Multiple sequence alignment - TraesCS2A01G318800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G318800 chr2A 100.000 3636 0 0 1 3636 543761049 543764684 0.000000e+00 6715.0
1 TraesCS2A01G318800 chr2A 87.762 621 69 4 3020 3634 535150139 535149520 0.000000e+00 719.0
2 TraesCS2A01G318800 chr2A 89.130 92 8 2 2864 2953 752457311 752457220 2.970000e-21 113.0
3 TraesCS2A01G318800 chr2A 86.905 84 9 2 2874 2955 550693706 550693623 3.870000e-15 93.5
4 TraesCS2A01G318800 chr2D 91.161 1765 100 29 252 1981 405631523 405633266 0.000000e+00 2344.0
5 TraesCS2A01G318800 chr2D 89.365 677 64 5 2960 3635 640637768 640638437 0.000000e+00 845.0
6 TraesCS2A01G318800 chr2D 93.086 405 21 4 2442 2842 405633714 405634115 1.450000e-163 586.0
7 TraesCS2A01G318800 chr2D 87.751 449 26 8 1992 2440 405633247 405633666 7.010000e-137 497.0
8 TraesCS2A01G318800 chr2D 78.005 391 52 21 251 612 577349369 577348984 7.910000e-52 215.0
9 TraesCS2A01G318800 chr2D 92.473 93 6 1 2866 2957 396266387 396266295 8.190000e-27 132.0
10 TraesCS2A01G318800 chr2D 93.827 81 4 1 2874 2953 542198816 542198896 1.770000e-23 121.0
11 TraesCS2A01G318800 chr2B 93.432 1492 88 8 494 1981 481162427 481163912 0.000000e+00 2204.0
12 TraesCS2A01G318800 chr2B 92.099 405 26 4 2442 2842 481164449 481164851 1.900000e-157 566.0
13 TraesCS2A01G318800 chr2B 82.550 447 60 8 1992 2437 481163893 481164322 9.530000e-101 377.0
14 TraesCS2A01G318800 chr2B 76.720 189 38 6 251 434 470571891 470571704 2.310000e-17 100.0
15 TraesCS2A01G318800 chr3A 90.855 678 54 4 2959 3635 492325939 492326609 0.000000e+00 902.0
16 TraesCS2A01G318800 chr4D 90.680 676 54 5 2962 3635 139307519 139308187 0.000000e+00 891.0
17 TraesCS2A01G318800 chr4D 91.135 643 52 5 2995 3635 470857487 470858126 0.000000e+00 867.0
18 TraesCS2A01G318800 chr1D 91.331 646 56 0 2990 3635 5529898 5530543 0.000000e+00 883.0
19 TraesCS2A01G318800 chr1D 90.530 623 44 9 3026 3635 332396277 332396897 0.000000e+00 809.0
20 TraesCS2A01G318800 chr1D 78.431 153 22 8 251 398 12281300 12281154 5.000000e-14 89.8
21 TraesCS2A01G318800 chr7D 90.308 650 55 8 2990 3635 6578376 6577731 0.000000e+00 845.0
22 TraesCS2A01G318800 chr7D 78.431 153 20 9 251 398 528074462 528074606 1.800000e-13 87.9
23 TraesCS2A01G318800 chr5D 88.679 689 60 6 2959 3635 287115409 287114727 0.000000e+00 824.0
24 TraesCS2A01G318800 chr5D 77.778 369 56 12 248 591 170235853 170235486 1.710000e-48 204.0
25 TraesCS2A01G318800 chr5D 77.778 369 48 19 277 615 254574041 254574405 2.860000e-46 196.0
26 TraesCS2A01G318800 chr5D 75.462 379 57 19 251 603 529771492 529771124 6.290000e-33 152.0
27 TraesCS2A01G318800 chr3D 85.714 231 33 0 3 233 423008940 423009170 1.010000e-60 244.0
28 TraesCS2A01G318800 chr3D 94.565 92 3 2 2864 2953 33158833 33158924 1.360000e-29 141.0
29 TraesCS2A01G318800 chr5B 77.546 383 53 17 247 599 162103652 162103273 2.210000e-47 200.0
30 TraesCS2A01G318800 chr5B 90.588 85 8 0 2874 2958 357915252 357915168 2.970000e-21 113.0
31 TraesCS2A01G318800 chr5B 85.333 75 9 2 2867 2939 632125094 632125168 3.890000e-10 76.8
32 TraesCS2A01G318800 chr5A 76.943 386 56 16 251 606 177059903 177060285 4.790000e-44 189.0
33 TraesCS2A01G318800 chr3B 88.542 96 11 0 2867 2962 764802759 764802664 2.290000e-22 117.0
34 TraesCS2A01G318800 chr4A 85.393 89 12 1 2864 2951 662590551 662590639 1.390000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G318800 chr2A 543761049 543764684 3635 False 6715.000000 6715 100.000000 1 3636 1 chr2A.!!$F1 3635
1 TraesCS2A01G318800 chr2A 535149520 535150139 619 True 719.000000 719 87.762000 3020 3634 1 chr2A.!!$R1 614
2 TraesCS2A01G318800 chr2D 405631523 405634115 2592 False 1142.333333 2344 90.666000 252 2842 3 chr2D.!!$F3 2590
3 TraesCS2A01G318800 chr2D 640637768 640638437 669 False 845.000000 845 89.365000 2960 3635 1 chr2D.!!$F2 675
4 TraesCS2A01G318800 chr2B 481162427 481164851 2424 False 1049.000000 2204 89.360333 494 2842 3 chr2B.!!$F1 2348
5 TraesCS2A01G318800 chr3A 492325939 492326609 670 False 902.000000 902 90.855000 2959 3635 1 chr3A.!!$F1 676
6 TraesCS2A01G318800 chr4D 139307519 139308187 668 False 891.000000 891 90.680000 2962 3635 1 chr4D.!!$F1 673
7 TraesCS2A01G318800 chr4D 470857487 470858126 639 False 867.000000 867 91.135000 2995 3635 1 chr4D.!!$F2 640
8 TraesCS2A01G318800 chr1D 5529898 5530543 645 False 883.000000 883 91.331000 2990 3635 1 chr1D.!!$F1 645
9 TraesCS2A01G318800 chr1D 332396277 332396897 620 False 809.000000 809 90.530000 3026 3635 1 chr1D.!!$F2 609
10 TraesCS2A01G318800 chr7D 6577731 6578376 645 True 845.000000 845 90.308000 2990 3635 1 chr7D.!!$R1 645
11 TraesCS2A01G318800 chr5D 287114727 287115409 682 True 824.000000 824 88.679000 2959 3635 1 chr5D.!!$R2 676

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
26 27 0.042581 TCTGTCCCACATAGAGGGCA 59.957 55.0 0.0 0.0 46.36 5.36 F
1017 1047 0.036010 CCATGGCGGTCCTCATATCC 60.036 60.0 0.0 0.0 0.00 2.59 F
2005 2041 0.179468 TGCGGGTAATAGGGACAAGC 59.821 55.0 0.0 0.0 0.00 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2003 2039 0.109597 GCAACGCTGCTTAACATGCT 60.110 50.0 2.93 0.0 45.74 3.79 R
2297 2334 0.523072 GTCCAATGCGTGCTTGACAT 59.477 50.0 0.00 0.0 0.00 3.06 R
3486 3681 1.166531 AAGAGCCAGCGTTTGACACC 61.167 55.0 0.00 0.0 0.00 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.541213 GTCCTCCTCTGTCCCACA 57.459 61.111 0.00 0.00 0.00 4.17
18 19 2.998493 GTCCTCCTCTGTCCCACAT 58.002 57.895 0.00 0.00 0.00 3.21
19 20 2.160721 GTCCTCCTCTGTCCCACATA 57.839 55.000 0.00 0.00 0.00 2.29
20 21 2.035632 GTCCTCCTCTGTCCCACATAG 58.964 57.143 0.00 0.00 0.00 2.23
21 22 1.930204 TCCTCCTCTGTCCCACATAGA 59.070 52.381 0.00 0.00 0.00 1.98
22 23 2.091610 TCCTCCTCTGTCCCACATAGAG 60.092 54.545 0.00 0.00 39.55 2.43
25 26 0.755686 CTCTGTCCCACATAGAGGGC 59.244 60.000 0.00 0.00 46.36 5.19
26 27 0.042581 TCTGTCCCACATAGAGGGCA 59.957 55.000 0.00 0.00 46.36 5.36
27 28 1.135094 CTGTCCCACATAGAGGGCAT 58.865 55.000 0.00 0.00 46.36 4.40
28 29 2.090775 TCTGTCCCACATAGAGGGCATA 60.091 50.000 0.00 0.00 46.36 3.14
29 30 2.301296 CTGTCCCACATAGAGGGCATAG 59.699 54.545 0.00 0.00 46.36 2.23
30 31 1.625818 GTCCCACATAGAGGGCATAGG 59.374 57.143 0.00 0.00 46.36 2.57
31 32 0.326264 CCCACATAGAGGGCATAGGC 59.674 60.000 0.00 0.00 39.96 3.93
41 42 2.423446 GCATAGGCCGTCTCCAGG 59.577 66.667 0.00 0.00 0.00 4.45
42 43 3.142393 CATAGGCCGTCTCCAGGG 58.858 66.667 0.00 0.00 0.00 4.45
47 48 4.115199 GCCGTCTCCAGGGCCATT 62.115 66.667 6.18 0.00 46.36 3.16
48 49 2.677228 CCGTCTCCAGGGCCATTT 59.323 61.111 6.18 0.00 0.00 2.32
49 50 1.452108 CCGTCTCCAGGGCCATTTC 60.452 63.158 6.18 0.00 0.00 2.17
50 51 1.815421 CGTCTCCAGGGCCATTTCG 60.815 63.158 6.18 0.00 0.00 3.46
