019 2265 9.771534 AGCCTTATCTTCAATAACTAGACATTC 57.228 33.333 0.00 0.00 0.00 2.67
2027 2273 9.995003 CATCTCTTAGCCTTATCTTCAATAACT 57.005 33.333 0.00 0.00 0.00 2.24
2028 2274 9.988815 TCATCTCTTAGCCTTATCTTCAATAAC 57.011 33.333 0.00 0.00 0.00 1.89
2029 2275 9.988815 GTCATCTCTTAGCCTTATCTTCAATAA 57.011 33.333 0.00 0.00 0.00 1.40
2030 2276 8.589338 GGTCATCTCTTAGCCTTATCTTCAATA 58.411 37.037 0.00 0.00 0.00 1.90
2031 2277 7.449247 GGTCATCTCTTAGCCTTATCTTCAAT 58.551 38.462 0.00 0.00 0.00 2.57
2032 2278 6.183361 GGGTCATCTCTTAGCCTTATCTTCAA 60.183 42.308 0.00 0.00 0.00 2.69
2033 2279 5.305644 GGGTCATCTCTTAGCCTTATCTTCA 59.694 44.000 0.00 0.00 0.00 3.02
2034 2280 5.305644 TGGGTCATCTCTTAGCCTTATCTTC 59.694 44.000 0.00 0.00 34.30 2.87
2035 2281 5.219739 TGGGTCATCTCTTAGCCTTATCTT 58.780 41.667 0.00 0.00 34.30 2.40
2036 2282 4.820775 TGGGTCATCTCTTAGCCTTATCT 58.179 43.478 0.00 0.00 34.30 1.98
2037 2283 5.753721 ATGGGTCATCTCTTAGCCTTATC 57.246 43.478 0.00 0.00 34.30 1.75
2038 2284 5.370880 ACAATGGGTCATCTCTTAGCCTTAT 59.629 40.000 0.00 0.00 34.30 1.73
2039 2285 4.721776 ACAATGGGTCATCTCTTAGCCTTA 59.278 41.667 0.00 0.00 34.30 2.69
2040 2286 3.525199 ACAATGGGTCATCTCTTAGCCTT 59.475 43.478 0.00 0.00 34.30 4.35
2041 2287 3.118531 ACAATGGGTCATCTCTTAGCCT 58.881 45.455 0.00 0.00 34.30 4.58
2042 2288 3.567478 ACAATGGGTCATCTCTTAGCC 57.433 47.619 0.00 0.00 0.00 3.93
2043 2289 6.759272 TGTATACAATGGGTCATCTCTTAGC 58.241 40.000 2.20 0.00 0.00 3.09
2111 2357 8.765219 GCGTGTACAATGATTGATAAGATAGTT 58.235 33.333 12.80 0.00 0.00 2.24
2112 2358 7.385205 GGCGTGTACAATGATTGATAAGATAGT 59.615 37.037 12.80 0.00 0.00 2.12
2113 2359 7.148573 GGGCGTGTACAATGATTGATAAGATAG 60.149 40.741 12.80 0.00 0.00 2.08
2114 2360 6.649141 GGGCGTGTACAATGATTGATAAGATA 59.351 38.462 12.80 0.00 0.00 1.98
2115 2361 5.470098 GGGCGTGTACAATGATTGATAAGAT 59.530 40.000 12.80 0.00 0.00 2.40
2116 2362 4.814234 GGGCGTGTACAATGATTGATAAGA 59.186 41.667 12.80 0.00 0.00 2.10
2117 2363 4.816385 AGGGCGTGTACAATGATTGATAAG 59.184 41.667 12.80 1.60 0.00 1.73
2118 2364 4.776349 AGGGCGTGTACAATGATTGATAA 58.224 39.130 12.80 0.00 0.00 1.75
2119 2365 4.415881 AGGGCGTGTACAATGATTGATA 57.584 40.909 12.80 0.00 0.00 2.15
