Multiple sequence alignment - TraesCS2A01G324400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G324400 chr2A 100.000 2507 0 0 1 2507 554520524 554518018 0.000000e+00 4630.0
1 TraesCS2A01G324400 chr2A 84.203 728 80 15 975 1700 554512320 554511626 0.000000e+00 675.0
2 TraesCS2A01G324400 chr2B 91.653 1797 104 20 1 1774 510786883 510788656 0.000000e+00 2446.0
3 TraesCS2A01G324400 chr2B 83.955 804 88 23 975 1774 510792751 510793517 0.000000e+00 732.0
4 TraesCS2A01G324400 chr2B 92.308 52 2 2 2312 2361 511876029 511876080 3.460000e-09 73.1
5 TraesCS2A01G324400 chr2D 93.392 1029 47 12 752 1774 432000079 432001092 0.000000e+00 1504.0
6 TraesCS2A01G324400 chr2D 90.710 775 36 12 1 758 431969035 431969790 0.000000e+00 1000.0
7 TraesCS2A01G324400 chr2D 83.009 771 94 13 975 1743 432029811 432030546 0.000000e+00 664.0
8 TraesCS2A01G324400 chr2D 84.677 248 32 3 2021 2267 515829798 515829556 2.490000e-60 243.0
9 TraesCS2A01G324400 chr2D 81.250 272 27 10 1773 2022 499893376 499893107 5.470000e-47 198.0
10 TraesCS2A01G324400 chr1D 86.056 251 32 3 2035 2284 419997170 419997418 1.480000e-67 267.0
11 TraesCS2A01G324400 chr1D 83.083 266 24 5 1778 2022 64982422 64982687 3.250000e-54 222.0
12 TraesCS2A01G324400 chr6A 83.895 267 39 4 2021 2284 498005751 498006016 4.140000e-63 252.0
13 TraesCS2A01G324400 chr6A 81.273 267 28 6 1778 2022 404639743 404640009 1.970000e-46 196.0
14 TraesCS2A01G324400 chr4A 84.979 233 31 4 2054 2284 687334252 687334022 1.500000e-57 233.0
15 TraesCS2A01G324400 chr4A 82.022 267 25 6 1779 2022 182894092 182894358 3.270000e-49 206.0
16 TraesCS2A01G324400 chr5D 84.016 244 34 5 2044 2284 538525508 538525267 1.940000e-56 230.0
17 TraesCS2A01G324400 chr5D 81.467 259 40 8 1771 2022 243731336 243731079 3.270000e-49 206.0
18 TraesCS2A01G324400 chr5D 81.275 251 45 2 2035 2284 315823956 315823707 4.230000e-48 202.0
19 TraesCS2A01G324400 chr5D 92.308 52 2 2 2312 2361 71368835 71368784 3.460000e-09 73.1
20 TraesCS2A01G324400 chr3A 83.607 244 37 3 2042 2284 638900497 638900738 2.510000e-55 226.0
21 TraesCS2A01G324400 chr3A 82.197 264 27 4 1779 2022 725605754 725605491 2.530000e-50 209.0
22 TraesCS2A01G324400 chr3A 92.308 52 2 2 2312 2361 307528563 307528512 3.460000e-09 73.1
23 TraesCS2A01G324400 chr7A 82.014 278 37 6 2021 2286 650494744 650495020 9.020000e-55 224.0
24 TraesCS2A01G324400 chr7A 83.004 253 20 7 1778 2008 543426201 543425950 9.090000e-50 207.0
25 TraesCS2A01G324400 chr6D 82.721 272 27 9 1771 2022 414269944 414270215 9.020000e-55 224.0
26 TraesCS2A01G324400 chr5A 82.397 267 24 6 1778 2022 437238758 437239023 7.030000e-51 211.0
27 TraesCS2A01G324400 chr3D 82.213 253 36 9 1778 2022 476438864 476438613 2.530000e-50 209.0
28 TraesCS2A01G324400 chr3D 92.308 52 2 2 2312 2361 277416539 277416488 3.460000e-09 73.1
29 TraesCS2A01G324400 chr4D 78.997 319 51 10 2020 2326 491562591 491562905 1.180000e-48 204.0
30 TraesCS2A01G324400 chr4D 81.203 266 29 5 1778 2022 420424669 420424404 7.080000e-46 195.0
31 TraesCS2A01G324400 chr4D 80.827 266 30 5 1778 2022 332468621 332468356 3.290000e-44 189.0
32 TraesCS2A01G324400 chr4D 92.000 100 8 0 1923 2022 295227902 295227803 9.350000e-30 141.0
33 TraesCS2A01G324400 chr3B 81.387 274 29 12 1771 2022 50047858 50047585 1.180000e-48 204.0
34 TraesCS2A01G324400 chr3B 92.308 52 2 2 2312 2361 216913908 216913857 3.460000e-09 73.1
35 TraesCS2A01G324400 chr7D 81.203 266 29 5 1778 2022 394848073 394847808 7.080000e-46 195.0
36 TraesCS2A01G324400 chr4B 81.203 266 28 9 1778 2022 427628879 427629143 7.080000e-46 195.0
37 TraesCS2A01G324400 chr4B 92.308 52 2 2 2312 2361 628875176 628875227 3.460000e-09 73.1
38 TraesCS2A01G324400 chr1A 92.308 52 2 2 2312 2361 187610383 187610332 3.460000e-09 73.1
39 TraesCS2A01G324400 chr1A 92.308 52 2 2 2312 2361 266620387 266620438 3.460000e-09 73.1
40 TraesCS2A01G324400 chr1A 92.157 51 3 1 2319 2368 129310041 129309991 1.240000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G324400 chr2A 554518018 554520524 2506 True 4630 4630 100.000 1 2507 1 chr2A.!!$R2 2506
1 TraesCS2A01G324400 chr2A 554511626 554512320 694 True 675 675 84.203 975 1700 1 chr2A.!!$R1 725
2 TraesCS2A01G324400 chr2B 510786883 510788656 1773 False 2446 2446 91.653 1 1774 1 chr2B.!!$F1 1773
3 TraesCS2A01G324400 chr2B 510792751 510793517 766 False 732 732 83.955 975 1774 1 chr2B.!!$F2 799
4 TraesCS2A01G324400 chr2D 432000079 432001092 1013 False 1504 1504 93.392 752 1774 1 chr2D.!!$F2 1022
5 TraesCS2A01G324400 chr2D 431969035 431969790 755 False 1000 1000 90.710 1 758 1 chr2D.!!$F1 757
6 TraesCS2A01G324400 chr2D 432029811 432030546 735 False 664 664 83.009 975 1743 1 chr2D.!!$F3 768

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
600 602 0.32016 ACTCTGACCCGTTTTACGCC 60.32 55.0 0.0 0.0 40.91 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2287 2311 0.037697 TTCATACGCTTGCAGACGGT 60.038 50.0 13.96 1.86 0.0 4.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
139 140 4.218578 CAGCGGCTGGAGCTCGAT 62.219 66.667 22.11 4.55 44.06 3.59
196 197 2.656646 CAGTACCTGCAGTCGCCA 59.343 61.111 13.81 0.00 37.32 5.69
209 210 3.667960 GCAGTCGCCAGAAAAAGTATGTG 60.668 47.826 0.00 0.00 0.00 3.21
214 215 3.731867 CGCCAGAAAAAGTATGTGCCATC 60.732 47.826 0.00 0.00 0.00 3.51
216 217 3.763360 CCAGAAAAAGTATGTGCCATCCA 59.237 43.478 0.00 0.00 0.00 3.41
218 219 3.763897 AGAAAAAGTATGTGCCATCCACC 59.236 43.478 0.00 0.00 44.01 4.61
219 220 2.897271 AAAGTATGTGCCATCCACCA 57.103 45.000 0.00 0.00 44.01 4.17
222 223 1.095228 GTATGTGCCATCCACCACCG 61.095 60.000 0.00 0.00 44.01 4.94
223 224 1.558167 TATGTGCCATCCACCACCGT 61.558 55.000 0.00 0.00 44.01 4.83
239 241 3.306780 CCACCGTGTGTTCTTATCCTCTT 60.307 47.826 0.00 0.00 0.00 2.85
267 269 6.156083 TCTCTCCACCACACAATTGATACATA 59.844 38.462 13.59 0.00 0.00 2.29
270 272 8.490311 TCTCCACCACACAATTGATACATATTA 58.510 33.333 13.59 0.00 0.00 0.98
271 273 9.119418 CTCCACCACACAATTGATACATATTAA 57.881 33.333 13.59 0.00 0.00 1.40
272 274 8.898761 TCCACCACACAATTGATACATATTAAC 58.101 33.333 13.59 0.00 0.00 2.01
273 275 8.902806 CCACCACACAATTGATACATATTAACT 58.097 33.333 13.59 0.00 0.00 2.24
274 276 9.720667 CACCACACAATTGATACATATTAACTG 57.279 33.333 13.59 0.00 0.00 3.16
275 277 9.461312 ACCACACAATTGATACATATTAACTGT 57.539 29.630 13.59 0.00 0.00 3.55
295 297 5.009854 TGTTCGATCAGTTCATATGCTCA 57.990 39.130 0.00 0.00 0.00 4.26
296 298 4.805719 TGTTCGATCAGTTCATATGCTCAC 59.194 41.667 0.00 0.00 0.00 3.51
311 313 3.959573 GCTCACTGCATACTGATTTCC 57.040 47.619 0.00 0.00 42.31 3.13
367 369 4.758251 CGGGCGGAGTGTGCATCA 62.758 66.667 0.00 0.00 0.00 3.07
375 377 2.089980 GGAGTGTGCATCATGAGCTTT 58.910 47.619 15.20 0.00 0.00 3.51
402 404 1.536284 CGGATGTTCTACGAGAAGGCC 60.536 57.143 0.00 0.00 34.42 5.19
477 479 1.006102 CTTCCAGTGCGTCGAAGGT 60.006 57.895 0.00 0.00 31.34 3.50
562 564 3.473647 CGCTGGAGGCCCTGATGA 61.474 66.667 0.00 0.00 37.74 2.92
600 602 0.320160 ACTCTGACCCGTTTTACGCC 60.320 55.000 0.00 0.00 40.91 5.68
601 603 1.349259 CTCTGACCCGTTTTACGCCG 61.349 60.000 0.00 0.00 40.91 6.46
679 695 2.095567 CCAAGAGCAGAAAACATGTCCG 60.096 50.000 0.00 0.00 0.00 4.79
688 704 2.577606 AAACATGTCCGGATGTTGGA 57.422 45.000 21.16 0.00 44.15 3.53
689 705 2.577606 AACATGTCCGGATGTTGGAA 57.422 45.000 20.07 0.00 43.45 3.53
694 710 0.455815 GTCCGGATGTTGGAAATGCC 59.544 55.000 7.81 0.00 37.23 4.40
781 799 1.683790 GCACGCTGCCTGTAACGTAG 61.684 60.000 0.00 0.00 37.42 3.51
810 828 0.673985 CCCGCGTTCATCTGGAGATA 59.326 55.000 4.92 0.00 32.63 1.98
814 832 2.351253 CGCGTTCATCTGGAGATAGGAG 60.351 54.545 0.00 0.00 32.63 3.69
964 984 1.078426 AGCCATCCAACACCGTAGC 60.078 57.895 0.00 0.00 0.00 3.58
992 1012 4.501071 GAACTTACGAGTTGATTAGGGCA 58.499 43.478 0.00 0.00 45.88 5.36
1008 1028 4.596180 CACGGCGCAATGATCCGC 62.596 66.667 10.83 5.62 46.49 5.54
1454 1474 3.000819 ATCCGGACGCAGGGAACA 61.001 61.111 6.12 0.00 35.60 3.18
1456 1476 2.798148 ATCCGGACGCAGGGAACAAC 62.798 60.000 6.12 0.00 35.60 3.32
1562 1582 6.048732 TGCTACTCCACAACTGATTTCATA 57.951 37.500 0.00 0.00 0.00 2.15
1567 1587 5.812642 ACTCCACAACTGATTTCATACGATC 59.187 40.000 0.00 0.00 0.00 3.69
1570 1590 6.978659 TCCACAACTGATTTCATACGATCTAC 59.021 38.462 0.00 0.00 0.00 2.59
1571 1591 6.980978 CCACAACTGATTTCATACGATCTACT 59.019 38.462 0.00 0.00 0.00 2.57
1572 1592 7.168302 CCACAACTGATTTCATACGATCTACTC 59.832 40.741 0.00 0.00 0.00 2.59
1605 1626 2.030457 CGAGATCATGCCGTTTGTTACC 59.970 50.000 0.00 0.00 0.00 2.85
1611 1632 3.003897 TCATGCCGTTTGTTACCTTTGTC 59.996 43.478 0.00 0.00 0.00 3.18
1614 1635 3.181495 TGCCGTTTGTTACCTTTGTCTTG 60.181 43.478 0.00 0.00 0.00 3.02
1652 1675 7.736447 AGATTATCGGTCGTTTGTTACTTTTC 58.264 34.615 0.00 0.00 0.00 2.29
1655 1678 3.556775 TCGGTCGTTTGTTACTTTTCTGG 59.443 43.478 0.00 0.00 0.00 3.86
1774 1798 5.163683 CCCACATGAGCAGTCAAATTCTAAG 60.164 44.000 0.00 0.00 35.88 2.18
