Multiple sequence alignment - TraesCS2A01G333500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G333500 chr2A 100.000 3011 0 0 1 3011 566860881 566857871 0.000000e+00 5561.0
1 TraesCS2A01G333500 chr2D 90.339 2391 141 41 188 2521 420901996 420899639 0.000000e+00 3053.0
2 TraesCS2A01G333500 chr2B 90.748 1697 66 37 728 2358 493567581 493565910 0.000000e+00 2180.0
3 TraesCS2A01G333500 chr2B 84.337 166 12 1 2370 2521 493565803 493565638 1.870000e-32 150.0
4 TraesCS2A01G333500 chr2B 79.024 205 38 5 2522 2724 666079910 666079709 5.240000e-28 135.0
5 TraesCS2A01G333500 chr1D 86.106 511 47 15 2522 3011 257963353 257962846 2.060000e-146 529.0
6 TraesCS2A01G333500 chr6B 82.517 286 50 0 2522 2807 624609073 624609358 4.980000e-63 252.0
7 TraesCS2A01G333500 chr6B 77.778 234 36 15 2555 2780 667163743 667163968 2.440000e-26 130.0
8 TraesCS2A01G333500 chr6B 95.000 60 3 0 1352 1411 147056516 147056575 8.890000e-16 95.3
9 TraesCS2A01G333500 chr6B 90.909 44 3 1 1179 1222 89513877 89513919 1.170000e-04 58.4
10 TraesCS2A01G333500 chr7B 79.918 244 42 7 2521 2761 734383499 734383738 3.990000e-39 172.0
11 TraesCS2A01G333500 chr7A 76.562 256 54 6 2522 2774 690397176 690397428 5.240000e-28 135.0
12 TraesCS2A01G333500 chr1B 76.735 245 53 4 2522 2764 24113428 24113186 1.880000e-27 134.0
13 TraesCS2A01G333500 chrUn 78.431 204 40 4 2523 2724 213609203 213609404 2.440000e-26 130.0
14 TraesCS2A01G333500 chrUn 93.182 44 2 1 1179 1222 114968230 114968188 2.510000e-06 63.9
15 TraesCS2A01G333500 chr3D 75.758 264 55 9 2521 2780 505454494 505454236 1.130000e-24 124.0
16 TraesCS2A01G333500 chr3D 91.781 73 6 0 1339 1411 170659625 170659697 5.310000e-18 102.0
17 TraesCS2A01G333500 chr3A 91.781 73 6 0 1339 1411 208222074 208222146 5.310000e-18 102.0
18 TraesCS2A01G333500 chr3A 89.041 73 8 0 1339 1411 208089767 208089695 1.150000e-14 91.6
19 TraesCS2A01G333500 chr6D 95.000 60 3 0 1352 1411 72405979 72406038 8.890000e-16 95.3
20 TraesCS2A01G333500 chr3B 89.041 73 8 0 1339 1411 245969780 245969708 1.150000e-14 91.6
21 TraesCS2A01G333500 chr3B 87.671 73 9 0 1339 1411 245964036 245963964 5.350000e-13 86.1
22 TraesCS2A01G333500 chr6A 78.448 116 17 6 1111 1222 50034710 50034821 5.390000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G333500 chr2A 566857871 566860881 3010 True 5561 5561 100.0000 1 3011 1 chr2A.!!$R1 3010
1 TraesCS2A01G333500 chr2D 420899639 420901996 2357 True 3053 3053 90.3390 188 2521 1 chr2D.!!$R1 2333
2 TraesCS2A01G333500 chr2B 493565638 493567581 1943 True 1165 2180 87.5425 728 2521 2 chr2B.!!$R2 1793
3 TraesCS2A01G333500 chr1D 257962846 257963353 507 True 529 529 86.1060 2522 3011 1 chr1D.!!$R1 489

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
79 80 0.033405 TCTTCGGGAGGGGTAGTCTG 60.033 60.0 0.0 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2037 2091 0.668401 GGCACAACATCAGGCAAAGC 60.668 55.0 0.0 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.989279 CATCCCTGAAACCCTTAATGTG 57.011 45.455 0.00 0.00 0.00 3.21
22 23 4.599041 CATCCCTGAAACCCTTAATGTGA 58.401 43.478 0.00 0.00 0.00 3.58
23 24 4.733077 TCCCTGAAACCCTTAATGTGAA 57.267 40.909 0.00 0.00 0.00 3.18
24 25 4.403734 TCCCTGAAACCCTTAATGTGAAC 58.596 43.478 0.00 0.00 0.00 3.18
25 26 4.105697 TCCCTGAAACCCTTAATGTGAACT 59.894 41.667 0.00 0.00 0.00 3.01
26 27 4.832823 CCCTGAAACCCTTAATGTGAACTT 59.167 41.667 0.00 0.00 0.00 2.66
27 28 5.304357 CCCTGAAACCCTTAATGTGAACTTT 59.696 40.000 0.00 0.00 0.00 2.66
28 29 6.183360 CCCTGAAACCCTTAATGTGAACTTTT 60.183 38.462 0.00 0.00 0.00 2.27
29 30 6.923508 CCTGAAACCCTTAATGTGAACTTTTC 59.076 38.462 0.00 0.00 0.00 2.29
30 31 6.500041 TGAAACCCTTAATGTGAACTTTTCG 58.500 36.000 0.00 0.00 0.00 3.46
31 32 4.499037 ACCCTTAATGTGAACTTTTCGC 57.501 40.909 0.00 0.00 40.51 4.70
32 33 4.142038 ACCCTTAATGTGAACTTTTCGCT 58.858 39.130 1.51 0.00 40.72 4.93
33 34 4.583073 ACCCTTAATGTGAACTTTTCGCTT 59.417 37.500 1.51 0.00 40.72 4.68
34 35 5.154222 CCCTTAATGTGAACTTTTCGCTTC 58.846 41.667 1.51 0.00 40.72 3.86
35 36 5.278266 CCCTTAATGTGAACTTTTCGCTTCA 60.278 40.000 1.51 0.00 40.72 3.02
36 37 6.381801 CCTTAATGTGAACTTTTCGCTTCAT 58.618 36.000 1.51 0.00 40.72 2.57
37 38 6.306356 CCTTAATGTGAACTTTTCGCTTCATG 59.694 38.462 1.51 0.00 40.72 3.07
38 39 3.624326 TGTGAACTTTTCGCTTCATGG 57.376 42.857 0.00 0.00 40.72 3.66
39 40 3.210227 TGTGAACTTTTCGCTTCATGGA 58.790 40.909 0.00 0.00 40.72 3.41
40 41 3.250762 TGTGAACTTTTCGCTTCATGGAG 59.749 43.478 0.00 0.00 40.72 3.86
41 42 2.226437 TGAACTTTTCGCTTCATGGAGC 59.774 45.455 16.69 16.69 39.29 4.70
42 43 1.168714 ACTTTTCGCTTCATGGAGCC 58.831 50.000 20.60 2.92 39.51 4.70
43 44 0.097674 CTTTTCGCTTCATGGAGCCG 59.902 55.000 20.60 14.92 39.51 5.52
44 45 1.922135 TTTTCGCTTCATGGAGCCGC 61.922 55.000 20.60 0.00 39.51 6.53
45 46 2.803155 TTTCGCTTCATGGAGCCGCT 62.803 55.000 20.60 0.00 39.51 5.52
46 47 1.955495 TTCGCTTCATGGAGCCGCTA 61.955 55.000 20.60 0.61 39.51 4.26
47 48 2.240500 CGCTTCATGGAGCCGCTAC 61.241 63.158 20.60 0.00 39.51 3.58
48 49 1.889573 GCTTCATGGAGCCGCTACC 60.890 63.158 15.77 1.09 36.66 3.18
49 50 1.522092 CTTCATGGAGCCGCTACCA 59.478 57.895 12.23 12.23 40.57 3.25
50 51 0.107456 CTTCATGGAGCCGCTACCAT 59.893 55.000 14.93 14.93 46.22 3.55
51 52 0.106708 TTCATGGAGCCGCTACCATC 59.893 55.000 16.84 0.00 43.89 3.51
52 53 0.760567 TCATGGAGCCGCTACCATCT 60.761 55.000 16.84 1.85 43.89 2.90
53 54 0.320247 CATGGAGCCGCTACCATCTC 60.320 60.000 16.84 0.00 43.89 2.75
54 55 0.470833 ATGGAGCCGCTACCATCTCT 60.471 55.000 14.93 0.00 42.35 3.10
55 56 1.365633 GGAGCCGCTACCATCTCTG 59.634 63.158 0.00 0.00 0.00 3.35
56 57 1.395826 GGAGCCGCTACCATCTCTGT 61.396 60.000 0.00 0.00 0.00 3.41
57 58 0.461961 GAGCCGCTACCATCTCTGTT 59.538 55.000 0.00 0.00 0.00 3.16