51 52 2.115291 GTCTCCAGGGCCATTTCGC 61.115 63.158 6.18 0.00 0.00 4.70
52 53 2.273449 CTCCAGGGCCATTTCGCT 59.727 61.111 6.18 0.00 0.00 4.93
53 54 1.379044 CTCCAGGGCCATTTCGCTT 60.379 57.895 6.18 0.00 0.00 4.68
54 55 1.660560 CTCCAGGGCCATTTCGCTTG 61.661 60.000 6.18 0.00 0.00 4.01
55 56 1.678635 CCAGGGCCATTTCGCTTGA 60.679 57.895 6.18 0.00 0.00 3.02
56 57 1.660560 CCAGGGCCATTTCGCTTGAG 61.661 60.000 6.18 0.00 0.00 3.02
57 58 2.048603 AGGGCCATTTCGCTTGAGC 61.049 57.895 6.18 0.00 37.78 4.26
58 59 2.342650 GGGCCATTTCGCTTGAGCA 61.343 57.895 4.39 0.00 42.21 4.26
59 60 1.153958 GGCCATTTCGCTTGAGCAC 60.154 57.895 0.00 0.00 42.21 4.40
60 61 1.153958 GCCATTTCGCTTGAGCACC 60.154 57.895 3.65 0.00 42.21 5.01
61 62 1.589716 GCCATTTCGCTTGAGCACCT 61.590 55.000 3.65 0.00 42.21 4.00
62 63 0.883833 CCATTTCGCTTGAGCACCTT 59.116 50.000 3.65 0.00 42.21 3.50
63 64 1.135575 CCATTTCGCTTGAGCACCTTC 60.136 52.381 3.65 0.00 42.21 3.46
64 65 1.536766 CATTTCGCTTGAGCACCTTCA 59.463 47.619 3.65 0.00 42.21 3.02
65 66 0.944386 TTTCGCTTGAGCACCTTCAC 59.056 50.000 3.65 0.00 42.21 3.18
66 67 1.221466 TTCGCTTGAGCACCTTCACG 61.221 55.000 3.65 0.00 42.21 4.35
67 68 2.558313 GCTTGAGCACCTTCACGC 59.442 61.111 0.00 0.00 41.59 5.34
68 69 2.970974 GCTTGAGCACCTTCACGCC 61.971 63.158 0.00 0.00 41.59 5.68
69 70 1.597854 CTTGAGCACCTTCACGCCA 60.598 57.895 0.00 0.00 0.00 5.69
70 71 1.572085 CTTGAGCACCTTCACGCCAG 61.572 60.000 0.00 0.00 0.00 4.85
71 72 2.038814 TTGAGCACCTTCACGCCAGA 62.039 55.000 0.00 0.00 0.00 3.86
72 73 1.739562 GAGCACCTTCACGCCAGAG 60.740 63.158 0.00 0.00 0.00 3.35
73 74 2.743928 GCACCTTCACGCCAGAGG 60.744 66.667 0.00 0.00 0.00 3.69
74 75 2.046892 CACCTTCACGCCAGAGGG 60.047 66.667 0.29 0.29 40.37 4.30
75 76 2.203788 ACCTTCACGCCAGAGGGA 60.204 61.111 8.02 0.00 38.10 4.20
76 77 2.286523 ACCTTCACGCCAGAGGGAG 61.287 63.158 8.02 0.00 38.10 4.30
78 79 0.970937 CCTTCACGCCAGAGGGAGTA 60.971 60.000 0.00 0.00 46.32 2.59
79 80 0.173708 CTTCACGCCAGAGGGAGTAC 59.826 60.000 0.00 0.00 46.32 2.73
80 81 1.592400 TTCACGCCAGAGGGAGTACG 61.592 60.000 0.00 0.00 46.32 3.67
81 82 2.754658 ACGCCAGAGGGAGTACGG 60.755 66.667 0.00 0.00 46.19 4.02
82 83 4.208686 CGCCAGAGGGAGTACGGC 62.209 72.222 0.00 0.00 39.45 5.68
83 84 3.851128 GCCAGAGGGAGTACGGCC 61.851 72.222 0.00 0.00 36.73 6.13
84 85 2.042843 CCAGAGGGAGTACGGCCT 60.043 66.667 0.00 0.00 35.59 5.19
85 86 2.128507 CCAGAGGGAGTACGGCCTC 61.129 68.421 0.00 0.00 35.59 4.70
86 87 2.124236 AGAGGGAGTACGGCCTCG 60.124 66.667 0.00 0.00 43.02 4.63
87 88 3.217743 GAGGGAGTACGGCCTCGG 61.218 72.222 0.00 0.00 41.39 4.63
88 89 3.711059 GAGGGAGTACGGCCTCGGA 62.711 68.421 0.00 0.00 41.39 4.55
89 90 2.521224 GGGAGTACGGCCTCGGAT 60.521 66.667 0.00 0.00 41.39 4.18
90 91 2.562876 GGGAGTACGGCCTCGGATC 61.563 68.421 0.00 0.00 41.39 3.36
91 92 2.562876 GGAGTACGGCCTCGGATCC 61.563 68.421 0.00 0.00 41.39 3.36
92 93 1.826921 GAGTACGGCCTCGGATCCA 60.827 63.158 13.41 0.00 41.39 3.41
93 94 1.152525 AGTACGGCCTCGGATCCAT 60.153 57.895 13.41 0.00 41.39 3.41
94 95 0.759436 AGTACGGCCTCGGATCCATT 60.759 55.000 13.41 0.00 41.39 3.16
95 96 0.600255 GTACGGCCTCGGATCCATTG 60.600 60.000 13.41 0.00 41.39 2.82
96 97 2.377628 TACGGCCTCGGATCCATTGC 62.378 60.000 13.41 10.09 41.39 3.56
97 98 2.595754 GGCCTCGGATCCATTGCC 60.596 66.667 16.92 16.92 0.00 4.52
98 99 2.192979 GCCTCGGATCCATTGCCA 59.807 61.111 13.41 0.00 0.00 4.92
99 100 2.189499 GCCTCGGATCCATTGCCAC 61.189 63.158 13.41 0.00 0.00 5.01
100 101 1.224315 CCTCGGATCCATTGCCACA 59.776 57.895 13.41 0.00 0.00 4.17
101 102 0.816825 CCTCGGATCCATTGCCACAG 60.817 60.000 13.41 0.00 0.00 3.66
102 103 0.816825 CTCGGATCCATTGCCACAGG 60.817 60.000 13.41 0.00 0.00 4.00
103 104 1.224315 CGGATCCATTGCCACAGGA 59.776 57.895 13.41 0.00 35.59 3.86
104 105 0.394216 CGGATCCATTGCCACAGGAA 60.394 55.000 13.41 0.00 34.62 3.36
105 106 1.751733 CGGATCCATTGCCACAGGAAT 60.752 52.381 13.41 0.00 34.62 3.01
106 107 2.487086 CGGATCCATTGCCACAGGAATA 60.487 50.000 13.41 0.00 34.62 1.75
107 108 3.771216 GGATCCATTGCCACAGGAATAT 58.229 45.455 6.95 0.00 34.62 1.28
108 109 3.760684 GGATCCATTGCCACAGGAATATC 59.239 47.826 6.95 0.00 34.62 1.63
109 110 4.508047 GGATCCATTGCCACAGGAATATCT 60.508 45.833 6.95 0.00 34.62 1.98
110 111 3.824133 TCCATTGCCACAGGAATATCTG 58.176 45.455 0.00 0.00 40.40 2.90
111 112 3.459227 TCCATTGCCACAGGAATATCTGA 59.541 43.478 0.00 0.00 38.11 3.27
112 113 4.079844 TCCATTGCCACAGGAATATCTGAA 60.080 41.667 0.00 0.00 38.11 3.02
113 114 4.831155 CCATTGCCACAGGAATATCTGAAT 59.169 41.667 0.00 0.00 38.11 2.57
114 115 5.048224 CCATTGCCACAGGAATATCTGAATC 60.048 44.000 0.00 0.00 38.11 2.52
115 116 5.378230 TTGCCACAGGAATATCTGAATCT 57.622 39.130 0.00 0.00 38.11 2.40
116 117 5.378230 TGCCACAGGAATATCTGAATCTT 57.622 39.130 0.00 0.00 38.11 2.40
117 118 5.371526 TGCCACAGGAATATCTGAATCTTC 58.628 41.667 0.00 0.00 38.11 2.87
118 119 5.104402 TGCCACAGGAATATCTGAATCTTCA 60.104 40.000 0.00 0.00 38.11 3.02
128 129 2.649742 TGAATCTTCAGGGGGAGTCT 57.350 50.000 0.00 0.00 32.50 3.24
129 130 3.776731 TGAATCTTCAGGGGGAGTCTA 57.223 47.619 0.00 0.00 32.50 2.59
130 131 4.074799 TGAATCTTCAGGGGGAGTCTAA 57.925 45.455 0.00 0.00 32.50 2.10
131 132 4.635473 TGAATCTTCAGGGGGAGTCTAAT 58.365 43.478 0.00 0.00 32.50 1.73
132 133 4.656112 TGAATCTTCAGGGGGAGTCTAATC 59.344 45.833 0.00 0.00 32.50 1.75
133 134 4.567987 ATCTTCAGGGGGAGTCTAATCT 57.432 45.455 0.00 0.00 0.00 2.40
134 135 3.917300 TCTTCAGGGGGAGTCTAATCTC 58.083 50.000 0.00 0.00 0.00 2.75
143 144 4.143986 GGAGTCTAATCTCCCAAACCTG 57.856 50.000 1.70 0.00 45.84 4.00
144 145 3.536570 GAGTCTAATCTCCCAAACCTGC 58.463 50.000 0.00 0.00 0.00 4.85
145 146 2.093447 AGTCTAATCTCCCAAACCTGCG 60.093 50.000 0.00 0.00 0.00 5.18
146 147 1.017387 CTAATCTCCCAAACCTGCGC 58.983 55.000 0.00 0.00 0.00 6.09
147 148 0.326595 TAATCTCCCAAACCTGCGCA 59.673 50.000 10.98 10.98 0.00 6.09
148 149 0.539438 AATCTCCCAAACCTGCGCAA 60.539 50.000 13.05 0.00 0.00 4.85
149 150 0.539438 ATCTCCCAAACCTGCGCAAA 60.539 50.000 13.05 0.00 0.00 3.68
150 151 1.172180 TCTCCCAAACCTGCGCAAAG 61.172 55.000 13.05 8.76 0.00 2.77
151 152 2.146073 CTCCCAAACCTGCGCAAAGG 62.146 60.000 13.05 13.47 43.57 3.11
152 153 2.339712 CCAAACCTGCGCAAAGGG 59.660 61.111 18.84 15.70 42.11 3.95
153 154 2.356194 CAAACCTGCGCAAAGGGC 60.356 61.111 18.84 0.00 42.11 5.19
187 188 4.849310 GCGCAATGGCCGGGTAGA 62.849 66.667 0.30 0.00 36.38 2.59
188 189 2.588877 CGCAATGGCCGGGTAGAG 60.589 66.667 2.18 0.00 36.38 2.43
189 190 2.902343 GCAATGGCCGGGTAGAGC 60.902 66.667 2.18 0.00 0.00 4.09
190 191 2.588877 CAATGGCCGGGTAGAGCG 60.589 66.667 2.18 0.00 0.00 5.03
191 192 2.762459 AATGGCCGGGTAGAGCGA 60.762 61.111 2.18 0.00 0.00 4.93
