>input_sequence_84298
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--------------------ATGAGAGTCCCCAGCCTTGCACTGGCGATCCTTGTCCTCGTCGCCCTCTCGGCCGCCACC
GGTCGGCCGGGGGTCCTCGCGGCCAGGAGCCCGGGGGTCCTTCTCGCCTCAACGAGCAGGCGCGGTGCCGAGCAACCGCG
GAGACTCGTCGAGGCTGGCGGCAATGGCGCCCCCGTCGCCAGCTTCGATGCCTCCGGGAAGCCCGTGGCGGCGGCCGGCC
CTTCTCCGCCTCCGACGATGTTCGACGCGGACCGGATGAGCAAGCGGCGAGTCCGGAGAGGCTCCGATCCCATACACAAC
AAATGCTGA-----------------------------------------------------------------------
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>chr2A_1_TraesCS2A01G339300
GCGCATGCGTGGTGGATGAATGAGGAATGTTACCATTTCACACGGAAATGGCGCTCTTTGGGGGCGCGCTTTAAGTTAAA
CCGGGGGATTTGGGAAAGAGAAAGCGAAAGGGCAATGGAATGTCGCTACCAGCGGCAACAGCGTGACG------------
------CTTTGGATCTTTGAACGGGGGCTTTGTGTTTTGGACTGGCCCCACTCAATCCAAGGCGGCAGCAG---CGCGGC
CAAAGAAGAGTGGAGG-------------G-----AACATAAAGCGGCGGCCAACGGGAGCTTCGGCTAGCCGCACAGCA
AGCCAAAGCAGGGGATGCCTCTCTGGTTTCTGGCACA----CATGGGGAGCCGTGCTCCTCCTCCTCCTCCTTGCTTCAC
AGAGAAGCTTCCAAAGTACACAAAGGCGAAAGCACGGGCCCTATGATCTGCGATCCAAAGGAAAAACAACAAAAGACG--
AGAAGATGGCCTCCACTCTACAGCTCCCATGCTCCAAGGCTAGTAGTACTACTCAGTAGAGAGCATTTTTGTTTTCCACC
TGGCAGGACCAA-----ATTTAGCAGCGCCCTGAACAC-AAAACCTCTGCTTTTTCTTTCTTTCGTGGTCACGGTCACGC
TCGCTTGCCTTTCTCTTTTCTGTGATGTGGATTACTGCGGAAAACCCTGCATTACGGAAGATACCTCGGTACCCGATTCG
CCCCCACTAGATTTTAGCAGGCTGTAT-----------------ACGGGGTTTAGAT--------GTGTAAAGCCATATG
TTGCCTTGTTGGGTG--TGTGTGTGTGTGTCCAGTGCACATCGTATCTCCCTCTCT--TTGAGCTTTAGTTTATGCCTTT
GGACCGAGATCTTACCCGTCACCCGCCGCTGTTTCAGATGTGACCCTACGGGGATGCTCTCCTA--------------TA
TCTACAACAACAAAGACACGCAATAACATGGTCCAAGGCTCCAAGCTTCCTCC-------CCATAAAACTTGTGCGCCGC
CAGCCAGGCGAAGCTAAGCCACCCTGGGTGTCACAACT---------------------------------------CAC
ACACTAGCTAGGACACCATGATGAGAGTCCCCAGCCTTGCACTGGCGATCCTTGTCCTCGTCGCCCTCTCGGCCGCCACC
GGTCGGCCGGGGGTCCTCGCGGCCAGGAGCCCGGGGGTCCTTCTCGCCTCAACGAGCAGGCGCGGTGCCGAGCAACCGCG
GAGACTCGTCGAGGCTGGCGGCAATGGCGCCCCCGTCGCCAGCTTCGATGCCTCCGGGAAGCCCGTGGCGGCGGCCGGCC
CTTCTCCGCCTCCGACGATGTTCGACGCGGACCGGATGAGCAAGCGGCGAGTCCGGAGAGGCTCCGATCCCATACACAAC
AAATGCTGAGGATTGGGCGGACCAAATGAGGGCCAGACTAGAAGGGC-CAGCCAACTCTCTCTGTTTCCCTTTGCCTCTC
GTTTTCTTCTTCTTCTTCTTTTGGCGCTTTTTCTTTCCCCTCTTTTGACGTTTGAGTCGTTCCATTCCTTCCGGGGTTCA
ACCGGTTTTGTCATAGAAATACATGTACATAGATGCCGATGAAAGGATGGGCGCATGTGTACCTACTACTTATGACTTGA
ATCTGAATCGAGCATTGTCCTTCCGGATACGTACGTAACTCAGTTTTACAGTACG-TACTTTTTAAGATTCGTTCAGTTC
CCGAGCTGAGATTTGCACGACGAAATGCCTCATGGTGAGTGG--------------------------------------
-------TCGGCGACCAGATCACTTCACTTCAAGGGG-------------------------------------------