58 59 0.461961 AGCCGCTACCATCTCTGTTC 59.538 55.000 0.00 0.00 0.00 3.18
59 60 0.461961 GCCGCTACCATCTCTGTTCT 59.538 55.000 0.00 0.00 0.00 3.01
60 61 1.134670 GCCGCTACCATCTCTGTTCTT 60.135 52.381 0.00 0.00 0.00 2.52
61 62 2.815478 CCGCTACCATCTCTGTTCTTC 58.185 52.381 0.00 0.00 0.00 2.87
62 63 2.428890 CCGCTACCATCTCTGTTCTTCT 59.571 50.000 0.00 0.00 0.00 2.85
63 64 3.118956 CCGCTACCATCTCTGTTCTTCTT 60.119 47.826 0.00 0.00 0.00 2.52
64 65 4.109050 CGCTACCATCTCTGTTCTTCTTC 58.891 47.826 0.00 0.00 0.00 2.87
65 66 4.109050 GCTACCATCTCTGTTCTTCTTCG 58.891 47.826 0.00 0.00 0.00 3.79
66 67 3.601443 ACCATCTCTGTTCTTCTTCGG 57.399 47.619 0.00 0.00 0.00 4.30
67 68 2.234908 ACCATCTCTGTTCTTCTTCGGG 59.765 50.000 0.00 0.00 0.00 5.14
68 69 2.497675 CCATCTCTGTTCTTCTTCGGGA 59.502 50.000 0.00 0.00 0.00 5.14
69 70 3.430098 CCATCTCTGTTCTTCTTCGGGAG 60.430 52.174 0.00 0.00 0.00 4.30
70 71 2.171840 TCTCTGTTCTTCTTCGGGAGG 58.828 52.381 0.00 0.00 0.00 4.30
71 72 1.205893 CTCTGTTCTTCTTCGGGAGGG 59.794 57.143 0.00 0.00 0.00 4.30
72 73 0.250513 CTGTTCTTCTTCGGGAGGGG 59.749 60.000 0.00 0.00 0.00 4.79
73 74 0.473117 TGTTCTTCTTCGGGAGGGGT 60.473 55.000 0.00 0.00 0.00 4.95
74 75 1.203212 TGTTCTTCTTCGGGAGGGGTA 60.203 52.381 0.00 0.00 0.00 3.69
75 76 1.481363 GTTCTTCTTCGGGAGGGGTAG 59.519 57.143 0.00 0.00 0.00 3.18
76 77 0.708802 TCTTCTTCGGGAGGGGTAGT 59.291 55.000 0.00 0.00 0.00 2.73
77 78 1.112950 CTTCTTCGGGAGGGGTAGTC 58.887 60.000 0.00 0.00 0.00 2.59
78 79 0.708802 TTCTTCGGGAGGGGTAGTCT 59.291 55.000 0.00 0.00 0.00 3.24
79 80 0.033405 TCTTCGGGAGGGGTAGTCTG 60.033 60.000 0.00 0.00 0.00 3.51
80 81 0.033405 CTTCGGGAGGGGTAGTCTGA 60.033 60.000 0.00 0.00 0.00 3.27
81 82 0.410663 TTCGGGAGGGGTAGTCTGAA 59.589 55.000 0.00 0.00 0.00 3.02
82 83 0.033405 TCGGGAGGGGTAGTCTGAAG 60.033 60.000 0.00 0.00 0.00 3.02
83 84 0.033405 CGGGAGGGGTAGTCTGAAGA 60.033 60.000 0.00 0.00 0.00 2.87
84 85 1.618888 CGGGAGGGGTAGTCTGAAGAA 60.619 57.143 0.00 0.00 0.00 2.52
85 86 1.832366 GGGAGGGGTAGTCTGAAGAAC 59.168 57.143 0.00 0.00 0.00 3.01
86 87 2.537143 GGAGGGGTAGTCTGAAGAACA 58.463 52.381 0.00 0.00 0.00 3.18
87 88 2.904434 GGAGGGGTAGTCTGAAGAACAA 59.096 50.000 0.00 0.00 0.00 2.83
88 89 3.306849 GGAGGGGTAGTCTGAAGAACAAC 60.307 52.174 0.00 0.00 0.00 3.32
89 90 2.638363 AGGGGTAGTCTGAAGAACAACC 59.362 50.000 0.00 0.00 0.00 3.77
90 91 2.638363 GGGGTAGTCTGAAGAACAACCT 59.362 50.000 6.84 0.00 0.00 3.50
91 92 3.306849 GGGGTAGTCTGAAGAACAACCTC 60.307 52.174 6.84 0.96 0.00 3.85
92 93 3.576648 GGTAGTCTGAAGAACAACCTCG 58.423 50.000 0.00 0.00 0.00 4.63
93 94 3.255149 GGTAGTCTGAAGAACAACCTCGA 59.745 47.826 0.00 0.00 0.00 4.04
94 95 3.651803 AGTCTGAAGAACAACCTCGAG 57.348 47.619 5.13 5.13 0.00 4.04
95 96 2.297597 AGTCTGAAGAACAACCTCGAGG 59.702 50.000 30.11 30.11 42.17 4.63
96 97 1.618837 TCTGAAGAACAACCTCGAGGG 59.381 52.381 34.04 20.19 40.27 4.30
97 98 1.618837 CTGAAGAACAACCTCGAGGGA 59.381 52.381 34.04 6.36 40.27 4.20
98 99 1.618837 TGAAGAACAACCTCGAGGGAG 59.381 52.381 34.04 26.47 40.27 4.30
107 108 3.788672 CTCGAGGGAGGGGAATTTG 57.211 57.895 3.91 0.00 36.61 2.32
108 109 0.912486 CTCGAGGGAGGGGAATTTGT 59.088 55.000 3.91 0.00 36.61 2.83
109 110 1.282157 CTCGAGGGAGGGGAATTTGTT 59.718 52.381 3.91 0.00 36.61 2.83
110 111 1.004277 TCGAGGGAGGGGAATTTGTTG 59.996 52.381 0.00 0.00 0.00 3.33
111 112 1.186200 GAGGGAGGGGAATTTGTTGC 58.814 55.000 0.00 0.00 0.00 4.17
112 113 0.252239 AGGGAGGGGAATTTGTTGCC 60.252 55.000 0.00 0.00 0.00 4.52
113 114 0.544120 GGGAGGGGAATTTGTTGCCA 60.544 55.000 1.22 0.00 33.67 4.92
114 115 1.571955 GGAGGGGAATTTGTTGCCAT 58.428 50.000 1.22 0.00 33.67 4.40
115 116 1.482182 GGAGGGGAATTTGTTGCCATC 59.518 52.381 5.03 5.03 41.56 3.51
116 117 1.134946 GAGGGGAATTTGTTGCCATCG 59.865 52.381 1.22 0.00 33.83 3.84
117 118 0.894835 GGGGAATTTGTTGCCATCGT 59.105 50.000 1.22 0.00 33.67 3.73
118 119 1.275010 GGGGAATTTGTTGCCATCGTT 59.725 47.619 1.22 0.00 33.67 3.85
119 120 2.336667 GGGAATTTGTTGCCATCGTTG 58.663 47.619 0.00 0.00 32.14 4.10
120 121 2.288763 GGGAATTTGTTGCCATCGTTGT 60.289 45.455 0.00 0.00 32.14 3.32
121 122 2.986479 GGAATTTGTTGCCATCGTTGTC 59.014 45.455 0.00 0.00 0.00 3.18
122 123 3.551863 GGAATTTGTTGCCATCGTTGTCA 60.552 43.478 0.00 0.00 0.00 3.58
123 124 3.724508 ATTTGTTGCCATCGTTGTCAA 57.275 38.095 0.00 0.00 0.00 3.18
124 125 2.483583 TTGTTGCCATCGTTGTCAAC 57.516 45.000 12.25 12.25 39.23 3.18
125 126 1.383523 TGTTGCCATCGTTGTCAACA 58.616 45.000 16.64 16.64 44.23 3.33
126 127 1.745653 TGTTGCCATCGTTGTCAACAA 59.254 42.857 17.87 0.00 43.71 2.83
137 138 3.924114 TTGTCAACAACCTCTTCTCCA 57.076 42.857 0.00 0.00 0.00 3.86
138 139 4.437682 TTGTCAACAACCTCTTCTCCAT 57.562 40.909 0.00 0.00 0.00 3.41
139 140 4.008074 TGTCAACAACCTCTTCTCCATC 57.992 45.455 0.00 0.00 0.00 3.51
140 141 3.390967 TGTCAACAACCTCTTCTCCATCA 59.609 43.478 0.00 0.00 0.00 3.07
141 142 4.042062 TGTCAACAACCTCTTCTCCATCAT 59.958 41.667 0.00 0.00 0.00 2.45
142 143 4.633565 GTCAACAACCTCTTCTCCATCATC 59.366 45.833 0.00 0.00 0.00 2.92
143 144 4.286808 TCAACAACCTCTTCTCCATCATCA 59.713 41.667 0.00 0.00 0.00 3.07
144 145 5.045359 TCAACAACCTCTTCTCCATCATCAT 60.045 40.000 0.00 0.00 0.00 2.45
145 146 4.778579 ACAACCTCTTCTCCATCATCATG 58.221 43.478 0.00 0.00 0.00 3.07
146 147 4.472470 ACAACCTCTTCTCCATCATCATGA 59.528 41.667 0.00 0.00 30.57 3.07
147 148 5.132312 ACAACCTCTTCTCCATCATCATGAT 59.868 40.000 1.18 1.18 37.65 2.45
148 149 6.328410 ACAACCTCTTCTCCATCATCATGATA 59.672 38.462 8.15 0.00 34.28 2.15
149 150 7.017353 ACAACCTCTTCTCCATCATCATGATAT 59.983 37.037 8.15 0.12 34.28 1.63
150 151 7.571071 ACCTCTTCTCCATCATCATGATATT 57.429 36.000 8.15 0.00 34.28 1.28
151 152 7.986704 ACCTCTTCTCCATCATCATGATATTT 58.013 34.615 8.15 0.00 34.28 1.40
152 153 8.102047 ACCTCTTCTCCATCATCATGATATTTC 58.898 37.037 8.15 0.00 34.28 2.17