1775 1799 5.645067 CCACATGAGCAGTCAAATTCTAAGA 59.355 40.000 0.00 0.00 35.88 2.10
1776 1800 6.318144 CCACATGAGCAGTCAAATTCTAAGAT 59.682 38.462 0.00 0.00 35.88 2.40
1777 1801 7.408123 CACATGAGCAGTCAAATTCTAAGATC 58.592 38.462 0.00 0.00 35.88 2.75
1778 1802 6.541641 ACATGAGCAGTCAAATTCTAAGATCC 59.458 38.462 0.00 0.00 35.88 3.36
1779 1803 6.305272 TGAGCAGTCAAATTCTAAGATCCT 57.695 37.500 0.00 0.00 0.00 3.24
1780 1804 6.344500 TGAGCAGTCAAATTCTAAGATCCTC 58.656 40.000 0.00 0.00 0.00 3.71
1781 1805 6.155910 TGAGCAGTCAAATTCTAAGATCCTCT 59.844 38.462 0.00 0.00 0.00 3.69
1782 1806 6.956497 AGCAGTCAAATTCTAAGATCCTCTT 58.044 36.000 0.00 0.00 40.35 2.85
1783 1807 7.401246 AGCAGTCAAATTCTAAGATCCTCTTT 58.599 34.615 0.00 0.00 37.89 2.52
1784 1808 7.336427 AGCAGTCAAATTCTAAGATCCTCTTTG 59.664 37.037 0.00 0.00 37.89 2.77
1785 1809 7.335422 GCAGTCAAATTCTAAGATCCTCTTTGA 59.665 37.037 0.00 0.00 37.89 2.69
1786 1810 9.393512 CAGTCAAATTCTAAGATCCTCTTTGAT 57.606 33.333 2.67 0.00 37.88 2.57
1787 1811 9.972106 AGTCAAATTCTAAGATCCTCTTTGATT 57.028 29.630 2.67 0.00 37.88 2.57
1789 1813 9.102757 TCAAATTCTAAGATCCTCTTTGATTCG 57.897 33.333 2.67 0.00 37.88 3.34
1790 1814 8.887717 CAAATTCTAAGATCCTCTTTGATTCGT 58.112 33.333 2.67 0.00 37.88 3.85
1792 1816 9.757227 AATTCTAAGATCCTCTTTGATTCGTAG 57.243 33.333 2.67 0.00 37.88 3.51
1793 1817 7.278461 TCTAAGATCCTCTTTGATTCGTAGG 57.722 40.000 0.00 0.00 37.89 3.18
1794 1818 7.061054 TCTAAGATCCTCTTTGATTCGTAGGA 58.939 38.462 0.00 0.00 40.50 2.94
1796 1820 6.739331 AGATCCTCTTTGATTCGTAGGATT 57.261 37.500 0.00 0.00 45.05 3.01
1797 1821 7.130681 AGATCCTCTTTGATTCGTAGGATTT 57.869 36.000 0.00 0.00 45.05 2.17
1798 1822 7.569240 AGATCCTCTTTGATTCGTAGGATTTT 58.431 34.615 0.00 0.00 45.05 1.82
1799 1823 7.713073 AGATCCTCTTTGATTCGTAGGATTTTC 59.287 37.037 0.00 0.00 45.05 2.29
1800 1824 6.707290 TCCTCTTTGATTCGTAGGATTTTCA 58.293 36.000 0.00 0.00 31.41 2.69
1801 1825 7.165485 TCCTCTTTGATTCGTAGGATTTTCAA 58.835 34.615 0.00 0.00 31.41 2.69
1802 1826 7.663905 TCCTCTTTGATTCGTAGGATTTTCAAA 59.336 33.333 13.46 13.46 31.41 2.69
1803 1827 8.296713 CCTCTTTGATTCGTAGGATTTTCAAAA 58.703 33.333 14.35 0.00 0.00 2.44
1804 1828 9.118236 CTCTTTGATTCGTAGGATTTTCAAAAC 57.882 33.333 14.35 0.00 0.00 2.43
1805 1829 7.801315 TCTTTGATTCGTAGGATTTTCAAAACG 59.199 33.333 14.35 0.00 0.00 3.60
1806 1830 6.548441 TGATTCGTAGGATTTTCAAAACGT 57.452 33.333 0.00 0.00 0.00 3.99
1807 1831 7.655236 TGATTCGTAGGATTTTCAAAACGTA 57.345 32.000 0.00 0.00 0.00 3.57
1808 1832 8.259049 TGATTCGTAGGATTTTCAAAACGTAT 57.741 30.769 0.00 0.00 0.00 3.06
1809 1833 8.172484 TGATTCGTAGGATTTTCAAAACGTATG 58.828 33.333 0.00 0.00 0.00 2.39
1810 1834 7.655236 TTCGTAGGATTTTCAAAACGTATGA 57.345 32.000 0.00 0.00 30.47 2.15
1811 1835 7.655236 TCGTAGGATTTTCAAAACGTATGAA 57.345 32.000 11.45 11.45 35.11 2.57
1812 1836 8.259049 TCGTAGGATTTTCAAAACGTATGAAT 57.741 30.769 15.05 4.28 36.72 2.57
1813 1837 9.368674 TCGTAGGATTTTCAAAACGTATGAATA 57.631 29.630 15.05 11.76 36.72 1.75
1814 1838 9.976255 CGTAGGATTTTCAAAACGTATGAATAA 57.024 29.630 15.05 12.56 36.72 1.40
1837 1861 5.508200 AAAAACGTGAGATTAAAGTGGCA 57.492 34.783 0.00 0.00 0.00 4.92
1838 1862 5.705609 AAAACGTGAGATTAAAGTGGCAT 57.294 34.783 0.00 0.00 0.00 4.40
1839 1863 4.685169 AACGTGAGATTAAAGTGGCATG 57.315 40.909 0.00 0.00 0.00 4.06
1840 1864 3.674997 ACGTGAGATTAAAGTGGCATGT 58.325 40.909 0.00 0.00 0.00 3.21
1841 1865 3.684788 ACGTGAGATTAAAGTGGCATGTC 59.315 43.478 0.00 0.00 0.00 3.06
1842 1866 3.684305 CGTGAGATTAAAGTGGCATGTCA 59.316 43.478 0.00 0.00 0.00 3.58
1843 1867 4.333649 CGTGAGATTAAAGTGGCATGTCAT 59.666 41.667 1.89 0.00 0.00 3.06
1844 1868 5.503031 CGTGAGATTAAAGTGGCATGTCATC 60.503 44.000 1.89 0.00 0.00 2.92
1845 1869 5.587844 GTGAGATTAAAGTGGCATGTCATCT 59.412 40.000 1.89 0.00 0.00 2.90
1846 1870 6.094603 GTGAGATTAAAGTGGCATGTCATCTT 59.905 38.462 1.89 6.30 0.00 2.40
1847 1871 7.280876 GTGAGATTAAAGTGGCATGTCATCTTA 59.719 37.037 1.89 1.43 0.00 2.10
1848 1872 7.828717 TGAGATTAAAGTGGCATGTCATCTTAA 59.171 33.333 1.89 10.87 0.00 1.85
1849 1873 8.579850 AGATTAAAGTGGCATGTCATCTTAAA 57.420 30.769 16.18 4.79 0.00 1.52
1850 1874 9.193806 AGATTAAAGTGGCATGTCATCTTAAAT 57.806 29.630 16.18 8.49 0.00 1.40
1851 1875 9.455847 GATTAAAGTGGCATGTCATCTTAAATC 57.544 33.333 16.18 12.32 0.00 2.17
1852 1876 5.841957 AAGTGGCATGTCATCTTAAATCC 57.158 39.130 1.89 0.00 0.00 3.01
1853 1877 5.121380 AGTGGCATGTCATCTTAAATCCT 57.879 39.130 1.89 0.00 0.00 3.24
1854 1878 6.252599 AGTGGCATGTCATCTTAAATCCTA 57.747 37.500 1.89 0.00 0.00 2.94
1855 1879 6.662755 AGTGGCATGTCATCTTAAATCCTAA 58.337 36.000 1.89 0.00 0.00 2.69
1856 1880 7.293073 AGTGGCATGTCATCTTAAATCCTAAT 58.707 34.615 1.89 0.00 0.00 1.73
1857 1881 7.230108 AGTGGCATGTCATCTTAAATCCTAATG 59.770 37.037 1.89 0.00 0.00 1.90
1858 1882 7.229306 GTGGCATGTCATCTTAAATCCTAATGA 59.771 37.037 1.89 0.00 0.00 2.57
1859 1883 7.946219 TGGCATGTCATCTTAAATCCTAATGAT 59.054 33.333 0.00 0.00 34.22 2.45
1860 1884 8.800332 GGCATGTCATCTTAAATCCTAATGATT 58.200 33.333 0.00 0.00 45.75 2.57
1861 1885 9.622004 GCATGTCATCTTAAATCCTAATGATTG 57.378 33.333 0.00 0.00 42.97 2.67
1881 1905 9.872721 ATGATTGTATAAATGTTTGATTGTGCA 57.127 25.926 0.00 0.00 0.00 4.57
1882 1906 9.872721 TGATTGTATAAATGTTTGATTGTGCAT 57.127 25.926 0.00 0.00 0.00 3.96
1910 1934 6.803154 AAACGTAGGATTCTTTCAAAGAGG 57.197 37.500 0.00 0.00 39.03 3.69
1911 1935 5.485209 ACGTAGGATTCTTTCAAAGAGGT 57.515 39.130 0.00 0.00 39.03 3.85
1912 1936 5.866207 ACGTAGGATTCTTTCAAAGAGGTT 58.134 37.500 0.00 0.00 39.03 3.50
1913 1937 6.296803 ACGTAGGATTCTTTCAAAGAGGTTT 58.703 36.000 0.00 0.00 39.03 3.27
1914 1938 6.204882 ACGTAGGATTCTTTCAAAGAGGTTTG 59.795 38.462 0.00 0.00 43.96 2.93
1923 1947 4.073293 TCAAAGAGGTTTGAGTGGAGTC 57.927 45.455 0.00 0.00 45.82 3.36
1924 1948 3.711704 TCAAAGAGGTTTGAGTGGAGTCT 59.288 43.478 0.00 0.00 45.82 3.24
1925 1949 4.899457 TCAAAGAGGTTTGAGTGGAGTCTA 59.101 41.667 0.00 0.00 45.82 2.59
1926 1950 5.011125 TCAAAGAGGTTTGAGTGGAGTCTAG 59.989 44.000 0.00 0.00 45.82 2.43
1927 1951 4.120946 AGAGGTTTGAGTGGAGTCTAGT 57.879 45.455 0.00 0.00 0.00 2.57
1928 1952 3.829601 AGAGGTTTGAGTGGAGTCTAGTG 59.170 47.826 0.00 0.00 0.00 2.74
1929 1953 2.300437 AGGTTTGAGTGGAGTCTAGTGC 59.700 50.000 0.00 0.00 0.00 4.40
1930 1954 2.037251 GGTTTGAGTGGAGTCTAGTGCA 59.963 50.000 0.00 0.00 0.00 4.57
1931 1955 3.494398 GGTTTGAGTGGAGTCTAGTGCAA 60.494 47.826 0.00 0.00 0.00 4.08
1932 1956 4.127171 GTTTGAGTGGAGTCTAGTGCAAA 58.873 43.478 0.00 0.00 0.00 3.68
1933 1957 4.623932 TTGAGTGGAGTCTAGTGCAAAT 57.376 40.909 0.00 0.00 0.00 2.32
1934 1958 3.930336 TGAGTGGAGTCTAGTGCAAATG 58.070 45.455 0.00 0.00 0.00 2.32
1935 1959 3.578282 TGAGTGGAGTCTAGTGCAAATGA 59.422 43.478 0.00 0.00 0.00 2.57
1936 1960 4.040339 TGAGTGGAGTCTAGTGCAAATGAA 59.960 41.667 0.00 0.00 0.00 2.57
1937 1961 5.171339 AGTGGAGTCTAGTGCAAATGAAT 57.829 39.130 0.00 0.00 0.00 2.57
1938 1962 5.181748 AGTGGAGTCTAGTGCAAATGAATC 58.818 41.667 0.00 0.00 0.00 2.52
1939 1963 4.937620 GTGGAGTCTAGTGCAAATGAATCA 59.062 41.667 11.61 0.00 0.00 2.57
1940 1964 5.587844 GTGGAGTCTAGTGCAAATGAATCAT 59.412 40.000 11.61 0.00 0.00 2.45
1941 1965 6.763135 GTGGAGTCTAGTGCAAATGAATCATA 59.237 38.462 0.00 1.16 0.00 2.15
1942 1966 7.443575 GTGGAGTCTAGTGCAAATGAATCATAT 59.556 37.037 0.00 0.00 0.00 1.78
1943 1967 7.443272 TGGAGTCTAGTGCAAATGAATCATATG 59.557 37.037 0.00 0.00 0.00 1.78
1944 1968 7.658982 GGAGTCTAGTGCAAATGAATCATATGA 59.341 37.037 8.10 8.10 0.00 2.15
1945 1969 8.969260 AGTCTAGTGCAAATGAATCATATGAA 57.031 30.769 9.99 0.00 0.00 2.57
1946 1970 9.399797 AGTCTAGTGCAAATGAATCATATGAAA 57.600 29.630 9.99 0.00 0.00 2.69
1979 2003 6.879276 TGGTTTACAATACCACGAATCAAA 57.121 33.333 0.00 0.00 40.65 2.69
1980 2004 6.670233 TGGTTTACAATACCACGAATCAAAC 58.330 36.000 0.00 0.00 40.65 2.93
1981 2005 6.262496 TGGTTTACAATACCACGAATCAAACA 59.738 34.615 0.00 0.00 40.65 2.83
1982 2006 7.140048 GGTTTACAATACCACGAATCAAACAA 58.860 34.615 0.00 0.00 35.67 2.83
1983 2007 7.113825 GGTTTACAATACCACGAATCAAACAAC 59.886 37.037 0.00 0.00 35.67 3.32
1984 2008 5.116069 ACAATACCACGAATCAAACAACC 57.884 39.130 0.00 0.00 0.00 3.77
1985 2009 4.825085 ACAATACCACGAATCAAACAACCT 59.175 37.500 0.00 0.00 0.00 3.50
1986 2010 5.998981 ACAATACCACGAATCAAACAACCTA 59.001 36.000 0.00 0.00 0.00 3.08
1987 2011 6.072893 ACAATACCACGAATCAAACAACCTAC 60.073 38.462 0.00 0.00 0.00 3.18
1988 2012 3.811083 ACCACGAATCAAACAACCTACA 58.189 40.909 0.00 0.00 0.00 2.74
1989 2013 4.394729 ACCACGAATCAAACAACCTACAT 58.605 39.130 0.00 0.00 0.00 2.29
1990 2014 5.553123 ACCACGAATCAAACAACCTACATA 58.447 37.500 0.00 0.00 0.00 2.29
1991 2015 5.642063 ACCACGAATCAAACAACCTACATAG 59.358 40.000 0.00 0.00 0.00 2.23
1993 2017 5.872617 CACGAATCAAACAACCTACATAGGA 59.127 40.000 12.05 0.00 46.63 2.94
1994 2018 6.036083 CACGAATCAAACAACCTACATAGGAG 59.964 42.308 12.05 6.33 46.63 3.69