2120 2366 3.281727 AGGGCGTGTACAATGATTGAT 57.718 42.857 12.80 0.00 0.00 2.57
2121 2367 2.779755 AGGGCGTGTACAATGATTGA 57.220 45.000 12.80 0.00 0.00 2.57
2122 2368 3.687212 TGTAAGGGCGTGTACAATGATTG 59.313 43.478 3.16 3.16 0.00 2.67
2123 2369 3.938963 CTGTAAGGGCGTGTACAATGATT 59.061 43.478 0.00 0.00 30.11 2.57
2124 2370 3.055385 ACTGTAAGGGCGTGTACAATGAT 60.055 43.478 0.00 0.00 39.30 2.45
2125 2371 2.300723 ACTGTAAGGGCGTGTACAATGA 59.699 45.455 0.00 0.00 39.30 2.57
2126 2372 2.695359 ACTGTAAGGGCGTGTACAATG 58.305 47.619 0.00 0.00 39.30 2.82
2127 2373 3.412237 AACTGTAAGGGCGTGTACAAT 57.588 42.857 0.00 0.00 39.30 2.71
2128 2374 2.914695 AACTGTAAGGGCGTGTACAA 57.085 45.000 0.00 0.00 39.30 2.41
2129 2375 2.892852 ACTAACTGTAAGGGCGTGTACA 59.107 45.455 0.00 0.00 39.30 2.90
2130 2376 3.582714 ACTAACTGTAAGGGCGTGTAC 57.417 47.619 0.00 0.00 39.30 2.90
2131 2377 3.443681 GGTACTAACTGTAAGGGCGTGTA 59.556 47.826 0.00 0.00 39.30 2.90
2132 2378 2.232208 GGTACTAACTGTAAGGGCGTGT 59.768 50.000 0.00 0.00 39.30 4.49
2133 2379 2.231964 TGGTACTAACTGTAAGGGCGTG 59.768 50.000 0.00 0.00 39.30 5.34
2134 2380 2.232208 GTGGTACTAACTGTAAGGGCGT 59.768 50.000 0.00 0.00 39.30 5.68
2135 2381 2.231964 TGTGGTACTAACTGTAAGGGCG 59.768 50.000 0.00 0.00 39.30 6.13
2136 2382 3.593096 GTGTGGTACTAACTGTAAGGGC 58.407 50.000 0.00 0.00 39.30 5.19
2137 2383 3.367703 CGGTGTGGTACTAACTGTAAGGG 60.368 52.174 0.00 0.00 39.30 3.95
2138 2384 3.841643 CGGTGTGGTACTAACTGTAAGG 58.158 50.000 0.00 0.00 39.30 2.69
2139 2385 3.057033 AGCGGTGTGGTACTAACTGTAAG 60.057 47.826 0.00 0.00 42.29 2.34
2140 2386 2.892852 AGCGGTGTGGTACTAACTGTAA 59.107 45.455 0.00 0.00 32.25 2.41
2141 2387 2.489329 GAGCGGTGTGGTACTAACTGTA 59.511 50.000 0.00 0.00 0.00 2.74
2142 2388 1.271656 GAGCGGTGTGGTACTAACTGT 59.728 52.381 0.00 0.00 0.00 3.55
2143 2389 1.731424 CGAGCGGTGTGGTACTAACTG 60.731 57.143 0.00 0.00 0.00 3.16
2144 2390 0.524862 CGAGCGGTGTGGTACTAACT 59.475 55.000 0.00 0.00 0.00 2.24
2145 2391 0.242017 ACGAGCGGTGTGGTACTAAC 59.758 55.000 0.00 0.00 0.00 2.34
2146 2392 0.961019 AACGAGCGGTGTGGTACTAA 59.039 50.000 0.00 0.00 0.00 2.24
2147 2393 0.523072 GAACGAGCGGTGTGGTACTA 59.477 55.000 0.00 0.00 0.00 1.82
