>input_sequence_63154
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-------------ATGGGCACGCTTCTCCGCCGCGTCCTCCTCTCCCTCGCGCTCCTCGCCGCCGCCGCGGCCCCCGGCG
CGGCGGCGGCGGCGGCCAGGCTGTCGACGTCGTACTACAGCCGCAGCTGCCCCCGCGCGGAGCAGATCGTCTCGGACGTG
GTCGCCGCCAAGCAGCAGGCCAACCCGTCCACGGCGGCGGGCACGCTGCGCCTCTTCTTCCACGACTGCTTCGTCTCCGG
CTGCGACGCCTCCGTCCTCGTCTCCCCGCTCTCCTCCGACCGGACCCCGGAGCGCGCCGCGGAGATCAACCTCTCCCTCC
CGGGGGACGCCTTCGACGCCGTGGCCCGCGCCAAGGCCGCGCTGGAGGCCGCCTGCCCGGGCACCGTCTCCTGCGCCGAC
ATCCTCGCGCTGGCCGCGCGCGACCTGGTGGGGATCCTCGGCGGGCCGCGCTTCCCCGTCCCCCTCGGCCGCCGCGACGC
GCGCCGCTCCGACGCGCGCGACGTGGAGGGCAACCTCCCGCGCACCAACATGTCGGCGCGCGCCATGACGGTCCTGTTCG
CGCGCAAGGGCATCACGCCGCAGGAGATGGTGGCGCTGGCGGGCGCCCACACCGTGGGCTTCTCCCACTGCTCCGAGTTC
GCGCACCGGGTGTACAACTACAAGGGCAAGGGCGGCGGCGCCAGCGGGCACGACCCGTCGCTGAACCCGGAGTTCGCGCG
GGCGCTGCAGAGCTCCTGCGCCGGCTACGAGAGCAACCCGGACATCTCCATCTTCAACGACATCGTGACGCCGCGGGAGT
TCGACGAGCTCTACTTCAAGAACCTGCCCCGGGGCCTGGGGCTGCTCGCCTCCGACGCCGCGCTGTGGGAGTACCCGCCC
ACCAAGGTGTTCGTCCAGCAGTACGCCGACAACCGGACCGCCTTCTTCCAGGACTTCGCCAAGGCCATGCAGAAGCTCGG
CACCGTCGGCGTCAAGACGGGGCGGCAGGGCGTCGTCAGGCGGCAGTGCGACATCCTCGACTAG----------------
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>chr2A_1_TraesCS2A01G333500
CATCCCTGAAACCCTTAATGTGAACTTTTCGCTTCATGGAGCCGCTACCATCTCTGTTCTTCTTCGGGAGGGGTAGTCTG
AAGAACAACCTCGAGGGAGGGGAATTTGTTGCCATCGTTGTCAACAACCTCTTCTCCATCATCATGATATTTCCACTCAC
GTGTGAGTAATTTTCCCTAGGCATATGAGTAGTTTAGGTCAGAGTTTTTTAGTCATCACATGTTTTGCGATGGGACGGAT
GGCGACGGTTCCTCCTCGAGCTGCTCTTTCGGGTTTCAATCCTCCTCGAGCTCGTCCGTTTGCATGAAGTCGGTGAAGCT
CCGACGTAGATTTATGTCTGCCATCTCCTTGGGAGGGAGGGGGGTTAGGGTTTCTTGTGGTGCTTGCGCCGCGGCGATAT
TTGATGTCAGGTGCTTCAACGAC------------------GACTGCGGCTCCAGCACGCTAATTCTTAGGGACACATGC
GCAAAGACTTTTCGGCTTTTATCGACAAGGTCAGGTCGACTTTGATAGAGGAGCAATGGCAGCAGCACATTAGCGGTTCT
TTCTGACGATGATAGTGGTGGTTCGGTAATTCATGAGTAATTTTTATTACATTTGAAGTGTTTTGTATACTTTTGATGAT
TTTTCTTAATGAATATGTGTCCTTTTCCTAAAAAAAG---TCATGTTTATATATTCGAAGAAAAAACAAAATCCACTGCA
GAGTTTGGAGCGTGGACCACCTCCGCTTATAAAGAACTCACCGCGGTTGCGGCAGGAACATCCGTCCATCCGTCCTCGAG
CTCCACCCGTCTTTACCAGGGA--------GGCCACCGCACCACCCTTCCCCTTAACCTTAAACCCCACAATTACTTCAC
TCATCAGTCATCACTAA-----------TCCTCCCACTTCA-CCGTTCTTCCCTTCTCCAGCCCACCGCCCTTTTCCTTT
CCCCTCACCCCAATCTCCGTCTCTCTCATTTCCAAATCCAGCCACCTCCACCCCTCTCTCTCTCTCTCTCTCTCTCTCG-
-----------ACATGGGCACGCTTCTCCGCCGCGTCCTCCTCTCCCTCGCGCTCCTCGCCGCCGCCGCGGCCCCCGGCG
CGGCGGCGGCGGCGGCCAGGCTGTCGACGTCGTACTACAGCCGCAGCTGCCCCCGCGCGGAGCAGATCGTCTCGGACGTG
GTCGCCGCCAAGCAGCAGGCCAACCCGTCCACGGCGGCGGGCACGCTGCGCCTCTTCTTCCACGACTGCTTCGTCTCCGG
CTGCGACGCCTCCGTCCTCGTCTCCCCGCTCTCCTCCGACCGGACCCCGGAGCGCGCCGCGGAGATCAACCTCTCCCTCC
CGGGGGACGCCTTCGACGCCGTGGCCCGCGCCAAGGCCGCGCTGGAGGCCGCCTGCCCGGGCACCGTCTCCTGCGCCGAC
