>input_sequence_77976
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-----------------------------------------------------------ATGATCCGCCCGACGATGGCG
TGGGAGAAGGCGGTGCAGAGATTCGCCAAGGGCGAGAAGGAATTCACCGAGGGGGCAGAGATCCTGCGGCAGTTCGCCGC
CGTCACGGAGGCGGACCTTGCGGCGGGGAAGCTGGTGCCCACGAGGGAATTCGCCGCCGCGACCGCGCTCGCCGAGGAGA
CCGCCCTCCGCCTGCTCCACAGGGCGGAGGAGGAGGTGGGGAACGCCGAGCACACGGCCGCGGCGTTCGTGGGTAGGCCG
GGGGCCGAGAAACTGGTGGAGCCGCTCCGCAGCCACGCCGCCTCCGTCGCCAGGCTGAGGACGCAGGCCGCGGAGTTCGC
CGCTTTCACGCGCCGGATGGCCTCGCTGCCGGTCGTGGAGGAGCCCGAGAGCTCCGAGTTGAGACCGCGTGGAGGCTTGA
CGGCGGGAGTCGAAGGATCCGGACGCAGGGAACAACGAACAAGGAGGCCCAACGCCAGATACTTCGGGCCCGAGTGGAGC
TCCTGA--------------------------------------------------------------------------
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>chr2A_1_TraesCS2A01G324400
GGGTGAGCCACCTGCCCCCGGAGATGCGGTTCCGGCGCGTCGTCGGCCACGGGCTCAACGCGCAGGAGCTGGCCAAGAAC
CCGCGCCTGGACTACTTCTTCGTCAGCGACCTCAACCGGGAGCAGCGGCTGGAGCTCGATAGCGCCTCCCTCGACGCCGT
TCTCTGCACCGTGAGCGTGCAGTACCTGCAGTCGCCAGAAAAAGTATGTGCCATCCACCACCGT-GTGTTCTTATCCTCT
TCTTCTCTCCACCACACAATTGATACATATTAACTGTTCGATCAGTTCATATGCTCACTGCATACTGATTTCCTTGTAAG
GTTTTCGCGGAGATCTACCGGGTGCTGAAGCCGGGCGGAGTGTGCATCATGAGCTTTAGCAACCGGATGTTCTACGAGAA
GGCCATCGGCGCGTGGCGGGAGGGGTCCGCCTACAGCCGCGTCCAGCTCGTGACGCAGTACTTCCAGTGCGTCGAAGGTT
TCACGCAGCCGGAGGTGGTCCGGAGGCTGCCGCCCTCCGACGCCGGCGGCAAGTCGGGCTCGTCGCCGCTGGAGGCCCTG
ATGAGGCTGTTCGGGCAGGCCAACTCTGACCCGTTTTACGCCGTCATCTCGTACAGAAACTTCAAGCCCATGTGAAATTC
TTCGATT--------------TACGTAGAAATGCCAAGAGCAGAAAACATGTCCGGATGTTGGAAATGCCAAGAGTAT--
AACATAGAGTATGTATATATACATACGAAATACGGAAGTTTCTGTACGAAACAGTACTGGCACGCTGCCTGTAACGTAGT
ATTTCAGACCCGCGTTCATCTGGAGATAGGAGTCCGAGACTGACTCGTACTAGTCGTACACGACGCGCCACGATCCCGCG
GGCAGTCGGAGTGGTCGGCCATATAAGCCAGCAGGGGGCGCGCGTCCAATAC--CCCAAGTTCACGCCGCTGCATTGCCG
CGTCCAGCCATCCAACACCGTAGCCCGTCGAACTTACGAGTTGATTAGGGCACGGCGCAATGATCCGCCCGACGATGGCG
TGGGAGAAGGCGGTGCAGAGATTCGCCAAGGGCGAGAAGGAATTCACCGAGGGGGCAGAGATCCTGCGGCAGTTCGCCGC
CGTCACGGAGGCGGACCTTGCGGCGGGGAAGCTGGTGCCCACGAGGGAATTCGCCGCCGCGACCGCGCTCGCCGAGGAGA
CCGCCCTCCGCCTGCTCCACAGGGCGGAGGAGGAGGTGGGGAACGCCGAGCACACGGCCGCGGCGTTCGTGGGTAGGCCG
GGGGCCGAGAAACTGGTGGAGCCGCTCCGCAGCCACGCCGCCTCCGTCGCCAGGCTGAGGACGCAGGCCGCGGAGTTCGC
CGCTTTCACGCGCCGGATGGCCTCGCTGCCGGTCGTGGAGGAGCCCGAGAGCTCCGAGTTGAGACCGCGTGGAGGCTTGA
CGGCGGGAGTCGAAGGATCCGGACGCAGGGAACAACGAACAAGGAGGCCCAACGCCAGATACTTCGGGCCCGAGTGGAGC
TCCTGAGCCCGCCGGCCGGCCATCGGACGCTCCAACACTGCTACTCCACAACTGATTTCATACGATCTACTCCTACCAGA
ATACGAGATCATGCCGTT-TGTTACCTTTGTCTTG--AAAGTTCAAACTAGATTATCGGTCGTTTGTTACTTTTCTGGTC