192 193 3.090219 AATGGCCGGGTAGAGCGAC 62.090 63.158 2.18 0.00 0.00 5.19
193 194 4.753662 TGGCCGGGTAGAGCGACT 62.754 66.667 2.18 0.00 0.00 4.18
194 195 3.459063 GGCCGGGTAGAGCGACTT 61.459 66.667 2.18 0.00 0.00 3.01
195 196 2.202756 GCCGGGTAGAGCGACTTG 60.203 66.667 2.18 0.00 0.00 3.16
196 197 2.707849 GCCGGGTAGAGCGACTTGA 61.708 63.158 2.18 0.00 0.00 3.02
197 198 2.017559 GCCGGGTAGAGCGACTTGAT 62.018 60.000 2.18 0.00 0.00 2.57
198 199 0.249073 CCGGGTAGAGCGACTTGATG 60.249 60.000 0.00 0.00 0.00 3.07
199 200 0.249073 CGGGTAGAGCGACTTGATGG 60.249 60.000 0.00 0.00 0.00 3.51
200 201 1.112113 GGGTAGAGCGACTTGATGGA 58.888 55.000 0.00 0.00 0.00 3.41
201 202 1.067821 GGGTAGAGCGACTTGATGGAG 59.932 57.143 0.00 0.00 0.00 3.86
202 203 2.025155 GGTAGAGCGACTTGATGGAGA 58.975 52.381 0.00 0.00 0.00 3.71
203 204 2.427453 GGTAGAGCGACTTGATGGAGAA 59.573 50.000 0.00 0.00 0.00 2.87
204 205 2.663826 AGAGCGACTTGATGGAGAAC 57.336 50.000 0.00 0.00 0.00 3.01
205 206 1.205893 AGAGCGACTTGATGGAGAACC 59.794 52.381 0.00 0.00 0.00 3.62
206 207 0.108615 AGCGACTTGATGGAGAACCG 60.109 55.000 0.00 0.00 39.42 4.44
207 208 0.389948 GCGACTTGATGGAGAACCGT 60.390 55.000 0.00 0.00 39.42 4.83
214 215 2.301577 GATGGAGAACCGTCTGAAGG 57.698 55.000 8.14 8.14 45.78 3.46
215 216 0.905357 ATGGAGAACCGTCTGAAGGG 59.095 55.000 14.14 4.63 39.42 3.95
216 217 0.178944 TGGAGAACCGTCTGAAGGGA 60.179 55.000 14.14 0.00 39.42 4.20
217 218 1.196012 GGAGAACCGTCTGAAGGGAT 58.804 55.000 14.14 2.44 32.80 3.85
218 219 1.137282 GGAGAACCGTCTGAAGGGATC 59.863 57.143 14.14 11.13 32.80 3.36
219 220 1.137282 GAGAACCGTCTGAAGGGATCC 59.863 57.143 14.14 1.92 33.89 3.36
220 221 0.902531 GAACCGTCTGAAGGGATCCA 59.097 55.000 15.23 0.00 34.41 3.41
221 222 1.278127 GAACCGTCTGAAGGGATCCAA 59.722 52.381 15.23 0.00 34.41 3.53
222 223 0.905357 ACCGTCTGAAGGGATCCAAG 59.095 55.000 15.23 5.39 34.41 3.61
223 224 0.462759 CCGTCTGAAGGGATCCAAGC 60.463 60.000 15.23 1.86 31.78 4.01
224 225 0.807667 CGTCTGAAGGGATCCAAGCG 60.808 60.000 15.23 9.11 0.00 4.68
225 226 1.092345 GTCTGAAGGGATCCAAGCGC 61.092 60.000 15.23 0.00 0.00 5.92
226 227 1.821332 CTGAAGGGATCCAAGCGCC 60.821 63.158 15.23 0.00 0.00 6.53
227 228 2.272146 GAAGGGATCCAAGCGCCA 59.728 61.111 15.23 0.00 0.00 5.69
228 229 1.378514 GAAGGGATCCAAGCGCCAA 60.379 57.895 15.23 0.00 0.00 4.52
229 230 1.379044 AAGGGATCCAAGCGCCAAG 60.379 57.895 15.23 0.00 0.00 3.61
230 231 1.852157 AAGGGATCCAAGCGCCAAGA 61.852 55.000 15.23 0.00 0.00 3.02
231 232 1.821332 GGGATCCAAGCGCCAAGAG 60.821 63.158 15.23 0.00 0.00 2.85
232 233 1.221840 GGATCCAAGCGCCAAGAGA 59.778 57.895 6.95 0.00 0.00 3.10
233 234 0.179034 GGATCCAAGCGCCAAGAGAT 60.179 55.000 6.95 0.00 0.00 2.75
234 235 1.673168 GATCCAAGCGCCAAGAGATT 58.327 50.000 2.29 0.00 0.00 2.40
235 236 2.485479 GGATCCAAGCGCCAAGAGATTA 60.485 50.000 6.95 0.00 0.00 1.75
236 237 3.406764 GATCCAAGCGCCAAGAGATTAT 58.593 45.455 2.29 0.00 0.00 1.28
237 238 4.563580 GGATCCAAGCGCCAAGAGATTATA 60.564 45.833 6.95 0.00 0.00 0.98
238 239 3.728845 TCCAAGCGCCAAGAGATTATAC 58.271 45.455 2.29 0.00 0.00 1.47
239 240 2.476619 CCAAGCGCCAAGAGATTATACG 59.523 50.000 2.29 0.00 0.00 3.06
240 241 3.381045 CAAGCGCCAAGAGATTATACGA 58.619 45.455 2.29 0.00 0.00 3.43
241 242 3.290308 AGCGCCAAGAGATTATACGAG 57.710 47.619 2.29 0.00 0.00 4.18
242 243 2.623889 AGCGCCAAGAGATTATACGAGT 59.376 45.455 2.29 0.00 0.00 4.18
243 244 2.981140 GCGCCAAGAGATTATACGAGTC 59.019 50.000 0.00 0.00 0.00 3.36
244 245 3.304794 GCGCCAAGAGATTATACGAGTCT 60.305 47.826 0.00 0.00 0.00 3.24
245 246 4.468643 CGCCAAGAGATTATACGAGTCTC 58.531 47.826 0.00 0.00 38.88 3.36
247 248 5.408909 CGCCAAGAGATTATACGAGTCTCTA 59.591 44.000 4.72 0.00 45.85 2.43
248 249 6.092944 CGCCAAGAGATTATACGAGTCTCTAT 59.907 42.308 4.72 0.00 45.85 1.98
249 250 7.469260 GCCAAGAGATTATACGAGTCTCTATC 58.531 42.308 4.72 0.00 45.85 2.08
250 251 7.119992 GCCAAGAGATTATACGAGTCTCTATCA 59.880 40.741 4.72 0.00 45.85 2.15
265 266 5.752955 GTCTCTATCAAAAGAGTCTCATGCC 59.247 44.000 1.94 0.00 43.02 4.40
266 267 5.028549 TCTATCAAAAGAGTCTCATGCCC 57.971 43.478 1.94 0.00 0.00 5.36
268 269 1.089920 CAAAAGAGTCTCATGCCCCG 58.910 55.000 1.94 0.00 0.00 5.73
314 316 9.851686 ATCATACAAATACATCCATACAACACT 57.148 29.630 0.00 0.00 0.00 3.55
318 320 8.856153 ACAAATACATCCATACAACACTACAA 57.144 30.769 0.00 0.00 0.00 2.41
319 321 9.461312 ACAAATACATCCATACAACACTACAAT 57.539 29.630 0.00 0.00 0.00 2.71
334 336 5.119588 ACACTACAATACAATACACGCACAC 59.880 40.000 0.00 0.00 0.00 3.82
348 350 2.028476 ACGCACACAAGGCTAGATACAA 60.028 45.455 0.00 0.00 0.00 2.41
365 367 7.687941 AGATACAAGGGTGTTAATGAACAAG 57.312 36.000 0.00 0.00 46.99 3.16
398 401 5.334879 CCATAACACTCCAAGCAAACTACAC 60.335 44.000 0.00 0.00 0.00 2.90
407 410 0.796927 GCAAACTACACGAGGAAGCC 59.203 55.000 0.00 0.00 0.00 4.35
412 415 0.454600 CTACACGAGGAAGCCGCTTA 59.545 55.000 5.38 0.00 0.00 3.09
437 451 2.125912 CGGAGCTCTCAACCACCG 60.126 66.667 14.64 2.35 34.77 4.94
439 453 2.343758 GAGCTCTCAACCACCGCA 59.656 61.111 6.43 0.00 0.00 5.69
441 455 0.884704 GAGCTCTCAACCACCGCAAA 60.885 55.000 6.43 0.00 0.00 3.68
473 501 2.047655 TACTCCAAAGTGGCGCCG 60.048 61.111 23.90 6.63 37.47 6.46
475 503 2.775032 TACTCCAAAGTGGCGCCGTC 62.775 60.000 23.90 17.58 37.47 4.79
481 509 1.507141 AAAGTGGCGCCGTCAAGAAG 61.507 55.000 23.90 0.00 0.00 2.85
491 519 1.557443 CGTCAAGAAGGGCACGACAC 61.557 60.000 0.00 0.00 34.06 3.67
492 520 0.531974 GTCAAGAAGGGCACGACACA 60.532 55.000 0.00 0.00 0.00 3.72
494 522 1.071471 AAGAAGGGCACGACACAGG 59.929 57.895 0.00 0.00 0.00 4.00
495 523 1.407656 AAGAAGGGCACGACACAGGA 61.408 55.000 0.00 0.00 0.00 3.86
496 524 1.070786 GAAGGGCACGACACAGGAA 59.929 57.895 0.00 0.00 0.00 3.36
499 527 3.712881 GGCACGACACAGGAACGC 61.713 66.667 0.00 0.00 0.00 4.84
521 549 0.108138 CCACCGTCTGATCCAAGGAC 60.108 60.000 0.00 0.00 0.00 3.85
526 554 1.550524 CGTCTGATCCAAGGACCAAGA 59.449 52.381 0.00 0.00 0.00 3.02
535 563 2.041620 CCAAGGACCAAGATTTCCCTCA 59.958 50.000 0.00 0.00 31.51 3.86
542 570 4.162651 ACCAAGATTTCCCTCAAAGCAAT 58.837 39.130 0.00 0.00 32.36 3.56
759 789 1.338674 CCTCTGTCGTGCAACCCAATA 60.339 52.381 0.00 0.00 0.00 1.90
775 805 6.262056 ACCCAATATAAGGAACCAGGTAAG 57.738 41.667 0.00 0.00 0.00 2.34
787 817 1.073216 CAGGTAAGCGCGTGTCTCTG 61.073 60.000 8.43 7.22 0.00 3.35
803 833 6.622549 GTGTCTCTGTGTATACTAAAGCAGT 58.377 40.000 4.17 0.00 41.62 4.40
827 857 7.880195 AGTTTTATAGATATCCTGGTGATGTGC 59.120 37.037 0.00 0.00 34.76 4.57
838 868 1.129251 GGTGATGTGCACTGATTGTCG 59.871 52.381 19.41 0.00 46.86 4.35
857 887 2.032377 TCGCTTTCACGTTTGAATGGTC 60.032 45.455 0.00 0.00 41.50 4.02
888 918 5.841810 ACTGATAAGATCTAAGCTGAGCAC 58.158 41.667 7.39 0.00 0.00 4.40
999 1029 1.478510 TCTTCCTTCAGATCTCACGCC 59.521 52.381 0.00 0.00 0.00 5.68