ATCCTCGCGCTGGCCGCGCGCGACCTGGTGGGGATCCTCGGCGGGCCGCGCTTCCCCGTCCCCCTCGGCCGCCGCGACGC
GCGCCGCTCCGACGCGCGCGACGTGGAGGGCAACCTCCCGCGCACCAACATGTCGGCGCGCGCCATGACGGTCCTGTTCG
CGCGCAAGGGCATCACGCCGCAGGAGATGGTGGCGCTGGCGGGCGCCCACACCGTGGGCTTCTCCCACTGCTCCGAGTTC
GCGCACCGGGTGTACAACTACAAGGGCAAGGGCGGCGGCGCCAGCGGGCACGACCCGTCGCTGAACCCGGAGTTCGCGCG
GGCGCTGCAGAGCTCCTGCGCCGGCTACGAGAGCAACCCGGACATCTCCATCTTCAACGACATCGTGACGCCGCGGGAGT
TCGACGAGCTCTACTTCAAGAACCTGCCCCGGGGCCTGGGGCTGCTCGCCTCCGACGCCGCGCTGTGGGAGTACCCGCCC
ACCAAGGTGTTCGTCCAGCAGTACGCCGACAACCGGACCGCCTTCTTCCAGGACTTCGCCAAGGCCATGCAGAAGCTCGG
CACCGTCGGCGTCAAGACGGGGCGGCAGGGCGTCGTCAGGCGGCAGTGCGACATCCTCGACTAGGTCCGGCGACCGCGCG
CGTTGCTACAGCTTTGCCTGATGTTGTGCCGTCGC-TAGTCCGGTGAAAATTGGGCGA---TATTAGGATTGGATTTTGG
TGCGTGTCCGCTCTCTGATTTTCTGAATGAACTCGTGAATTGT---------------------------GATGCTTTTC
GGTCTTGTGAATCGAAAAGCGAGCGACGAAGGCCGTCCAATTCGGCGAGTGGCGCTGGGCCGTTGGCACCTCCCTTTCTG
TTACGCAAGTCGTTATCGTCGCCTGGACTGGTTCATCTTGTGCATGCG-TTGTTACTTTCAGTCATA-----------CA
TACATTCCGCGTAGTCATCACGGAACGCTCAATTGCCGCCGCCGAATGCTCCTCTTGCGGTTATTACGCAGCTACCG---
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-----------------GCGGCGGATACACGGAACGTAGCATAATCACGCGACCAACGGCAACGAAGGTGACACGAGCAG
ATTGCCGGCCGTTGGGG--------------TTGGCACATGGGAGGGCAAGGCAACATTGGCTGCTGCCTTTTTCTTGTA
CAGCGCCGGGCGGCCGAAATCACTGTTCTGAACTTAACATTGATCTTTGTCATAAAATAAACTCGATTTAAAAGTATTTC
ATGATCTGACCCTTTTAGAAACGCCAGATCCCGCGGCGTTGCTACGACATATAGAAACGCCAACGTATGCTGCGTTTTTT
ATCCACATTA---------------------------AAACGCCGAGGTATGCAACGTTTCTGATCCACATGGAAACGCC
ATTGGTGTCGGCGTTTCTTCCTGACATGGAAACGCCATAGGTGGTGGCGTTGCTGGCGTACATGGTTGGAACAACGATGC
CAACTATGCGAAGGGGTACACATGGACATGGTTCGTGAGAAGGAGCAGCAGGGTAGGCATTCAAAAAGTGACTTGACCTG
ACGATGACGATGTTTGATGGGTGGTGGGGCAGATTGCATGCAGCAACTTTTGTCTAATGACATACTGCCACTGTAGCAAC
ATGCACAGTGCGATGTGATGTTGACACCCTGCGTTAATCTTGCAGGTA
>chr2D_188
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---------------------------AGTAGTTTAGGTTAGT-TTTTTTAGTCATCACAGGTGCAACGCTCGGCCGGAT
GGCGACACTTCTTCTTCGAGTTGCTCTTTTGGGTTTCAATCCTCCTCGAGTTCGTCTGTCTGGATGGAGTGGGCACAGCT
CTGACGTAGATTCATGCA----ATCTCCTTGGGGTGACGAA--GTTAGGGTTTCTTGTTGTGCTTGCGTGACAGTGAGAT
TTGGTGCCAGATGTTTATCGATCGAAAGGTTCAACGGCAATGATTGCGGCTCCAGGGCGTGGATCCTTAGGGAGACATGC
ACAAAAACTTTCCGGTTGTCATCGGCAAGATCAGGCCAACTTCGATAGAGGAGCAACAACAACAGCGTGTCAACGGTTCG
TTCT-ACGATATAGGTGGTCGTTCGGTGTTTCATGGATAATTTTTATTACGTTTGGTGTGTTTTGTACTTTGATGAA---
-TTTTTTAATGAATATGTGCCCTTTTCCTAAAAAAAGAAGTCATGATTATATTTAGT-AGAAAAAACAAAATCCACTCCA
GAGTTTGGACCGTGGACCACCACCGC--ATAAAGAACTCACCGCGGTTGCGGCAGGAACATCCGTCCATCCGTCCTCGAG
CTCCACCCCGTCTTTACC---A--------GGCCACCGCACCACCCTTCCCCTTAACCTTAAACCCCACAATTACTTCAC