AAAGTTTAAACTAAGATTATCGGTCAGCTTCAGATGATGTATATACATATAGCTTGGGAACAGCGATACGTTTGTTGCAC
ATGTAAGACCTACCCA-CATGAGCAGTCAAATTCTAAGATCCTCTTTGATTCGTAGGATTTTCAAAACGTATGAATAAAA
AAACGTGAGATTAAAGTGGCATGTCATCTTAAATCCTAATGATTGTATAAATGTTTGATTGTGCATAAAAAAACGTAGGA
TTCTTTCAAAGAGGTTTGAGTGGAGTCTAGTGCAAATGAATCATATGAAAAAATTCATATGGTTTACAATACCACGAATC
AAACAACCTACATAGGAGAAATTCATAAGGAGTAGAATCCTCCAAGGCCTTCTTTGGTTTGGAGGAATTTTATAGAATAG
AATTCTTATAAGATTTTTTTTCTTTAGAGCCATTTGGTTCATAGAAACGGATTCCTATTCCTACACAGGATTAGTTCATA
TCCTCCACATTTCAAAGAAAATTAAACATGAGTCTAGACTCAATGAAAAAATTCGTATGATGCGAACAAATGACATTTTT
TTTCCTATTCTTACTCATAGGATTTAAGATGCATGTCATCTCATTTCCTATAAGTTTCTTATTCCTACGCACCGTCTGCA
AGCGTATGAACCAAAGAAGGCCCAAAATTCCTCTGAGAATCCTTTGAATCAAAGAAGCCCTAATGGTGCATCCTTACCTT
GAAGTTTGAGAAATTTGCACCTGAACTGGACTTAAAGTGCAGCAAATCATGCCGTAGAAAGACCAAACAAACGCCAATAA
TTTCTAAACTTATTTTAAAATGTGGTTACTTAGGGCCTTATTTATTAAAA
>chr2B_1
GGGTGAGCCACCTGCCCCCGGAGATGCTGTTCCGGCGGGTCGTCGGCCACGGGCTCAACGCGCAGGAGCTGGCCAAGAAC
CCGCGCCTGGACTACTTCTTCGTCAGCGACCTCAACCGGGAGCAGCGGCTGGAGCTCGAGAGCGCCTCCTTCGACGCCGT
GCTCTGCACCGTGAGCGTGCAGTACCTGCAATCGCCTGAAAAAGTATGTCCCATTCCCGTCCACCGTCTTCTTATCTTCT
CCTTCTCTCCACCACACAATTGATACAGTTT-------------GCTCATATGCTCGGTGCACACTGACTTCTTTGTAAG
GTTTTCGCGGAGATCCACCGGGTGCTGAAGCCGGGAGGGGTGTGCATCGTGAGCTTCAGCAACCGGATGTTCTACGAGAA
GGCGATCGGCGCGTGGCGGGAGGGGTCCGCCTACAGCCGCGTCCAGCTCGTGACGCAGTACTTCCAGTGCGTCGAAGGGT
TCACGCAGCCGGAGGTGGTCCGGAGGCTGCCCCCCTCGGACGCCGGCGGAAAGTCGGGCTCGTCGCCGCTGGAGGCCCTG
ATGCGACTGTTCGGGCAGGCGAACTCTGACCCGTTCTACGCGCTCATCTCGTACAGAAACTTCAAGCCCATGTGAAATCC
TTCGATTCGCCCTTCCCAGCGTACGTAGAAATGCCAAGAGCAGAAAACATGTCCCGATGTTGGTTATGCAAATACAGTAC
AACATGGAGTATGTATATATACATACGGAATACGGAAGTTTCTGTACGAAACAGTACTGTCACGCTGCCTGTAACGTA-T
ATTTCAGACCCGCGTTCATCTGGAGATGGGAATCCGAGTCTGACTCGTATACGACACACGT-ACGCGCCACGATCCCGCG
GACAGTCGGAGTGGTCGGCCATATAAGCCAGCAGGGGGCGCGCGTCCAATAC--CCCAAGTTCACGCCGCTGCATTGCCG
CGTCCTGCCATCCAACACCGTAGTCCGTCGAACCCACGAGCTGATTAGGGCGCGGCGCAATGATCCGTCCGACGATGGCG
TGGGAGAAGGCGGTGCGGAGATTCGACAAGGGCGAGAAGGCATTCACCGAGGGGGCAGAGATCCTGCGGCTGGCCGCTGC
CGTCACGGAGGCGGACCTTGCGGCTGGGAAGCTGGTGCCCACGAGGGAATTCGTCGCCGCGACCGCGCTCGCGGAGGAGA
CCGCCCTCCGGCTGCTCCACAGGGCGGAGGAGGAAGTGGAGGACGCCGAGCACACGGCCGCGGCGTTCGTGGGTAGGCCG
GGGGCCGAGAAACTGGTGGAGCCGCTCCAAAGGCACGCCGCGTCTGTCGCCAGGCTGAGGACGCAGGCCGCGGAGTTCGC
CGCTTTCACGCGCCGGATGGCCTCGCTGCCGGTCATGGAGGAGCTCGATAGCTCCGAGTTTAGACCGCGTGGAGGCTTGA
CGGCGGGAGTGGAAGGATCCGGACGCAGGGAACCAAGAACAAGGAGGCCCAACGCCAGATACTTCGGGCCCGACTGGAGC
TCCTGAGCCGGCCGGCCGGCCATCCGATGCTCCAACACTGCTACTCCACAACTGATTTCATCCGATGTA---CTACCAGA
ATACGAGATCATGCAGTT-TGTTACTTTTGTGTAAAAAAAGTTCAGACTAGATTATCGGTCGTTTGTTACTTTTGTGTTC