2148 2394 1.288127 GAACGAGCGGTGTGGTACT 59.712 57.895 0.00 0.00 0.00 2.73
2149 2395 2.084681 CGAACGAGCGGTGTGGTAC 61.085 63.158 0.00 0.00 0.00 3.34
2150 2396 2.256158 CGAACGAGCGGTGTGGTA 59.744 61.111 0.00 0.00 0.00 3.25
2151 2397 4.657824 CCGAACGAGCGGTGTGGT 62.658 66.667 11.54 0.00 46.07 4.16
2158 2404 4.124351 TGGCTACCCGAACGAGCG 62.124 66.667 0.00 0.00 37.07 5.03
2159 2405 2.502692 AAGTGGCTACCCGAACGAGC 62.503 60.000 0.00 0.00 35.39 5.03
2160 2406 0.458025 GAAGTGGCTACCCGAACGAG 60.458 60.000 0.00 0.00 0.00 4.18
2161 2407 1.588082 GAAGTGGCTACCCGAACGA 59.412 57.895 0.00 0.00 0.00 3.85
2162 2408 1.804326 CGAAGTGGCTACCCGAACG 60.804 63.158 6.75 0.00 0.00 3.95
2163 2409 2.098831 GCGAAGTGGCTACCCGAAC 61.099 63.158 14.93 0.00 0.00 3.95
2164 2410 1.823169 AAGCGAAGTGGCTACCCGAA 61.823 55.000 14.93 0.00 43.93 4.30
2165 2411 1.823169 AAAGCGAAGTGGCTACCCGA 61.823 55.000 14.93 0.00 43.93 5.14
2166 2412 1.359459 GAAAGCGAAGTGGCTACCCG 61.359 60.000 7.98 7.98 43.93 5.28
2167 2413 0.321298 TGAAAGCGAAGTGGCTACCC 60.321 55.000 0.00 0.00 43.93 3.69
2168 2414 1.197036 GTTGAAAGCGAAGTGGCTACC 59.803 52.381 0.00 0.00 43.93 3.18
2169 2415 1.871039 TGTTGAAAGCGAAGTGGCTAC 59.129 47.619 0.00 0.00 43.93 3.58
2170 2416 2.248280 TGTTGAAAGCGAAGTGGCTA 57.752 45.000 0.00 0.00 43.93 3.93
2172 2418 1.852280 GTTTGTTGAAAGCGAAGTGGC 59.148 47.619 0.00 0.00 0.00 5.01
2173 2419 2.099098 AGGTTTGTTGAAAGCGAAGTGG 59.901 45.455 0.00 0.00 43.13 4.00
2174 2420 3.363178 GAGGTTTGTTGAAAGCGAAGTG 58.637 45.455 0.00 0.00 43.13 3.16
2175 2421 2.031683 CGAGGTTTGTTGAAAGCGAAGT 59.968 45.455 0.00 0.00 43.13 3.01
2176 2422 2.639751 CGAGGTTTGTTGAAAGCGAAG 58.360 47.619 0.00 0.00 43.13 3.79
2177 2423 1.268335 GCGAGGTTTGTTGAAAGCGAA 60.268 47.619 0.00 0.00 43.13 4.70
2178 2424 0.306533 GCGAGGTTTGTTGAAAGCGA 59.693 50.000 0.00 0.00 43.13 4.93
2179 2425 0.660300 GGCGAGGTTTGTTGAAAGCG 60.660 55.000 0.00 0.00 43.13 4.68
2180 2426 0.383949 TGGCGAGGTTTGTTGAAAGC 59.616 50.000 0.00 0.00 39.44 3.51
2181 2427 2.861462 TTGGCGAGGTTTGTTGAAAG 57.139 45.000 0.00 0.00 0.00 2.62
2182 2428 3.810310 ATTTGGCGAGGTTTGTTGAAA 57.190 38.095 0.00 0.00 0.00 2.69
2183 2429 3.810310 AATTTGGCGAGGTTTGTTGAA 57.190 38.095 0.00 0.00 0.00 2.69