153 154 7.553402 CCTCTTCTCCATCATCATGATATTTCC 59.447 40.741 8.15 0.00 34.28 3.13
154 155 7.981142 TCTTCTCCATCATCATGATATTTCCA 58.019 34.615 8.15 0.00 34.28 3.53
155 156 7.881751 TCTTCTCCATCATCATGATATTTCCAC 59.118 37.037 8.15 0.00 34.28 4.02
156 157 7.325725 TCTCCATCATCATGATATTTCCACT 57.674 36.000 8.15 0.00 34.28 4.00
157 158 7.392418 TCTCCATCATCATGATATTTCCACTC 58.608 38.462 8.15 0.00 34.28 3.51
158 159 7.016858 TCTCCATCATCATGATATTTCCACTCA 59.983 37.037 8.15 0.00 34.28 3.41
159 160 6.938596 TCCATCATCATGATATTTCCACTCAC 59.061 38.462 8.15 0.00 34.28 3.51
160 161 6.128363 CCATCATCATGATATTTCCACTCACG 60.128 42.308 8.15 0.00 34.28 4.35
161 162 5.917462 TCATCATGATATTTCCACTCACGT 58.083 37.500 8.15 0.00 0.00 4.49
162 163 5.754890 TCATCATGATATTTCCACTCACGTG 59.245 40.000 9.94 9.94 40.89 4.49
163 164 5.084818 TCATGATATTTCCACTCACGTGT 57.915 39.130 16.51 0.00 39.55 4.49
164 165 4.869861 TCATGATATTTCCACTCACGTGTG 59.130 41.667 16.51 16.06 39.55 3.82
165 166 4.529109 TGATATTTCCACTCACGTGTGA 57.471 40.909 23.32 9.73 40.12 3.58
177 178 4.345859 TCACGTGTGAGTAATTTTCCCT 57.654 40.909 16.51 0.00 34.14 4.20
178 179 5.471556 TCACGTGTGAGTAATTTTCCCTA 57.528 39.130 16.51 0.00 34.14 3.53
179 180 5.475719 TCACGTGTGAGTAATTTTCCCTAG 58.524 41.667 16.51 0.00 34.14 3.02
180 181 4.630069 CACGTGTGAGTAATTTTCCCTAGG 59.370 45.833 7.58 0.06 0.00 3.02
181 182 3.621715 CGTGTGAGTAATTTTCCCTAGGC 59.378 47.826 2.05 0.00 0.00 3.93
182 183 4.585879 GTGTGAGTAATTTTCCCTAGGCA 58.414 43.478 2.05 0.00 0.00 4.75
183 184 5.193679 GTGTGAGTAATTTTCCCTAGGCAT 58.806 41.667 2.05 0.00 0.00 4.40
184 185 6.354130 GTGTGAGTAATTTTCCCTAGGCATA 58.646 40.000 2.05 0.00 0.00 3.14
185 186 6.998673 GTGTGAGTAATTTTCCCTAGGCATAT 59.001 38.462 2.05 0.00 0.00 1.78
186 187 6.998074 TGTGAGTAATTTTCCCTAGGCATATG 59.002 38.462 2.05 0.00 0.00 1.78
199 200 6.071278 CCCTAGGCATATGAGTAGTTTAGGTC 60.071 46.154 6.97 0.00 0.00 3.85
202 203 6.136857 AGGCATATGAGTAGTTTAGGTCAGA 58.863 40.000 6.97 0.00 0.00 3.27
203 204 6.266558 AGGCATATGAGTAGTTTAGGTCAGAG 59.733 42.308 6.97 0.00 0.00 3.35
229 230 5.681337 TTTAGTCATCACATGTTTTGCGA 57.319 34.783 0.00 0.00 0.00 5.10
231 232 4.087510 AGTCATCACATGTTTTGCGATG 57.912 40.909 14.08 14.08 43.34 3.84
234 235 1.902938 TCACATGTTTTGCGATGGGA 58.097 45.000 0.00 0.00 29.25 4.37
246 247 4.221422 ATGGGACGGATGGCGACG 62.221 66.667 0.00 0.00 0.00 5.12
251 252 4.446413 ACGGATGGCGACGGTTCC 62.446 66.667 0.00 0.00 0.00 3.62
254 255 2.202892 GATGGCGACGGTTCCTCC 60.203 66.667 0.00 0.00 0.00 4.30
260 261 2.490685 GACGGTTCCTCCTCGAGC 59.509 66.667 6.99 0.00 0.00 5.03
269 270 0.179113 CCTCCTCGAGCTGCTCTTTC 60.179 60.000 25.59 2.29 0.00 2.62
290 291 1.657822 GGTTTCAATCCTCCTCGAGC 58.342 55.000 6.99 0.00 0.00 5.03
296 297 1.104577 AATCCTCCTCGAGCTCGTCC 61.105 60.000 33.33 0.00 40.80 4.79
299 300 2.359602 TCCTCGAGCTCGTCCGTT 60.360 61.111 33.33 0.00 40.80 4.44
302 303 2.430244 TCGAGCTCGTCCGTTTGC 60.430 61.111 33.33 0.00 40.80 3.68
306 307 1.005037 AGCTCGTCCGTTTGCATGA 60.005 52.632 0.00 0.00 0.00 3.07
310 311 1.126846 CTCGTCCGTTTGCATGAAGTC 59.873 52.381 0.00 0.00 0.00 3.01
313 314 0.250124 TCCGTTTGCATGAAGTCGGT 60.250 50.000 15.20 0.00 39.14 4.69
314 315 0.110238 CCGTTTGCATGAAGTCGGTG 60.110 55.000 0.00 0.00 34.38 4.94
315 316 0.865111 CGTTTGCATGAAGTCGGTGA 59.135 50.000 0.00 0.00 0.00 4.02
321 322 1.363744 CATGAAGTCGGTGAAGCTCC 58.636 55.000 0.00 0.00 0.00 4.70
332 333 2.416972 GGTGAAGCTCCGACGTAGATTT 60.417 50.000 0.00 0.00 0.00 2.17
336 337 4.097437 TGAAGCTCCGACGTAGATTTATGT 59.903 41.667 0.00 0.00 0.00 2.29
337 338 4.226113 AGCTCCGACGTAGATTTATGTC 57.774 45.455 5.70 5.70 40.77 3.06
338 339 3.884091 AGCTCCGACGTAGATTTATGTCT 59.116 43.478 12.39 0.00 41.60 3.41
339 340 3.975670 GCTCCGACGTAGATTTATGTCTG 59.024 47.826 12.39 7.22 41.60 3.51
340 341 3.961182 TCCGACGTAGATTTATGTCTGC 58.039 45.455 12.39 0.00 41.60 4.26
341 342 3.050619 CCGACGTAGATTTATGTCTGCC 58.949 50.000 12.39 0.00 41.60 4.85
353 354 0.547471 TGTCTGCCATCTCCTTGGGA 60.547 55.000 0.00 0.00 37.24 4.37
361 362 2.367512 CTCCTTGGGAGGGAGGGG 60.368 72.222 5.73 0.00 45.43 4.79
362 363 4.038804 TCCTTGGGAGGGAGGGGG 62.039 72.222 0.00 0.00 43.72 5.40
378 379 1.919240 GGGGGTTAGGGTTTCTTGTG 58.081 55.000 0.00 0.00 0.00 3.33
388 389 1.065600 TTTCTTGTGGTGCTTGCGC 59.934 52.632 0.00 0.00 0.00 6.09
389 390 2.348605 TTTCTTGTGGTGCTTGCGCC 62.349 55.000 17.34 17.34 34.43 6.53
390 391 4.688419 CTTGTGGTGCTTGCGCCG 62.688 66.667 18.63 0.00 34.43 6.46
406 407 1.841663 GCCGCGGCGATATTTGATGT 61.842 55.000 37.24 0.00 0.00 3.06
410 411 1.195448 GCGGCGATATTTGATGTCAGG 59.805 52.381 12.98 0.00 0.00 3.86
413 414 2.031682 GGCGATATTTGATGTCAGGTGC 60.032 50.000 0.00 0.00 0.00 5.01
416 417 4.553547 GCGATATTTGATGTCAGGTGCTTC 60.554 45.833 0.00 0.00 0.00 3.86
417 418 4.571984 CGATATTTGATGTCAGGTGCTTCA 59.428 41.667 0.00 0.00 0.00 3.02
418 419 5.065090 CGATATTTGATGTCAGGTGCTTCAA 59.935 40.000 0.00 0.00 0.00 2.69
419 420 3.988379 TTTGATGTCAGGTGCTTCAAC 57.012 42.857 0.00 0.00 32.31 3.18
420 421 1.511850 TGATGTCAGGTGCTTCAACG 58.488 50.000 0.00 0.00 0.00 4.10
421 422 1.069978 TGATGTCAGGTGCTTCAACGA 59.930 47.619 0.00 0.00 0.00 3.85
425 444 0.596600 TCAGGTGCTTCAACGACGAC 60.597 55.000 0.00 0.00 0.00 4.34
446 465 1.815421 CGGCTCCAGCACGCTAATT 60.815 57.895 0.03 0.00 44.36 1.40
455 474 2.866762 CAGCACGCTAATTCTTAGGGAC 59.133 50.000 15.32 8.49 45.88 4.46
462 481 3.248602 GCTAATTCTTAGGGACACATGCG 59.751 47.826 0.00 0.00 33.80 4.73
467 486 1.131126 CTTAGGGACACATGCGCAAAG 59.869 52.381 17.11 13.51 0.00 2.77
473 492 2.543653 GGACACATGCGCAAAGACTTTT 60.544 45.455 17.11 0.00 0.00 2.27
477 496 0.387239 ATGCGCAAAGACTTTTCGGC 60.387 50.000 17.11 12.94 0.00 5.54
479 498 0.317854 GCGCAAAGACTTTTCGGCTT 60.318 50.000 19.13 0.00 0.00 4.35