AAAGTTTAAACT-AGATTATCGATCAGCTTCAGATGATTTATACACATACAGCTTGGGAACAGCGATACGCTTGTTGCAC
GTGTAAGACCTACCCA-CACGGGCAGTCAAATTCTAA-------------------------------------------
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>chr2D_1
GGGTGAGCCACCTGCCTCCGGAGATGCGGTTCCGGCGGGTCGTCGGCCACGGGCTCAACGCGCAGGAGCTGGCCAAGAAC
CCGCGCCTGGACTACTTCTTCGTCAGTGACCTCAACCGGGAGCAGCGGCTGGAGCTCGAGAGCGCCTCCTTCGACGCCGT
GCTCTGCACCGTGAGCGTGCAGTACCTGCAGTCGCCTGAAAAAGTATTTCCCATTCCCATCCACCGTGTTCTTATCCTCT
CCTTCTCTCCACCACACAATTGATACATTTT-------------GTTCACATGCTCGGTTCACACTAACTTCTTTGTAAG
GTTTTCGCGGAGATCTACCGGGTGCTGAAGCCGGGCGGGGTGTGCATCGTGAGCTTCAGCAACCGGATGTTCTACGAGAA
GGCGATCGGCGCGTGGCGGGAGGGGTCCGCCTACAGCCGCGTCCAGCTCGTGACGCAGTACTTCCAGTGCGTCGAAGGGT
TCACGCAGCCGGAGGTGGTCCGAAGGCTGCCCCCCTCGGACGCCGGCGGCAAGTCGGGCTCGTCGCCGCTGGAGGCCCTG
ATGCGGCTGTTCGGGCAGGCGAACTCTGACCCGTTTTACGCGCTCATCTCGTACAGAAACTTCAAGCCCATGTGAAATTC
TTCGATTCGCCCTTCGCAGCGTACGTAGAAATGCCAAGAGCAGAAAACATGTCCCGATGTTGGTTATGCAA------TAC
AACATAGAGTATGTATATATACATACGAAATAAGAAAGTTTCTCTACGAAACAGT-------------------------
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>chr2D_752
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------------------------------------------------AAACAGTACTGTCACGCTGCCCGTAACG---T
ATTTCAGACCCGCGTTCATCTGGAGATGGTAATCCGAGACTAACTCGTACACGACACACGT-ACGCGCCACGATCCCGCT
GACAGTCGGAGTGGTCGGCCATATAAGCCAGCAGGGA-CGCGCGTCCAATGTAACCCAAGTTCACGCCGCTGCATTTCCG
CGTCCTGCCATCCAACACCGTAGTCCGTCGAACTTACGAGTTGATTAGGGCGCGGCGCAATGATCCGTCCGACGATGGCG
TGGGAGAAGGCGGTGCAGAGATTCGCCAAGGGCGAGAAGGAATTCACCGAGGGGGCAGAGATCCTGCGGCAGTTCGCCGC
CGTCACGGAGGCGGACCTTGCGGTGGGGAAGCTGGTGCCCACGAGGGAATTCGCCGCCGCGACCGCGCTCGCCGAGGAGA
CCGCCCTCCGCCTGCTCGACAGAGCGGAGGAGGAGGCGAAGAACGCCGAGCACACGGCCGCGGCGTTCGTGGGTAGGCCG
GGGGCCGAGAAACTGGTGGAGCCGCTCCAAAGGCACGCCGCGTCCGTCGCCAGGCTGAGGACGCAGGCCGCGGAATTCGC
CGCTTTCACGTGCCGGGTAGCCTCGCTGCCGGTCGTGGAGGAGCCCGAGAGCTCCGAGTTGAGACCGCGTGGAGGCTTGA
CGGCGGGAGTGGAAGGATCCGGACGCAGGGAAGCAAGAACAAGGAGGCCCAACGCCAGATACTTCGGGCCCGAGTGGAGC
TCCTGAGCCCGCCGGCCGGCCATCGAACGCTCCAACACTGCCACTCCACAACTGATTTCATCCGAT------CTACCAGA
ATACGAGATCATGCCGTT-TGTTACTTTTGTGTTC--AAAGTTCAAACTAGATTATCGGTCGTTTGTTAGTTTTGTGTTC
AAAGTTTAAACT-AGATTATTGGTCAGCTTCAGATGATGTATACACATATAGCTTGGGAACAGCGATACGCTTGTTGAAC
ATATAAGACCTACCCACCACGGGCAGTCAAATTCTAA-------------------------------------------
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>chr2A_975
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---------------------------------TTACGAGTTGATCAGGACGCGCCGC-ATGGTCCGTCCGACGATGGCG