1995 2019 6.070995 ACGAATCAAACAACCTACATAGGAGA 60.071 38.462 12.05 0.95 46.63 3.71
1996 2020 6.816640 CGAATCAAACAACCTACATAGGAGAA 59.183 38.462 12.05 0.00 46.63 2.87
1997 2021 7.333423 CGAATCAAACAACCTACATAGGAGAAA 59.667 37.037 12.05 0.00 46.63 2.52
1998 2022 9.178758 GAATCAAACAACCTACATAGGAGAAAT 57.821 33.333 12.05 0.00 46.63 2.17
1999 2023 9.533831 AATCAAACAACCTACATAGGAGAAATT 57.466 29.630 12.05 0.00 46.63 1.82
2000 2024 8.561738 TCAAACAACCTACATAGGAGAAATTC 57.438 34.615 12.05 0.00 46.63 2.17
2001 2025 8.160765 TCAAACAACCTACATAGGAGAAATTCA 58.839 33.333 12.05 0.00 46.63 2.57
2002 2026 8.960591 CAAACAACCTACATAGGAGAAATTCAT 58.039 33.333 12.05 0.00 46.63 2.57
2005 2029 9.838339 ACAACCTACATAGGAGAAATTCATAAG 57.162 33.333 12.05 0.00 46.63 1.73
2006 2030 9.277783 CAACCTACATAGGAGAAATTCATAAGG 57.722 37.037 12.05 0.00 46.63 2.69
2007 2031 8.798975 ACCTACATAGGAGAAATTCATAAGGA 57.201 34.615 12.05 0.00 46.63 3.36
2008 2032 8.875168 ACCTACATAGGAGAAATTCATAAGGAG 58.125 37.037 12.05 0.00 46.63 3.69
2009 2033 8.875168 CCTACATAGGAGAAATTCATAAGGAGT 58.125 37.037 0.00 0.00 46.63 3.85
2012 2036 9.661954 ACATAGGAGAAATTCATAAGGAGTAGA 57.338 33.333 0.00 0.00 0.00 2.59
2016 2040 8.655901 AGGAGAAATTCATAAGGAGTAGAATCC 58.344 37.037 0.00 0.00 39.89 3.01
2024 2048 2.920724 GGAGTAGAATCCTCCAAGGC 57.079 55.000 1.64 0.00 46.46 4.35
2025 2049 1.418264 GGAGTAGAATCCTCCAAGGCC 59.582 57.143 0.00 0.00 46.46 5.19
2026 2050 2.403561 GAGTAGAATCCTCCAAGGCCT 58.596 52.381 0.00 0.00 34.61 5.19
2027 2051 2.774809 GAGTAGAATCCTCCAAGGCCTT 59.225 50.000 13.78 13.78 34.61 4.35
2028 2052 2.774809 AGTAGAATCCTCCAAGGCCTTC 59.225 50.000 17.29 1.04 34.61 3.46
2029 2053 1.978361 AGAATCCTCCAAGGCCTTCT 58.022 50.000 17.29 3.92 34.41 2.85
2030 2054 2.282900 AGAATCCTCCAAGGCCTTCTT 58.717 47.619 17.29 2.35 35.14 2.52
2031 2055 2.651841 AGAATCCTCCAAGGCCTTCTTT 59.348 45.455 17.29 2.92 35.14 2.52
2032 2056 2.521547 ATCCTCCAAGGCCTTCTTTG 57.478 50.000 17.29 4.85 34.61 2.77
2033 2057 0.405585 TCCTCCAAGGCCTTCTTTGG 59.594 55.000 17.29 15.53 34.61 3.28
2034 2058 0.113190 CCTCCAAGGCCTTCTTTGGT 59.887 55.000 17.29 0.00 32.41 3.67
2035 2059 1.481242 CCTCCAAGGCCTTCTTTGGTT 60.481 52.381 17.29 0.00 32.41 3.67
2036 2060 2.319844 CTCCAAGGCCTTCTTTGGTTT 58.680 47.619 17.29 0.00 32.41 3.27
2037 2061 2.036346 CTCCAAGGCCTTCTTTGGTTTG 59.964 50.000 17.29 0.91 32.41 2.93
2038 2062 1.070601 CCAAGGCCTTCTTTGGTTTGG 59.929 52.381 17.29 7.58 37.49 3.28
2039 2063 2.038659 CAAGGCCTTCTTTGGTTTGGA 58.961 47.619 17.29 0.00 32.41 3.53
2040 2064 2.001076 AGGCCTTCTTTGGTTTGGAG 57.999 50.000 0.00 0.00 0.00 3.86
2041 2065 0.969149 GGCCTTCTTTGGTTTGGAGG 59.031 55.000 0.00 0.00 0.00 4.30
2042 2066 1.480498 GGCCTTCTTTGGTTTGGAGGA 60.480 52.381 0.00 0.00 0.00 3.71
2043 2067 2.316108 GCCTTCTTTGGTTTGGAGGAA 58.684 47.619 0.00 0.00 0.00 3.36
2044 2068 2.899900 GCCTTCTTTGGTTTGGAGGAAT 59.100 45.455 0.00 0.00 0.00 3.01
2045 2069 3.324846 GCCTTCTTTGGTTTGGAGGAATT 59.675 43.478 0.00 0.00 0.00 2.17
2046 2070 4.202357 GCCTTCTTTGGTTTGGAGGAATTT 60.202 41.667 0.00 0.00 0.00 1.82
2047 2071 5.687441 GCCTTCTTTGGTTTGGAGGAATTTT 60.687 40.000 0.00 0.00 0.00 1.82
2048 2072 6.463755 GCCTTCTTTGGTTTGGAGGAATTTTA 60.464 38.462 0.00 0.00 0.00 1.52
2049 2073 7.679783 CCTTCTTTGGTTTGGAGGAATTTTAT 58.320 34.615 0.00 0.00 0.00 1.40
2050 2074 8.811994 CCTTCTTTGGTTTGGAGGAATTTTATA 58.188 33.333 0.00 0.00 0.00 0.98
2051 2075 9.860898 CTTCTTTGGTTTGGAGGAATTTTATAG 57.139 33.333 0.00 0.00 0.00 1.31
2052 2076 9.594936 TTCTTTGGTTTGGAGGAATTTTATAGA 57.405 29.630 0.00 0.00 0.00 1.98
2053 2077 9.594936 TCTTTGGTTTGGAGGAATTTTATAGAA 57.405 29.630 0.00 0.00 0.00 2.10
2097 2121 6.723298 TTTTCTTTAGAGCCATTTGGTTCA 57.277 33.333 14.77 0.09 46.37 3.18
2098 2122 6.916360 TTTCTTTAGAGCCATTTGGTTCAT 57.084 33.333 14.77 4.10 46.37 2.57
2099 2123 8.415950 TTTTCTTTAGAGCCATTTGGTTCATA 57.584 30.769 14.77 3.29 46.37 2.15
2100 2124 7.630242 TTCTTTAGAGCCATTTGGTTCATAG 57.370 36.000 14.77 8.89 46.37 2.23
2101 2125 6.957631 TCTTTAGAGCCATTTGGTTCATAGA 58.042 36.000 14.77 10.66 46.37 1.98
2102 2126 7.402054 TCTTTAGAGCCATTTGGTTCATAGAA 58.598 34.615 14.77 2.27 46.37 2.10
2103 2127 7.888021 TCTTTAGAGCCATTTGGTTCATAGAAA 59.112 33.333 14.77 8.61 46.37 2.52
2104 2128 5.904362 AGAGCCATTTGGTTCATAGAAAC 57.096 39.130 14.77 0.00 46.37 2.78
2105 2129 4.396166 AGAGCCATTTGGTTCATAGAAACG 59.604 41.667 14.77 0.00 46.37 3.60
2106 2130 3.443681 AGCCATTTGGTTCATAGAAACGG 59.556 43.478 0.00 0.00 37.57 4.44
2107 2131 3.442273 GCCATTTGGTTCATAGAAACGGA 59.558 43.478 0.00 0.00 37.57 4.69
2108 2132 4.097892 GCCATTTGGTTCATAGAAACGGAT 59.902 41.667 0.00 0.00 37.57 4.18
2109 2133 5.394115 GCCATTTGGTTCATAGAAACGGATT 60.394 40.000 0.00 0.00 37.57 3.01
2110 2134 6.265577 CCATTTGGTTCATAGAAACGGATTC 58.734 40.000 0.00 0.00 38.39 2.52
2111 2135 5.890424 TTTGGTTCATAGAAACGGATTCC 57.110 39.130 0.00 0.00 38.94 3.01
2112 2136 4.837093 TGGTTCATAGAAACGGATTCCT 57.163 40.909 0.30 0.00 38.94 3.36
2113 2137 5.943349 TGGTTCATAGAAACGGATTCCTA 57.057 39.130 0.30 0.00 38.94 2.94
2114 2138 6.494666 TGGTTCATAGAAACGGATTCCTAT 57.505 37.500 0.30 0.00 38.94 2.57
2115 2139 6.895782 TGGTTCATAGAAACGGATTCCTATT 58.104 36.000 0.30 0.00 38.94 1.73
2116 2140 6.990349 TGGTTCATAGAAACGGATTCCTATTC 59.010 38.462 0.30 5.33 38.94 1.75
2117 2141 6.427242 GGTTCATAGAAACGGATTCCTATTCC 59.573 42.308 11.56 0.00 38.94 3.01
2118 2142 6.996180 TCATAGAAACGGATTCCTATTCCT 57.004 37.500 11.56 0.00 38.94 3.36
2119 2143 8.365647 GTTCATAGAAACGGATTCCTATTCCTA 58.634 37.037 11.56 0.99 38.94 2.94
2120 2144 7.893658 TCATAGAAACGGATTCCTATTCCTAC 58.106 38.462 11.56 0.00 38.94 3.18
2121 2145 7.507956 TCATAGAAACGGATTCCTATTCCTACA 59.492 37.037 11.56 0.38 38.94 2.74
2122 2146 5.915175 AGAAACGGATTCCTATTCCTACAC 58.085 41.667 11.56 0.00 38.94 2.90
2123 2147 5.424252 AGAAACGGATTCCTATTCCTACACA 59.576 40.000 11.56 0.00 38.94 3.72
2124 2148 4.939052 ACGGATTCCTATTCCTACACAG 57.061 45.455 0.30 0.00 0.00 3.66
2125 2149 3.641906 ACGGATTCCTATTCCTACACAGG 59.358 47.826 0.30 0.00 44.17 4.00
2126 2150 9.252290 GAAACGGATTCCTATTCCTACACAGGA 62.252 44.444 0.30 0.00 39.50 3.86
2139 2163 7.540474 TCCTACACAGGATTAGTTCATATCC 57.460 40.000 0.00 0.00 46.58 2.59
2141 2165 7.451877 TCCTACACAGGATTAGTTCATATCCTC 59.548 40.741 0.00 0.00 45.94 3.71
2142 2166 6.426646 ACACAGGATTAGTTCATATCCTCC 57.573 41.667 0.00 0.00 45.94 4.30
2143 2167 5.905331 ACACAGGATTAGTTCATATCCTCCA 59.095 40.000 0.00 0.00 45.94 3.86
2144 2168 6.183361 ACACAGGATTAGTTCATATCCTCCAC 60.183 42.308 0.00 0.00 45.94 4.02
2145 2169 5.905331 ACAGGATTAGTTCATATCCTCCACA 59.095 40.000 0.00 0.00 45.94 4.17
2146 2170 6.560304 ACAGGATTAGTTCATATCCTCCACAT 59.440 38.462 0.00 0.00 45.94 3.21
2147 2171 7.072961 ACAGGATTAGTTCATATCCTCCACATT 59.927 37.037 0.00 0.00 45.94 2.71
2148 2172 7.941238 CAGGATTAGTTCATATCCTCCACATTT 59.059 37.037 0.00 0.00 45.94 2.32
2149 2173 8.160106 AGGATTAGTTCATATCCTCCACATTTC 58.840 37.037 0.00 0.00 45.94 2.17
2150 2174 7.939039 GGATTAGTTCATATCCTCCACATTTCA 59.061 37.037 0.00 0.00 37.83 2.69
2151 2175 9.342308 GATTAGTTCATATCCTCCACATTTCAA 57.658 33.333 0.00 0.00 0.00 2.69
2152 2176 9.699410 ATTAGTTCATATCCTCCACATTTCAAA 57.301 29.630 0.00 0.00 0.00 2.69
2153 2177 7.636150 AGTTCATATCCTCCACATTTCAAAG 57.364 36.000 0.00 0.00 0.00 2.77
2154 2178 7.405292 AGTTCATATCCTCCACATTTCAAAGA 58.595 34.615 0.00 0.00 0.00 2.52
2155 2179 7.890127 AGTTCATATCCTCCACATTTCAAAGAA 59.110 33.333 0.00 0.00 0.00 2.52
2156 2180 8.522830 GTTCATATCCTCCACATTTCAAAGAAA 58.477 33.333 0.00 0.00 0.00 2.52
2157 2181 8.648698 TCATATCCTCCACATTTCAAAGAAAA 57.351 30.769 0.00 0.00 0.00 2.29
2158 2182 9.258629 TCATATCCTCCACATTTCAAAGAAAAT 57.741 29.630 0.00 0.00 0.00 1.82
2159 2183 9.880157 CATATCCTCCACATTTCAAAGAAAATT 57.120 29.630 0.00 0.00 0.00 1.82
2163 2187 9.541143 TCCTCCACATTTCAAAGAAAATTAAAC 57.459 29.630 0.00 0.00 0.00 2.01
2164 2188 9.323985 CCTCCACATTTCAAAGAAAATTAAACA 57.676 29.630 0.00 0.00 0.00 2.83
2210 2234 4.514545 TCGTATGATGCGAACAAATGAC 57.485 40.909 2.46 0.00 35.28 3.06
2211 2235 3.929610 TCGTATGATGCGAACAAATGACA 59.070 39.130 2.46 0.00 35.28 3.58
2212 2236 4.570369 TCGTATGATGCGAACAAATGACAT 59.430 37.500 2.46 0.00 35.28 3.06
2213 2237 5.064579 TCGTATGATGCGAACAAATGACATT 59.935 36.000 2.46 0.00 35.28 2.71
2214 2238 5.738693 CGTATGATGCGAACAAATGACATTT 59.261 36.000 7.62 7.62 0.00 2.32
2215 2239 6.251163 CGTATGATGCGAACAAATGACATTTT 59.749 34.615 10.77 0.00 0.00 1.82
2216 2240 7.201342 CGTATGATGCGAACAAATGACATTTTT 60.201 33.333 10.77 8.85 0.00 1.94
2251 2275 9.716531 TCTTACTCATAGGATTTAAGATGCATG 57.283 33.333 2.46 0.00 29.28 4.06
2252 2276 9.499479 CTTACTCATAGGATTTAAGATGCATGT 57.501 33.333 2.46 0.00 0.00 3.21
2253 2277 7.976135 ACTCATAGGATTTAAGATGCATGTC 57.024 36.000 2.46 0.00 0.00 3.06
2254 2278 7.512130 ACTCATAGGATTTAAGATGCATGTCA 58.488 34.615 2.46 0.00 0.00 3.58