TCATCAGTCATCACTAACACCCCACTAATCCTCCCACTTCCACCATT-----CTTCTCCAGCCCACCGCCCTTTTCCCCT
--CCTCACCCCAATCTCCGTCTCTCTCATTTCCAAATCCAGCCACCTCCACCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTC--CATGGGCACGCTTCTCCGCCGCGTCCTCCTCTCCCTCGCGCTCCTCGCCGCCGCCGCGACCCCCGGCG
CGGCGGCGGCGGCGGCCAGGCTGTCGACGTCGTACTACAGCCGCAGCTGCCCCCGCGTGGAGCAGATCGTCTCGGACGTG
GTCGCCGCCAAGCAGCAGGCCAACCCGTCCACGGCGGCGGGCACGCTGCGCCTCTTCTTCCACGACTGCTTCGTCTCCGG
CTGCGACGCCTCCGTCCTCGTCTCCCCGCTCTCCTCCGACCGGACCCCGGAGCGGGCCGCGGAGATCAACCTCTCCCTCC
CGGGGGACGCCTTCGACGCCGTGGCCCGCGCCAAGGCCGCGCTGGAGGCCGCCTGCCCGGGCACCGTCTCCTGCGCCGAC
ATCCTCGCGCTGGCGGCGCGCGACCTGGTGGGGATCCTGGGCGGGCCGCGGTTCCCCGTCTTCCTCGGCCGCCGCGACGC
GCGCCGCTCCGACGCGCGCGACGTGGAGGGCAACCTCCCGCGCACCAACATGTCGGCGCGCGCCATGACGGTCCTGTTCG
CGCGCAAGGGCATCACGCCGCAGGAGATGGTGGCGCTGGCGGGCGCCCACACCGTGGGCTTCTCCCACTGCTCCGAGTTC
GCGCACCGGGTGTACAACTACAAGGGCAAGGGCGGCGGCGCCAGCGGGCACGACCCGTCGCTGAACCCGGAGTTCGCGCG
GGCGCTGCAGAGCTCCTGCGCCGGCTACGAGAGCAACCCGGACATCTCCATCTTCAACGACATCGTGACGCCGCGGGACT
TCGACGAGCTCTACTTCAAGAACCTACCCCGTGGCCTCGGGCTGCTCGCCTCCGACGCCGCGCTGTGGGAGTACCCGCCC
ACCAAGGTGTTCGTCCAGCAGTACGCCGACAACCGGACCGCCTTCTTCCAGGACTTCGCCAGGGCGATGCAGAAGCTGGG
CACCGTCGGCGTCAAGACGGGGCGGCAGGGCGTCGTCAGGCGGCAGTGCGACATCCTCGACTAAGTCCGGCGACCGGGCG
CGTTGCTACAACTTTGCCCGACGTTGTACCGTCGC-TAGTCCGGTGAAAATTGG-CGA---TATTAGGATTGGATTTTGG
TGTGTCTGCTCTCTGA---TTTCTGAATGAACTCGTGAATTGT---------------------------GATGCTTTTC
GGTCTTGTGAATTGAAAAGCGAGTGACCAAGGCCGTCCAATTTAGCGAGAGGCGCTGGGCCGTTGGCACCTCCCTTTCTG
TTACACAAGTCGTTATCGTCGCCTGGACTGGCTCATCTCGTGCATGCATTTGTTACTTTCAGTCATA-----------CA
CACATTCCGCGTAGTCATCACAGAACGCTCAATTGCCGCCGCCGAATGCTCCTTGTGG-----TTACGCAGCTAACG---
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-----------------GCGGCGGATACGCACAACGGAGCGTAGTCACGCGACCCACGGCAACCAAGGTGACACGAGCAG
ATTGCCCGCCGTTGGGGCTGGGACTTGGGCGTTGGCACATGGGAGGGCAAGGCAACATTGGCTGCTGCCTTTTTCTCGTA
CAGCGCCGGGC---------------------------------------------------------------------
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>chr2B_728
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----------------------------ATAAAGAACTCACCGCGGTTGCGGCAGGAACATCCGTCCATCCCTCCTCGAG
CTCCACCGCGGTTGCGGCAGGAACATCCGCGGCCACCGCACCACCGTTCCCCCTAACCTTAAACCTCACAATTACTTCAC
TCATCAGTCATCACTAACACCCCACTAATCCTCCCACTTCG-CCCTT-----CTTCTCCACTCCACCACCCTTTTCCCCT
--C---ACCCCAATCTCCGTCTCTCTCATTTCCAAATCCAGCCACCTCT--CTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTACATGGGCACGCTTCTCCGCCGCGTCCTCCTCTCCCTCGCGCTCCTCGCCGCTGCCGCGACCCCCGGCG
CGGCGGCGGCGGCGGCCAGGCTGTCGACGTCGTACTACAGCCGCAGCTGCCCCCGCGTGGAGCAGATCGTCTCGGACGTG
GTCGCCGCCAAGCAGCACGCCAACCCGTCCACGGCGGCGGGCACGCTGCGCCTCTTCTTCCACGACTGCTTCGTCTCCGG