481 500 2.459934 CGCAAAGACTTTTCGGCTTTT 58.540 42.857 11.50 0.00 30.00 2.27
486 505 5.685841 CAAAGACTTTTCGGCTTTTATCGA 58.314 37.500 0.00 0.00 30.00 3.59
491 510 4.083484 ACTTTTCGGCTTTTATCGACAAGG 60.083 41.667 13.55 0.00 43.32 3.61
497 516 3.335579 GCTTTTATCGACAAGGTCAGGT 58.664 45.455 0.00 0.00 32.09 4.00
504 523 2.528041 GACAAGGTCAGGTCGACTTT 57.472 50.000 16.46 1.02 44.23 2.66
518 537 4.442192 GGTCGACTTTGATAGAGGAGCAAT 60.442 45.833 16.46 0.00 32.36 3.56
519 538 4.505922 GTCGACTTTGATAGAGGAGCAATG 59.494 45.833 8.70 0.00 32.36 2.82
520 539 3.806521 CGACTTTGATAGAGGAGCAATGG 59.193 47.826 0.00 0.00 32.36 3.16
523 542 2.924757 TGATAGAGGAGCAATGGCAG 57.075 50.000 0.00 0.00 44.61 4.85
528 547 3.066190 GGAGCAATGGCAGCAGCA 61.066 61.111 2.65 0.00 44.61 4.41
529 548 2.181021 GAGCAATGGCAGCAGCAC 59.819 61.111 2.65 1.63 44.61 4.40
530 549 2.599281 AGCAATGGCAGCAGCACA 60.599 55.556 2.65 0.00 44.61 4.57
532 551 1.079405 GCAATGGCAGCAGCACATT 60.079 52.632 2.65 7.61 44.61 2.71
534 553 1.801395 GCAATGGCAGCAGCACATTAG 60.801 52.381 14.28 11.08 44.61 1.73
541 560 0.036010 AGCAGCACATTAGCGGTTCT 60.036 50.000 0.00 0.00 40.15 3.01
546 565 2.744202 AGCACATTAGCGGTTCTTTCTG 59.256 45.455 0.00 0.00 40.15 3.02
552 571 1.714794 AGCGGTTCTTTCTGACGATG 58.285 50.000 0.00 0.00 0.00 3.84
553 572 1.272490 AGCGGTTCTTTCTGACGATGA 59.728 47.619 0.00 0.00 0.00 2.92
554 573 2.093973 AGCGGTTCTTTCTGACGATGAT 60.094 45.455 0.00 0.00 0.00 2.45
555 574 3.130516 AGCGGTTCTTTCTGACGATGATA 59.869 43.478 0.00 0.00 0.00 2.15
561 580 4.998788 TCTTTCTGACGATGATAGTGGTG 58.001 43.478 0.00 0.00 0.00 4.17
569 588 2.359848 CGATGATAGTGGTGGTTCGGTA 59.640 50.000 0.00 0.00 0.00 4.02
570 589 3.181484 CGATGATAGTGGTGGTTCGGTAA 60.181 47.826 0.00 0.00 0.00 2.85
577 596 3.008594 AGTGGTGGTTCGGTAATTCATGA 59.991 43.478 0.00 0.00 0.00 3.07
578 597 3.374058 GTGGTGGTTCGGTAATTCATGAG 59.626 47.826 0.00 0.00 0.00 2.90
720 742 2.448582 TTTGGAGCGTGGACCACCT 61.449 57.895 19.11 16.02 35.81 4.00
726 748 4.003788 CGTGGACCACCTCCGCTT 62.004 66.667 19.11 0.00 46.32 4.68
787 809 3.827898 GTCCTCGAGCTCCACCCG 61.828 72.222 6.99 0.00 0.00 5.28
788 810 4.361971 TCCTCGAGCTCCACCCGT 62.362 66.667 6.99 0.00 0.00 5.28
789 811 3.827898 CCTCGAGCTCCACCCGTC 61.828 72.222 6.99 0.00 0.00 4.79
793 815 0.609957 TCGAGCTCCACCCGTCTTTA 60.610 55.000 8.47 0.00 0.00 1.85
794 816 0.458025 CGAGCTCCACCCGTCTTTAC 60.458 60.000 8.47 0.00 0.00 2.01
796 818 0.834687 AGCTCCACCCGTCTTTACCA 60.835 55.000 0.00 0.00 0.00 3.25
797 819 0.391263 GCTCCACCCGTCTTTACCAG 60.391 60.000 0.00 0.00 0.00 4.00
880 921 4.162320 GTCATCACTAATCCTCCCACTTCA 59.838 45.833 0.00 0.00 0.00 3.02
883 925 1.831736 ACTAATCCTCCCACTTCACCG 59.168 52.381 0.00 0.00 0.00 4.94
886 928 0.613777 ATCCTCCCACTTCACCGTTC 59.386 55.000 0.00 0.00 0.00 3.95
887 929 0.471211 TCCTCCCACTTCACCGTTCT 60.471 55.000 0.00 0.00 0.00 3.01
888 930 0.396811 CCTCCCACTTCACCGTTCTT 59.603 55.000 0.00 0.00 0.00 2.52
889 931 1.608283 CCTCCCACTTCACCGTTCTTC 60.608 57.143 0.00 0.00 0.00 2.87
890 932 0.395312 TCCCACTTCACCGTTCTTCC 59.605 55.000 0.00 0.00 0.00 3.46
916 958 4.678743 GCCCACCGCCCTTTTCCT 62.679 66.667 0.00 0.00 0.00 3.36
917 959 2.117423 CCCACCGCCCTTTTCCTT 59.883 61.111 0.00 0.00 0.00 3.36
919 961 1.532604 CCCACCGCCCTTTTCCTTTC 61.533 60.000 0.00 0.00 0.00 2.62
920 962 1.532604 CCACCGCCCTTTTCCTTTCC 61.533 60.000 0.00 0.00 0.00 3.13
971 1013 2.155197 AAATCCAGCCACCTCCACCC 62.155 60.000 0.00 0.00 0.00 4.61
997 1039 3.885901 TCTCTCTCTCTCTCTCTCTCTCG 59.114 52.174 0.00 0.00 0.00 4.04
1425 1479 2.435693 CGACCTGGTGGGGATCCTC 61.436 68.421 12.58 8.60 40.03 3.71
1818 1872 1.675641 CTTCAAGAACCTGCCCCGG 60.676 63.158 0.00 0.00 0.00 5.73
2010 2064 1.018148 AGTGCGACATCCTCGACTAG 58.982 55.000 0.00 0.00 46.14 2.57
2045 2099 1.856265 GCGTTGCTACAGCTTTGCCT 61.856 55.000 2.44 0.00 42.66 4.75
2048 2102 1.815003 GTTGCTACAGCTTTGCCTGAT 59.185 47.619 2.44 0.00 42.66 2.90
2080 2135 1.743394 GCTAGTCCGGTGAAAATTGGG 59.257 52.381 0.00 0.00 0.00 4.12
2105 2163 6.381801 CGATATTAGGATTGGATTTTGGTGC 58.618 40.000 0.00 0.00 0.00 5.01
2168 2253 3.896648 TGCTTTTCGGTCTTGTGAATC 57.103 42.857 0.00 0.00 0.00 2.52
2199 2284 3.089784 CGAAGGCCGTCCAATTCG 58.910 61.111 13.43 10.49 34.94 3.34
2205 2290 2.125673 CCGTCCAATTCGGCGAGT 60.126 61.111 10.46 3.76 41.48 4.18
2240 2325 1.439679 GCACCTCCCTTTCTGTTACG 58.560 55.000 0.00 0.00 0.00 3.18
2274 2359 0.036010 CGCCTGGACTGGTTCATCTT 60.036 55.000 0.00 0.00 0.00 2.40
2283 2368 0.522626 TGGTTCATCTTGTGCATGCG 59.477 50.000 14.09 0.00 0.00 4.73
2325 2422 0.846401 CATTCCGCGTAGTCATCACG 59.154 55.000 4.92 0.00 42.24 4.35
2358 2455 4.537433 GCCGCCGAATGCTCCTCT 62.537 66.667 0.00 0.00 38.05 3.69
2361 2458 2.817423 CGCCGAATGCTCCTCTTGC 61.817 63.158 0.00 0.00 38.05 4.01
2362 2459 2.817423 GCCGAATGCTCCTCTTGCG 61.817 63.158 0.00 0.00 36.87 4.85
2363 2460 2.176273 CCGAATGCTCCTCTTGCGG 61.176 63.158 0.00 0.00 0.00 5.69
2364 2461 1.448540 CGAATGCTCCTCTTGCGGT 60.449 57.895 0.00 0.00 0.00 5.68
2365 2462 1.021390 CGAATGCTCCTCTTGCGGTT 61.021 55.000 0.00 0.00 0.00 4.44
2366 2463 1.739035 CGAATGCTCCTCTTGCGGTTA 60.739 52.381 0.00 0.00 0.00 2.85
2418 2615 1.847818 GTAGCATAATCACGCGACCA 58.152 50.000 15.93 0.00 0.00 4.02
2534 2745 3.508840 GGGCGGCCGAAATCACTG 61.509 66.667 33.48 0.00 0.00 3.66
2539 2750 0.443869 CGGCCGAAATCACTGTTCTG 59.556 55.000 24.07 0.00 0.00 3.02
2541 2752 2.151202 GGCCGAAATCACTGTTCTGAA 58.849 47.619 0.00 0.00 0.00 3.02
2549 2760 7.307989 CCGAAATCACTGTTCTGAACTTAACAT 60.308 37.037 20.18 4.83 35.21 2.71
2562 2773 9.288576 TCTGAACTTAACATTGATCTTTGTCAT 57.711 29.630 0.00 0.00 0.00 3.06
2633 2844 4.884257 GATCCCGCGGCGTTGCTA 62.884 66.667 22.85 1.77 0.00 3.49