1017 1047 0.036010 CCATGGCGGTCCTCATATCC 60.036 60.000 0.00 0.00 0.00 2.59
1021 1051 1.587054 GCGGTCCTCATATCCTCCG 59.413 63.158 0.00 0.00 40.72 4.63
1026 1056 1.048601 TCCTCATATCCTCCGTTGCC 58.951 55.000 0.00 0.00 0.00 4.52
1089 1119 3.476552 TCGAAGGAGCACAGTTTCATTT 58.523 40.909 0.00 0.00 0.00 2.32
1096 1126 2.294233 AGCACAGTTTCATTTGCATCGT 59.706 40.909 0.00 0.00 37.44 3.73
1125 1155 1.729881 GCGGATCCTTGCCATGAAC 59.270 57.895 10.75 0.00 0.00 3.18
1197 1227 2.352960 GCCTTCTTGTTCTTAGGATGCG 59.647 50.000 0.00 0.00 0.00 4.73
1234 1264 7.033791 AGATCGTTCAGTATATTTCACGTGTT 58.966 34.615 16.51 4.59 0.00 3.32
1235 1265 6.384178 TCGTTCAGTATATTTCACGTGTTG 57.616 37.500 16.51 3.14 0.00 3.33
1249 1279 3.315191 CACGTGTTGTTTTCAGAATCCCT 59.685 43.478 7.58 0.00 0.00 4.20
1267 1297 4.666253 GCAGCTGTTCCAGGCCCA 62.666 66.667 16.64 0.00 31.21 5.36
1272 1302 1.246737 GCTGTTCCAGGCCCAGAAAG 61.247 60.000 9.85 9.20 31.21 2.62
1340 1370 1.677552 CAGAGGGGTTACGGTTGCT 59.322 57.895 0.00 0.00 0.00 3.91
1342 1372 0.544595 AGAGGGGTTACGGTTGCTCT 60.545 55.000 0.00 0.00 0.00 4.09
1366 1400 2.257974 TCGTCGATTTCCTTCTCACG 57.742 50.000 0.00 0.00 0.00 4.35
1393 1429 2.111384 GGCTATGTGGTTCTCTCAGGA 58.889 52.381 0.00 0.00 0.00 3.86
1407 1443 1.276421 CTCAGGATGACCTTGGTCGTT 59.724 52.381 14.85 5.51 45.36 3.85
1413 1449 1.525077 GACCTTGGTCGTTGGTGCA 60.525 57.895 3.87 0.00 33.74 4.57
1425 1461 1.723608 TTGGTGCAGTCCTTGTTGCG 61.724 55.000 0.00 0.00 43.13 4.85
1431 1467 1.676014 GCAGTCCTTGTTGCGATACCT 60.676 52.381 0.00 0.00 0.00 3.08
1462 1498 7.050377 CAGAAAGATAAGAGCATTGGAAGGTA 58.950 38.462 0.00 0.00 0.00 3.08
1471 1507 6.248433 AGAGCATTGGAAGGTAAAATCTGAA 58.752 36.000 0.00 0.00 0.00 3.02
1501 1537 3.985279 TGCACGACTTCTGTACATGTTAC 59.015 43.478 2.30 0.95 0.00 2.50
1536 1572 3.362831 GCGTGCATTTTCATCTCAACTTG 59.637 43.478 0.00 0.00 0.00 3.16
1554 1590 6.824196 TCAACTTGTGTCTGTGGTTGTAATTA 59.176 34.615 0.00 0.00 38.53 1.40
1611 1647 1.520787 GGTGGCGGTCGAGGTAATG 60.521 63.158 0.00 0.00 0.00 1.90
1741 1777 1.152652 ATCGAGGAGGATGCCGAGT 60.153 57.895 0.00 0.00 33.52 4.18
1742 1778 0.757188 ATCGAGGAGGATGCCGAGTT 60.757 55.000 0.00 0.00 33.52 3.01
1752 1788 4.893601 GCCGAGTTAGCCGAGGCC 62.894 72.222 10.95 0.00 41.81 5.19
1892 1928 3.127030 GTGTTGCTTAACTAGGTCATGGC 59.873 47.826 0.00 0.00 0.00 4.40
1978 2014 6.656632 TCTAGAGTTATAGGGACAAGCATG 57.343 41.667 0.00 0.00 0.00 4.06
1979 2015 6.136857 TCTAGAGTTATAGGGACAAGCATGT 58.863 40.000 0.00 0.00 44.25 3.21
1980 2016 5.700402 AGAGTTATAGGGACAAGCATGTT 57.300 39.130 0.00 0.00 40.74 2.71
1981 2017 6.067217 AGAGTTATAGGGACAAGCATGTTT 57.933 37.500 0.00 0.00 40.74 2.83
1982 2018 6.485171 AGAGTTATAGGGACAAGCATGTTTT 58.515 36.000 0.00 0.00 40.74 2.43
1983 2019 6.948309 AGAGTTATAGGGACAAGCATGTTTTT 59.052 34.615 0.00 0.00 40.74 1.94
2002 2038 3.436577 TTTTTGCGGGTAATAGGGACA 57.563 42.857 0.00 0.00 0.00 4.02
2003 2039 3.436577 TTTTGCGGGTAATAGGGACAA 57.563 42.857 0.00 0.00 0.00 3.18
2004 2040 2.702592 TTGCGGGTAATAGGGACAAG 57.297 50.000 0.00 0.00 0.00 3.16
2005 2041 0.179468 TGCGGGTAATAGGGACAAGC 59.821 55.000 0.00 0.00 0.00 4.01
2006 2042 0.179468 GCGGGTAATAGGGACAAGCA 59.821 55.000 0.00 0.00 0.00 3.91
2007 2043 1.202770 GCGGGTAATAGGGACAAGCAT 60.203 52.381 0.00 0.00 0.00 3.79
2053 2089 3.649073 TGTGTAGCGGATATCCAATTCG 58.351 45.455 21.70 8.14 35.14 3.34
2093 2129 4.148174 GCTCCTGCGTGTTAAAAATGTTTC 59.852 41.667 0.00 0.00 0.00 2.78
2132 2169 6.710744 AGACCACGAAGAAAAATTAGACATGT 59.289 34.615 0.00 0.00 0.00 3.21
2166 2203 6.563422 TGTCTAAATGTTATCTGCAAATGCC 58.437 36.000 2.46 0.00 41.18 4.40
2172 2209 0.925558 TATCTGCAAATGCCCAGGGA 59.074 50.000 10.89 0.00 41.18 4.20
2209 2246 9.033481 TCATTTTTAACTTGTGCAGAAAATCAG 57.967 29.630 0.00 0.00 0.00 2.90
2211 2248 3.375782 AACTTGTGCAGAAAATCAGGC 57.624 42.857 0.00 0.00 0.00 4.85
2297 2334 1.738350 TGTCCAGTTTCGCGTGAAAAA 59.262 42.857 24.56 8.97 45.22 1.94
2454 2613 9.851686 TGGAAGCTAGTAAATGTGATGATATTT 57.148 29.630 0.00 0.00 0.00 1.40
2519 2679 2.224426 TGGTTAACGCAGGTTGATGAGT 60.224 45.455 0.00 0.00 36.90 3.41
2531 2691 5.926542 CAGGTTGATGAGTTAACGAAAGAGA 59.073 40.000 0.00 0.00 0.00 3.10
2569 2729 3.501062 GTCCTATCATCGACGTGGTCATA 59.499 47.826 0.00 0.00 32.09 2.15
2594 2754 2.422127 GAGAGTGGAGAAAGAGGAGTCG 59.578 54.545 0.00 0.00 0.00 4.18
2614 2774 4.082136 GTCGTAGATGAAGAACCCAAGAGT 60.082 45.833 0.00 0.00 40.67 3.24
2621 2781 7.694093 AGATGAAGAACCCAAGAGTAAAGAAT 58.306 34.615 0.00 0.00 0.00 2.40
2657 2817 3.252458 AGAAACATGTCTTACCGGCAAAC 59.748 43.478 0.00 0.00 0.00 2.93
2685 2845 1.269166 CTAGTCGTCAACCGTGCATC 58.731 55.000 0.00 0.00 37.94 3.91
2741 2902 6.755141 GTCGATAAATAACCAGTAACAGCTCA 59.245 38.462 0.00 0.00 0.00 4.26
2856 3019 8.075593 GTGTTTACAAAGAGGTAAATACACGA 57.924 34.615 15.91 0.00 46.15 4.35
2857 3020 8.219105 GTGTTTACAAAGAGGTAAATACACGAG 58.781 37.037 15.91 0.00 46.15 4.18
2858 3021 8.143193 TGTTTACAAAGAGGTAAATACACGAGA 58.857 33.333 0.00 0.00 43.04 4.04
2859 3022 9.148104 GTTTACAAAGAGGTAAATACACGAGAT 57.852 33.333 0.00 0.00 43.04 2.75
2861 3024 9.793252 TTACAAAGAGGTAAATACACGAGATAC 57.207 33.333 0.00 0.00 30.68 2.24
2875 3038 4.938171 CGAGATACGTTAGAGCATGTTG 57.062 45.455 0.00 0.00 37.22 3.33
2876 3039 3.731216 CGAGATACGTTAGAGCATGTTGG 59.269 47.826 0.00 0.00 37.22 3.77
2877 3040 4.683832 GAGATACGTTAGAGCATGTTGGT 58.316 43.478 0.00 0.00 0.00 3.67
2878 3041 5.086104 AGATACGTTAGAGCATGTTGGTT 57.914 39.130 0.00 0.00 0.00 3.67
2879 3042 5.488341 AGATACGTTAGAGCATGTTGGTTT 58.512 37.500 0.00 0.00 0.00 3.27
2880 3043 3.896648 ACGTTAGAGCATGTTGGTTTG 57.103 42.857 0.00 0.00 0.00 2.93
2881 3044 3.472652 ACGTTAGAGCATGTTGGTTTGA 58.527 40.909 0.00 0.00 0.00 2.69
2882 3045 4.072131 ACGTTAGAGCATGTTGGTTTGAT 58.928 39.130 0.00 0.00 0.00 2.57
2883 3046 4.083324 ACGTTAGAGCATGTTGGTTTGATG 60.083 41.667 0.00 0.00 0.00 3.07
2884 3047 4.168760 GTTAGAGCATGTTGGTTTGATGC 58.831 43.478 0.00 0.00 42.37 3.91
2885 3048 1.547372 AGAGCATGTTGGTTTGATGCC 59.453 47.619 0.00 0.00 42.93 4.40
2886 3049 1.273048 GAGCATGTTGGTTTGATGCCA 59.727 47.619 0.00 0.00 42.93 4.92
2887 3050 1.693062 AGCATGTTGGTTTGATGCCAA 59.307 42.857 0.00 0.00 42.93 4.52
2888 3051 2.104451 AGCATGTTGGTTTGATGCCAAA 59.896 40.909 0.00 0.00 46.21 3.28
2889 3052 2.877168 GCATGTTGGTTTGATGCCAAAA 59.123 40.909 0.00 0.00 46.21 2.44
2890 3053 3.314635 GCATGTTGGTTTGATGCCAAAAA 59.685 39.130 0.00 0.00 46.21 1.94
2891 3054 4.023021 GCATGTTGGTTTGATGCCAAAAAT 60.023 37.500 0.00 0.00 46.21 1.82
2892 3055 5.507650 GCATGTTGGTTTGATGCCAAAAATT 60.508 36.000 0.00 0.00 46.21 1.82
2893 3056 5.496133 TGTTGGTTTGATGCCAAAAATTG 57.504 34.783 0.00 0.00 46.21 2.32