--------------CGCGCACACGAGGGTGGCACCTAGCCCGCTTCACCGCTGGTGCCACGCGAACAGGGGCGTGTGCCG
TCGAGGGTTGCATCCGTAGTTCTTGGCTGCCTGCTCGTCACTGACAATC-AACAGCTTAGCCGATGGGCTGAAGACGAGC
ACGCTTGGCGGCGCTGCCTGCTACTAGTATTTAGGGCATGTACAATGATGCTATCTTAGAAGTGTCACATAGGATAAACG
ATGAGGTGAAGGAGAGAGAAGTCTTAAAAAAAGGTTTGTCTTCTCTTATTTAAGATAAGACAAGAGGTGATCTCTTAGCA
TAATATGTGTCACCATGTTTTTAGGAATGTCTAGTTATTGAAGATAAGGCTAAGAGATGACCCATTGTATACATATTTTT
TTGTCATCTCTAAATTACATGCAAAAATTAAAATAAAACTATCTTATCAATCATTGTACACGCCCTTACAGTTAGTACCA
CACCGCTCGTTCGGGTAGCCACTTCGCTTTCAACAAACCTCGCCAAATTTAGGGAGGAACACCTCCAACGAGGCAAATTC
TTCATCAACAAGTCAAACACGAAGATGTTGATATCCCACCATGGTTGAAGATTAGCGAGTTGGATTTTTGAAAT
>chr2D_3
--GCATGCGTGGTGAATGAACGAGGAATGTTACCATTTCACACGGAAATGGCGCTCTTTGGGGGCGCGCTTTAAGTTAAA
CCGAGGGATTTCGGAAAGAGAAAGCGAAAGGGGAATGGAATGTCGCTACCGGCGGCAACAGCGTGGGGCTTTGGCTGTGG
CCGAGCCTTTGGATCTTTGAACGGGGGCTTTGTGTTTTGGACTGACCCCACTCAATCCAAGGCAGCAGCAGGACAGTGGG
TGCCCACTCTGCCAAGCAAAGAAGGGAGTGAACATAACATAAAGCGGCGTCCAGCGGGAGCTTCGGCTAGCGGCACAGCA
AGCCAAAGCAGGGGATGCCTCTCTTGTTTCTGGCACA----CATGGGGAGCCGTGCTCCTCCT---------TGCTTCAC
AGAGAAGCTTCCAAAGTACACAAAGGCGAAAGCA-CGGGCCTATGATCTGCGATCCAAAGGAAAAACAACAAAAGACG--
AGAAGATGGTCTCCACTCTACAGCTCCCAGGCTCCAAGGCTAGTAGAGA--------------CATTTTTGTTTTCCACC
TGGCACGACCATACT--ATTTAGCAGCGCCCTGAACAC-AAAACCTCTGCTTTTTCTTTCTTTCGTGGTCACGGTCACGC
TCACTTGCCTTTTTCTTTTCTGTGATGTGGATTACTGCGGAAAACCCTGCATTACGGAAGATACCTCGGTACCTGATTCG
CCCCCACTAGATTTTAGCAGCCTGTATGTAT-------------ACGGGGTTTACATGCAAGCAAGTGTAAAGCCATATG
TTGCCTTGTTGGGTG--TGTGT--------CCAGTGCACATCGTATCTCCCTCTCTCTTTGAGCTTT-ATTTATGCCTTT
GGACCAAGATCTTACCCGTCACCCGTCGCTGTTTCAGATGTGACCCTACGGGGATACCCTCCTCTCCTCTCCTATATCTA
TCTACAACAACAGAGACACGCAATAAGATGGTCCAAG--------CTTCCTCCACT-CCCCCATAAAACTTGTGTGCCGC
CAA----GCTAAGCTAAGCCACCTTTGGAGGTGTCTCACAGCTCACTACTCATAGGGGAGGAGAGAGAGCGCGCGCGCAC
ACACTAGATACGACAGGATGATGAGAGTACCCAGCCTTGCACTGGCGATCCTTGTCCTCGTCGCCCTCTCGGCCGGCACC
AGCCGTCCGGGGGTCCTCGCGGCCAGGAGCCCGGGCGTCCTTCTCGCCCCGACGAGCAGCCGCGGTGTCGAGCAACCGCA
GAGACTCGTCGAGGCTGGCGGCAATGGCGCCCCCGCCGCTAGCTTGGATGCCTCCGGGAAGCCCGTGGCGGCGGCCGGCC
CTTCTCCGCCTCCGACGGTGTTCGACGCGGACCGGATGAGCAAGCGGCGAGTCCGGAGAGGCTCCGATCCCATACACAAC
AAATGCTGAGGATTGGGCGGACCCATTGATGGCCGGACTTGAAGGCCACAGCCAACTCTCTTTGTTTCACTTTGCCTCTC
GTTTTCTTCTTCTTCTTCCTTTTGCGCTTTTT-TTTCACCTCTCTTGAGGTTTGAGTCGTTCCATTCCTTCTGGGGTTCA
ACCGGTTTTGTCATAGAAATACATGTACATAGATGCCGATGGAAGGATGGGCGCATGTGTACCTACTACTTATTACTTGA
GTCTGAATCGAGCATTGTCCTTCCGGATACGTACGCAACTCAGTTTTACAGTAGTATACTTTTCAAGATTCCTTCAGTTC
CCGAGCTGAGATTTGCACGACGAAATGCCTCATGGTGAGTGGGTGGG-------------------------------TG
CTCCACTTCGGCGACCAGATCACTTCACTTCAAGGGG-------------------------------------------