2651 2862 3.067040 TGCTACGACATATAGAAACGCCA 59.933 43.478 0.00 0.00 0.00 5.69
2653 2864 4.085210 GCTACGACATATAGAAACGCCAAC 60.085 45.833 0.00 0.00 0.00 3.77
2689 2927 4.868450 TTATCCACATTAAAACGCCGAG 57.132 40.909 0.00 0.00 0.00 4.63
2690 2928 1.444836 TCCACATTAAAACGCCGAGG 58.555 50.000 0.00 0.00 0.00 4.63
2694 2932 3.242608 CCACATTAAAACGCCGAGGTATG 60.243 47.826 0.00 0.00 0.00 2.39
2696 2934 2.096220 TTAAAACGCCGAGGTATGCA 57.904 45.000 0.00 0.00 0.00 3.96
2697 2935 2.096220 TAAAACGCCGAGGTATGCAA 57.904 45.000 0.00 0.00 0.00 4.08
2707 2945 2.930040 CGAGGTATGCAACGTTTCTGAT 59.070 45.455 0.00 0.00 0.00 2.90
2708 2946 3.000322 CGAGGTATGCAACGTTTCTGATC 60.000 47.826 0.00 0.00 0.00 2.92
2709 2947 3.270877 AGGTATGCAACGTTTCTGATCC 58.729 45.455 0.00 0.00 0.00 3.36
2710 2948 3.006940 GGTATGCAACGTTTCTGATCCA 58.993 45.455 0.00 0.00 0.00 3.41
2711 2949 3.181510 GGTATGCAACGTTTCTGATCCAC 60.182 47.826 0.00 0.00 0.00 4.02
2712 2950 1.960417 TGCAACGTTTCTGATCCACA 58.040 45.000 0.00 0.00 0.00 4.17
2713 2951 2.503331 TGCAACGTTTCTGATCCACAT 58.497 42.857 0.00 0.00 0.00 3.21
2714 2952 2.226200 TGCAACGTTTCTGATCCACATG 59.774 45.455 0.00 0.00 0.00 3.21
2715 2953 2.414559 GCAACGTTTCTGATCCACATGG 60.415 50.000 0.00 0.00 0.00 3.66
2731 2969 2.336341 TGGAAACGCCATTGGTGTC 58.664 52.632 21.62 10.52 46.56 3.67
2741 2979 0.591170 CATTGGTGTCGGCGTTTCTT 59.409 50.000 6.85 0.00 0.00 2.52
2742 2980 0.872388 ATTGGTGTCGGCGTTTCTTC 59.128 50.000 6.85 0.00 0.00 2.87
2743 2981 1.161563 TTGGTGTCGGCGTTTCTTCC 61.162 55.000 6.85 3.27 0.00 3.46
2851 3089 4.996976 TTCGTGAGAAGGAGCAGC 57.003 55.556 0.00 0.00 46.92 5.25
2865 3103 1.077501 GCAGCAGGGTAGGCATTCA 60.078 57.895 0.00 0.00 0.00 2.57
2891 3129 1.068541 TGACTTGACCTGACGATGACG 60.069 52.381 0.00 0.00 45.75 4.35
2907 3145 1.073125 TGACGATGTTTGATGGGTGGT 59.927 47.619 0.00 0.00 0.00 4.16
2911 3149 0.252193 ATGTTTGATGGGTGGTGGGG 60.252 55.000 0.00 0.00 0.00 4.96
3005 3243 1.130561 GACACCCTGCGTTAATCTTGC 59.869 52.381 0.00 0.00 0.00 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.599041 TCACATTAAGGGTTTCAGGGATG 58.401 43.478 0.00 0.00 0.00 3.51
1 2 4.946160 TCACATTAAGGGTTTCAGGGAT 57.054 40.909 0.00 0.00 0.00 3.85
2 3 4.105697 AGTTCACATTAAGGGTTTCAGGGA 59.894 41.667 0.00 0.00 0.00 4.20
3 4 4.407365 AGTTCACATTAAGGGTTTCAGGG 58.593 43.478 0.00 0.00 0.00 4.45
4 5 6.405278 AAAGTTCACATTAAGGGTTTCAGG 57.595 37.500 0.00 0.00 0.00 3.86
5 6 6.636850 CGAAAAGTTCACATTAAGGGTTTCAG 59.363 38.462 0.00 0.00 0.00 3.02
6 7 6.500041 CGAAAAGTTCACATTAAGGGTTTCA 58.500 36.000 0.00 0.00 0.00 2.69
7 8 5.401376 GCGAAAAGTTCACATTAAGGGTTTC 59.599 40.000 0.00 0.00 0.00 2.78
8 9 5.068591 AGCGAAAAGTTCACATTAAGGGTTT 59.931 36.000 0.00 0.00 0.00 3.27
9 10 4.583073 AGCGAAAAGTTCACATTAAGGGTT 59.417 37.500 0.00 0.00 0.00 4.11
10 11 4.142038 AGCGAAAAGTTCACATTAAGGGT 58.858 39.130 0.00 0.00 0.00 4.34
11 12 4.766404 AGCGAAAAGTTCACATTAAGGG 57.234 40.909 0.00 0.00 0.00 3.95
12 13 5.757886 TGAAGCGAAAAGTTCACATTAAGG 58.242 37.500 0.00 0.00 0.00 2.69
13 14 6.306356 CCATGAAGCGAAAAGTTCACATTAAG 59.694 38.462 0.00 0.00 35.55 1.85
14 15 6.016693 TCCATGAAGCGAAAAGTTCACATTAA 60.017 34.615 0.00 0.00 35.55 1.40
15 16 5.471797 TCCATGAAGCGAAAAGTTCACATTA 59.528 36.000 0.00 0.00 35.55 1.90
16 17 4.278170 TCCATGAAGCGAAAAGTTCACATT 59.722 37.500 0.00 0.00 35.55 2.71
17 18 3.820467 TCCATGAAGCGAAAAGTTCACAT 59.180 39.130 0.00 0.00 35.55 3.21
18 19 3.210227 TCCATGAAGCGAAAAGTTCACA 58.790 40.909 0.00 0.00 35.55 3.58
19 20 3.814945 CTCCATGAAGCGAAAAGTTCAC 58.185 45.455 0.00 0.00 35.55 3.18
20 21 2.226437 GCTCCATGAAGCGAAAAGTTCA 59.774 45.455 0.00 0.00 37.10 3.18
21 22 2.414691 GGCTCCATGAAGCGAAAAGTTC 60.415 50.000 0.00 0.00 43.45 3.01
22 23 1.541588 GGCTCCATGAAGCGAAAAGTT 59.458 47.619 0.00 0.00 43.45 2.66
23 24 1.168714 GGCTCCATGAAGCGAAAAGT 58.831 50.000 0.00 0.00 43.45 2.66
24 25 0.097674 CGGCTCCATGAAGCGAAAAG 59.902 55.000 0.00 0.00 43.45 2.27
25 26 1.922135 GCGGCTCCATGAAGCGAAAA 61.922 55.000 0.00 0.00 43.45 2.29
26 27 2.398554 GCGGCTCCATGAAGCGAAA 61.399 57.895 0.00 0.00 43.45 3.46
27 28 1.955495 TAGCGGCTCCATGAAGCGAA 61.955 55.000 5.39 0.00 43.45 4.70
28 29 2.423064 TAGCGGCTCCATGAAGCGA 61.423 57.895 5.39 0.00 43.45 4.93
29 30 2.106938 TAGCGGCTCCATGAAGCG 59.893 61.111 5.39 0.00 43.45 4.68
30 31 1.889573 GGTAGCGGCTCCATGAAGC 60.890 63.158 5.39 0.00 41.73 3.86
31 32 0.107456 ATGGTAGCGGCTCCATGAAG 59.893 55.000 23.95 0.00 42.07 3.02
32 33 0.106708 GATGGTAGCGGCTCCATGAA 59.893 55.000 27.37 8.11 43.45 2.57
33 34 0.760567 AGATGGTAGCGGCTCCATGA 60.761 55.000 27.37 2.36 43.45 3.07
34 35 0.320247 GAGATGGTAGCGGCTCCATG 60.320 60.000 27.37 0.00 43.45 3.66
35 36 0.470833 AGAGATGGTAGCGGCTCCAT 60.471 55.000 24.48 24.48 45.69 3.41
36 37 1.075970 AGAGATGGTAGCGGCTCCA 60.076 57.895 18.88 18.88 38.14 3.86
37 38 1.365633 CAGAGATGGTAGCGGCTCC 59.634 63.158 5.39 8.66 0.00 4.70
38 39 0.461961 AACAGAGATGGTAGCGGCTC 59.538 55.000 5.39 0.00 0.00 4.70
39 40 0.461961 GAACAGAGATGGTAGCGGCT 59.538 55.000 7.98 7.98 0.00 5.52
40 41 0.461961 AGAACAGAGATGGTAGCGGC 59.538 55.000 0.00 0.00 0.00 6.53
41 42 2.428890 AGAAGAACAGAGATGGTAGCGG 59.571 50.000 0.00 0.00 0.00 5.52
42 43 3.791973 AGAAGAACAGAGATGGTAGCG 57.208 47.619 0.00 0.00 0.00 4.26
43 44 4.109050 CGAAGAAGAACAGAGATGGTAGC 58.891 47.826 0.00 0.00 0.00 3.58
44 45 4.440802 CCCGAAGAAGAACAGAGATGGTAG 60.441 50.000 0.00 0.00 0.00 3.18
45 46 3.447586 CCCGAAGAAGAACAGAGATGGTA 59.552 47.826 0.00 0.00 0.00 3.25
46 47 2.234908 CCCGAAGAAGAACAGAGATGGT 59.765 50.000 0.00 0.00 0.00 3.55
47 48 2.497675 TCCCGAAGAAGAACAGAGATGG 59.502 50.000 0.00 0.00 0.00 3.51
48 49 3.430098 CCTCCCGAAGAAGAACAGAGATG 60.430 52.174 0.00 0.00 0.00 2.90
49 50 2.763448 CCTCCCGAAGAAGAACAGAGAT 59.237 50.000 0.00 0.00 0.00 2.75