2909 3072 8.041829 CCAAAAATTGGCATGTCAATATTTGA 57.958 30.769 25.02 0.00 45.17 2.69
2924 3087 8.618702 TCAATATTTGACAAATGCCAAATGTT 57.381 26.923 21.21 12.52 41.47 2.71
2925 3088 8.662369 CAATATTTGACAAATGCCAAATGTTG 57.338 30.769 20.89 20.89 45.72 3.33
2926 3089 6.798315 TATTTGACAAATGCCAAATGTTGG 57.202 33.333 21.21 2.50 41.45 3.77
2938 3101 5.659440 CCAAATGTTGGCTAGTAATTGGT 57.341 39.130 0.00 0.00 45.17 3.67
2939 3102 6.036577 CCAAATGTTGGCTAGTAATTGGTT 57.963 37.500 0.00 0.00 45.17 3.67
2940 3103 5.868801 CCAAATGTTGGCTAGTAATTGGTTG 59.131 40.000 0.00 0.00 45.17 3.77
2941 3104 6.295011 CCAAATGTTGGCTAGTAATTGGTTGA 60.295 38.462 0.00 0.00 45.17 3.18
2942 3105 5.897377 ATGTTGGCTAGTAATTGGTTGAC 57.103 39.130 0.00 0.00 0.00 3.18
2943 3106 4.980573 TGTTGGCTAGTAATTGGTTGACT 58.019 39.130 0.00 0.00 0.00 3.41
2944 3107 6.116711 TGTTGGCTAGTAATTGGTTGACTA 57.883 37.500 0.00 0.00 0.00 2.59
2945 3108 5.935789 TGTTGGCTAGTAATTGGTTGACTAC 59.064 40.000 0.00 0.00 0.00 2.73
2984 3147 3.645268 ATCTTCAGCCGTTGCCCCC 62.645 63.158 0.00 0.00 38.69 5.40
3012 3175 3.016736 CCACAGGAGGCATAAAAATCGT 58.983 45.455 0.00 0.00 0.00 3.73
3016 3179 1.940613 GGAGGCATAAAAATCGTCGCT 59.059 47.619 0.00 0.00 0.00 4.93
3018 3181 3.558418 GGAGGCATAAAAATCGTCGCTTA 59.442 43.478 0.00 0.00 0.00 3.09
3043 3206 2.151049 GAGCCGGCGGTATAATCGGT 62.151 60.000 28.82 3.54 43.87 4.69
3048 3211 1.001048 CGGCGGTATAATCGGTTCTGA 60.001 52.381 0.00 0.00 0.00 3.27
3159 3345 3.995199 GAGAATCGACCCATATTCAGCA 58.005 45.455 0.00 0.00 35.07 4.41
3164 3350 2.969262 TCGACCCATATTCAGCATGGTA 59.031 45.455 0.00 0.00 41.26 3.25
3321 3512 4.993905 TCATATTTCATCACACGTCGAGT 58.006 39.130 0.00 0.00 0.00 4.18
3362 3553 4.657504 TCTTCATAGATGCTCCACCAGATT 59.342 41.667 0.00 0.00 0.00 2.40
3368 3559 1.571955 TGCTCCACCAGATTCTGCTA 58.428 50.000 8.23 0.00 0.00 3.49
3371 3562 3.711190 TGCTCCACCAGATTCTGCTATAA 59.289 43.478 8.23 0.00 0.00 0.98
3403 3594 1.594833 CGTGGGTTTCGGATCTCCA 59.405 57.895 0.00 0.00 35.14 3.86
3461 3656 1.962807 CTGGTGATCAACTTGGGCAAA 59.037 47.619 12.94 0.00 0.00 3.68
3472 3667 2.118294 GGGCAAAAGGACCCTGCT 59.882 61.111 9.88 0.00 43.36 4.24
3486 3681 2.093658 ACCCTGCTTGTAGTATGGTTCG 60.094 50.000 0.00 0.00 25.29 3.95
3496 3691 2.409975 AGTATGGTTCGGTGTCAAACG 58.590 47.619 0.00 0.00 0.00 3.60
3525 3720 1.483827 TCCTGCTCGCTCTCAATGATT 59.516 47.619 0.00 0.00 0.00 2.57
3582 3777 3.505680 CCCACATTTGATCTTTCGACCAA 59.494 43.478 0.00 0.00 0.00 3.67
3587 3782 5.765182 ACATTTGATCTTTCGACCAAGTCTT 59.235 36.000 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.930204 TCTATGTGGGACAGAGGAGGA 59.070 52.381 0.00 0.00 41.80 3.71
13 14 3.944476 GCCTATGCCCTCTATGTGG 57.056 57.895 0.00 0.00 0.00 4.17
24 25 2.423446 CCTGGAGACGGCCTATGC 59.577 66.667 0.00 0.00 34.42 3.14
25 26 3.142393 CCCTGGAGACGGCCTATG 58.858 66.667 0.00 0.00 34.42 2.23
26 27 2.844839 GCCCTGGAGACGGCCTAT 60.845 66.667 0.00 0.00 39.39 2.57
30 31 3.645268 AAATGGCCCTGGAGACGGC 62.645 63.158 0.00 0.00 44.92 5.68
31 32 1.452108 GAAATGGCCCTGGAGACGG 60.452 63.158 0.00 0.00 0.00 4.79
32 33 1.815421 CGAAATGGCCCTGGAGACG 60.815 63.158 0.00 0.00 0.00 4.18
33 34 2.115291 GCGAAATGGCCCTGGAGAC 61.115 63.158 0.00 0.00 0.00 3.36
34 35 1.852157 AAGCGAAATGGCCCTGGAGA 61.852 55.000 0.00 0.00 0.00 3.71
35 36 1.379044 AAGCGAAATGGCCCTGGAG 60.379 57.895 0.00 0.00 0.00 3.86
36 37 1.678635 CAAGCGAAATGGCCCTGGA 60.679 57.895 0.00 0.00 0.00 3.86
37 38 1.660560 CTCAAGCGAAATGGCCCTGG 61.661 60.000 0.00 0.00 0.00 4.45
38 39 1.805254 CTCAAGCGAAATGGCCCTG 59.195 57.895 0.00 0.00 0.00 4.45
39 40 2.048603 GCTCAAGCGAAATGGCCCT 61.049 57.895 0.00 0.00 0.00 5.19
40 41 2.342650 TGCTCAAGCGAAATGGCCC 61.343 57.895 0.00 0.00 45.83 5.80
41 42 1.153958 GTGCTCAAGCGAAATGGCC 60.154 57.895 0.00 0.00 45.83 5.36
42 43 1.153958 GGTGCTCAAGCGAAATGGC 60.154 57.895 0.00 0.00 45.83 4.40
43 44 0.883833 AAGGTGCTCAAGCGAAATGG 59.116 50.000 0.00 0.00 45.83 3.16
44 45 1.536766 TGAAGGTGCTCAAGCGAAATG 59.463 47.619 0.00 0.00 45.83 2.32
45 46 1.537202 GTGAAGGTGCTCAAGCGAAAT 59.463 47.619 0.00 0.00 45.83 2.17
46 47 0.944386 GTGAAGGTGCTCAAGCGAAA 59.056 50.000 0.00 0.00 45.83 3.46
47 48 1.221466 CGTGAAGGTGCTCAAGCGAA 61.221 55.000 0.00 0.00 45.83 4.70
48 49 1.664649 CGTGAAGGTGCTCAAGCGA 60.665 57.895 0.00 0.00 45.83 4.93
49 50 2.856032 CGTGAAGGTGCTCAAGCG 59.144 61.111 0.00 0.00 45.83 4.68
50 51 2.558313 GCGTGAAGGTGCTCAAGC 59.442 61.111 0.00 0.00 42.22 4.01
51 52 1.572085 CTGGCGTGAAGGTGCTCAAG 61.572 60.000 0.00 0.00 0.00 3.02
52 53 1.597854 CTGGCGTGAAGGTGCTCAA 60.598 57.895 0.00 0.00 0.00 3.02
53 54 2.031012 CTGGCGTGAAGGTGCTCA 59.969 61.111 0.00 0.00 0.00 4.26
54 55 1.739562 CTCTGGCGTGAAGGTGCTC 60.740 63.158 0.00 0.00 0.00 4.26
55 56 2.345244 CTCTGGCGTGAAGGTGCT 59.655 61.111 0.00 0.00 0.00 4.40
56 57 2.743928 CCTCTGGCGTGAAGGTGC 60.744 66.667 0.00 0.00 0.00 5.01
57 58 2.046892 CCCTCTGGCGTGAAGGTG 60.047 66.667 0.00 0.00 0.00 4.00
58 59 2.203788 TCCCTCTGGCGTGAAGGT 60.204 61.111 0.00 0.00 0.00 3.50
59 60 0.970937 TACTCCCTCTGGCGTGAAGG 60.971 60.000 0.00 0.00 30.56 3.46
60 61 0.173708 GTACTCCCTCTGGCGTGAAG 59.826 60.000 0.00 0.00 30.56 3.02
61 62 1.592400 CGTACTCCCTCTGGCGTGAA 61.592 60.000 0.00 0.00 30.56 3.18
62 63 2.044555 CGTACTCCCTCTGGCGTGA 61.045 63.158 0.00 0.00 30.56 4.35
63 64 2.490217 CGTACTCCCTCTGGCGTG 59.510 66.667 0.00 0.00 30.56 5.34
64 65 2.754658 CCGTACTCCCTCTGGCGT 60.755 66.667 0.00 0.00 33.19 5.68
65 66 4.208686 GCCGTACTCCCTCTGGCG 62.209 72.222 0.00 0.00 35.77 5.69
66 67 3.851128 GGCCGTACTCCCTCTGGC 61.851 72.222 0.00 0.00 44.98 4.85
67 68 2.042843 AGGCCGTACTCCCTCTGG 60.043 66.667 0.00 0.00 0.00 3.86
68 69 2.482333 CGAGGCCGTACTCCCTCTG 61.482 68.421 20.02 12.91 44.35 3.35
69 70 2.124236 CGAGGCCGTACTCCCTCT 60.124 66.667 20.02 0.51 44.35 3.69
70 71 2.980105 ATCCGAGGCCGTACTCCCTC 62.980 65.000 15.17 15.17 43.35 4.30
71 72 2.980105 GATCCGAGGCCGTACTCCCT 62.980 65.000 0.00 1.22 33.93 4.20
72 73 2.521224 ATCCGAGGCCGTACTCCC 60.521 66.667 0.00 0.00 33.93 4.30
73 74 2.562876 GGATCCGAGGCCGTACTCC 61.563 68.421 0.00 0.00 33.93 3.85
74 75 1.179814 ATGGATCCGAGGCCGTACTC 61.180 60.000 7.39 0.00 0.00 2.59
75 76 0.759436 AATGGATCCGAGGCCGTACT 60.759 55.000 7.39 0.00 0.00 2.73
76 77 0.600255 CAATGGATCCGAGGCCGTAC 60.600 60.000 7.39 0.00 0.00 3.67
77 78 1.745890 CAATGGATCCGAGGCCGTA 59.254 57.895 7.39 0.00 0.00 4.02
78 79 2.505982 CAATGGATCCGAGGCCGT 59.494 61.111 7.39 0.00 0.00 5.68
79 80 2.974698 GCAATGGATCCGAGGCCG 60.975 66.667 7.39 0.00 0.00 6.13
80 81 2.595754 GGCAATGGATCCGAGGCC 60.596 66.667 20.41 20.41 0.00 5.19
81 82 2.189499 GTGGCAATGGATCCGAGGC 61.189 63.158 7.39 11.97 0.00 4.70
82 83 0.816825 CTGTGGCAATGGATCCGAGG 60.817 60.000 7.39 0.00 0.00 4.63