2255 2279 8.162085 ACTCATAGGATTTAAGATGCATGTCAT 58.838 33.333 2.46 2.78 38.32 3.06
2269 2293 8.557592 GATGCATGTCATCTCATTTCCTATAA 57.442 34.615 2.46 0.00 46.29 0.98
2270 2294 7.974482 TGCATGTCATCTCATTTCCTATAAG 57.026 36.000 0.00 0.00 0.00 1.73
2271 2295 7.512130 TGCATGTCATCTCATTTCCTATAAGT 58.488 34.615 0.00 0.00 0.00 2.24
2272 2296 7.994911 TGCATGTCATCTCATTTCCTATAAGTT 59.005 33.333 0.00 0.00 0.00 2.66
2273 2297 8.844244 GCATGTCATCTCATTTCCTATAAGTTT 58.156 33.333 0.00 0.00 0.00 2.66
2286 2310 9.538508 TTTCCTATAAGTTTCTTATTCCTACGC 57.461 33.333 7.22 0.00 0.00 4.42
2287 2311 8.241497 TCCTATAAGTTTCTTATTCCTACGCA 57.759 34.615 7.22 0.00 0.00 5.24
2288 2312 8.139989 TCCTATAAGTTTCTTATTCCTACGCAC 58.860 37.037 7.22 0.00 0.00 5.34
2289 2313 7.384387 CCTATAAGTTTCTTATTCCTACGCACC 59.616 40.741 7.22 0.00 0.00 5.01
2290 2314 3.518590 AGTTTCTTATTCCTACGCACCG 58.481 45.455 0.00 0.00 0.00 4.94
2291 2315 3.056322 AGTTTCTTATTCCTACGCACCGT 60.056 43.478 0.00 0.00 44.35 4.83
2292 2316 2.857592 TCTTATTCCTACGCACCGTC 57.142 50.000 0.00 0.00 41.54 4.79
2293 2317 2.372264 TCTTATTCCTACGCACCGTCT 58.628 47.619 0.00 0.00 41.54 4.18
2294 2318 2.098607 TCTTATTCCTACGCACCGTCTG 59.901 50.000 0.00 0.00 41.54 3.51
2295 2319 0.101759 TATTCCTACGCACCGTCTGC 59.898 55.000 0.00 0.00 41.54 4.26
2302 2326 2.736995 GCACCGTCTGCAAGCGTA 60.737 61.111 8.44 0.00 46.29 4.42
2303 2327 2.100631 GCACCGTCTGCAAGCGTAT 61.101 57.895 8.44 0.00 46.29 3.06
2304 2328 1.709760 CACCGTCTGCAAGCGTATG 59.290 57.895 8.44 3.64 32.87 2.39
2305 2329 0.735978 CACCGTCTGCAAGCGTATGA 60.736 55.000 8.44 0.00 32.87 2.15
2306 2330 0.037697 ACCGTCTGCAAGCGTATGAA 60.038 50.000 8.44 0.00 32.87 2.57
2307 2331 0.370273 CCGTCTGCAAGCGTATGAAC 59.630 55.000 8.44 0.00 32.87 3.18
2308 2332 0.370273 CGTCTGCAAGCGTATGAACC 59.630 55.000 1.89 0.00 0.00 3.62
2309 2333 1.438651 GTCTGCAAGCGTATGAACCA 58.561 50.000 0.00 0.00 0.00 3.67
2310 2334 1.804151 GTCTGCAAGCGTATGAACCAA 59.196 47.619 0.00 0.00 0.00 3.67
2311 2335 2.225491 GTCTGCAAGCGTATGAACCAAA 59.775 45.455 0.00 0.00 0.00 3.28
2312 2336 2.483877 TCTGCAAGCGTATGAACCAAAG 59.516 45.455 0.00 0.00 0.00 2.77
2313 2337 2.483877 CTGCAAGCGTATGAACCAAAGA 59.516 45.455 0.00 0.00 0.00 2.52
2314 2338 2.881513 TGCAAGCGTATGAACCAAAGAA 59.118 40.909 0.00 0.00 0.00 2.52
2315 2339 3.058293 TGCAAGCGTATGAACCAAAGAAG 60.058 43.478 0.00 0.00 0.00 2.85
2316 2340 3.670627 GCAAGCGTATGAACCAAAGAAGG 60.671 47.826 0.00 0.00 0.00 3.46
2317 2341 2.084546 AGCGTATGAACCAAAGAAGGC 58.915 47.619 0.00 0.00 0.00 4.35
2318 2342 1.132453 GCGTATGAACCAAAGAAGGCC 59.868 52.381 0.00 0.00 0.00 5.19
2319 2343 1.743394 CGTATGAACCAAAGAAGGCCC 59.257 52.381 0.00 0.00 0.00 5.80
2320 2344 2.802719 GTATGAACCAAAGAAGGCCCA 58.197 47.619 0.00 0.00 0.00 5.36
2321 2345 2.397044 ATGAACCAAAGAAGGCCCAA 57.603 45.000 0.00 0.00 0.00 4.12
2322 2346 2.166907 TGAACCAAAGAAGGCCCAAA 57.833 45.000 0.00 0.00 0.00 3.28
2323 2347 2.472029 TGAACCAAAGAAGGCCCAAAA 58.528 42.857 0.00 0.00 0.00 2.44
2324 2348 3.044894 TGAACCAAAGAAGGCCCAAAAT 58.955 40.909 0.00 0.00 0.00 1.82
2325 2349 3.457749 TGAACCAAAGAAGGCCCAAAATT 59.542 39.130 0.00 0.00 0.00 1.82
2326 2350 3.769739 ACCAAAGAAGGCCCAAAATTC 57.230 42.857 0.00 0.00 0.00 2.17
2327 2351 2.371841 ACCAAAGAAGGCCCAAAATTCC 59.628 45.455 0.00 0.00 0.00 3.01
2328 2352 2.639347 CCAAAGAAGGCCCAAAATTCCT 59.361 45.455 0.00 0.00 0.00 3.36
2329 2353 3.306989 CCAAAGAAGGCCCAAAATTCCTC 60.307 47.826 0.00 0.00 0.00 3.71
2330 2354 3.549898 AAGAAGGCCCAAAATTCCTCT 57.450 42.857 0.00 0.00 0.00 3.69
2331 2355 2.812658 AGAAGGCCCAAAATTCCTCTG 58.187 47.619 0.00 0.00 0.00 3.35
2332 2356 2.379907 AGAAGGCCCAAAATTCCTCTGA 59.620 45.455 0.00 0.00 0.00 3.27
2333 2357 2.521547 AGGCCCAAAATTCCTCTGAG 57.478 50.000 0.00 0.00 0.00 3.35
2334 2358 1.995542 AGGCCCAAAATTCCTCTGAGA 59.004 47.619 6.17 0.00 0.00 3.27
2335 2359 2.379907 AGGCCCAAAATTCCTCTGAGAA 59.620 45.455 6.17 0.00 0.00 2.87
2336 2360 3.012161 AGGCCCAAAATTCCTCTGAGAAT 59.988 43.478 6.17 1.73 38.11 2.40
2337 2361 3.382865 GGCCCAAAATTCCTCTGAGAATC 59.617 47.826 6.17 0.00 35.40 2.52
2338 2362 3.382865 GCCCAAAATTCCTCTGAGAATCC 59.617 47.826 6.17 0.00 35.40 3.01
2339 2363 4.864726 CCCAAAATTCCTCTGAGAATCCT 58.135 43.478 6.17 0.00 35.40 3.24
2340 2364 5.267587 CCCAAAATTCCTCTGAGAATCCTT 58.732 41.667 6.17 0.41 35.40 3.36
2341 2365 5.718607 CCCAAAATTCCTCTGAGAATCCTTT 59.281 40.000 6.17 1.28 35.40 3.11
2342 2366 6.350780 CCCAAAATTCCTCTGAGAATCCTTTG 60.351 42.308 6.17 11.18 35.40 2.77
2343 2367 6.435277 CCAAAATTCCTCTGAGAATCCTTTGA 59.565 38.462 6.17 0.00 36.73 2.69
2344 2368 7.039504 CCAAAATTCCTCTGAGAATCCTTTGAA 60.040 37.037 6.17 0.00 36.73 2.69
2345 2369 8.529476 CAAAATTCCTCTGAGAATCCTTTGAAT 58.471 33.333 6.17 1.35 36.73 2.57
2346 2370 7.878547 AATTCCTCTGAGAATCCTTTGAATC 57.121 36.000 6.17 0.00 35.40 2.52
2347 2371 6.378661 TTCCTCTGAGAATCCTTTGAATCA 57.621 37.500 6.17 0.00 0.00 2.57
2348 2372 6.378661 TCCTCTGAGAATCCTTTGAATCAA 57.621 37.500 6.17 0.00 0.00 2.57
2349 2373 6.782986 TCCTCTGAGAATCCTTTGAATCAAA 58.217 36.000 8.25 8.25 0.00 2.69
2362 2386 5.920193 TTGAATCAAAGAAGCCCTAATGG 57.080 39.130 0.00 0.00 37.09 3.16
2363 2387 4.934356 TGAATCAAAGAAGCCCTAATGGT 58.066 39.130 0.00 0.00 36.04 3.55
2364 2388 4.706476 TGAATCAAAGAAGCCCTAATGGTG 59.294 41.667 0.00 0.00 36.04 4.17
2365 2389 2.446435 TCAAAGAAGCCCTAATGGTGC 58.554 47.619 0.00 0.00 36.04 5.01
2366 2390 2.170166 CAAAGAAGCCCTAATGGTGCA 58.830 47.619 0.00 0.00 36.04 4.57
2367 2391 2.762327 CAAAGAAGCCCTAATGGTGCAT 59.238 45.455 0.00 0.00 36.04 3.96
2368 2392 2.355010 AGAAGCCCTAATGGTGCATC 57.645 50.000 0.00 0.00 36.04 3.91
2369 2393 1.133668 AGAAGCCCTAATGGTGCATCC 60.134 52.381 0.00 0.00 36.04 3.51
2370 2394 0.929244 AAGCCCTAATGGTGCATCCT 59.071 50.000 0.00 0.00 37.07 3.24
2371 2395 0.929244 AGCCCTAATGGTGCATCCTT 59.071 50.000 0.00 0.00 37.07 3.36
2372 2396 2.135189 AGCCCTAATGGTGCATCCTTA 58.865 47.619 0.00 0.00 37.07 2.69
2373 2397 2.158608 AGCCCTAATGGTGCATCCTTAC 60.159 50.000 0.00 0.00 37.07 2.34
2374 2398 2.863809 CCCTAATGGTGCATCCTTACC 58.136 52.381 0.00 0.00 37.07 2.85
2375 2399 2.443255 CCCTAATGGTGCATCCTTACCT 59.557 50.000 0.00 0.00 37.84 3.08
2376 2400 3.117512 CCCTAATGGTGCATCCTTACCTT 60.118 47.826 0.00 0.00 37.84 3.50
2377 2401 3.885297 CCTAATGGTGCATCCTTACCTTG 59.115 47.826 0.00 0.00 37.84 3.61
2378 2402 3.737559 AATGGTGCATCCTTACCTTGA 57.262 42.857 0.00 0.00 37.84 3.02
2379 2403 3.737559 ATGGTGCATCCTTACCTTGAA 57.262 42.857 0.00 0.00 37.84 2.69
2380 2404 3.071874 TGGTGCATCCTTACCTTGAAG 57.928 47.619 0.00 0.00 37.84 3.02
2381 2405 2.375174 TGGTGCATCCTTACCTTGAAGT 59.625 45.455 0.00 0.00 37.84 3.01
2382 2406 3.181434 TGGTGCATCCTTACCTTGAAGTT 60.181 43.478 0.00 0.00 37.84 2.66
2383 2407 3.826729 GGTGCATCCTTACCTTGAAGTTT 59.173 43.478 0.00 0.00 34.11 2.66
2384 2408 4.321230 GGTGCATCCTTACCTTGAAGTTTG 60.321 45.833 0.00 0.00 34.11 2.93
2385 2409 4.518970 GTGCATCCTTACCTTGAAGTTTGA 59.481 41.667 0.00 0.00 0.00 2.69
2386 2410 4.761739 TGCATCCTTACCTTGAAGTTTGAG 59.238 41.667 0.00 0.00 0.00 3.02
2387 2411 5.003804 GCATCCTTACCTTGAAGTTTGAGA 58.996 41.667 0.00 0.00 0.00 3.27
2388 2412 5.473504 GCATCCTTACCTTGAAGTTTGAGAA 59.526 40.000 0.00 0.00 0.00 2.87
2389 2413 6.016276 GCATCCTTACCTTGAAGTTTGAGAAA 60.016 38.462 0.00 0.00 0.00 2.52
2390 2414 7.309438 GCATCCTTACCTTGAAGTTTGAGAAAT 60.309 37.037 0.00 0.00 0.00 2.17
2391 2415 8.579863 CATCCTTACCTTGAAGTTTGAGAAATT 58.420 33.333 0.00 0.00 0.00 1.82
2392 2416 8.533569 TCCTTACCTTGAAGTTTGAGAAATTT 57.466 30.769 0.00 0.00 0.00 1.82
2393 2417 8.413229 TCCTTACCTTGAAGTTTGAGAAATTTG 58.587 33.333 0.00 0.00 0.00 2.32
2394 2418 7.169813 CCTTACCTTGAAGTTTGAGAAATTTGC 59.830 37.037 0.00 0.00 0.00 3.68
2395 2419 5.976458 ACCTTGAAGTTTGAGAAATTTGCA 58.024 33.333 0.00 0.00 0.00 4.08
2396 2420 5.812127 ACCTTGAAGTTTGAGAAATTTGCAC 59.188 36.000 0.00 0.00 0.00 4.57
2397 2421 5.234972 CCTTGAAGTTTGAGAAATTTGCACC 59.765 40.000 0.00 0.00 0.00 5.01
2398 2422 5.596836 TGAAGTTTGAGAAATTTGCACCT 57.403 34.783 0.00 0.00 0.00 4.00
2399 2423 5.350633 TGAAGTTTGAGAAATTTGCACCTG 58.649 37.500 0.00 0.00 0.00 4.00
2400 2424 5.126869 TGAAGTTTGAGAAATTTGCACCTGA 59.873 36.000 0.00 0.00 0.00 3.86
2401 2425 5.596836 AGTTTGAGAAATTTGCACCTGAA 57.403 34.783 0.00 0.00 0.00 3.02
2402 2426 5.351458 AGTTTGAGAAATTTGCACCTGAAC 58.649 37.500 0.00 0.00 0.00 3.18
2403 2427 5.127682 AGTTTGAGAAATTTGCACCTGAACT 59.872 36.000 0.00 0.00 0.00 3.01
2404 2428 4.572985 TGAGAAATTTGCACCTGAACTG 57.427 40.909 0.00 0.00 0.00 3.16
2405 2429 3.318839 TGAGAAATTTGCACCTGAACTGG 59.681 43.478 0.00 0.00 0.00 4.00
2406 2430 3.565307 AGAAATTTGCACCTGAACTGGA 58.435 40.909 0.00 0.00 0.00 3.86
2407 2431 3.319122 AGAAATTTGCACCTGAACTGGAC 59.681 43.478 0.00 0.00 0.00 4.02
2408 2432 2.664402 ATTTGCACCTGAACTGGACT 57.336 45.000 4.82 0.00 0.00 3.85
2409 2433 2.435372 TTTGCACCTGAACTGGACTT 57.565 45.000 4.82 0.00 0.00 3.01