50 51 2.171840 CCTCCCGAAGAAGAACAGAGA 58.828 52.381 0.00 0.00 0.00 3.10
51 52 1.205893 CCCTCCCGAAGAAGAACAGAG 59.794 57.143 0.00 0.00 0.00 3.35
52 53 1.267121 CCCTCCCGAAGAAGAACAGA 58.733 55.000 0.00 0.00 0.00 3.41
53 54 0.250513 CCCCTCCCGAAGAAGAACAG 59.749 60.000 0.00 0.00 0.00 3.16
54 55 0.473117 ACCCCTCCCGAAGAAGAACA 60.473 55.000 0.00 0.00 0.00 3.18
55 56 1.481363 CTACCCCTCCCGAAGAAGAAC 59.519 57.143 0.00 0.00 0.00 3.01
56 57 1.078324 ACTACCCCTCCCGAAGAAGAA 59.922 52.381 0.00 0.00 0.00 2.52
57 58 0.708802 ACTACCCCTCCCGAAGAAGA 59.291 55.000 0.00 0.00 0.00 2.87
58 59 1.112950 GACTACCCCTCCCGAAGAAG 58.887 60.000 0.00 0.00 0.00 2.85
59 60 0.708802 AGACTACCCCTCCCGAAGAA 59.291 55.000 0.00 0.00 0.00 2.52
60 61 0.033405 CAGACTACCCCTCCCGAAGA 60.033 60.000 0.00 0.00 0.00 2.87
61 62 0.033405 TCAGACTACCCCTCCCGAAG 60.033 60.000 0.00 0.00 0.00 3.79
62 63 0.410663 TTCAGACTACCCCTCCCGAA 59.589 55.000 0.00 0.00 0.00 4.30
63 64 0.033405 CTTCAGACTACCCCTCCCGA 60.033 60.000 0.00 0.00 0.00 5.14
64 65 0.033405 TCTTCAGACTACCCCTCCCG 60.033 60.000 0.00 0.00 0.00 5.14
65 66 1.832366 GTTCTTCAGACTACCCCTCCC 59.168 57.143 0.00 0.00 0.00 4.30
66 67 2.537143 TGTTCTTCAGACTACCCCTCC 58.463 52.381 0.00 0.00 0.00 4.30
67 68 3.306849 GGTTGTTCTTCAGACTACCCCTC 60.307 52.174 0.00 0.00 0.00 4.30
68 69 2.638363 GGTTGTTCTTCAGACTACCCCT 59.362 50.000 0.00 0.00 0.00 4.79
69 70 2.638363 AGGTTGTTCTTCAGACTACCCC 59.362 50.000 4.64 0.00 0.00 4.95
70 71 3.614390 CGAGGTTGTTCTTCAGACTACCC 60.614 52.174 4.64 0.00 0.00 3.69
71 72 3.255149 TCGAGGTTGTTCTTCAGACTACC 59.745 47.826 0.00 0.00 0.00 3.18
72 73 4.477780 CTCGAGGTTGTTCTTCAGACTAC 58.522 47.826 3.91 0.00 0.00 2.73
73 74 3.506455 CCTCGAGGTTGTTCTTCAGACTA 59.494 47.826 24.04 0.00 0.00 2.59
74 75 2.297597 CCTCGAGGTTGTTCTTCAGACT 59.702 50.000 24.04 0.00 0.00 3.24
75 76 2.610727 CCCTCGAGGTTGTTCTTCAGAC 60.611 54.545 29.25 0.00 0.00 3.51
76 77 1.618837 CCCTCGAGGTTGTTCTTCAGA 59.381 52.381 29.25 0.00 0.00 3.27
77 78 1.618837 TCCCTCGAGGTTGTTCTTCAG 59.381 52.381 29.25 10.46 36.75 3.02
78 79 1.618837 CTCCCTCGAGGTTGTTCTTCA 59.381 52.381 29.25 1.55 36.75 3.02
79 80 2.371910 CTCCCTCGAGGTTGTTCTTC 57.628 55.000 29.25 0.00 36.75 2.87
89 90 0.912486 ACAAATTCCCCTCCCTCGAG 59.088 55.000 5.13 5.13 35.72 4.04
90 91 1.004277 CAACAAATTCCCCTCCCTCGA 59.996 52.381 0.00 0.00 0.00 4.04
91 92 1.463674 CAACAAATTCCCCTCCCTCG 58.536 55.000 0.00 0.00 0.00 4.63
92 93 1.186200 GCAACAAATTCCCCTCCCTC 58.814 55.000 0.00 0.00 0.00 4.30
93 94 0.252239 GGCAACAAATTCCCCTCCCT 60.252 55.000 0.00 0.00 0.00 4.20
94 95 2.286826 GGCAACAAATTCCCCTCCC 58.713 57.895 0.00 0.00 0.00 4.30
117 118 3.924114 TGGAGAAGAGGTTGTTGACAA 57.076 42.857 0.00 0.00 0.00 3.18
118 119 3.390967 TGATGGAGAAGAGGTTGTTGACA 59.609 43.478 0.00 0.00 0.00 3.58
119 120 4.008074 TGATGGAGAAGAGGTTGTTGAC 57.992 45.455 0.00 0.00 0.00 3.18
120 121 4.286808 TGATGATGGAGAAGAGGTTGTTGA 59.713 41.667 0.00 0.00 0.00 3.18
121 122 4.582869 TGATGATGGAGAAGAGGTTGTTG 58.417 43.478 0.00 0.00 0.00 3.33
122 123 4.916041 TGATGATGGAGAAGAGGTTGTT 57.084 40.909 0.00 0.00 0.00 2.83
123 124 4.472470 TCATGATGATGGAGAAGAGGTTGT 59.528 41.667 0.00 0.00 0.00 3.32
124 125 5.032327 TCATGATGATGGAGAAGAGGTTG 57.968 43.478 0.00 0.00 0.00 3.77
125 126 5.908562 ATCATGATGATGGAGAAGAGGTT 57.091 39.130 7.59 0.00 35.43 3.50
126 127 7.571071 AATATCATGATGATGGAGAAGAGGT 57.429 36.000 18.72 0.00 37.70 3.85
127 128 7.553402 GGAAATATCATGATGATGGAGAAGAGG 59.447 40.741 18.72 0.00 37.70 3.69
128 129 8.101419 TGGAAATATCATGATGATGGAGAAGAG 58.899 37.037 18.72 0.00 37.70 2.85
129 130 7.881751 GTGGAAATATCATGATGATGGAGAAGA 59.118 37.037 18.72 0.00 37.70 2.87
130 131 7.883833 AGTGGAAATATCATGATGATGGAGAAG 59.116 37.037 18.72 0.00 37.70 2.85
131 132 7.752638 AGTGGAAATATCATGATGATGGAGAA 58.247 34.615 18.72 0.00 37.70 2.87
132 133 7.016858 TGAGTGGAAATATCATGATGATGGAGA 59.983 37.037 18.72 0.00 37.70 3.71
133 134 7.119407 GTGAGTGGAAATATCATGATGATGGAG 59.881 40.741 18.72 0.00 37.70 3.86
134 135 6.938596 GTGAGTGGAAATATCATGATGATGGA 59.061 38.462 18.72 0.00 37.70 3.41
135 136 6.128363 CGTGAGTGGAAATATCATGATGATGG 60.128 42.308 18.72 0.00 37.70 3.51
136 137 6.426025 ACGTGAGTGGAAATATCATGATGATG 59.574 38.462 18.72 0.00 46.97 3.07
137 138 6.528321 ACGTGAGTGGAAATATCATGATGAT 58.472 36.000 18.72 13.10 46.97 2.45
138 139 5.917462 ACGTGAGTGGAAATATCATGATGA 58.083 37.500 18.72 0.00 46.97 2.92
156 157 4.345859 AGGGAAAATTACTCACACGTGA 57.654 40.909 25.01 0.00 38.06 4.35
157 158 4.630069 CCTAGGGAAAATTACTCACACGTG 59.370 45.833 15.48 15.48 0.00 4.49
158 159 4.828829 CCTAGGGAAAATTACTCACACGT 58.171 43.478 0.00 0.00 0.00 4.49
159 160 3.621715 GCCTAGGGAAAATTACTCACACG 59.378 47.826 11.72 0.00 0.00 4.49
160 161 4.585879 TGCCTAGGGAAAATTACTCACAC 58.414 43.478 11.72 0.00 0.00 3.82
161 162 4.919774 TGCCTAGGGAAAATTACTCACA 57.080 40.909 11.72 0.00 0.00 3.58
162 163 7.224297 TCATATGCCTAGGGAAAATTACTCAC 58.776 38.462 7.22 0.00 0.00 3.51
163 164 7.072454 ACTCATATGCCTAGGGAAAATTACTCA 59.928 37.037 7.22 0.00 0.00 3.41
164 165 7.454225 ACTCATATGCCTAGGGAAAATTACTC 58.546 38.462 7.22 0.00 0.00 2.59
165 166 7.394144 ACTCATATGCCTAGGGAAAATTACT 57.606 36.000 7.22 0.00 0.00 2.24
166 167 8.376270 ACTACTCATATGCCTAGGGAAAATTAC 58.624 37.037 7.22 0.00 0.00 1.89
167 168 8.506196 ACTACTCATATGCCTAGGGAAAATTA 57.494 34.615 7.22 0.00 0.00 1.40
168 169 7.394144 ACTACTCATATGCCTAGGGAAAATT 57.606 36.000 7.22 0.00 0.00 1.82
169 170 7.394144 AACTACTCATATGCCTAGGGAAAAT 57.606 36.000 7.22 0.89 0.00 1.82
170 171 6.824958 AACTACTCATATGCCTAGGGAAAA 57.175 37.500 7.22 0.00 0.00 2.29
171 172 6.824958 AAACTACTCATATGCCTAGGGAAA 57.175 37.500 7.22 0.00 0.00 3.13
172 173 6.497259 CCTAAACTACTCATATGCCTAGGGAA 59.503 42.308 7.22 0.00 0.00 3.97
173 174 6.017192 CCTAAACTACTCATATGCCTAGGGA 58.983 44.000 11.72 8.58 0.00 4.20