2184 2430 3.810310 AAATTTGGCGAGGTTTGTTGA 57.190 38.095 0.00 0.00 0.00 3.18
2185 2431 3.987220 CCTAAATTTGGCGAGGTTTGTTG 59.013 43.478 0.00 0.00 0.00 3.33
2186 2432 3.006430 CCCTAAATTTGGCGAGGTTTGTT 59.994 43.478 0.00 0.00 0.00 2.83
2187 2433 2.560981 CCCTAAATTTGGCGAGGTTTGT 59.439 45.455 0.00 0.00 0.00 2.83
2188 2434 2.823154 TCCCTAAATTTGGCGAGGTTTG 59.177 45.455 0.00 0.00 0.00 2.93
2189 2435 3.089284 CTCCCTAAATTTGGCGAGGTTT 58.911 45.455 8.03 0.00 0.00 3.27
2190 2436 2.620627 CCTCCCTAAATTTGGCGAGGTT 60.621 50.000 21.28 0.00 37.32 3.50
2191 2437 1.064685 CCTCCCTAAATTTGGCGAGGT 60.065 52.381 21.28 0.00 37.32 3.85
2192 2438 1.211949 TCCTCCCTAAATTTGGCGAGG 59.788 52.381 22.81 22.81 40.38 4.63
2193 2439 2.683362 GTTCCTCCCTAAATTTGGCGAG 59.317 50.000 8.77 8.77 0.00 5.03
2194 2440 2.040545 TGTTCCTCCCTAAATTTGGCGA 59.959 45.455 0.00 0.00 0.00 5.54
2195 2441 2.163613 GTGTTCCTCCCTAAATTTGGCG 59.836 50.000 0.00 0.00 0.00 5.69
2196 2442 2.496070 GGTGTTCCTCCCTAAATTTGGC 59.504 50.000 0.00 0.00 0.00 4.52
2197 2443 4.047627 AGGTGTTCCTCCCTAAATTTGG 57.952 45.455 0.00 0.00 40.58 3.28
2217 2463 2.813754 TGAAGAATTTGCCTCGTTGGAG 59.186 45.455 1.63 0.00 40.14 3.86
2218 2464 2.857483 TGAAGAATTTGCCTCGTTGGA 58.143 42.857 1.63 0.00 38.35 3.53
2219 2465 3.191162 TGATGAAGAATTTGCCTCGTTGG 59.809 43.478 0.00 0.00 39.35 3.77
2220 2466 4.424061 TGATGAAGAATTTGCCTCGTTG 57.576 40.909 0.00 0.00 0.00 4.10
2221 2467 4.278170 TGTTGATGAAGAATTTGCCTCGTT 59.722 37.500 0.00 0.00 0.00 3.85
2222 2468 3.820467 TGTTGATGAAGAATTTGCCTCGT 59.180 39.130 0.00 0.00 0.00 4.18
2223 2469 4.424061 TGTTGATGAAGAATTTGCCTCG 57.576 40.909 0.00 0.00 0.00 4.63
2224 2470 5.776744 ACTTGTTGATGAAGAATTTGCCTC 58.223 37.500 0.00 0.00 0.00 4.70
2225 2471 5.302568 TGACTTGTTGATGAAGAATTTGCCT 59.697 36.000 0.00 0.00 0.00 4.75
2226 2472 5.531634 TGACTTGTTGATGAAGAATTTGCC 58.468 37.500 0.00 0.00 0.00 4.52
2227 2473 7.010367 TGTTTGACTTGTTGATGAAGAATTTGC 59.990 33.333 0.00 0.00 0.00 3.68
2228 2474 8.323140 GTGTTTGACTTGTTGATGAAGAATTTG 58.677 33.333 0.00 0.00 0.00 2.32
2229 2475 7.220683 CGTGTTTGACTTGTTGATGAAGAATTT 59.779 33.333 0.00 0.00 0.00 1.82