2410 2434 3.569194 TTTGCACCTGAACTGGACTTA 57.431 42.857 4.82 0.00 0.00 2.24
2411 2435 3.569194 TTGCACCTGAACTGGACTTAA 57.431 42.857 4.82 0.00 0.00 1.85
2412 2436 3.569194 TGCACCTGAACTGGACTTAAA 57.431 42.857 4.82 0.00 0.00 1.52
2413 2437 3.476552 TGCACCTGAACTGGACTTAAAG 58.523 45.455 4.82 0.00 0.00 1.85
2414 2438 3.118038 TGCACCTGAACTGGACTTAAAGT 60.118 43.478 4.82 0.00 0.00 2.66
2415 2439 3.251004 GCACCTGAACTGGACTTAAAGTG 59.749 47.826 4.82 0.00 0.00 3.16
2416 2440 3.251004 CACCTGAACTGGACTTAAAGTGC 59.749 47.826 4.82 0.00 37.06 4.40
2417 2441 3.118038 ACCTGAACTGGACTTAAAGTGCA 60.118 43.478 0.00 0.00 44.42 4.57
2424 2448 4.503741 TGGACTTAAAGTGCAGCAAATC 57.496 40.909 0.00 0.00 41.73 2.17
2425 2449 3.888323 TGGACTTAAAGTGCAGCAAATCA 59.112 39.130 0.00 0.00 41.73 2.57
2426 2450 4.523943 TGGACTTAAAGTGCAGCAAATCAT 59.476 37.500 0.00 0.00 41.73 2.45
2427 2451 4.860907 GGACTTAAAGTGCAGCAAATCATG 59.139 41.667 0.00 0.00 36.49 3.07
2428 2452 8.933181 TGGACTTAAAGTGCAGCAAATCATGC 62.933 42.308 0.00 0.00 44.09 4.06
2440 2464 4.278678 CAAATCATGCCGTAGAAAGACC 57.721 45.455 0.00 0.00 0.00 3.85
2441 2465 3.627395 AATCATGCCGTAGAAAGACCA 57.373 42.857 0.00 0.00 0.00 4.02
2442 2466 3.627395 ATCATGCCGTAGAAAGACCAA 57.373 42.857 0.00 0.00 0.00 3.67
2443 2467 3.410631 TCATGCCGTAGAAAGACCAAA 57.589 42.857 0.00 0.00 0.00 3.28
2444 2468 3.071479 TCATGCCGTAGAAAGACCAAAC 58.929 45.455 0.00 0.00 0.00 2.93
2445 2469 2.623878 TGCCGTAGAAAGACCAAACA 57.376 45.000 0.00 0.00 0.00 2.83
2446 2470 2.920524 TGCCGTAGAAAGACCAAACAA 58.079 42.857 0.00 0.00 0.00 2.83
2447 2471 3.280295 TGCCGTAGAAAGACCAAACAAA 58.720 40.909 0.00 0.00 0.00 2.83
2448 2472 3.065648 TGCCGTAGAAAGACCAAACAAAC 59.934 43.478 0.00 0.00 0.00 2.93
2449 2473 3.847105 GCCGTAGAAAGACCAAACAAACG 60.847 47.826 0.00 0.00 0.00 3.60
2450 2474 3.285745 CGTAGAAAGACCAAACAAACGC 58.714 45.455 0.00 0.00 0.00 4.84
2451 2475 2.863401 AGAAAGACCAAACAAACGCC 57.137 45.000 0.00 0.00 0.00 5.68
2452 2476 2.096248 AGAAAGACCAAACAAACGCCA 58.904 42.857 0.00 0.00 0.00 5.69
2453 2477 2.494073 AGAAAGACCAAACAAACGCCAA 59.506 40.909 0.00 0.00 0.00 4.52
2454 2478 3.132111 AGAAAGACCAAACAAACGCCAAT 59.868 39.130 0.00 0.00 0.00 3.16
2455 2479 4.339814 AGAAAGACCAAACAAACGCCAATA 59.660 37.500 0.00 0.00 0.00 1.90
2456 2480 4.657436 AAGACCAAACAAACGCCAATAA 57.343 36.364 0.00 0.00 0.00 1.40
2457 2481 4.864704 AGACCAAACAAACGCCAATAAT 57.135 36.364 0.00 0.00 0.00 1.28
2458 2482 5.208463 AGACCAAACAAACGCCAATAATT 57.792 34.783 0.00 0.00 0.00 1.40
2459 2483 5.606505 AGACCAAACAAACGCCAATAATTT 58.393 33.333 0.00 0.00 0.00 1.82
2460 2484 5.694458 AGACCAAACAAACGCCAATAATTTC 59.306 36.000 0.00 0.00 0.00 2.17
2461 2485 5.606505 ACCAAACAAACGCCAATAATTTCT 58.393 33.333 0.00 0.00 0.00 2.52
2462 2486 6.750148 ACCAAACAAACGCCAATAATTTCTA 58.250 32.000 0.00 0.00 0.00 2.10
2463 2487 7.210873 ACCAAACAAACGCCAATAATTTCTAA 58.789 30.769 0.00 0.00 0.00 2.10
2464 2488 7.711339 ACCAAACAAACGCCAATAATTTCTAAA 59.289 29.630 0.00 0.00 0.00 1.85
2465 2489 8.007152 CCAAACAAACGCCAATAATTTCTAAAC 58.993 33.333 0.00 0.00 0.00 2.01
2466 2490 8.760569 CAAACAAACGCCAATAATTTCTAAACT 58.239 29.630 0.00 0.00 0.00 2.66
2467 2491 8.880878 AACAAACGCCAATAATTTCTAAACTT 57.119 26.923 0.00 0.00 0.00 2.66
2468 2492 9.968870 AACAAACGCCAATAATTTCTAAACTTA 57.031 25.926 0.00 0.00 0.00 2.24
2493 2517 6.593268 TTTAAAATGTGGTTACTTAGGGCC 57.407 37.500 0.00 0.00 0.00 5.80
2494 2518 4.397919 AAAATGTGGTTACTTAGGGCCT 57.602 40.909 12.58 12.58 0.00 5.19
2495 2519 4.397919 AAATGTGGTTACTTAGGGCCTT 57.602 40.909 13.45 0.00 0.00 4.35
2496 2520 5.523883 AAATGTGGTTACTTAGGGCCTTA 57.476 39.130 13.45 0.00 0.00 2.69
2497 2521 5.727243 AATGTGGTTACTTAGGGCCTTAT 57.273 39.130 13.45 0.00 0.00 1.73
2498 2522 5.727243 ATGTGGTTACTTAGGGCCTTATT 57.273 39.130 13.45 0.00 0.00 1.40
2499 2523 5.523883 TGTGGTTACTTAGGGCCTTATTT 57.476 39.130 13.45 0.00 0.00 1.40
2500 2524 6.639590 TGTGGTTACTTAGGGCCTTATTTA 57.360 37.500 13.45 0.00 0.00 1.40
2501 2525 7.215743 TGTGGTTACTTAGGGCCTTATTTAT 57.784 36.000 13.45 0.00 0.00 1.40
2502 2526 7.645002 TGTGGTTACTTAGGGCCTTATTTATT 58.355 34.615 13.45 0.00 0.00 1.40
2503 2527 8.780003 TGTGGTTACTTAGGGCCTTATTTATTA 58.220 33.333 13.45 0.00 0.00 0.98
2504 2528 9.631257 GTGGTTACTTAGGGCCTTATTTATTAA 57.369 33.333 13.45 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
149 150 2.876645 GCAGAGAACGGCGTCGAG 60.877 66.667 20.03 3.13 40.11 4.04
160 161 3.295273 ACGCTCACGGTGCAGAGA 61.295 61.111 2.51 0.00 46.04 3.10
216 217 1.975680 AGGATAAGAACACACGGTGGT 59.024 47.619 13.48 4.82 37.94 4.16
218 219 3.594603 AGAGGATAAGAACACACGGTG 57.405 47.619 6.58 6.58 39.75 4.94
219 220 3.833070 AGAAGAGGATAAGAACACACGGT 59.167 43.478 0.00 0.00 0.00 4.83
222 223 6.930731 AGAGAAGAAGAGGATAAGAACACAC 58.069 40.000 0.00 0.00 0.00 3.82
223 224 6.153680 GGAGAGAAGAAGAGGATAAGAACACA 59.846 42.308 0.00 0.00 0.00 3.72
239 241 3.390967 TCAATTGTGTGGTGGAGAGAAGA 59.609 43.478 5.13 0.00 0.00 2.87
272 274 5.045872 TGAGCATATGAACTGATCGAACAG 58.954 41.667 19.95 19.95 42.78 3.16
273 275 4.805719 GTGAGCATATGAACTGATCGAACA 59.194 41.667 6.97 0.00 31.77 3.18
274 276 5.046529 AGTGAGCATATGAACTGATCGAAC 58.953 41.667 6.97 0.00 31.77 3.95
275 277 5.045872 CAGTGAGCATATGAACTGATCGAA 58.954 41.667 20.54 0.00 42.09 3.71
276 278 4.614946 CAGTGAGCATATGAACTGATCGA 58.385 43.478 20.54 0.00 42.09 3.59
277 279 3.183976 GCAGTGAGCATATGAACTGATCG 59.816 47.826 25.65 9.50 42.09 3.69
278 280 4.728917 GCAGTGAGCATATGAACTGATC 57.271 45.455 25.65 12.87 42.09 2.92
295 297 6.992063 CTTACAAGGAAATCAGTATGCAGT 57.008 37.500 0.00 0.00 34.76 4.40
311 313 2.409975 TCTCCGCGAAAACCTTACAAG 58.590 47.619 8.23 0.00 0.00 3.16
357 359 2.681848 GCTAAAGCTCATGATGCACACT 59.318 45.455 16.20 3.96 38.21 3.55
367 369 2.292267 CATCCGGTTGCTAAAGCTCAT 58.708 47.619 0.00 0.00 42.66 2.90
375 377 2.093890 TCGTAGAACATCCGGTTGCTA 58.906 47.619 12.54 4.34 40.63 3.49
477 479 3.936203 ACCTCCGGCTGCGTGAAA 61.936 61.111 0.00 0.00 0.00 2.69
579 581 1.193874 GCGTAAAACGGGTCAGAGTTG 59.806 52.381 1.25 0.00 42.82 3.16
600 602 4.473199 TGAAGTTTCTGTACGAGATGACG 58.527 43.478 0.00 0.00 39.31 4.35
601 603 5.164041 GCTTGAAGTTTCTGTACGAGATGAC 60.164 44.000 0.00 0.00 0.00 3.06
689 705 9.935241 CATACTCTATGTTATACTCTTGGCATT 57.065 33.333 0.00 0.00 0.00 3.56
762 780 1.683790 CTACGTTACAGGCAGCGTGC 61.684 60.000 15.11 0.00 44.08 5.34
781 799 1.717194 TGAACGCGGGTCTGAAATAC 58.283 50.000 12.47 0.00 0.00 1.89
839 857 4.105733 ATCGTGGCGCGTCGTGTA 62.106 61.111 20.88 0.00 42.13 2.90
946 966 1.078426 GCTACGGTGTTGGATGGCT 60.078 57.895 0.00 0.00 0.00 4.75
964 984 1.069022 TCAACTCGTAAGTTCGACGGG 60.069 52.381 0.00 0.00 43.99 5.28
1302 1322 4.504916 CTCAGCCTGGCGACGGAG 62.505 72.222 13.96 14.48 39.98 4.63
1454 1474 0.822121 GTTGGGCCTCCTTGTTCGTT 60.822 55.000 4.53 0.00 0.00 3.85
1456 1476 2.325082 CGTTGGGCCTCCTTGTTCG 61.325 63.158 4.53 0.00 0.00 3.95
1562 1582 4.996122 CGTATTCTGGTAGGAGTAGATCGT 59.004 45.833 0.00 0.00 0.00 3.73
1567 1587 6.231951 TGATCTCGTATTCTGGTAGGAGTAG 58.768 44.000 0.00 0.00 37.66 2.57
1570 1590 5.621104 GCATGATCTCGTATTCTGGTAGGAG 60.621 48.000 0.00 0.00 37.73 3.69
1571 1591 4.218635 GCATGATCTCGTATTCTGGTAGGA 59.781 45.833 0.00 0.00 0.00 2.94
1572 1592 4.489810 GCATGATCTCGTATTCTGGTAGG 58.510 47.826 0.00 0.00 0.00 3.18
1611 1632 8.936864 ACCGATAATCTAGTTTGAACTTTCAAG 58.063 33.333 1.20 0.00 46.68 3.02
1614 1635 7.275123 ACGACCGATAATCTAGTTTGAACTTTC 59.725 37.037 1.20 0.00 40.37 2.62
1670 1693 5.069648 TCATCTGAAGCTGACCGATAATCTT 59.930 40.000 0.00 0.00 0.00 2.40
1774 1798 7.495934 TGAAAATCCTACGAATCAAAGAGGATC 59.504 37.037 2.34 0.00 44.53 3.36
1775 1799 7.338710 TGAAAATCCTACGAATCAAAGAGGAT 58.661 34.615 0.00 0.00 46.73 3.24
1776 1800 6.707290 TGAAAATCCTACGAATCAAAGAGGA 58.293 36.000 0.00 0.00 40.52 3.71
1777 1801 6.985188 TGAAAATCCTACGAATCAAAGAGG 57.015 37.500 0.00 0.00 0.00 3.69
1778 1802 9.118236 GTTTTGAAAATCCTACGAATCAAAGAG 57.882 33.333 0.00 0.00 0.00 2.85
1779 1803 7.801315 CGTTTTGAAAATCCTACGAATCAAAGA 59.199 33.333 0.00 0.00 0.00 2.52
1780 1804 7.589954 ACGTTTTGAAAATCCTACGAATCAAAG 59.410 33.333 6.15 0.00 33.60 2.77
1781 1805 7.419204 ACGTTTTGAAAATCCTACGAATCAAA 58.581 30.769 6.15 0.00 33.60 2.69
1782 1806 6.961576 ACGTTTTGAAAATCCTACGAATCAA 58.038 32.000 6.15 0.00 33.60 2.57
1783 1807 6.548441 ACGTTTTGAAAATCCTACGAATCA 57.452 33.333 6.15 0.00 33.60 2.57
1784 1808 8.385111 TCATACGTTTTGAAAATCCTACGAATC 58.615 33.333 6.15 0.00 33.60 2.52
1785 1809 8.259049 TCATACGTTTTGAAAATCCTACGAAT 57.741 30.769 6.15 0.00 33.60 3.34
1786 1810 7.655236 TCATACGTTTTGAAAATCCTACGAA 57.345 32.000 6.15 0.00 33.60 3.85
1787 1811 7.655236 TTCATACGTTTTGAAAATCCTACGA 57.345 32.000 10.22 0.00 30.44 3.43
1788 1812 9.976255 TTATTCATACGTTTTGAAAATCCTACG 57.024 29.630 15.00 0.00 36.72 3.51
1815 1839 5.508200 TGCCACTTTAATCTCACGTTTTT 57.492 34.783 0.00 0.00 0.00 1.94