174 175 5.780793 ACCTAAACTACTCATATGCCTAGGG 59.219 44.000 11.72 0.00 0.00 3.53
175 176 6.493802 TGACCTAAACTACTCATATGCCTAGG 59.506 42.308 3.67 3.67 0.00 3.02
176 177 7.448777 TCTGACCTAAACTACTCATATGCCTAG 59.551 40.741 0.00 1.75 0.00 3.02
177 178 7.295340 TCTGACCTAAACTACTCATATGCCTA 58.705 38.462 0.00 0.00 0.00 3.93
178 179 6.136857 TCTGACCTAAACTACTCATATGCCT 58.863 40.000 0.00 0.00 0.00 4.75
179 180 6.041069 ACTCTGACCTAAACTACTCATATGCC 59.959 42.308 0.00 0.00 0.00 4.40
180 181 7.045126 ACTCTGACCTAAACTACTCATATGC 57.955 40.000 0.00 0.00 0.00 3.14
181 182 9.877178 AAAACTCTGACCTAAACTACTCATATG 57.123 33.333 0.00 0.00 0.00 1.78
220 221 0.322098 ATCCGTCCCATCGCAAAACA 60.322 50.000 0.00 0.00 0.00 2.83
223 224 1.451207 CCATCCGTCCCATCGCAAA 60.451 57.895 0.00 0.00 0.00 3.68
224 225 2.189257 CCATCCGTCCCATCGCAA 59.811 61.111 0.00 0.00 0.00 4.85
225 226 4.545706 GCCATCCGTCCCATCGCA 62.546 66.667 0.00 0.00 0.00 5.10
229 230 4.221422 CGTCGCCATCCGTCCCAT 62.221 66.667 0.00 0.00 38.35 4.00
234 235 4.446413 GGAACCGTCGCCATCCGT 62.446 66.667 0.00 0.00 38.35 4.69
246 247 2.185608 GCAGCTCGAGGAGGAACC 59.814 66.667 15.58 0.00 39.35 3.62
247 248 1.140804 GAGCAGCTCGAGGAGGAAC 59.859 63.158 15.58 0.00 0.00 3.62
251 252 0.525242 CGAAAGAGCAGCTCGAGGAG 60.525 60.000 16.99 5.29 35.36 3.69
254 255 1.518133 CCCGAAAGAGCAGCTCGAG 60.518 63.158 16.99 8.45 35.36 4.04
260 261 2.162408 GGATTGAAACCCGAAAGAGCAG 59.838 50.000 0.00 0.00 0.00 4.24
269 270 0.535335 TCGAGGAGGATTGAAACCCG 59.465 55.000 0.00 0.00 0.00 5.28
290 291 1.126846 GACTTCATGCAAACGGACGAG 59.873 52.381 0.00 0.00 0.00 4.18
296 297 0.865111 TCACCGACTTCATGCAAACG 59.135 50.000 0.00 0.00 0.00 3.60
299 300 0.874390 GCTTCACCGACTTCATGCAA 59.126 50.000 0.00 0.00 0.00 4.08
302 303 1.363744 GGAGCTTCACCGACTTCATG 58.636 55.000 0.00 0.00 0.00 3.07
313 314 4.097437 ACATAAATCTACGTCGGAGCTTCA 59.903 41.667 0.00 0.00 0.00 3.02
314 315 4.608951 ACATAAATCTACGTCGGAGCTTC 58.391 43.478 0.00 0.00 0.00 3.86
315 316 4.338682 AGACATAAATCTACGTCGGAGCTT 59.661 41.667 0.00 0.00 33.56 3.74
321 322 3.702330 TGGCAGACATAAATCTACGTCG 58.298 45.455 0.00 0.00 33.56 5.12
332 333 1.770658 CCCAAGGAGATGGCAGACATA 59.229 52.381 0.00 0.00 40.72 2.29
336 337 4.917476 TCCCAAGGAGATGGCAGA 57.083 55.556 0.00 0.00 39.26 4.26
359 360 1.549265 CCACAAGAAACCCTAACCCCC 60.549 57.143 0.00 0.00 0.00 5.40
360 361 1.146359 ACCACAAGAAACCCTAACCCC 59.854 52.381 0.00 0.00 0.00 4.95
361 362 2.235891 CACCACAAGAAACCCTAACCC 58.764 52.381 0.00 0.00 0.00 4.11
362 363 1.611977 GCACCACAAGAAACCCTAACC 59.388 52.381 0.00 0.00 0.00 2.85
388 389 0.163788 GACATCAAATATCGCCGCGG 59.836 55.000 24.05 24.05 0.00 6.46
389 390 0.858583 TGACATCAAATATCGCCGCG 59.141 50.000 6.39 6.39 0.00 6.46
390 391 1.195448 CCTGACATCAAATATCGCCGC 59.805 52.381 0.00 0.00 0.00 6.53
392 393 2.031682 GCACCTGACATCAAATATCGCC 60.032 50.000 0.00 0.00 0.00 5.54
394 395 4.571984 TGAAGCACCTGACATCAAATATCG 59.428 41.667 0.00 0.00 0.00 2.92
397 398 4.154015 CGTTGAAGCACCTGACATCAAATA 59.846 41.667 0.00 0.00 32.36 1.40
403 404 1.512926 GTCGTTGAAGCACCTGACAT 58.487 50.000 0.00 0.00 0.00 3.06
406 407 0.596600 GTCGTCGTTGAAGCACCTGA 60.597 55.000 0.00 0.00 0.00 3.86
410 411 1.201825 GCAGTCGTCGTTGAAGCAC 59.798 57.895 0.00 0.00 0.00 4.40
413 414 3.000080 GCCGCAGTCGTCGTTGAAG 62.000 63.158 0.00 0.00 0.00 3.02
416 417 3.470567 GAGCCGCAGTCGTCGTTG 61.471 66.667 0.00 0.00 0.00 4.10
417 418 4.719369 GGAGCCGCAGTCGTCGTT 62.719 66.667 0.00 0.00 0.00 3.85
442 461 3.202906 GCGCATGTGTCCCTAAGAATTA 58.797 45.455 0.30 0.00 0.00 1.40
443 462 2.017049 GCGCATGTGTCCCTAAGAATT 58.983 47.619 0.30 0.00 0.00 2.17
446 465 0.323302 TTGCGCATGTGTCCCTAAGA 59.677 50.000 12.75 0.00 0.00 2.10
455 474 1.710249 CGAAAAGTCTTTGCGCATGTG 59.290 47.619 12.75 4.51 0.00 3.21
462 481 4.320953 CGATAAAAGCCGAAAAGTCTTTGC 59.679 41.667 0.00 0.00 31.21 3.68
467 486 4.657075 TGTCGATAAAAGCCGAAAAGTC 57.343 40.909 0.00 0.00 36.50 3.01
473 492 2.028839 TGACCTTGTCGATAAAAGCCGA 60.029 45.455 0.00 0.00 34.95 5.54
497 516 4.442052 CCATTGCTCCTCTATCAAAGTCGA 60.442 45.833 0.00 0.00 0.00 4.20
499 518 3.563390 GCCATTGCTCCTCTATCAAAGTC 59.437 47.826 0.00 0.00 33.53 3.01
504 523 1.202734 GCTGCCATTGCTCCTCTATCA 60.203 52.381 0.00 0.00 38.71 2.15
518 537 2.400962 CGCTAATGTGCTGCTGCCA 61.401 57.895 13.47 10.74 38.71 4.92
519 538 2.406401 CGCTAATGTGCTGCTGCC 59.594 61.111 13.47 5.20 38.71 4.85
520 539 1.926511 AACCGCTAATGTGCTGCTGC 61.927 55.000 8.89 8.89 40.20 5.25
523 542 0.804989 AAGAACCGCTAATGTGCTGC 59.195 50.000 0.00 0.00 0.00 5.25
528 547 2.993899 CGTCAGAAAGAACCGCTAATGT 59.006 45.455 0.00 0.00 0.00 2.71
529 548 3.250744 TCGTCAGAAAGAACCGCTAATG 58.749 45.455 0.00 0.00 0.00 1.90
530 549 3.587797 TCGTCAGAAAGAACCGCTAAT 57.412 42.857 0.00 0.00 0.00 1.73
532 551 2.490509 TCATCGTCAGAAAGAACCGCTA 59.509 45.455 0.00 0.00 0.00 4.26
534 553 1.710013 TCATCGTCAGAAAGAACCGC 58.290 50.000 0.00 0.00 0.00 5.68
541 560 3.513912 ACCACCACTATCATCGTCAGAAA 59.486 43.478 0.00 0.00 0.00 2.52
546 565 2.460918 CGAACCACCACTATCATCGTC 58.539 52.381 0.00 0.00 0.00 4.20
552 571 4.761975 TGAATTACCGAACCACCACTATC 58.238 43.478 0.00 0.00 0.00 2.08
553 572 4.829872 TGAATTACCGAACCACCACTAT 57.170 40.909 0.00 0.00 0.00 2.12
554 573 4.223255 TCATGAATTACCGAACCACCACTA 59.777 41.667 0.00 0.00 0.00 2.74
555 574 3.008594 TCATGAATTACCGAACCACCACT 59.991 43.478 0.00 0.00 0.00 4.00
696 718 1.301716 TCCACGCTCCAAACTCTGC 60.302 57.895 0.00 0.00 0.00 4.26
720 742 3.777478 CGGTGAGTTCTTTATAAGCGGA 58.223 45.455 0.00 0.00 0.00 5.54
725 747 3.598019 ACCGCGGTGAGTTCTTTATAA 57.402 42.857 33.75 0.00 0.00 0.98
726 748 3.255725 CAACCGCGGTGAGTTCTTTATA 58.744 45.455 34.95 0.00 0.00 0.98
787 809 0.035343 GTGGCCTCCCTGGTAAAGAC 60.035 60.000 3.32 0.00 38.35 3.01