TGGGAGAGCGCGGTGCAGACACTCGACGAAGGCGGCAAGGCGTTCACCAAGGGGGCAGAGATTCTACGGCAGTTCGCCTC
CGTCACGGAGGCGGAAGTTGCGGCGGGGAAGCCGGTGCCCGCGAGGGAGTTCGACGCCGTGGCCGCGCTCGCCGAGGAGA
CCGCCCTCCGGCTGCTCGACAGGGCGGCCAAGGAGGCGGAGGCCGGCGAGCAGACCGCCGCGGCGTTCGTGCGTAGGCCG
GGGGCCAAGAAACTGGCGGAGGCGCGCCGCAGGCACGCCGCGTCCGCCGCCGGGCTGAGGACGCAGGCCGCGGAGTTCGC
CGCTTTCAGGCGCCGGATGGCCTCGCTGCCGGTCGTGGAGGAGCTGGAGAGCTCGGAGTTGGGGCCGCGTGGAGGCTCGA
CGGCGGGAGTAGAAGGAACCGAACGCAAGGAAGCAAGAACAAGGAAGCCCAACGCCAGATACCTCGAGGACGAGTGGAGC
TCCTGAGCCCGCCGGCCGGCCACGT------------------------AACAGATTTTATCGGAT------CTACCGGA
ATAAGAGATCATGCCGTTCTGTTAGTTTTCTGTTC--AAAGCTCAAACTAGATTATCGGTCGTTTGTTACTTTTGTGTTC
AAAGTTCAAACT-AGATTATCGGTCGGCTTCAGATGATGTAT--------------------------------------
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>chr2B_975
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---------------------------------TTACGAGTTCATCAGGACGCGGCGC-ATGATCCGTCCGACGATGGCG
TGGAAGAGCGCTGTGCAGACACTCGACGAAGGCGGCAAGGCATTCACCAAAGGGGCAGAGATTCTGCGGCAGTTCGCCTC
CGTCACGGAGGCGGAACTTGCCGCGGGGAAGCCGGTGCCCACGAGGGAATTCGACTCCGTGGCCGCGCTCGCCGAGGAGA
CCGCCCTCCGGCTGCTCGACAGGGCGGCCAAGGAGGCGGAGGCCGGCGAGCAGACCGCCGCGGCGTTCGTGGGTAGACCG
GGGGCCAAGAAACTGGCGGAGGCGCGCCGCAGGCACGCCGCGTCCGTCGCCGGGCTGAGGACGCAGGCCGCAGAGTTCGC
CGCTTTCAGGCGCCGGATGGCCTCGCTGCCGGCCGTGGAGGAGCTCGACAGCTCGGAGTTAAGACCGCGTGGAGGCTCGA
CGGCGGGAGTAGAAGGAACCGAACGCAGGGAAGCAAGAACAAGGAAGCCCAACGCTAGATACCTTGGGGACGAGTGGAGC
TCCTGAGCCGGCCGGCCGGCCACG------------------------CAACTGATTTCATCCGAT------CTACCGTA
ATAAGAGATCGTGCCGTTCTGTTAGTTTTCAGTTC--AAAGTTCAAACTAGATTATCGGTTGTTTGTTACTTTTATGTTC
AAAGTTCAAACT-AGATTATCGGTCGGCTTTAGATGGTGCATCT--ATATTGCTTGGGTACAGCGATAAGTTTGTTGCAC
ATGTATGATGTATCCA-CATGAGCCGTCAAATTCTAA-------------------------------------------
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>chr2D_975
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---------------------------------TTACGAGTTCATCAGGACGCGGCGC-ATCATCCGTCCGACGATGGCG
TGGGAGAGCGCGGTGCAGACACTCGACGAAGGCGGCAAGGCGTTCACGAAGGGGGCAGAGATTCTGCGGCAGTTCGCCTC
CGTCACGGAGGCGGAAGTTGCGGCGGGGAAGCCGGTGCCCATGACGGAATTCGACTCCGTGGCCGCGCTCGCCGAGGAGA
CCGCCCTCCGGCTGCTCGATAGGGCAGCCAAGGAGGCGGAGGCCGGCGAGCAGACCGCCGCGGCGTTCGCGCGTAGGCCG
GGGGCCAAGAAACTGGCGGAAGCGCGCCGCAGGCACGCCGCGTCCGTCGCCGGGCTGAGGACGCAGGCCGCGGAGTTCGC
CGCTTTCAGGCGCCGGATGGCCTCGCTGCCGGTGGTGGAGGAGCTCGATAGCTCGGAGTTGGGGCCGCGTGGAGGCTCGA
CGGCGGGAGTCGAAGGAACCGGTCGCGGGGAAGCCAGAACAAGGAAGCCCAACGCAAGATACCTTGGGGACGAGTGGAGC
TCCTGAGCCCGCCGGCCGGCCACC------------------------CAACTGATTTCATCCGAT------CTACCGGA