83 84 0.816825 CCTGTGGCAATGGATCCGAG 60.817 60.000 7.39 0.01 0.00 4.63
84 85 1.224315 CCTGTGGCAATGGATCCGA 59.776 57.895 7.39 0.00 0.00 4.55
85 86 0.394216 TTCCTGTGGCAATGGATCCG 60.394 55.000 7.39 0.00 0.00 4.18
86 87 2.077687 ATTCCTGTGGCAATGGATCC 57.922 50.000 4.20 4.20 0.00 3.36
87 88 4.458295 CAGATATTCCTGTGGCAATGGATC 59.542 45.833 10.01 5.97 0.00 3.36
88 89 4.105217 TCAGATATTCCTGTGGCAATGGAT 59.895 41.667 10.01 4.60 35.71 3.41
89 90 3.459227 TCAGATATTCCTGTGGCAATGGA 59.541 43.478 5.72 5.72 35.71 3.41
90 91 3.824133 TCAGATATTCCTGTGGCAATGG 58.176 45.455 0.00 0.00 35.71 3.16
91 92 5.768662 AGATTCAGATATTCCTGTGGCAATG 59.231 40.000 0.00 0.00 35.71 2.82
92 93 5.950023 AGATTCAGATATTCCTGTGGCAAT 58.050 37.500 0.00 0.00 35.71 3.56
93 94 5.378230 AGATTCAGATATTCCTGTGGCAA 57.622 39.130 0.00 0.00 35.71 4.52
94 95 5.104402 TGAAGATTCAGATATTCCTGTGGCA 60.104 40.000 0.00 0.00 33.55 4.92
95 96 5.371526 TGAAGATTCAGATATTCCTGTGGC 58.628 41.667 0.00 0.00 33.55 5.01
109 110 2.649742 AGACTCCCCCTGAAGATTCA 57.350 50.000 0.00 0.00 35.57 2.57
110 111 4.904853 AGATTAGACTCCCCCTGAAGATTC 59.095 45.833 0.00 0.00 0.00 2.52
111 112 4.901927 AGATTAGACTCCCCCTGAAGATT 58.098 43.478 0.00 0.00 0.00 2.40
112 113 4.488770 GAGATTAGACTCCCCCTGAAGAT 58.511 47.826 0.00 0.00 0.00 2.40
113 114 3.917300 GAGATTAGACTCCCCCTGAAGA 58.083 50.000 0.00 0.00 0.00 2.87
123 124 3.536570 GCAGGTTTGGGAGATTAGACTC 58.463 50.000 0.00 0.00 36.31 3.36
124 125 2.093447 CGCAGGTTTGGGAGATTAGACT 60.093 50.000 0.00 0.00 39.46 3.24
125 126 2.280628 CGCAGGTTTGGGAGATTAGAC 58.719 52.381 0.00 0.00 39.46 2.59
126 127 1.406887 GCGCAGGTTTGGGAGATTAGA 60.407 52.381 0.30 0.00 39.46 2.10
127 128 1.017387 GCGCAGGTTTGGGAGATTAG 58.983 55.000 0.30 0.00 39.46 1.73
128 129 0.326595 TGCGCAGGTTTGGGAGATTA 59.673 50.000 5.66 0.00 39.46 1.75
129 130 0.539438 TTGCGCAGGTTTGGGAGATT 60.539 50.000 11.31 0.00 39.46 2.40
130 131 0.539438 TTTGCGCAGGTTTGGGAGAT 60.539 50.000 11.31 0.00 39.46 2.75
131 132 1.152860 TTTGCGCAGGTTTGGGAGA 60.153 52.632 11.31 0.00 39.46 3.71
132 133 1.286880 CTTTGCGCAGGTTTGGGAG 59.713 57.895 11.31 0.00 39.46 4.30
133 134 2.199652 CCTTTGCGCAGGTTTGGGA 61.200 57.895 11.31 0.00 39.46 4.37
134 135 2.339712 CCTTTGCGCAGGTTTGGG 59.660 61.111 11.31 4.14 40.04 4.12
135 136 2.339712 CCCTTTGCGCAGGTTTGG 59.660 61.111 11.31 9.54 30.96 3.28
136 137 2.356194 GCCCTTTGCGCAGGTTTG 60.356 61.111 11.31 0.55 30.96 2.93
170 171 4.849310 TCTACCCGGCCATTGCGC 62.849 66.667 2.24 0.00 38.85 6.09
171 172 2.588877 CTCTACCCGGCCATTGCG 60.589 66.667 2.24 0.00 38.85 4.85
172 173 2.902343 GCTCTACCCGGCCATTGC 60.902 66.667 2.24 0.00 0.00 3.56
173 174 2.588877 CGCTCTACCCGGCCATTG 60.589 66.667 2.24 0.00 0.00 2.82
174 175 2.762459 TCGCTCTACCCGGCCATT 60.762 61.111 2.24 0.00 0.00 3.16
175 176 3.537874 GTCGCTCTACCCGGCCAT 61.538 66.667 2.24 0.00 0.00 4.40
176 177 4.753662 AGTCGCTCTACCCGGCCA 62.754 66.667 2.24 0.00 0.00 5.36
177 178 3.459063 AAGTCGCTCTACCCGGCC 61.459 66.667 0.00 0.00 0.00 6.13
178 179 2.017559 ATCAAGTCGCTCTACCCGGC 62.018 60.000 0.00 0.00 0.00 6.13
179 180 0.249073 CATCAAGTCGCTCTACCCGG 60.249 60.000 0.00 0.00 0.00 5.73
180 181 0.249073 CCATCAAGTCGCTCTACCCG 60.249 60.000 0.00 0.00 0.00 5.28
181 182 1.067821 CTCCATCAAGTCGCTCTACCC 59.932 57.143 0.00 0.00 0.00 3.69
182 183 2.025155 TCTCCATCAAGTCGCTCTACC 58.975 52.381 0.00 0.00 0.00 3.18
183 184 3.440228 GTTCTCCATCAAGTCGCTCTAC 58.560 50.000 0.00 0.00 0.00 2.59
184 185 2.427453 GGTTCTCCATCAAGTCGCTCTA 59.573 50.000 0.00 0.00 0.00 2.43
185 186 1.205893 GGTTCTCCATCAAGTCGCTCT 59.794 52.381 0.00 0.00 0.00 4.09
186 187 1.646189 GGTTCTCCATCAAGTCGCTC 58.354 55.000 0.00 0.00 0.00 5.03
187 188 0.108615 CGGTTCTCCATCAAGTCGCT 60.109 55.000 0.00 0.00 0.00 4.93
188 189 0.389948 ACGGTTCTCCATCAAGTCGC 60.390 55.000 0.00 0.00 0.00 5.19
189 190 1.202582 AGACGGTTCTCCATCAAGTCG 59.797 52.381 0.00 0.00 32.96 4.18
190 191 2.231478 TCAGACGGTTCTCCATCAAGTC 59.769 50.000 0.00 0.00 0.00 3.01
191 192 2.248248 TCAGACGGTTCTCCATCAAGT 58.752 47.619 0.00 0.00 0.00 3.16
192 193 3.257393 CTTCAGACGGTTCTCCATCAAG 58.743 50.000 0.00 0.00 0.00 3.02
193 194 2.028112 CCTTCAGACGGTTCTCCATCAA 60.028 50.000 0.00 0.00 0.00 2.57
194 195 1.550524 CCTTCAGACGGTTCTCCATCA 59.449 52.381 0.00 0.00 0.00 3.07
195 196 1.134670 CCCTTCAGACGGTTCTCCATC 60.135 57.143 0.00 0.00 0.00 3.51
196 197 0.905357 CCCTTCAGACGGTTCTCCAT 59.095 55.000 0.00 0.00 0.00 3.41
197 198 0.178944 TCCCTTCAGACGGTTCTCCA 60.179 55.000 0.00 0.00 0.00 3.86
198 199 1.137282 GATCCCTTCAGACGGTTCTCC 59.863 57.143 0.00 0.00 0.00 3.71
199 200 1.137282 GGATCCCTTCAGACGGTTCTC 59.863 57.143 0.00 0.00 0.00 2.87
200 201 1.196012 GGATCCCTTCAGACGGTTCT 58.804 55.000 0.00 0.00 0.00 3.01
201 202 0.902531 TGGATCCCTTCAGACGGTTC 59.097 55.000 9.90 0.00 0.00 3.62
202 203 1.279271 CTTGGATCCCTTCAGACGGTT 59.721 52.381 9.90 0.00 0.00 4.44
203 204 0.905357 CTTGGATCCCTTCAGACGGT 59.095 55.000 9.90 0.00 0.00 4.83
204 205 0.462759 GCTTGGATCCCTTCAGACGG 60.463 60.000 9.90 0.00 0.00 4.79
205 206 0.807667 CGCTTGGATCCCTTCAGACG 60.808 60.000 9.90 4.89 0.00 4.18
206 207 1.092345 GCGCTTGGATCCCTTCAGAC 61.092 60.000 9.90 0.00 0.00 3.51
207 208 1.221840 GCGCTTGGATCCCTTCAGA 59.778 57.895 9.90 0.00 0.00 3.27
208 209 1.821332 GGCGCTTGGATCCCTTCAG 60.821 63.158 9.90 1.05 0.00 3.02
209 210 2.135903 TTGGCGCTTGGATCCCTTCA 62.136 55.000 9.90 0.00 0.00 3.02
210 211 1.378514 TTGGCGCTTGGATCCCTTC 60.379 57.895 9.90 0.00 0.00 3.46
211 212 1.379044 CTTGGCGCTTGGATCCCTT 60.379 57.895 9.90 0.00 0.00 3.95
212 213 2.262774 CTCTTGGCGCTTGGATCCCT 62.263 60.000 9.90 0.00 0.00 4.20
213 214 1.821332 CTCTTGGCGCTTGGATCCC 60.821 63.158 9.90 0.00 0.00 3.85
214 215 0.179034 ATCTCTTGGCGCTTGGATCC 60.179 55.000 7.64 4.20 0.00 3.36
215 216 1.673168 AATCTCTTGGCGCTTGGATC 58.327 50.000 7.64 0.00 0.00 3.36
216 217 3.498774 ATAATCTCTTGGCGCTTGGAT 57.501 42.857 7.64 1.76 0.00 3.41
217 218 3.728845 GTATAATCTCTTGGCGCTTGGA 58.271 45.455 7.64 1.78 0.00 3.53
218 219 2.476619 CGTATAATCTCTTGGCGCTTGG 59.523 50.000 7.64 0.00 0.00 3.61
219 220 3.381045 TCGTATAATCTCTTGGCGCTTG 58.619 45.455 7.64 0.00 0.00 4.01
220 221 3.068307 ACTCGTATAATCTCTTGGCGCTT 59.932 43.478 7.64 0.00 0.00 4.68
221 222 2.623889 ACTCGTATAATCTCTTGGCGCT 59.376 45.455 7.64 0.00 0.00 5.92
222 223 2.981140 GACTCGTATAATCTCTTGGCGC 59.019 50.000 0.00 0.00 0.00 6.53
223 224 4.214545 AGAGACTCGTATAATCTCTTGGCG 59.785 45.833 0.00 0.00 45.52 5.69
224 225 5.699097 AGAGACTCGTATAATCTCTTGGC 57.301 43.478 0.00 0.00 45.52 4.52
225 226 8.554835 TGATAGAGACTCGTATAATCTCTTGG 57.445 38.462 8.20 0.00 45.52 3.61
233 234 9.616156 AGACTCTTTTGATAGAGACTCGTATAA 57.384 33.333 7.59 0.00 41.32 0.98
234 235 9.263538 GAGACTCTTTTGATAGAGACTCGTATA 57.736 37.037 14.10 0.00 46.26 1.47