1816 1840 5.009610 ACATGCCACTTTAATCTCACGTTTT 59.990 36.000 0.00 0.00 0.00 2.43
1817 1841 4.518970 ACATGCCACTTTAATCTCACGTTT 59.481 37.500 0.00 0.00 0.00 3.60
1818 1842 4.072131 ACATGCCACTTTAATCTCACGTT 58.928 39.130 0.00 0.00 0.00 3.99
1819 1843 3.674997 ACATGCCACTTTAATCTCACGT 58.325 40.909 0.00 0.00 0.00 4.49
1820 1844 3.684305 TGACATGCCACTTTAATCTCACG 59.316 43.478 0.00 0.00 0.00 4.35
1821 1845 5.587844 AGATGACATGCCACTTTAATCTCAC 59.412 40.000 0.00 0.00 0.00 3.51
1822 1846 5.748402 AGATGACATGCCACTTTAATCTCA 58.252 37.500 0.00 0.00 0.00 3.27
1823 1847 6.690194 AAGATGACATGCCACTTTAATCTC 57.310 37.500 0.00 0.00 0.00 2.75
1824 1848 8.579850 TTTAAGATGACATGCCACTTTAATCT 57.420 30.769 0.00 0.00 0.00 2.40
1825 1849 9.455847 GATTTAAGATGACATGCCACTTTAATC 57.544 33.333 13.98 13.98 33.19 1.75
1826 1850 8.416329 GGATTTAAGATGACATGCCACTTTAAT 58.584 33.333 0.00 1.09 0.00 1.40
1827 1851 7.615365 AGGATTTAAGATGACATGCCACTTTAA 59.385 33.333 0.00 0.00 0.00 1.52
1828 1852 7.118723 AGGATTTAAGATGACATGCCACTTTA 58.881 34.615 0.00 0.00 0.00 1.85
1829 1853 5.954150 AGGATTTAAGATGACATGCCACTTT 59.046 36.000 0.00 0.00 0.00 2.66
1830 1854 5.513233 AGGATTTAAGATGACATGCCACTT 58.487 37.500 0.00 0.00 0.00 3.16
1831 1855 5.121380 AGGATTTAAGATGACATGCCACT 57.879 39.130 0.00 0.00 0.00 4.00
1832 1856 6.942532 TTAGGATTTAAGATGACATGCCAC 57.057 37.500 0.00 0.00 0.00 5.01
1833 1857 7.289310 TCATTAGGATTTAAGATGACATGCCA 58.711 34.615 0.00 0.00 0.00 4.92
1834 1858 7.750229 TCATTAGGATTTAAGATGACATGCC 57.250 36.000 0.00 0.00 0.00 4.40
1835 1859 9.622004 CAATCATTAGGATTTAAGATGACATGC 57.378 33.333 0.00 0.00 43.76 4.06
1855 1879 9.872721 TGCACAATCAAACATTTATACAATCAT 57.127 25.926 0.00 0.00 0.00 2.45
1856 1880 9.872721 ATGCACAATCAAACATTTATACAATCA 57.127 25.926 0.00 0.00 0.00 2.57
1885 1909 7.284716 ACCTCTTTGAAAGAATCCTACGTTTTT 59.715 33.333 9.15 0.00 37.02 1.94
1886 1910 6.771267 ACCTCTTTGAAAGAATCCTACGTTTT 59.229 34.615 9.15 0.00 37.02 2.43
1887 1911 6.296803 ACCTCTTTGAAAGAATCCTACGTTT 58.703 36.000 9.15 0.00 37.02 3.60
1888 1912 5.866207 ACCTCTTTGAAAGAATCCTACGTT 58.134 37.500 9.15 0.00 37.02 3.99
1889 1913 5.485209 ACCTCTTTGAAAGAATCCTACGT 57.515 39.130 9.15 0.00 37.02 3.57
1890 1914 6.426937 TCAAACCTCTTTGAAAGAATCCTACG 59.573 38.462 9.15 0.00 42.34 3.51
1891 1915 7.445707 ACTCAAACCTCTTTGAAAGAATCCTAC 59.554 37.037 9.15 0.00 44.18 3.18
1892 1916 7.445402 CACTCAAACCTCTTTGAAAGAATCCTA 59.555 37.037 9.15 0.00 44.18 2.94
1893 1917 6.264067 CACTCAAACCTCTTTGAAAGAATCCT 59.736 38.462 9.15 0.00 44.18 3.24
1894 1918 6.442112 CACTCAAACCTCTTTGAAAGAATCC 58.558 40.000 9.15 0.00 44.18 3.01
1895 1919 6.263168 TCCACTCAAACCTCTTTGAAAGAATC 59.737 38.462 9.15 0.00 44.18 2.52
1896 1920 6.129179 TCCACTCAAACCTCTTTGAAAGAAT 58.871 36.000 9.15 0.00 44.18 2.40
1897 1921 5.505780 TCCACTCAAACCTCTTTGAAAGAA 58.494 37.500 9.15 0.00 44.18 2.52
1898 1922 5.110814 TCCACTCAAACCTCTTTGAAAGA 57.889 39.130 7.49 7.49 44.18 2.52
1899 1923 4.884164 ACTCCACTCAAACCTCTTTGAAAG 59.116 41.667 0.00 0.00 44.18 2.62
1900 1924 4.855340 ACTCCACTCAAACCTCTTTGAAA 58.145 39.130 0.00 0.00 44.18 2.69
1901 1925 4.164221 AGACTCCACTCAAACCTCTTTGAA 59.836 41.667 0.00 0.00 44.18 2.69
1902 1926 3.711704 AGACTCCACTCAAACCTCTTTGA 59.288 43.478 0.00 0.00 42.93 2.69
1903 1927 4.078639 AGACTCCACTCAAACCTCTTTG 57.921 45.455 0.00 0.00 38.56 2.77
1904 1928 4.902448 ACTAGACTCCACTCAAACCTCTTT 59.098 41.667 0.00 0.00 0.00 2.52
1905 1929 4.282195 CACTAGACTCCACTCAAACCTCTT 59.718 45.833 0.00 0.00 0.00 2.85
1906 1930 3.829601 CACTAGACTCCACTCAAACCTCT 59.170 47.826 0.00 0.00 0.00 3.69
1907 1931 3.615351 GCACTAGACTCCACTCAAACCTC 60.615 52.174 0.00 0.00 0.00 3.85
1908 1932 2.300437 GCACTAGACTCCACTCAAACCT 59.700 50.000 0.00 0.00 0.00 3.50
1909 1933 2.037251 TGCACTAGACTCCACTCAAACC 59.963 50.000 0.00 0.00 0.00 3.27
1910 1934 3.386768 TGCACTAGACTCCACTCAAAC 57.613 47.619 0.00 0.00 0.00 2.93
1911 1935 4.415881 TTTGCACTAGACTCCACTCAAA 57.584 40.909 0.00 0.00 0.00 2.69
1912 1936 4.040339 TCATTTGCACTAGACTCCACTCAA 59.960 41.667 0.00 0.00 0.00 3.02
1913 1937 3.578282 TCATTTGCACTAGACTCCACTCA 59.422 43.478 0.00 0.00 0.00 3.41
1914 1938 4.193826 TCATTTGCACTAGACTCCACTC 57.806 45.455 0.00 0.00 0.00 3.51
1915 1939 4.623932 TTCATTTGCACTAGACTCCACT 57.376 40.909 0.00 0.00 0.00 4.00
1916 1940 4.937620 TGATTCATTTGCACTAGACTCCAC 59.062 41.667 0.00 0.00 0.00 4.02
1917 1941 5.164620 TGATTCATTTGCACTAGACTCCA 57.835 39.130 0.00 0.00 0.00 3.86
1918 1942 7.658982 TCATATGATTCATTTGCACTAGACTCC 59.341 37.037 4.14 0.00 0.00 3.85
1919 1943 8.599055 TCATATGATTCATTTGCACTAGACTC 57.401 34.615 4.14 0.00 0.00 3.36
1920 1944 8.969260 TTCATATGATTCATTTGCACTAGACT 57.031 30.769 6.17 0.00 0.00 3.24
1956 1980 6.262496 TGTTTGATTCGTGGTATTGTAAACCA 59.738 34.615 0.00 0.00 44.75 3.67
1957 1981 6.670233 TGTTTGATTCGTGGTATTGTAAACC 58.330 36.000 0.00 0.00 37.53 3.27
1958 1982 7.113825 GGTTGTTTGATTCGTGGTATTGTAAAC 59.886 37.037 0.00 0.00 0.00 2.01
1959 1983 7.013464 AGGTTGTTTGATTCGTGGTATTGTAAA 59.987 33.333 0.00 0.00 0.00 2.01
1960 1984 6.487331 AGGTTGTTTGATTCGTGGTATTGTAA 59.513 34.615 0.00 0.00 0.00 2.41
1961 1985 5.998981 AGGTTGTTTGATTCGTGGTATTGTA 59.001 36.000 0.00 0.00 0.00 2.41
1962 1986 4.825085 AGGTTGTTTGATTCGTGGTATTGT 59.175 37.500 0.00 0.00 0.00 2.71
1963 1987 5.371115 AGGTTGTTTGATTCGTGGTATTG 57.629 39.130 0.00 0.00 0.00 1.90
1964 1988 5.998981 TGTAGGTTGTTTGATTCGTGGTATT 59.001 36.000 0.00 0.00 0.00 1.89
1965 1989 5.553123 TGTAGGTTGTTTGATTCGTGGTAT 58.447 37.500 0.00 0.00 0.00 2.73
1966 1990 4.958509 TGTAGGTTGTTTGATTCGTGGTA 58.041 39.130 0.00 0.00 0.00 3.25
1967 1991 3.811083 TGTAGGTTGTTTGATTCGTGGT 58.189 40.909 0.00 0.00 0.00 4.16
1968 1992 5.064707 CCTATGTAGGTTGTTTGATTCGTGG 59.935 44.000 0.00 0.00 38.69 4.94
1969 1993 5.872617 TCCTATGTAGGTTGTTTGATTCGTG 59.127 40.000 6.01 0.00 44.02 4.35
1970 1994 6.045072 TCCTATGTAGGTTGTTTGATTCGT 57.955 37.500 6.01 0.00 44.02 3.85
1971 1995 6.338146 TCTCCTATGTAGGTTGTTTGATTCG 58.662 40.000 6.01 0.00 44.02 3.34
1972 1996 8.561738 TTTCTCCTATGTAGGTTGTTTGATTC 57.438 34.615 6.01 0.00 44.02 2.52
1973 1997 9.533831 AATTTCTCCTATGTAGGTTGTTTGATT 57.466 29.630 6.01 0.00 44.02 2.57
1974 1998 9.178758 GAATTTCTCCTATGTAGGTTGTTTGAT 57.821 33.333 6.01 0.00 44.02 2.57
1975 1999 8.160765 TGAATTTCTCCTATGTAGGTTGTTTGA 58.839 33.333 6.01 0.00 44.02 2.69
1976 2000 8.335532 TGAATTTCTCCTATGTAGGTTGTTTG 57.664 34.615 6.01 0.00 44.02 2.93
1979 2003 9.838339 CTTATGAATTTCTCCTATGTAGGTTGT 57.162 33.333 6.01 0.00 44.02 3.32
1980 2004 9.277783 CCTTATGAATTTCTCCTATGTAGGTTG 57.722 37.037 6.01 1.77 44.02 3.77
1981 2005 9.225682 TCCTTATGAATTTCTCCTATGTAGGTT 57.774 33.333 6.01 0.00 44.02 3.50
1982 2006 8.798975 TCCTTATGAATTTCTCCTATGTAGGT 57.201 34.615 6.01 0.00 44.02 3.08
1983 2007 8.875168 ACTCCTTATGAATTTCTCCTATGTAGG 58.125 37.037 0.00 0.00 45.02 3.18
1986 2010 9.661954 TCTACTCCTTATGAATTTCTCCTATGT 57.338 33.333 0.00 0.00 0.00 2.29
1990 2014 8.655901 GGATTCTACTCCTTATGAATTTCTCCT 58.344 37.037 0.00 0.00 32.18 3.69
1991 2015 8.655901 AGGATTCTACTCCTTATGAATTTCTCC 58.344 37.037 0.00 0.00 43.33 3.71
1992 2016 9.705290 GAGGATTCTACTCCTTATGAATTTCTC 57.295 37.037 0.00 0.00 45.89 2.87
2006 2030 2.403561 AGGCCTTGGAGGATTCTACTC 58.596 52.381 0.00 0.00 37.67 2.59
2007 2031 2.577772 AGGCCTTGGAGGATTCTACT 57.422 50.000 0.00 0.00 37.67 2.57
2008 2032 2.774809 AGAAGGCCTTGGAGGATTCTAC 59.225 50.000 26.25 3.19 39.60 2.59
2009 2033 3.136641 AGAAGGCCTTGGAGGATTCTA 57.863 47.619 26.25 0.00 39.60 2.10
2010 2034 1.978361 AGAAGGCCTTGGAGGATTCT 58.022 50.000 26.25 8.31 37.67 2.40
2011 2035 2.757314 CAAAGAAGGCCTTGGAGGATTC 59.243 50.000 26.25 5.58 37.67 2.52
2012 2036 2.558350 CCAAAGAAGGCCTTGGAGGATT 60.558 50.000 26.25 5.49 37.67 3.01
2013 2037 1.006400 CCAAAGAAGGCCTTGGAGGAT 59.994 52.381 26.25 0.00 37.67 3.24
2014 2038 0.405585 CCAAAGAAGGCCTTGGAGGA 59.594 55.000 26.25 0.00 37.67 3.71
2015 2039 0.113190 ACCAAAGAAGGCCTTGGAGG 59.887 55.000 26.25 20.44 38.80 4.30
2016 2040 2.001076 AACCAAAGAAGGCCTTGGAG 57.999 50.000 26.25 9.76 34.79 3.86
2017 2041 2.038659 CAAACCAAAGAAGGCCTTGGA 58.961 47.619 26.25 0.00 34.79 3.53
2018 2042 1.070601 CCAAACCAAAGAAGGCCTTGG 59.929 52.381 26.25 21.52 38.11 3.61
2019 2043 2.036346 CTCCAAACCAAAGAAGGCCTTG 59.964 50.000 26.25 10.82 34.79 3.61
2020 2044 2.319844 CTCCAAACCAAAGAAGGCCTT 58.680 47.619 20.65 20.65 36.47 4.35
2021 2045 1.481242 CCTCCAAACCAAAGAAGGCCT 60.481 52.381 0.00 0.00 0.00 5.19
2022 2046 0.969149 CCTCCAAACCAAAGAAGGCC 59.031 55.000 0.00 0.00 0.00 5.19
2023 2047 1.995376 TCCTCCAAACCAAAGAAGGC 58.005 50.000 0.00 0.00 0.00 4.35
2024 2048 5.551305 AAATTCCTCCAAACCAAAGAAGG 57.449 39.130 0.00 0.00 0.00 3.46
2025 2049 9.860898 CTATAAAATTCCTCCAAACCAAAGAAG 57.139 33.333 0.00 0.00 0.00 2.85
2026 2050 9.594936 TCTATAAAATTCCTCCAAACCAAAGAA 57.405 29.630 0.00 0.00 0.00 2.52