--------------CGCGCACACGAGGGTGGCACCTAGCCCGGTTCACCGCTGGTGCCACGCGAACAGGGGCGTGTGCCG
TCGCGGGTTGCGTCCGTAGTTCTTGGCTGCCTGCTCGTCACTGACAATCGAACAGCTTAGCCGGTGGGCCAAAGACGAGC
ACGCTTGACGGCGCTGCGTGCTACTA------------------------------------------------------
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>chr2B_6
-----TGGGTGGTGAATGAATGAGGAATGTTACCATTTCACACGGAAATGGCGCTCTTTGGGGGCGCGCTTTAAGTTAAA
CCGAGGGATTTCGGAAAGAGAAAGCGAAAGGGGAATGGAATGTCGCTACCAGCGGCAACAGCGTGAGG------------
------CTTTGGATCTTTGAACGGGGGCTTTGGGTTTTGGACTGGCCCCACTCAATCCAAGGCAGCAGCAGCAGCGCGGC
CAAAGAAGAGTGGAGG-------------GAACATAACATAAAGCGGCGGCCAGCGGGAGCTTCGGCTA---GCACAGCA
AGCCAAAGCAGGGGATGCCTCTCTTGTTTCTGGCACACATGCATGGGGAGCCGTGCTCCTCCT---------TGCTTCAC
AGAGAAGCTTCCAAAGTACACAAAGGCGAAAGCAACGAGCCTGTGATCTGCGATCCAAAGGAAAAACAACAAAGACGAGA
AGAAGATGGTCTCCACTCTACAGCTCCCAGGCTCCAAGGCTAGTAC-------CAGTAGAGAGCATTTTTGTTTTCCACC
TGGCAGGACCATACTGTATTTAGTAGCGCCCTCGACACAAAAACCTCTGCTTTTTCTTTCTTTCGTGGTCACGCTCACGG
TCCCTCGCCTTTCTCTTTTCTGTGATGTGGATTACTGCGGAAAACCCTGCATTACGGAAGATACCTAGGCGCCTGATTCG
CCCCCACTAGATTTTAGCAGGCTGTATGTATGTATACGGCCAATACGGGATTTAGATGCAAGCAAGTGTAAAGCCATATG
TTGCCTTGTTGGGTGTGTGTGT--------CCAATGCACATCGTATCTCCCTCTCT--TTGAGCTTTAATTTATGCCTTT
GGACCAAGATCTTACCCGTC-------GCTGTTTCAGATGTGACCCTACGGGGATACTCTCCTA--------------TA
TCTACAACAACAAACACACGCAATAACATGGTCCAAGGCTCCAAGCTTCCTCCACTGCCCCCATAAAACTTGTGCGCCGC
CAGCCAGGCGAAGCTAAGCCACCTTGGGTGTCACAACTCTCTCTCACA-----------------------------CAC
ACACTAGCCAGGACATCATGATGAGAGTCCCCAGCCTTGCACTGGCGATCCTTGTCCTCCTCGCCCTCTCGGCCGCCACC
GGTCGTCCGGCGGTCCTCGCGGCCAGGACCCCGGGCGTCCTTCTCGCCCCAACAAGCAGCCGCGGTGTCGACCAACCGCG
GAGGCTCGTCGAGGCTGGCGGCAATGGCGCCCCCGCCGCCAGCCTGGACGCCTCCGGGAAGCCCGTGGCGGCGGCCGGCT
CTTCTCCGCCTCCGACGGTGTTCGACGCGGACCGGATGAGCAAGCGGCGAGTCCGGAGAGGCTCCGATCCCATACACAAC
AAATGCTGAGGATTGGGCGGACCAAATGATGGCCAGACTTGAAGGGC-CAGCCAAATCTCTCTGTTTCCTCTTGCCCCTC
GTTTTCTTCTTCTTCTTTCTTTGGCGCTTTTT-TT--CCCTCTCTTGAGGTTTGAGTCGTTCCATTCCTTCTGGGGTTCA
ACCGGTTTTGTCATAGAAATACATGTACATAGATGCCGATGAAAGGATGGGCGCATGTGTAC---CTACTTATTACTTGA
GTCTGAATCGAGCATTGTCCTTCCGGATACGTACGCAACTCAGTTTTACAGTAGCATACCTTTTAAGATTCGTTCAGTTC
CCGAGCTGAGATTTGCACGACGAAATGCCTCATGGTGAGTGGGTGGGTGCCTTGGTGGAAAATGGCACGGAAACTTCCTG
CTCCACTTCGACGACTAGATCACTTCACTTCAAGTCTTCAACGTGGCCGGTGTCTCAAGGCGGCTGAGCCAGGCGAAGGG
TCCGGTACTGGGGACGCGCGCACGAGGGTGGCCCCTAGCCCGGTTCACCGCTGGTGTCACGCGAACAGGGGCGTGTGCCG
TCGCGGGTTGCATCCTTAGTTCTTGGCTGCCTGCTCGTCACTGACAATCGAACAGCTTAGCCGGCGGGCCGAAGACGAGC
ACACTTGACGGCGCTGCGTGCTACTAGTATTTA-----------------------------------------------