788 810 1.205460 GGTGGCCTCCCTGGTAAAGA 61.205 60.000 13.20 0.00 38.35 2.52
789 811 1.303282 GGTGGCCTCCCTGGTAAAG 59.697 63.158 13.20 0.00 38.35 1.85
880 921 0.977395 CTGGAGAAGGGAAGAACGGT 59.023 55.000 0.00 0.00 0.00 4.83
883 925 0.034960 GGGCTGGAGAAGGGAAGAAC 60.035 60.000 0.00 0.00 0.00 3.01
886 928 1.301293 GTGGGCTGGAGAAGGGAAG 59.699 63.158 0.00 0.00 0.00 3.46
887 929 2.231380 GGTGGGCTGGAGAAGGGAA 61.231 63.158 0.00 0.00 0.00 3.97
888 930 2.610859 GGTGGGCTGGAGAAGGGA 60.611 66.667 0.00 0.00 0.00 4.20
889 931 4.101448 CGGTGGGCTGGAGAAGGG 62.101 72.222 0.00 0.00 0.00 3.95
890 932 4.785453 GCGGTGGGCTGGAGAAGG 62.785 72.222 0.00 0.00 39.11 3.46
916 958 0.999712 GAGATTGGGGTGAGGGGAAA 59.000 55.000 0.00 0.00 0.00 3.13
917 959 0.919289 GGAGATTGGGGTGAGGGGAA 60.919 60.000 0.00 0.00 0.00 3.97
919 961 2.746375 CGGAGATTGGGGTGAGGGG 61.746 68.421 0.00 0.00 0.00 4.79
920 962 1.972660 GACGGAGATTGGGGTGAGGG 61.973 65.000 0.00 0.00 0.00 4.30
971 1013 4.222336 AGAGAGAGAGAGAGAGAGAGAGG 58.778 52.174 0.00 0.00 0.00 3.69
997 1039 2.109126 GGAGAAGCGTGCCCATGTC 61.109 63.158 0.00 0.00 0.00 3.06
1124 1178 2.180862 TCCGAGACGATCTGCTCCG 61.181 63.158 0.00 0.00 0.00 4.63
1785 1839 2.896243 TGAAGTAGAGCTCGTCGAAC 57.104 50.000 8.37 3.28 0.00 3.95
1932 1986 2.758089 GGTGCCGAGCTTCTGCATG 61.758 63.158 8.67 0.00 38.78 4.06
2037 2091 0.668401 GGCACAACATCAGGCAAAGC 60.668 55.000 0.00 0.00 0.00 3.51
2045 2099 0.735978 CTAGCGACGGCACAACATCA 60.736 55.000 0.00 0.00 43.41 3.07
2048 2102 1.372499 GACTAGCGACGGCACAACA 60.372 57.895 0.00 0.00 43.41 3.33
2080 2135 6.381801 CACCAAAATCCAATCCTAATATCGC 58.618 40.000 0.00 0.00 0.00 4.58
2105 2163 1.656095 GAAAATCAGAGAGCGGACACG 59.344 52.381 0.00 0.00 44.63 4.49
2117 2175 6.471976 TCACGAGTTCATTCAGAAAATCAG 57.528 37.500 0.00 0.00 38.13 2.90
2168 2253 1.055839 CTTCGTCGCTCGCTTTTCG 59.944 57.895 0.00 0.00 39.67 3.46
2183 2268 3.497879 CCGAATTGGACGGCCTTC 58.502 61.111 9.82 3.53 43.74 3.46
2240 2325 1.629504 GGCGACGATAACGACTTGC 59.370 57.895 0.00 0.00 42.66 4.01
2274 2359 2.356069 TGAAAGTAACAACGCATGCACA 59.644 40.909 19.57 0.00 0.00 4.57
2325 2422 2.202479 GCGGCAATTGAGCGTTCC 60.202 61.111 10.34 0.00 34.64 3.62
2361 2458 1.126079 CGGTAGCTGCGTAATAACCG 58.874 55.000 6.08 6.08 43.20 4.44
2362 2459 1.494824 CCGGTAGCTGCGTAATAACC 58.505 55.000 0.00 0.00 0.00 2.85
2363 2460 0.857287 GCCGGTAGCTGCGTAATAAC 59.143 55.000 1.90 0.00 38.99 1.89
2364 2461 0.595567 CGCCGGTAGCTGCGTAATAA 60.596 55.000 20.54 0.00 45.43 1.40
2365 2462 1.008194 CGCCGGTAGCTGCGTAATA 60.008 57.895 20.54 0.00 45.43 0.98
2366 2463 2.279252 CGCCGGTAGCTGCGTAAT 60.279 61.111 20.54 0.00 45.43 1.89
2392 2589 2.456989 CGTGATTATGCTACGTTCCGT 58.543 47.619 0.00 0.00 44.35 4.69
2394 2591 1.189446 CGCGTGATTATGCTACGTTCC 59.811 52.381 0.00 0.00 39.79 3.62
2395 2592 2.098021 GTCGCGTGATTATGCTACGTTC 60.098 50.000 5.77 0.00 39.79 3.95
2400 2597 2.198406 GTTGGTCGCGTGATTATGCTA 58.802 47.619 5.77 0.00 36.66 3.49
2404 2601 1.426041 GCCGTTGGTCGCGTGATTAT 61.426 55.000 5.77 0.00 38.35 1.28
2407 2604 4.673298 TGCCGTTGGTCGCGTGAT 62.673 61.111 5.77 0.00 38.35 3.06
2418 2615 1.153329 TGTCACCTTCGTTGCCGTT 60.153 52.632 0.00 0.00 35.01 4.44
2532 2743 9.390795 CAAAGATCAATGTTAAGTTCAGAACAG 57.609 33.333 15.85 0.00 38.86 3.16
2534 2745 9.387123 GACAAAGATCAATGTTAAGTTCAGAAC 57.613 33.333 5.00 5.00 0.00 3.01
2576 2787 9.753674 AGGGTCAGATCATGAAATACTTTTAAA 57.246 29.630 0.00 0.00 40.43 1.52
2579 2790 8.655935 AAAGGGTCAGATCATGAAATACTTTT 57.344 30.769 0.00 0.00 40.43 2.27
2591 2802 4.000988 GCGTTTCTAAAAGGGTCAGATCA 58.999 43.478 0.00 0.00 0.00 2.92
2633 2844 2.855963 CGTTGGCGTTTCTATATGTCGT 59.144 45.455 0.00 0.00 0.00 4.34
2667 2878 4.095185 CCTCGGCGTTTTAATGTGGATAAA 59.905 41.667 6.85 0.00 0.00 1.40
2669 2880 3.199677 CCTCGGCGTTTTAATGTGGATA 58.800 45.455 6.85 0.00 0.00 2.59
2670 2881 2.014128 CCTCGGCGTTTTAATGTGGAT 58.986 47.619 6.85 0.00 0.00 3.41
2671 2882 1.270947 ACCTCGGCGTTTTAATGTGGA 60.271 47.619 6.85 0.00 0.00 4.02
2672 2883 1.161843 ACCTCGGCGTTTTAATGTGG 58.838 50.000 6.85 0.00 0.00 4.17
2676 2887 2.634600 TGCATACCTCGGCGTTTTAAT 58.365 42.857 6.85 0.00 0.00 1.40
2689 2927 3.006940 TGGATCAGAAACGTTGCATACC 58.993 45.455 9.44 6.92 0.00 2.73
2690 2928 3.435327 TGTGGATCAGAAACGTTGCATAC 59.565 43.478 9.44 0.00 0.00 2.39
2694 2932 2.414559 CCATGTGGATCAGAAACGTTGC 60.415 50.000 0.00 0.00 37.39 4.17
2696 2934 3.417069 TCCATGTGGATCAGAAACGTT 57.583 42.857 0.00 0.00 39.78 3.99
2697 2935 3.417069 TTCCATGTGGATCAGAAACGT 57.583 42.857 1.98 0.00 44.98 3.99
2725 2963 1.595929 GGAAGAAACGCCGACACCA 60.596 57.895 0.00 0.00 0.00 4.17
2726 2964 1.301479 AGGAAGAAACGCCGACACC 60.301 57.895 0.00 0.00 0.00 4.16
2728 2966 0.599204 GTCAGGAAGAAACGCCGACA 60.599 55.000 0.00 0.00 32.14 4.35
2729 2967 0.599204 TGTCAGGAAGAAACGCCGAC 60.599 55.000 0.00 0.00 0.00 4.79
2731 2969 0.443869 CATGTCAGGAAGAAACGCCG 59.556 55.000 0.00 0.00 0.00 6.46
2741 2979 1.757949 TGGCGTTTCCATGTCAGGA 59.242 52.632 0.00 0.00 40.72 3.86
2742 2980 4.395519 TGGCGTTTCCATGTCAGG 57.604 55.556 0.00 0.00 40.72 3.86
2766 3004 4.084888 GTACGCCAGCAACGCCAC 62.085 66.667 0.00 0.00 0.00 5.01
2798 3036 0.947244 CCCTTCGCATAGTTGGCATC 59.053 55.000 0.00 0.00 0.00 3.91
2799 3037 0.466189 CCCCTTCGCATAGTTGGCAT 60.466 55.000 0.00 0.00 0.00 4.40
2851 3089 3.826157 TCACTTTTTGAATGCCTACCCTG 59.174 43.478 0.00 0.00 0.00 4.45
2865 3103 3.869065 TCGTCAGGTCAAGTCACTTTTT 58.131 40.909 0.00 0.00 0.00 1.94
2891 3129 1.185315 CCCACCACCCATCAAACATC 58.815 55.000 0.00 0.00 0.00 3.06
2907 3145 2.037527 TGCATGCAATCTGCCCCA 59.962 55.556 20.30 0.00 44.23 4.96
2980 3218 2.264005 TTAACGCAGGGTGTCAACAT 57.736 45.000 0.00 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.