CTGCGACGCCTCCGTCCTCGTCTCCCCGCTCTCCTCGGACCGTACCCCGGAGCGCGCCGCGGAGATCAACCTGTCCCTCC
CGGGGGACGCCTTCGACGCCGTGGCCCGCGCCAAGGCCGCGCTGGAGGCCGCCTGCCCGGGCACCGTCTCCTGCGCCGAC
ATCCTCGCGCTGGCCGCGCGCGACCTGGTGGGGATCCTGGGCGGGCCGCGGTTCCCCGTCCTCCTCGGCCGCCGCGACGC
GCGCCGCTCCGACGCGCGCGACGTGGAGGGCAACCTCCCGCGCACCAACATGTCGGCGCGCGCCATGACGGTCCTGTTCG
CGCGCAAGGGCATCACGCCGCAGGAGATGGTGGCGCTGGCGGGCGCCCACACCGTGGGCTTCTCCCACTGCTCCGAGTTC
GCGCACCGGGTGTACAACTACAAGGGCAAGGGCAGCGGCGC---CGGGCACGACCCGTCGCTGAACCCGGAGTTCGCGCG
GGCGCTGCAGAGCTCCTGCGCCGGCTACGAGAGCAACCCGGACATCTCCATCTTCAACGACATCGTGACGCCGCGGGACT
TCGACGAGCTCTACTTCAAGAACCTGCCCCGTGGCCTCGGGCTGCTCGCCTCCGACGCCGCGCTGTGGGAGTACCCGCCC
ACCAAGGTGTTCGTCCAGCAGTACGCCGACAACCGGACCGCCTTCTTCCAGGACTTCGCCAAGGCGATGCAGAAGCTCGG
CACCGTCGGCGTCAAGACGGGACGGCAGGGCGTCGTCAGGCGGCAGTGCGACATCCTCGACTGACCGGAGCGTGCTACTG
CTACGGGTGCC--------------GTGCCGTCGCTTAGTCCGGTGAAAATTGGACGGTACTATTAGGATTGGATTTTGG
TGTGTGTCCGCTT--TGATTTTCTGAATGAAGTTGTGAATTGCGACGCTTTTCGGCCTTGTGAACTGTGCGATGCTTTTC
GGTCTCGTGAATTGAAAAGCGAGTGACCAAGGCCGTCCAATTTAGCGAGAGGCGCTGGGCCGTTGGCACCTCCCTTTCGG
TTACACAAGTCGTTATCGTTGC-TGGACTGGTTCATCGCGTGCATGCA-TTGTTACTTTCAGTCATATACTACCACTACA
TACATTCCGCGTAGTCACCACAGAAGGCTCAATTGCCGCCGCCGAATGCTCCTCGTAG-----TTACGCAGCTAACGGGA
GGACGGGGCGTCGACCCGTTGGCTGGGCAGCTGGGGTTGCTGCGAAGTTTCTTCTATAAAAGCCCTTGGGTTGGTCTTAT
TTGTGACGCAGCTAACGGCGGCGGATAGGCACAACGAAGGGTAGTCACGCGACCCACGGCAATGAAGGTGACACGAGCAG
ATTGCCGGCCGTTGGGGTTGGGACTTGGGCGTTGGCACATGGGAGGGCAAGGCAACATTGGCTGCTGCCTTTTTCTCGTA
CAGCGCCGGGC---------------------------------------------------------------------
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>chr1D_2522
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-----------GGCCGAAATCATTATTCTAACCTTAACAGTGATCTTTGTCACAAAATGAACTCGACTTGAAAGTATTTC
ACGATCTGACCCTTTTAGAAACGCCAGATCCCGCGGCGTTGCTGCTACACATAGAAACGCCGAGGTACACCGCGTTTCTG
CCACACTTTAAAACCCCAAACCAGGCCACGTTTCTAGAAACGCCGACCTATTCTGCGTTTCTGA---------AAACGCC
ATGTGCTTTGGCGTTTCTGGGTGACATGGAAACGCCATAGGTAATGGCGTTGCTGGCGTACATGGTTGGAACAACAGTGC
CAACTATGCGAAGGGGTACACATGGACATGGTTCGTGAGAAGGAGCAGTAGGGTAGGCATTCGAAAAGTGACTTGACCTG
ACGATGACAATGTTTGATGGGTGGCGGGCCAGATTGCATGTAGCAACTTCTGGCTAATGACATACTGCCACTGTAGCAAC
ATGCACAGTGCGATGTGCTGTTGACACCCTGCGTTAATCTTGTAGGTA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSS------------S--SS----------------S--SSSS--S-S--S-----
------SS---S--S-----S--------S--------------------S-----S--S--S---S---S--SSS----
-S----------S---SSSSSS-----------SS-SS-SSSS---------------S---------SSS-S-S--S--
---S--S---S--S--SSSSSS---------------------S-----------SS--SSS--S--------S------
S----S-----S---S-S-S----S----S-----S-S----S-------------SSS--S----SSS-S-S------S