2230 2476 6.692681 CGTGTTTGACTTGTTGATGAAGAATT 59.307 34.615 0.00 0.00 0.00 2.17
2231 2477 6.038161 TCGTGTTTGACTTGTTGATGAAGAAT 59.962 34.615 0.00 0.00 0.00 2.40
2232 2478 5.352846 TCGTGTTTGACTTGTTGATGAAGAA 59.647 36.000 0.00 0.00 0.00 2.52
2233 2479 4.873259 TCGTGTTTGACTTGTTGATGAAGA 59.127 37.500 0.00 0.00 0.00 2.87
2234 2480 5.155509 TCGTGTTTGACTTGTTGATGAAG 57.844 39.130 0.00 0.00 0.00 3.02
2235 2481 5.352846 TCTTCGTGTTTGACTTGTTGATGAA 59.647 36.000 0.00 0.00 0.00 2.57
2236 2482 4.873259 TCTTCGTGTTTGACTTGTTGATGA 59.127 37.500 0.00 0.00 0.00 2.92
2237 2483 5.155509 TCTTCGTGTTTGACTTGTTGATG 57.844 39.130 0.00 0.00 0.00 3.07
2238 2484 5.296780 ACATCTTCGTGTTTGACTTGTTGAT 59.703 36.000 0.00 0.00 0.00 2.57
2239 2485 4.634004 ACATCTTCGTGTTTGACTTGTTGA 59.366 37.500 0.00 0.00 0.00 3.18
2240 2486 4.908736 ACATCTTCGTGTTTGACTTGTTG 58.091 39.130 0.00 0.00 0.00 3.33
2241 2487 5.123186 TCAACATCTTCGTGTTTGACTTGTT 59.877 36.000 0.00 0.00 40.17 2.83
2242 2488 4.634004 TCAACATCTTCGTGTTTGACTTGT 59.366 37.500 0.00 0.00 40.17 3.16
2243 2489 5.155509 TCAACATCTTCGTGTTTGACTTG 57.844 39.130 0.00 0.00 40.17 3.16
2244 2490 7.148407 GGATATCAACATCTTCGTGTTTGACTT 60.148 37.037 4.83 0.00 40.17 3.01
2245 2491 6.313905 GGATATCAACATCTTCGTGTTTGACT 59.686 38.462 4.83 0.00 40.17 3.41
2246 2492 6.456988 GGGATATCAACATCTTCGTGTTTGAC 60.457 42.308 4.83 0.00 40.17 3.18
2247 2493 5.584649 GGGATATCAACATCTTCGTGTTTGA 59.415 40.000 4.83 0.00 40.17 2.69
2248 2494 5.353956 TGGGATATCAACATCTTCGTGTTTG 59.646 40.000 4.83 0.00 40.17 2.93
2249 2495 5.354234 GTGGGATATCAACATCTTCGTGTTT 59.646 40.000 4.83 0.00 40.17 2.83
2250 2496 4.876107 GTGGGATATCAACATCTTCGTGTT 59.124 41.667 4.83 0.00 42.75 3.32
2251 2497 4.442706 GTGGGATATCAACATCTTCGTGT 58.557 43.478 4.83 0.00 0.00 4.49
2252 2498 3.809832 GGTGGGATATCAACATCTTCGTG 59.190 47.826 4.83 0.00 0.00 4.35
2253 2499 3.454447 TGGTGGGATATCAACATCTTCGT 59.546 43.478 4.83 0.00 28.08 3.85
2254 2500 4.071961 TGGTGGGATATCAACATCTTCG 57.928 45.455 4.83 0.00 28.08 3.79
2255 2501 4.763793 CCATGGTGGGATATCAACATCTTC 59.236 45.833 2.57 0.00 42.57 2.87
2256 2502 4.168675 ACCATGGTGGGATATCAACATCTT 59.831 41.667 18.99 0.00 42.57 2.40