235 236 8.149973 GAGACTCTTTTGATAGAGACTCGTAT 57.850 38.462 14.10 0.00 46.26 3.06
236 237 7.542534 GAGACTCTTTTGATAGAGACTCGTA 57.457 40.000 14.10 0.00 46.26 3.43
237 238 6.431198 GAGACTCTTTTGATAGAGACTCGT 57.569 41.667 14.10 0.00 46.26 4.18
240 241 6.406849 GGCATGAGACTCTTTTGATAGAGACT 60.407 42.308 3.68 6.51 45.52 3.24
241 242 5.752955 GGCATGAGACTCTTTTGATAGAGAC 59.247 44.000 3.68 1.83 43.54 3.36
242 243 5.163364 GGGCATGAGACTCTTTTGATAGAGA 60.163 44.000 3.68 0.00 43.54 3.10
243 244 5.055812 GGGCATGAGACTCTTTTGATAGAG 58.944 45.833 3.68 0.00 45.75 2.43
244 245 4.141620 GGGGCATGAGACTCTTTTGATAGA 60.142 45.833 3.68 0.00 0.00 1.98
245 246 4.133078 GGGGCATGAGACTCTTTTGATAG 58.867 47.826 3.68 0.00 0.00 2.08
246 247 3.432186 CGGGGCATGAGACTCTTTTGATA 60.432 47.826 3.68 0.00 0.00 2.15
247 248 2.681976 CGGGGCATGAGACTCTTTTGAT 60.682 50.000 3.68 0.00 0.00 2.57
248 249 1.339055 CGGGGCATGAGACTCTTTTGA 60.339 52.381 3.68 0.00 0.00 2.69
249 250 1.089920 CGGGGCATGAGACTCTTTTG 58.910 55.000 3.68 0.62 0.00 2.44
250 251 0.678048 GCGGGGCATGAGACTCTTTT 60.678 55.000 3.68 0.00 0.00 2.27
255 256 0.839946 ATAAAGCGGGGCATGAGACT 59.160 50.000 0.00 0.00 0.00 3.24
314 316 5.120986 CCTTGTGTGCGTGTATTGTATTGTA 59.879 40.000 0.00 0.00 0.00 2.41
315 317 4.083537 CCTTGTGTGCGTGTATTGTATTGT 60.084 41.667 0.00 0.00 0.00 2.71
316 318 4.402583 CCTTGTGTGCGTGTATTGTATTG 58.597 43.478 0.00 0.00 0.00 1.90
317 319 3.119990 GCCTTGTGTGCGTGTATTGTATT 60.120 43.478 0.00 0.00 0.00 1.89
318 320 2.418628 GCCTTGTGTGCGTGTATTGTAT 59.581 45.455 0.00 0.00 0.00 2.29
319 321 1.801771 GCCTTGTGTGCGTGTATTGTA 59.198 47.619 0.00 0.00 0.00 2.41
320 322 0.591170 GCCTTGTGTGCGTGTATTGT 59.409 50.000 0.00 0.00 0.00 2.71
321 323 0.874390 AGCCTTGTGTGCGTGTATTG 59.126 50.000 0.00 0.00 0.00 1.90
322 324 2.028476 TCTAGCCTTGTGTGCGTGTATT 60.028 45.455 0.00 0.00 0.00 1.89
323 325 1.548719 TCTAGCCTTGTGTGCGTGTAT 59.451 47.619 0.00 0.00 0.00 2.29
324 326 0.963225 TCTAGCCTTGTGTGCGTGTA 59.037 50.000 0.00 0.00 0.00 2.90
325 327 0.321671 ATCTAGCCTTGTGTGCGTGT 59.678 50.000 0.00 0.00 0.00 4.49
326 328 1.927174 GTATCTAGCCTTGTGTGCGTG 59.073 52.381 0.00 0.00 0.00 5.34
334 336 3.914426 ACACCCTTGTATCTAGCCTTG 57.086 47.619 0.00 0.00 32.60 3.61
348 350 5.937111 AGTGTACTTGTTCATTAACACCCT 58.063 37.500 0.00 0.00 45.18 4.34
365 367 5.410355 TTGGAGTGTTATGGGTAGTGTAC 57.590 43.478 0.00 0.00 0.00 2.90
398 401 1.000145 GACTTTAAGCGGCTTCCTCG 59.000 55.000 20.06 8.86 0.00 4.63
407 410 0.173708 AGCTCCGGAGACTTTAAGCG 59.826 55.000 35.69 5.57 34.99 4.68
412 415 1.273886 GTTGAGAGCTCCGGAGACTTT 59.726 52.381 35.69 24.10 0.00 2.66
437 451 0.241481 ACTCGACTCCGTCTCTTTGC 59.759 55.000 0.00 0.00 37.05 3.68
439 453 3.056588 AGTACTCGACTCCGTCTCTTT 57.943 47.619 0.00 0.00 29.95 2.52
454 482 1.003718 GGCGCCACTTTGGAGTACT 60.004 57.895 24.80 0.00 40.96 2.73
458 486 3.423154 GACGGCGCCACTTTGGAG 61.423 66.667 28.98 9.93 40.96 3.86
464 492 2.357517 CTTCTTGACGGCGCCACT 60.358 61.111 28.98 10.89 0.00 4.00
466 494 4.697756 CCCTTCTTGACGGCGCCA 62.698 66.667 28.98 3.37 0.00 5.69
473 501 0.531974 TGTGTCGTGCCCTTCTTGAC 60.532 55.000 0.00 0.00 0.00 3.18
475 503 1.230635 CCTGTGTCGTGCCCTTCTTG 61.231 60.000 0.00 0.00 0.00 3.02
481 509 3.041940 CGTTCCTGTGTCGTGCCC 61.042 66.667 0.00 0.00 0.00 5.36
499 527 3.309436 TTGGATCAGACGGTGGCGG 62.309 63.158 0.00 0.00 0.00 6.13
508 536 4.324563 GGAAATCTTGGTCCTTGGATCAGA 60.325 45.833 2.65 4.12 0.00 3.27
509 537 3.950395 GGAAATCTTGGTCCTTGGATCAG 59.050 47.826 2.65 0.00 0.00 2.90
521 549 4.813750 ATTGCTTTGAGGGAAATCTTGG 57.186 40.909 0.00 0.00 0.00 3.61
526 554 6.097412 GTCCTTCATATTGCTTTGAGGGAAAT 59.903 38.462 5.48 0.00 46.05 2.17
535 563 5.491982 ACTCTTCGTCCTTCATATTGCTTT 58.508 37.500 0.00 0.00 0.00 3.51
542 570 6.036517 GTCGTAGTTACTCTTCGTCCTTCATA 59.963 42.308 0.00 0.00 37.98 2.15
626 654 1.228552 TTGCACTCCAAAGGCCTCC 60.229 57.895 5.23 0.00 0.00 4.30
719 749 6.146837 CAGAGGTTGACTGTGAAGTAAGATTG 59.853 42.308 0.00 0.00 42.83 2.67
730 760 1.491670 CACGACAGAGGTTGACTGTG 58.508 55.000 0.00 0.00 46.57 3.66
759 789 1.472728 CGCGCTTACCTGGTTCCTTAT 60.473 52.381 3.84 0.00 0.00 1.73
775 805 1.189403 GTATACACAGAGACACGCGC 58.811 55.000 5.73 0.00 0.00 6.86
803 833 7.661437 GTGCACATCACCAGGATATCTATAAAA 59.339 37.037 13.17 0.00 39.79 1.52
827 857 1.526887 ACGTGAAAGCGACAATCAGTG 59.473 47.619 0.00 0.00 35.59 3.66
838 868 2.307049 CGACCATTCAAACGTGAAAGC 58.693 47.619 0.00 0.00 46.66 3.51
857 887 3.724508 AGATCTTATCAGTCTGCACCG 57.275 47.619 0.00 0.00 0.00 4.94
888 918 3.065786 TGTTGCTTTCTTCTGCAGAGTTG 59.934 43.478 17.43 11.33 40.46 3.16
942 972 4.804665 GTCGAAGCTACTCTTTATGGGTTC 59.195 45.833 0.00 0.00 34.56 3.62
985 1015 0.462581 GCCATGGCGTGAGATCTGAA 60.463 55.000 23.48 0.00 0.00 3.02
987 1017 3.728474 GCCATGGCGTGAGATCTG 58.272 61.111 23.48 0.00 0.00 2.90
999 1029 0.979665 AGGATATGAGGACCGCCATG 59.020 55.000 11.26 0.00 36.29 3.66
1006 1036 1.270358 GGCAACGGAGGATATGAGGAC 60.270 57.143 0.00 0.00 0.00 3.85
1017 1047 3.267974 GCTTTGGAGGCAACGGAG 58.732 61.111 0.00 0.00 46.39 4.63
1089 1119 2.106938 GGGCGATGAGACGATGCA 59.893 61.111 0.00 0.00 35.09 3.96
1096 1126 3.978491 GATCCGCGGGCGATGAGA 61.978 66.667 27.83 2.60 42.83 3.27
1125 1155 2.550699 TATGGTTGGCGCCCCAGAAG 62.551 60.000 26.77 0.00 43.37 2.85
1197 1227 5.467705 ACTGAACGATCTTGTACAGTAACC 58.532 41.667 0.00 0.00 36.94 2.85
1234 1264 1.888512 GCTGCAGGGATTCTGAAAACA 59.111 47.619 17.12 0.00 46.18 2.83
1235 1265 2.094854 CAGCTGCAGGGATTCTGAAAAC 60.095 50.000 17.12 0.00 46.18 2.43
1267 1297 6.207614 GGAGATTTACTCTTGGCAAACTTTCT 59.792 38.462 0.00 0.00 44.37 2.52
1272 1302 4.336280 AGGGAGATTTACTCTTGGCAAAC 58.664 43.478 0.00 0.00 44.37 2.93
1340 1370 4.628074 AGAAGGAAATCGACGAAACAAGA 58.372 39.130 0.00 0.00 0.00 3.02
1342 1372 4.210537 GTGAGAAGGAAATCGACGAAACAA 59.789 41.667 0.00 0.00 0.00 2.83
1393 1429 0.889186 GCACCAACGACCAAGGTCAT 60.889 55.000 18.57 0.41 44.77 3.06
1407 1443 2.186160 CGCAACAAGGACTGCACCA 61.186 57.895 0.00 0.00 38.52 4.17
1413 1449 4.755266 AATAGGTATCGCAACAAGGACT 57.245 40.909 0.00 0.00 0.00 3.85
1471 1507 4.662468 ACAGAAGTCGTGCATATCTGAT 57.338 40.909 18.04 0.00 39.85 2.90
1480 1516 3.367025 GGTAACATGTACAGAAGTCGTGC 59.633 47.826 0.00 0.00 0.00 5.34
1501 1537 0.179137 TGCACGCTAAGATCGACAGG 60.179 55.000 0.00 0.00 0.00 4.00
1536 1572 7.638683 GCGATTTATAATTACAACCACAGACAC 59.361 37.037 0.00 0.00 0.00 3.67
1554 1590 7.936847 TCCACCTTATCTACAAATGCGATTTAT 59.063 33.333 0.00 0.00 0.00 1.40
1659 1695 0.170339 CTTCATTTTCGGGGAACGCC 59.830 55.000 0.00 0.00 43.86 5.68
1695 1731 0.179134 CGACGGTCTTGATCCTGGAC 60.179 60.000 0.00 0.00 0.00 4.02
1734 1770 4.143333 GCCTCGGCTAACTCGGCA 62.143 66.667 0.00 0.00 40.41 5.69