----S-----SSSS-----S-------SS------SS-------------S----SS----------SSS-SS---SSSS
S---S--------------S-------------------------S------S-SSSS-------------------S--
---------S-----------S----SS----------------------------------------------------
--------SSS---SS-SS-------------------------------------------------------------
----------------------------------------S---S--SSSSS-------------------------SS-
SS--------------------------------------------------S-------------------------S-
----------------------------------------------------------------------S---------
---------------------------------------------------------S----------------------
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--------------------------------------S-----------S----------S------------------
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------------------------------------------------------------------------------S-
-------------------------------S-----S------------------------------------------
-----------------------------------------------------------------S--------------
---------------------------------------------------------------S------------S---
----------S-------S--S--------------------------------S-------------------------
--S-----------S-----------------------------------------------------------------
------------S----------S---S--------------SS-----S------------------------------
----S---------------------------------S--------S--------------------------------
---------------------S--------------------------------S--SSSSSS-----------S-----
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----------------------------S-SS----S---S--S----------S-------------------------
----------------------------------------------------------------------------S---
----------------------S-S----S-S-------S------------S-----S-------S--S----------
-S-----------------------------------------S-S---S-----------S-S---SS-S------S-S
SSS---S---------------------------------------SS---S-SS---------SSSSSSSSS-------
--SS-SS-S---------SSS---------------------SS-------------------------------SS---
------------------------------------------------S-------------S-----------------
--------S---------------S---S-----------S--------S--S---------------------------
-----------------S------------------------S-----
>forward_80
------------------------------------------------------------TCTTCGGGAGGGGTAGTCTG
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>reverse_2091
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----------GCTTTGCCTGATGTTGTGCC--------------------------------------------------
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