2257 2503 3.723681 ACCATGGTGGGATATCAACATCT 59.276 43.478 18.99 0.00 42.57 2.90
2258 2504 4.104383 ACCATGGTGGGATATCAACATC 57.896 45.455 18.99 4.13 42.57 3.06
2259 2505 4.079269 TCAACCATGGTGGGATATCAACAT 60.079 41.667 20.60 0.00 45.03 2.71
2260 2506 3.268072 TCAACCATGGTGGGATATCAACA 59.732 43.478 20.60 0.00 43.37 3.33
2261 2507 3.897239 TCAACCATGGTGGGATATCAAC 58.103 45.455 20.60 2.23 43.37 3.18
2262 2508 4.229353 TCTTCAACCATGGTGGGATATCAA 59.771 41.667 20.60 3.25 43.37 2.57
2263 2509 3.785325 TCTTCAACCATGGTGGGATATCA 59.215 43.478 20.60 3.62 43.37 2.15
2264 2510 4.437682 TCTTCAACCATGGTGGGATATC 57.562 45.455 20.60 0.00 43.37 1.63
2265 2511 5.408079 AATCTTCAACCATGGTGGGATAT 57.592 39.130 20.60 5.21 43.37 1.63
2266 2512 4.879295 AATCTTCAACCATGGTGGGATA 57.121 40.909 20.60 2.37 43.37 2.59
2267 2513 3.763557 AATCTTCAACCATGGTGGGAT 57.236 42.857 20.60 15.76 43.37 3.85
2268 2514 3.624707 GCTAATCTTCAACCATGGTGGGA 60.625 47.826 20.60 16.65 43.37 4.37
2269 2515 2.689983 GCTAATCTTCAACCATGGTGGG 59.310 50.000 20.60 14.38 43.37 4.61
2270 2516 2.355756 CGCTAATCTTCAACCATGGTGG 59.644 50.000 20.60 17.03 45.02 4.61
2271 2517 3.270027 TCGCTAATCTTCAACCATGGTG 58.730 45.455 20.60 12.88 0.00 4.17
2272 2518 3.055094 ACTCGCTAATCTTCAACCATGGT 60.055 43.478 13.00 13.00 0.00 3.55
2273 2519 3.535561 ACTCGCTAATCTTCAACCATGG 58.464 45.455 11.19 11.19 0.00 3.66
2274 2520 4.201851 CCAACTCGCTAATCTTCAACCATG 60.202 45.833 0.00 0.00 0.00 3.66
2275 2521 3.941483 CCAACTCGCTAATCTTCAACCAT 59.059 43.478 0.00 0.00 0.00 3.55
2276 2522 3.007506 TCCAACTCGCTAATCTTCAACCA 59.992 43.478 0.00 0.00 0.00 3.67
2277 2523 3.596214 TCCAACTCGCTAATCTTCAACC 58.404 45.455 0.00 0.00 0.00 3.77
2278 2524 5.803020 AATCCAACTCGCTAATCTTCAAC 57.197 39.130 0.00 0.00 0.00 3.18
2279 2525 6.817765 AAAATCCAACTCGCTAATCTTCAA 57.182 33.333 0.00 0.00 0.00 2.69
2280 2526 6.429692 TCAAAAATCCAACTCGCTAATCTTCA 59.570 34.615 0.00 0.00 0.00 3.02
2281 2527 6.842163 TCAAAAATCCAACTCGCTAATCTTC 58.158 36.000 0.00 0.00 0.00 2.87
2282 2528 6.817765 TCAAAAATCCAACTCGCTAATCTT 57.182 33.333 0.00 0.00 0.00 2.40
2283 2529 6.817765 TTCAAAAATCCAACTCGCTAATCT 57.182 33.333 0.00 0.00 0.00 2.40



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.