ATAAGAGATCATGCCGTTTTGTTAGTTTTCTGTTC--AAAGTTCAAACTAGATTATCGGTCGTTTGTTACTTCTGTGTTC
AAAGTTCAAACT-AGATCTTCGGTCGGTTTCAGATGATGCATTT--ATATAGCTTGGGAACAGCGATAAGTTTGTTGCAC
GTGTA---------------------------------------------------------------------------
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>SNPs
-------------------------------------S------------------------------------------
-----------------------------------------------------------S---------S----------
S-----------------------------------S------------S----S-S-SS--SS----------------
S---------------------------S--SSSSSSSSSSSSS------------SS----S-----S---S-------
--------------------------------------S---------S-------S-----------------------
---S--------------------------------------------------------------------------S-
-------------------------------S-----S------------------------------------------
---S----------------S--------------------SS-------------------------------------
------------------------------------------------------S--------SS----S--S-SSS---
-----------------------------------------------------------S------------------S-
---------------------------S---S------------------SS-S-SS--SSS------------------
-S------------------------------------------------------------------------------
-----S-----------------S---------------------------S---------------S------------
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---------------------------------------S----------------------------------------
--------------------------------S--------S--------------------------------------
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---------------------------------S-S--------------------------------------------
-------------------------------------------------------------S----S--SSS--------
-------------------------S-----S--S---------------------------------------S--S--
------------S-------------------------------------------------------------------
-------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_602
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----------------------ACTCTGACCCGTTTTACGCC--------------------------------------
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>reverse_2311
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----------------------------------------------------------------------ACCGTCTGCA
AGCGTATGAA----------------------------------------------------------------------
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--------------------------------------------------