2027 2051 9.594936 TTCTATAAAATTCCTCCAAACCAAAGA 57.405 29.630 0.00 0.00 0.00 2.52
2073 2097 7.118496 TGAACCAAATGGCTCTAAAGAAAAA 57.882 32.000 0.00 0.00 39.32 1.94
2074 2098 6.723298 TGAACCAAATGGCTCTAAAGAAAA 57.277 33.333 0.00 0.00 39.32 2.29
2075 2099 6.916360 ATGAACCAAATGGCTCTAAAGAAA 57.084 33.333 0.00 0.00 39.32 2.52
2076 2100 7.402054 TCTATGAACCAAATGGCTCTAAAGAA 58.598 34.615 0.00 0.00 39.32 2.52
2077 2101 6.957631 TCTATGAACCAAATGGCTCTAAAGA 58.042 36.000 0.00 0.00 39.32 2.52
2078 2102 7.630242 TTCTATGAACCAAATGGCTCTAAAG 57.370 36.000 0.00 0.00 39.32 1.85
2079 2103 7.361713 CGTTTCTATGAACCAAATGGCTCTAAA 60.362 37.037 0.00 0.00 39.32 1.85
2080 2104 6.093495 CGTTTCTATGAACCAAATGGCTCTAA 59.907 38.462 0.00 0.00 39.32 2.10
2081 2105 5.584649 CGTTTCTATGAACCAAATGGCTCTA 59.415 40.000 0.00 0.00 39.32 2.43
2082 2106 4.396166 CGTTTCTATGAACCAAATGGCTCT 59.604 41.667 0.00 0.00 39.32 4.09
2083 2107 4.438744 CCGTTTCTATGAACCAAATGGCTC 60.439 45.833 0.00 0.00 39.32 4.70
2084 2108 3.443681 CCGTTTCTATGAACCAAATGGCT 59.556 43.478 0.00 0.00 39.32 4.75
2085 2109 3.442273 TCCGTTTCTATGAACCAAATGGC 59.558 43.478 0.00 0.00 36.49 4.40
2086 2110 5.835113 ATCCGTTTCTATGAACCAAATGG 57.165 39.130 0.00 0.00 37.48 3.16
2087 2111 6.095440 AGGAATCCGTTTCTATGAACCAAATG 59.905 38.462 0.00 0.00 34.56 2.32
2088 2112 6.187682 AGGAATCCGTTTCTATGAACCAAAT 58.812 36.000 0.00 0.00 34.56 2.32
2089 2113 5.566469 AGGAATCCGTTTCTATGAACCAAA 58.434 37.500 0.00 0.00 34.56 3.28
2090 2114 5.174037 AGGAATCCGTTTCTATGAACCAA 57.826 39.130 0.00 0.00 34.56 3.67
2091 2115 4.837093 AGGAATCCGTTTCTATGAACCA 57.163 40.909 0.00 0.00 34.56 3.67
2092 2116 6.427242 GGAATAGGAATCCGTTTCTATGAACC 59.573 42.308 14.02 0.00 36.46 3.62
2093 2117 7.217906 AGGAATAGGAATCCGTTTCTATGAAC 58.782 38.462 14.02 1.24 42.03 3.18
2094 2118 7.374975 AGGAATAGGAATCCGTTTCTATGAA 57.625 36.000 14.02 0.00 42.03 2.57
2095 2119 6.996180 AGGAATAGGAATCCGTTTCTATGA 57.004 37.500 14.02 0.00 42.03 2.15
2096 2120 7.599245 GTGTAGGAATAGGAATCCGTTTCTATG 59.401 40.741 14.02 0.00 42.03 2.23
2097 2121 7.289317 TGTGTAGGAATAGGAATCCGTTTCTAT 59.711 37.037 14.02 8.16 42.03 1.98
2098 2122 6.608405 TGTGTAGGAATAGGAATCCGTTTCTA 59.392 38.462 14.02 9.66 42.03 2.10
2099 2123 5.424252 TGTGTAGGAATAGGAATCCGTTTCT 59.576 40.000 14.02 10.45 42.03 2.52
2100 2124 5.667466 TGTGTAGGAATAGGAATCCGTTTC 58.333 41.667 8.22 8.22 42.03 2.78
2101 2125 5.671493 CTGTGTAGGAATAGGAATCCGTTT 58.329 41.667 0.00 0.00 42.03 3.60
2102 2126 5.277857 CTGTGTAGGAATAGGAATCCGTT 57.722 43.478 0.00 0.00 42.03 4.44
2103 2127 4.939052 CTGTGTAGGAATAGGAATCCGT 57.061 45.455 0.00 0.00 42.03 4.69
2124 2148 7.939039 TGAAATGTGGAGGATATGAACTAATCC 59.061 37.037 0.00 0.00 41.77 3.01
2125 2149 8.908786 TGAAATGTGGAGGATATGAACTAATC 57.091 34.615 0.00 0.00 0.00 1.75
2126 2150 9.699410 TTTGAAATGTGGAGGATATGAACTAAT 57.301 29.630 0.00 0.00 0.00 1.73
2127 2151 9.177608 CTTTGAAATGTGGAGGATATGAACTAA 57.822 33.333 0.00 0.00 0.00 2.24
2128 2152 8.548025 TCTTTGAAATGTGGAGGATATGAACTA 58.452 33.333 0.00 0.00 0.00 2.24
2129 2153 7.405292 TCTTTGAAATGTGGAGGATATGAACT 58.595 34.615 0.00 0.00 0.00 3.01
2130 2154 7.630242 TCTTTGAAATGTGGAGGATATGAAC 57.370 36.000 0.00 0.00 0.00 3.18
2131 2155 8.648698 TTTCTTTGAAATGTGGAGGATATGAA 57.351 30.769 0.00 0.00 0.00 2.57
2132 2156 8.648698 TTTTCTTTGAAATGTGGAGGATATGA 57.351 30.769 0.00 0.00 0.00 2.15
2133 2157 9.880157 AATTTTCTTTGAAATGTGGAGGATATG 57.120 29.630 0.00 0.00 30.06 1.78
2137 2161 9.541143 GTTTAATTTTCTTTGAAATGTGGAGGA 57.459 29.630 0.00 0.00 30.06 3.71
2138 2162 9.323985 TGTTTAATTTTCTTTGAAATGTGGAGG 57.676 29.630 0.00 0.00 30.06 4.30
2188 2212 4.390297 TGTCATTTGTTCGCATCATACGAA 59.610 37.500 0.00 0.00 46.45 3.85
2189 2213 3.929610 TGTCATTTGTTCGCATCATACGA 59.070 39.130 0.00 0.00 37.86 3.43
2190 2214 4.257536 TGTCATTTGTTCGCATCATACG 57.742 40.909 0.00 0.00 0.00 3.06
2191 2215 7.510428 AAAATGTCATTTGTTCGCATCATAC 57.490 32.000 11.54 0.00 31.77 2.39
2225 2249 9.716531 CATGCATCTTAAATCCTATGAGTAAGA 57.283 33.333 0.00 6.48 36.37 2.10
2226 2250 9.499479 ACATGCATCTTAAATCCTATGAGTAAG 57.501 33.333 0.00 0.00 0.00 2.34
2227 2251 9.494271 GACATGCATCTTAAATCCTATGAGTAA 57.506 33.333 0.00 0.00 0.00 2.24
2228 2252 8.650490 TGACATGCATCTTAAATCCTATGAGTA 58.350 33.333 0.00 0.00 0.00 2.59
2229 2253 7.512130 TGACATGCATCTTAAATCCTATGAGT 58.488 34.615 0.00 0.00 0.00 3.41
2230 2254 7.974482 TGACATGCATCTTAAATCCTATGAG 57.026 36.000 0.00 0.00 0.00 2.90
2245 2269 8.162085 ACTTATAGGAAATGAGATGACATGCAT 58.838 33.333 0.00 0.00 40.77 3.96
2246 2270 7.512130 ACTTATAGGAAATGAGATGACATGCA 58.488 34.615 0.00 0.00 0.00 3.96
2247 2271 7.976135 ACTTATAGGAAATGAGATGACATGC 57.024 36.000 0.00 0.00 0.00 4.06
2260 2284 9.538508 GCGTAGGAATAAGAAACTTATAGGAAA 57.461 33.333 4.76 0.00 0.00 3.13
2261 2285 8.698210 TGCGTAGGAATAAGAAACTTATAGGAA 58.302 33.333 4.76 0.00 0.00 3.36
2262 2286 8.139989 GTGCGTAGGAATAAGAAACTTATAGGA 58.860 37.037 4.76 0.00 0.00 2.94
2263 2287 7.384387 GGTGCGTAGGAATAAGAAACTTATAGG 59.616 40.741 4.76 0.00 0.00 2.57
2264 2288 7.114529 CGGTGCGTAGGAATAAGAAACTTATAG 59.885 40.741 4.76 0.00 0.00 1.31
2265 2289 6.919662 CGGTGCGTAGGAATAAGAAACTTATA 59.080 38.462 4.76 0.00 0.00 0.98
2266 2290 5.751990 CGGTGCGTAGGAATAAGAAACTTAT 59.248 40.000 0.00 0.00 0.00 1.73
2267 2291 5.104374 CGGTGCGTAGGAATAAGAAACTTA 58.896 41.667 0.00 0.00 0.00 2.24
2268 2292 3.930848 CGGTGCGTAGGAATAAGAAACTT 59.069 43.478 0.00 0.00 0.00 2.66
2269 2293 3.056322 ACGGTGCGTAGGAATAAGAAACT 60.056 43.478 0.00 0.00 38.73 2.66
2270 2294 3.256558 ACGGTGCGTAGGAATAAGAAAC 58.743 45.455 0.00 0.00 38.73 2.78
2271 2295 3.194116 AGACGGTGCGTAGGAATAAGAAA 59.806 43.478 0.00 0.00 41.37 2.52
2272 2296 2.756760 AGACGGTGCGTAGGAATAAGAA 59.243 45.455 0.00 0.00 41.37 2.52
2273 2297 2.098607 CAGACGGTGCGTAGGAATAAGA 59.901 50.000 0.00 0.00 41.37 2.10
2274 2298 2.460918 CAGACGGTGCGTAGGAATAAG 58.539 52.381 0.00 0.00 41.37 1.73
2275 2299 1.470285 GCAGACGGTGCGTAGGAATAA 60.470 52.381 0.00 0.00 43.99 1.40
2276 2300 0.101759 GCAGACGGTGCGTAGGAATA 59.898 55.000 0.00 0.00 43.99 1.75
2277 2301 1.153628 GCAGACGGTGCGTAGGAAT 60.154 57.895 0.00 0.00 43.99 3.01
2278 2302 2.260434 GCAGACGGTGCGTAGGAA 59.740 61.111 0.00 0.00 43.99 3.36
2286 2310 0.735978 TCATACGCTTGCAGACGGTG 60.736 55.000 13.96 11.74 0.00 4.94
2287 2311 0.037697 TTCATACGCTTGCAGACGGT 60.038 50.000 13.96 1.86 0.00 4.83
2288 2312 0.370273 GTTCATACGCTTGCAGACGG 59.630 55.000 13.96 0.00 0.00 4.79
2289 2313 0.370273 GGTTCATACGCTTGCAGACG 59.630 55.000 8.69 8.69 0.00 4.18
2290 2314 1.438651 TGGTTCATACGCTTGCAGAC 58.561 50.000 0.00 0.00 0.00 3.51
2291 2315 2.177394 TTGGTTCATACGCTTGCAGA 57.823 45.000 0.00 0.00 0.00 4.26
2292 2316 2.483877 TCTTTGGTTCATACGCTTGCAG 59.516 45.455 0.00 0.00 0.00 4.41
2293 2317 2.499197 TCTTTGGTTCATACGCTTGCA 58.501 42.857 0.00 0.00 0.00 4.08
2294 2318 3.492313 CTTCTTTGGTTCATACGCTTGC 58.508 45.455 0.00 0.00 0.00 4.01
2295 2319 3.670627 GCCTTCTTTGGTTCATACGCTTG 60.671 47.826 0.00 0.00 0.00 4.01
2296 2320 2.488153 GCCTTCTTTGGTTCATACGCTT 59.512 45.455 0.00 0.00 0.00 4.68
2297 2321 2.084546 GCCTTCTTTGGTTCATACGCT 58.915 47.619 0.00 0.00 0.00 5.07
2298 2322 1.132453 GGCCTTCTTTGGTTCATACGC 59.868 52.381 0.00 0.00 0.00 4.42
2299 2323 1.743394 GGGCCTTCTTTGGTTCATACG 59.257 52.381 0.84 0.00 0.00 3.06
2300 2324 2.802719 TGGGCCTTCTTTGGTTCATAC 58.197 47.619 4.53 0.00 0.00 2.39
2301 2325 3.534357 TTGGGCCTTCTTTGGTTCATA 57.466 42.857 4.53 0.00 0.00 2.15
2302 2326 2.397044 TTGGGCCTTCTTTGGTTCAT 57.603 45.000 4.53 0.00 0.00 2.57
2303 2327 2.166907 TTTGGGCCTTCTTTGGTTCA 57.833 45.000 4.53 0.00 0.00 3.18
2304 2328 3.769739 ATTTTGGGCCTTCTTTGGTTC 57.230 42.857 4.53 0.00 0.00 3.62
2305 2329 3.181445 GGAATTTTGGGCCTTCTTTGGTT 60.181 43.478 4.53 0.00 0.00 3.67
2306 2330 2.371841 GGAATTTTGGGCCTTCTTTGGT 59.628 45.455 4.53 0.00 0.00 3.67
2307 2331 2.639347 AGGAATTTTGGGCCTTCTTTGG 59.361 45.455 4.53 0.00 0.00 3.28
2308 2332 3.580022 AGAGGAATTTTGGGCCTTCTTTG 59.420 43.478 4.53 0.00 30.70 2.77
2309 2333 3.580022 CAGAGGAATTTTGGGCCTTCTTT 59.420 43.478 4.53 0.00 30.70 2.52
2310 2334 3.168292 CAGAGGAATTTTGGGCCTTCTT 58.832 45.455 4.53 0.00 30.70 2.52
2311 2335 2.379907 TCAGAGGAATTTTGGGCCTTCT 59.620 45.455 4.53 0.00 30.70 2.85
2312 2336 2.757314 CTCAGAGGAATTTTGGGCCTTC 59.243 50.000 4.53 0.00 30.70 3.46
2313 2337 2.379907 TCTCAGAGGAATTTTGGGCCTT 59.620 45.455 4.53 0.00 30.70 4.35
2314 2338 1.995542 TCTCAGAGGAATTTTGGGCCT 59.004 47.619 4.53 0.00 33.97 5.19
2315 2339 2.514458 TCTCAGAGGAATTTTGGGCC 57.486 50.000 0.00 0.00 0.00 5.80
2316 2340 3.382865 GGATTCTCAGAGGAATTTTGGGC 59.617 47.826 0.00 0.00 36.24 5.36
2317 2341 4.864726 AGGATTCTCAGAGGAATTTTGGG 58.135 43.478 0.00 0.00 36.24 4.12
2318 2342 6.435277 TCAAAGGATTCTCAGAGGAATTTTGG 59.565 38.462 0.00 0.00 35.87 3.28
2319 2343 7.458409 TCAAAGGATTCTCAGAGGAATTTTG 57.542 36.000 0.00 2.65 36.16 2.44