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>SNPs
SS------------S-----------------------------------------------------------------
---S-------S--------------------S---------------------------------S-------------
---------------------------------------------------------------S----------------
-----------------------------------------------------S-----------------S--------
------------------------S--------------------------------------SSSSSSSSS--------
----------------------------------SS--S-----------------------------------------
---------S-------------------S----------------SSSSSSS---------------------------
-----------S--------------------------------------------------------------------
--S----------------------------------------------------------------------S------
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----------------------SSSSSSSS--------------------------------------S-----------
-----S-------------------S-----------------------------S------------------------
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-----------------------S--------------------------------------------------------
---------------S----------------------------------------------------------------
-----S-----------------------------S------------S----------S-------S------------
-----------------------------------S---------S----------------------------------
-----------------S--------------------------------------------------------------
-----------------------------S---------S----------------------------------------
------------------S-------------S----------S----S----------------------S--------
-------------------------------------------------------------------------S------
S----------------------------------S-----------------SS-------------------------
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------------------------------------------S-------------------------------------
---S-----------------------------------------------------------S-----S----------
-------S---------S---------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_829
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---------GTTGGGTGTGTGTGTGTGTG---------------------------------------------------
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>reverse_2391
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----------------------------------------------------------------------GTTAGTACCA
CACCGCTCGT----------------------------------------------------------------------
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