2320 2344 8.661752 ATTCAAAGGATTCTCAGAGGAATTTT 57.338 30.769 0.00 0.00 36.24 1.82
2321 2345 7.892241 TGATTCAAAGGATTCTCAGAGGAATTT 59.108 33.333 0.00 0.00 36.24 1.82
2322 2346 7.408543 TGATTCAAAGGATTCTCAGAGGAATT 58.591 34.615 0.00 0.00 36.24 2.17
2323 2347 6.966751 TGATTCAAAGGATTCTCAGAGGAAT 58.033 36.000 0.00 0.00 38.47 3.01
2324 2348 6.378661 TGATTCAAAGGATTCTCAGAGGAA 57.621 37.500 0.00 0.00 0.00 3.36
2325 2349 6.378661 TTGATTCAAAGGATTCTCAGAGGA 57.621 37.500 0.00 0.00 0.00 3.71
2326 2350 7.086230 CTTTGATTCAAAGGATTCTCAGAGG 57.914 40.000 25.14 2.45 44.75 3.69
2337 2361 8.937059 ACCATTAGGGCTTCTTTGATTCAAAGG 61.937 40.741 29.61 19.59 44.54 3.11
2338 2362 6.071165 ACCATTAGGGCTTCTTTGATTCAAAG 60.071 38.462 26.35 26.35 45.16 2.77
2339 2363 5.779771 ACCATTAGGGCTTCTTTGATTCAAA 59.220 36.000 11.19 11.19 42.05 2.69
2340 2364 5.185635 CACCATTAGGGCTTCTTTGATTCAA 59.814 40.000 0.00 0.00 42.05 2.69
2341 2365 4.706476 CACCATTAGGGCTTCTTTGATTCA 59.294 41.667 0.00 0.00 42.05 2.57
2342 2366 4.440663 GCACCATTAGGGCTTCTTTGATTC 60.441 45.833 0.00 0.00 42.05 2.52
2343 2367 3.448660 GCACCATTAGGGCTTCTTTGATT 59.551 43.478 0.00 0.00 42.05 2.57
2344 2368 3.026694 GCACCATTAGGGCTTCTTTGAT 58.973 45.455 0.00 0.00 42.05 2.57
2345 2369 2.224992 TGCACCATTAGGGCTTCTTTGA 60.225 45.455 0.00 0.00 42.05 2.69
2346 2370 2.170166 TGCACCATTAGGGCTTCTTTG 58.830 47.619 0.00 0.00 42.05 2.77
2347 2371 2.603075 TGCACCATTAGGGCTTCTTT 57.397 45.000 0.00 0.00 42.05 2.52
2348 2372 2.659428 GATGCACCATTAGGGCTTCTT 58.341 47.619 0.00 0.00 42.05 2.52
2349 2373 1.133668 GGATGCACCATTAGGGCTTCT 60.134 52.381 0.00 0.00 42.05 2.85
2350 2374 1.133668 AGGATGCACCATTAGGGCTTC 60.134 52.381 7.86 0.00 42.05 3.86
2351 2375 0.929244 AGGATGCACCATTAGGGCTT 59.071 50.000 7.86 0.00 42.05 4.35
2352 2376 0.929244 AAGGATGCACCATTAGGGCT 59.071 50.000 7.86 0.00 42.05 5.19
2353 2377 2.230660 GTAAGGATGCACCATTAGGGC 58.769 52.381 7.86 0.00 42.05 5.19
2354 2378 2.443255 AGGTAAGGATGCACCATTAGGG 59.557 50.000 7.86 0.00 42.04 3.53
2355 2379 3.864789 AGGTAAGGATGCACCATTAGG 57.135 47.619 7.86 0.00 42.04 2.69
2356 2380 4.780815 TCAAGGTAAGGATGCACCATTAG 58.219 43.478 7.86 0.00 42.04 1.73
2357 2381 4.853468 TCAAGGTAAGGATGCACCATTA 57.147 40.909 7.86 0.00 42.04 1.90
2358 2382 3.737559 TCAAGGTAAGGATGCACCATT 57.262 42.857 7.86 0.00 42.04 3.16
2359 2383 3.010584 ACTTCAAGGTAAGGATGCACCAT 59.989 43.478 7.86 0.00 42.04 3.55
2360 2384 2.375174 ACTTCAAGGTAAGGATGCACCA 59.625 45.455 7.86 0.00 42.04 4.17
2361 2385 3.073274 ACTTCAAGGTAAGGATGCACC 57.927 47.619 0.00 0.00 39.35 5.01
2362 2386 4.518970 TCAAACTTCAAGGTAAGGATGCAC 59.481 41.667 0.00 0.00 0.00 4.57
2363 2387 4.724399 TCAAACTTCAAGGTAAGGATGCA 58.276 39.130 0.00 0.00 0.00 3.96
2364 2388 5.003804 TCTCAAACTTCAAGGTAAGGATGC 58.996 41.667 0.00 0.00 0.00 3.91
2365 2389 7.510549 TTTCTCAAACTTCAAGGTAAGGATG 57.489 36.000 0.00 0.00 0.00 3.51
2366 2390 8.712228 AATTTCTCAAACTTCAAGGTAAGGAT 57.288 30.769 0.00 0.00 0.00 3.24
2367 2391 8.413229 CAAATTTCTCAAACTTCAAGGTAAGGA 58.587 33.333 0.00 0.00 0.00 3.36
2368 2392 7.169813 GCAAATTTCTCAAACTTCAAGGTAAGG 59.830 37.037 0.00 0.00 0.00 2.69
2369 2393 7.706179 TGCAAATTTCTCAAACTTCAAGGTAAG 59.294 33.333 0.00 0.00 0.00 2.34
2370 2394 7.491048 GTGCAAATTTCTCAAACTTCAAGGTAA 59.509 33.333 0.00 0.00 0.00 2.85
2371 2395 6.978080 GTGCAAATTTCTCAAACTTCAAGGTA 59.022 34.615 0.00 0.00 0.00 3.08
2372 2396 5.812127 GTGCAAATTTCTCAAACTTCAAGGT 59.188 36.000 0.00 0.00 0.00 3.50
2373 2397 5.234972 GGTGCAAATTTCTCAAACTTCAAGG 59.765 40.000 0.00 0.00 0.00 3.61
2374 2398 6.019318 CAGGTGCAAATTTCTCAAACTTCAAG 60.019 38.462 0.00 0.00 0.00 3.02
2375 2399 5.811613 CAGGTGCAAATTTCTCAAACTTCAA 59.188 36.000 0.00 0.00 0.00 2.69
2376 2400 5.126869 TCAGGTGCAAATTTCTCAAACTTCA 59.873 36.000 0.00 0.00 0.00 3.02
2377 2401 5.591099 TCAGGTGCAAATTTCTCAAACTTC 58.409 37.500 0.00 0.00 0.00 3.01
2378 2402 5.596836 TCAGGTGCAAATTTCTCAAACTT 57.403 34.783 0.00 0.00 0.00 2.66
2379 2403 5.127682 AGTTCAGGTGCAAATTTCTCAAACT 59.872 36.000 0.00 0.00 0.00 2.66
2380 2404 5.232838 CAGTTCAGGTGCAAATTTCTCAAAC 59.767 40.000 0.00 0.00 0.00 2.93
2381 2405 5.350633 CAGTTCAGGTGCAAATTTCTCAAA 58.649 37.500 0.00 0.00 0.00 2.69
2382 2406 4.202141 CCAGTTCAGGTGCAAATTTCTCAA 60.202 41.667 0.00 0.00 0.00 3.02
2383 2407 3.318839 CCAGTTCAGGTGCAAATTTCTCA 59.681 43.478 0.00 0.00 0.00 3.27
2384 2408 3.569701 TCCAGTTCAGGTGCAAATTTCTC 59.430 43.478 0.00 0.00 0.00 2.87
2385 2409 3.319122 GTCCAGTTCAGGTGCAAATTTCT 59.681 43.478 0.00 0.00 0.00 2.52
2386 2410 3.319122 AGTCCAGTTCAGGTGCAAATTTC 59.681 43.478 0.00 0.00 0.00 2.17
2387 2411 3.299503 AGTCCAGTTCAGGTGCAAATTT 58.700 40.909 0.00 0.00 0.00 1.82
2388 2412 2.949447 AGTCCAGTTCAGGTGCAAATT 58.051 42.857 0.00 0.00 0.00 1.82
2389 2413 2.664402 AGTCCAGTTCAGGTGCAAAT 57.336 45.000 0.00 0.00 0.00 2.32
2390 2414 2.435372 AAGTCCAGTTCAGGTGCAAA 57.565 45.000 0.00 0.00 0.00 3.68
2391 2415 3.569194 TTAAGTCCAGTTCAGGTGCAA 57.431 42.857 0.00 0.00 0.00 4.08
2392 2416 3.118038 ACTTTAAGTCCAGTTCAGGTGCA 60.118 43.478 0.00 0.00 0.00 4.57
2393 2417 3.251004 CACTTTAAGTCCAGTTCAGGTGC 59.749 47.826 0.00 0.00 0.00 5.01
2394 2418 3.251004 GCACTTTAAGTCCAGTTCAGGTG 59.749 47.826 0.00 0.00 0.00 4.00
2395 2419 3.118038 TGCACTTTAAGTCCAGTTCAGGT 60.118 43.478 0.00 0.00 0.00 4.00
2396 2420 3.476552 TGCACTTTAAGTCCAGTTCAGG 58.523 45.455 0.00 0.00 0.00 3.86
2397 2421 3.058639 GCTGCACTTTAAGTCCAGTTCAG 60.059 47.826 16.28 8.19 36.40 3.02
2398 2422 2.878406 GCTGCACTTTAAGTCCAGTTCA 59.122 45.455 16.28 0.00 36.40 3.18
2399 2423 2.878406 TGCTGCACTTTAAGTCCAGTTC 59.122 45.455 16.28 2.88 36.40 3.01
2400 2424 2.930950 TGCTGCACTTTAAGTCCAGTT 58.069 42.857 16.28 0.00 36.40 3.16
2401 2425 2.638480 TGCTGCACTTTAAGTCCAGT 57.362 45.000 16.28 0.00 36.40 4.00
2402 2426 3.988379 TTTGCTGCACTTTAAGTCCAG 57.012 42.857 11.40 11.40 37.08 3.86
2403 2427 3.888323 TGATTTGCTGCACTTTAAGTCCA 59.112 39.130 0.00 0.00 0.00 4.02
2404 2428 4.503741 TGATTTGCTGCACTTTAAGTCC 57.496 40.909 0.00 0.00 0.00 3.85
2419 2443 3.689161 TGGTCTTTCTACGGCATGATTTG 59.311 43.478 0.00 0.00 0.00 2.32
2420 2444 3.950397 TGGTCTTTCTACGGCATGATTT 58.050 40.909 0.00 0.00 0.00 2.17
2421 2445 3.627395 TGGTCTTTCTACGGCATGATT 57.373 42.857 0.00 0.00 0.00 2.57
2422 2446 3.627395 TTGGTCTTTCTACGGCATGAT 57.373 42.857 0.00 0.00 0.00 2.45
2423 2447 3.071479 GTTTGGTCTTTCTACGGCATGA 58.929 45.455 0.00 0.00 0.00 3.07
2424 2448 2.811431 TGTTTGGTCTTTCTACGGCATG 59.189 45.455 0.00 0.00 0.00 4.06
2425 2449 3.134574 TGTTTGGTCTTTCTACGGCAT 57.865 42.857 0.00 0.00 0.00 4.40
2426 2450 2.623878 TGTTTGGTCTTTCTACGGCA 57.376 45.000 0.00 0.00 0.00 5.69
2427 2451 3.624900 GTTTGTTTGGTCTTTCTACGGC 58.375 45.455 0.00 0.00 0.00 5.68
2428 2452 3.847105 GCGTTTGTTTGGTCTTTCTACGG 60.847 47.826 0.00 0.00 0.00 4.02
2429 2453 3.285745 GCGTTTGTTTGGTCTTTCTACG 58.714 45.455 0.00 0.00 0.00 3.51
2430 2454 3.065648 TGGCGTTTGTTTGGTCTTTCTAC 59.934 43.478 0.00 0.00 0.00 2.59
2431 2455 3.280295 TGGCGTTTGTTTGGTCTTTCTA 58.720 40.909 0.00 0.00 0.00 2.10
2432 2456 2.096248 TGGCGTTTGTTTGGTCTTTCT 58.904 42.857 0.00 0.00 0.00 2.52
2433 2457 2.570442 TGGCGTTTGTTTGGTCTTTC 57.430 45.000 0.00 0.00 0.00 2.62
2434 2458 3.535280 ATTGGCGTTTGTTTGGTCTTT 57.465 38.095 0.00 0.00 0.00 2.52
2435 2459 4.657436 TTATTGGCGTTTGTTTGGTCTT 57.343 36.364 0.00 0.00 0.00 3.01
2436 2460 4.864704 ATTATTGGCGTTTGTTTGGTCT 57.135 36.364 0.00 0.00 0.00 3.85
2437 2461 5.694458 AGAAATTATTGGCGTTTGTTTGGTC 59.306 36.000 0.00 0.00 0.00 4.02
2438 2462 5.606505 AGAAATTATTGGCGTTTGTTTGGT 58.393 33.333 0.00 0.00 0.00 3.67
2439 2463 7.644986 TTAGAAATTATTGGCGTTTGTTTGG 57.355 32.000 0.00 0.00 0.00 3.28
2440 2464 8.760569 AGTTTAGAAATTATTGGCGTTTGTTTG 58.239 29.630 0.00 0.00 0.00 2.93
2441 2465 8.880878 AGTTTAGAAATTATTGGCGTTTGTTT 57.119 26.923 0.00 0.00 0.00 2.83
2442 2466 8.880878 AAGTTTAGAAATTATTGGCGTTTGTT 57.119 26.923 0.00 0.00 0.00 2.83
2467 2491 8.751242 GGCCCTAAGTAACCACATTTTAAAATA 58.249 33.333 12.98 0.00 0.00 1.40
2468 2492 7.456585 AGGCCCTAAGTAACCACATTTTAAAAT 59.543 33.333 7.64 7.64 0.00 1.82
2469 2493 6.783482 AGGCCCTAAGTAACCACATTTTAAAA 59.217 34.615 0.00 2.51 0.00 1.52
2470 2494 6.316513 AGGCCCTAAGTAACCACATTTTAAA 58.683 36.000 0.00 0.00 0.00 1.52
2471 2495 5.894653 AGGCCCTAAGTAACCACATTTTAA 58.105 37.500 0.00 0.00 0.00 1.52
2472 2496 5.523883 AGGCCCTAAGTAACCACATTTTA 57.476 39.130 0.00 0.00 0.00 1.52
2473 2497 4.397919 AGGCCCTAAGTAACCACATTTT 57.602 40.909 0.00 0.00 0.00 1.82
2474 2498 4.397919 AAGGCCCTAAGTAACCACATTT 57.602 40.909 0.00 0.00 0.00 2.32
2475 2499 5.727243 ATAAGGCCCTAAGTAACCACATT 57.273 39.130 0.00 0.00 0.00 2.71
2476 2500 5.727243 AATAAGGCCCTAAGTAACCACAT 57.273 39.130 0.00 0.00 0.00 3.21
2477 2501 5.523883 AAATAAGGCCCTAAGTAACCACA 57.476 39.130 0.00 0.00 0.00 4.17
2478 2502 9.631257 TTAATAAATAAGGCCCTAAGTAACCAC 57.369 33.333 0.00 0.00 0.00 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.