1741 1777 0.399376 TGGATTAGGGCCTCGGCTAA 60.399 55.000 10.74 0.00 41.60 3.09
1742 1778 0.178903 ATGGATTAGGGCCTCGGCTA 60.179 55.000 10.74 0.00 41.60 3.93
1752 1788 7.040409 GCAATCAACCTAACCTTATGGATTAGG 60.040 40.741 21.58 21.58 44.07 2.69
1982 2018 3.436577 TGTCCCTATTACCCGCAAAAA 57.563 42.857 0.00 0.00 0.00 1.94
1983 2019 3.349022 CTTGTCCCTATTACCCGCAAAA 58.651 45.455 0.00 0.00 0.00 2.44
1984 2020 2.942306 GCTTGTCCCTATTACCCGCAAA 60.942 50.000 0.00 0.00 0.00 3.68
1985 2021 1.407712 GCTTGTCCCTATTACCCGCAA 60.408 52.381 0.00 0.00 0.00 4.85
1986 2022 0.179468 GCTTGTCCCTATTACCCGCA 59.821 55.000 0.00 0.00 0.00 5.69
1987 2023 0.179468 TGCTTGTCCCTATTACCCGC 59.821 55.000 0.00 0.00 0.00 6.13
1988 2024 2.158813 ACATGCTTGTCCCTATTACCCG 60.159 50.000 0.00 0.00 0.00 5.28
1989 2025 3.577805 ACATGCTTGTCCCTATTACCC 57.422 47.619 0.00 0.00 0.00 3.69
1990 2026 5.008712 GCTTAACATGCTTGTCCCTATTACC 59.991 44.000 5.61 0.00 34.06 2.85
1991 2027 5.588648 TGCTTAACATGCTTGTCCCTATTAC 59.411 40.000 5.61 0.00 34.06 1.89
1992 2028 5.750524 TGCTTAACATGCTTGTCCCTATTA 58.249 37.500 5.61 0.00 34.06 0.98
1993 2029 4.599041 TGCTTAACATGCTTGTCCCTATT 58.401 39.130 5.61 0.00 34.06 1.73
1994 2030 4.202441 CTGCTTAACATGCTTGTCCCTAT 58.798 43.478 5.61 0.00 34.06 2.57
1995 2031 3.609853 CTGCTTAACATGCTTGTCCCTA 58.390 45.455 5.61 0.00 34.06 3.53
1996 2032 2.440409 CTGCTTAACATGCTTGTCCCT 58.560 47.619 5.61 0.00 34.06 4.20
1997 2033 1.135286 GCTGCTTAACATGCTTGTCCC 60.135 52.381 5.61 0.00 34.06 4.46
1998 2034 1.466360 CGCTGCTTAACATGCTTGTCC 60.466 52.381 5.61 0.00 34.06 4.02
1999 2035 1.197721 ACGCTGCTTAACATGCTTGTC 59.802 47.619 5.61 0.00 34.06 3.18
2000 2036 1.238439 ACGCTGCTTAACATGCTTGT 58.762 45.000 0.00 0.00 37.82 3.16
2001 2037 1.980844 CAACGCTGCTTAACATGCTTG 59.019 47.619 0.00 0.00 0.00 4.01
2002 2038 1.666888 GCAACGCTGCTTAACATGCTT 60.667 47.619 2.93 0.00 45.74 3.91
2003 2039 0.109597 GCAACGCTGCTTAACATGCT 60.110 50.000 2.93 0.00 45.74 3.79
2004 2040 2.352814 GCAACGCTGCTTAACATGC 58.647 52.632 2.93 0.00 45.74 4.06
2053 2089 1.952263 GCAAATGCTATCCGGAGCC 59.048 57.895 11.34 0.53 42.11 4.70
2093 2129 7.526608 TCTTCGTGGTCTTTTAATATTTGCAG 58.473 34.615 0.00 0.00 0.00 4.41
2139 2176 7.168637 GCATTTGCAGATAACATTTAGACATGG 59.831 37.037 0.00 0.00 41.59 3.66
2145 2182 5.904941 TGGGCATTTGCAGATAACATTTAG 58.095 37.500 4.74 0.00 44.36 1.85
2146 2183 5.163426 CCTGGGCATTTGCAGATAACATTTA 60.163 40.000 4.74 0.00 44.36 1.40
2151 2188 1.410153 CCCTGGGCATTTGCAGATAAC 59.590 52.381 0.00 0.00 44.36 1.89
2166 2203 1.643310 TGATTGGGCTTTTTCCCTGG 58.357 50.000 0.12 0.00 46.67 4.45
2172 2209 8.404765 CACAAGTTAAAAATGATTGGGCTTTTT 58.595 29.630 0.00 0.00 36.40 1.94
2187 2224 5.752955 GCCTGATTTTCTGCACAAGTTAAAA 59.247 36.000 0.00 0.00 0.00 1.52
2232 2269 7.736447 AAAACAAGATTCAGTGGTCTAGAAG 57.264 36.000 0.00 0.00 0.00 2.85
2263 2300 4.040445 ACTGGACAATTTTGTTTGGTCG 57.960 40.909 0.00 0.00 42.43 4.79
2267 2304 4.547966 CGCGAAACTGGACAATTTTGTTTG 60.548 41.667 0.00 0.00 42.43 2.93
2297 2334 0.523072 GTCCAATGCGTGCTTGACAT 59.477 50.000 0.00 0.00 0.00 3.06
2399 2436 4.773510 GCTATTAGCATGACGTTTTAGCC 58.226 43.478 10.83 0.00 41.89 3.93
2519 2679 4.868171 CACGGAATCCATCTCTTTCGTTAA 59.132 41.667 0.00 0.00 0.00 2.01
2569 2729 3.837731 CTCCTCTTTCTCCACTCTCCTTT 59.162 47.826 0.00 0.00 0.00 3.11
2594 2754 7.612677 TCTTTACTCTTGGGTTCTTCATCTAC 58.387 38.462 0.00 0.00 0.00 2.59
2621 2781 7.327975 AGACATGTTTCTTATATGTTGTCCGA 58.672 34.615 0.00 0.00 38.53 4.55
2650 2810 6.035220 TGACGACTAGTTATATTTGTTTGCCG 59.965 38.462 0.00 0.00 0.00 5.69
2741 2902 5.901276 AGGGCCAAATGATAATGATGAACTT 59.099 36.000 6.18 0.00 0.00 2.66
2854 3017 3.731216 CCAACATGCTCTAACGTATCTCG 59.269 47.826 0.00 0.00 46.00 4.04
2855 3018 4.683832 ACCAACATGCTCTAACGTATCTC 58.316 43.478 0.00 0.00 0.00 2.75
2856 3019 4.737855 ACCAACATGCTCTAACGTATCT 57.262 40.909 0.00 0.00 0.00 1.98
2857 3020 5.350365 TCAAACCAACATGCTCTAACGTATC 59.650 40.000 0.00 0.00 0.00 2.24
2858 3021 5.242434 TCAAACCAACATGCTCTAACGTAT 58.758 37.500 0.00 0.00 0.00 3.06
2859 3022 4.633175 TCAAACCAACATGCTCTAACGTA 58.367 39.130 0.00 0.00 0.00 3.57
2860 3023 3.472652 TCAAACCAACATGCTCTAACGT 58.527 40.909 0.00 0.00 0.00 3.99
2861 3024 4.406069 CATCAAACCAACATGCTCTAACG 58.594 43.478 0.00 0.00 0.00 3.18
2862 3025 4.168760 GCATCAAACCAACATGCTCTAAC 58.831 43.478 0.00 0.00 39.92 2.34
2863 3026 3.193267 GGCATCAAACCAACATGCTCTAA 59.807 43.478 0.00 0.00 42.24 2.10
2864 3027 2.754552 GGCATCAAACCAACATGCTCTA 59.245 45.455 0.00 0.00 42.24 2.43
2865 3028 1.547372 GGCATCAAACCAACATGCTCT 59.453 47.619 0.00 0.00 42.24 4.09
2866 3029 1.273048 TGGCATCAAACCAACATGCTC 59.727 47.619 0.00 0.00 42.24 4.26
2867 3030 1.340088 TGGCATCAAACCAACATGCT 58.660 45.000 0.00 0.00 42.24 3.79
2868 3031 2.166821 TTGGCATCAAACCAACATGC 57.833 45.000 0.00 0.00 42.23 4.06
2869 3032 5.692613 ATTTTTGGCATCAAACCAACATG 57.307 34.783 0.00 0.00 46.66 3.21
2870 3033 5.009811 CCAATTTTTGGCATCAAACCAACAT 59.990 36.000 0.00 0.00 46.66 2.71
2871 3034 4.337555 CCAATTTTTGGCATCAAACCAACA 59.662 37.500 0.00 0.00 46.66 3.33
2872 3035 4.857799 CCAATTTTTGGCATCAAACCAAC 58.142 39.130 0.00 0.00 46.66 3.77
2884 3047 8.041829 TCAAATATTGACATGCCAATTTTTGG 57.958 30.769 30.70 20.55 45.16 3.28
2917 3080 6.586082 GTCAACCAATTACTAGCCAACATTTG 59.414 38.462 0.00 0.00 0.00 2.32
2918 3081 6.493458 AGTCAACCAATTACTAGCCAACATTT 59.507 34.615 0.00 0.00 0.00 2.32
2919 3082 6.010219 AGTCAACCAATTACTAGCCAACATT 58.990 36.000 0.00 0.00 0.00 2.71
2920 3083 5.570320 AGTCAACCAATTACTAGCCAACAT 58.430 37.500 0.00 0.00 0.00 2.71
2921 3084 4.980573 AGTCAACCAATTACTAGCCAACA 58.019 39.130 0.00 0.00 0.00 3.33
2922 3085 6.418585 GTAGTCAACCAATTACTAGCCAAC 57.581 41.667 0.00 0.00 0.00 3.77
2937 3100 4.620982 AGCAAGCAAAATTGGTAGTCAAC 58.379 39.130 0.00 0.00 39.03 3.18
2938 3101 4.935352 AGCAAGCAAAATTGGTAGTCAA 57.065 36.364 0.00 0.00 39.03 3.18
2939 3102 5.767665 TCTTAGCAAGCAAAATTGGTAGTCA 59.232 36.000 0.00 0.00 42.31 3.41
2940 3103 6.254281 TCTTAGCAAGCAAAATTGGTAGTC 57.746 37.500 0.00 0.00 42.31 2.59
2941 3104 5.335976 GCTCTTAGCAAGCAAAATTGGTAGT 60.336 40.000 0.00 0.00 42.31 2.73
2942 3105 5.098211 GCTCTTAGCAAGCAAAATTGGTAG 58.902 41.667 0.00 0.00 42.31 3.18
2943 3106 5.059404 GCTCTTAGCAAGCAAAATTGGTA 57.941 39.130 0.00 0.00 41.89 3.25
2944 3107 3.917988 GCTCTTAGCAAGCAAAATTGGT 58.082 40.909 0.00 0.00 41.89 3.67
2957 3120 1.216122 CGGCTGAAGATGCTCTTAGC 58.784 55.000 0.00 12.94 36.73 3.09
2988 3151 1.377690 TTTTATGCCTCCTGTGGGGA 58.622 50.000 0.00 0.00 42.77 4.81
3043 3206 4.344865 GCCCAACCGCCCTCAGAA 62.345 66.667 0.00 0.00 0.00 3.02
3107 3292 2.485038 GGGTCAATTTTCGCCGAAAGTA 59.515 45.455 12.50 0.00 32.93 2.24
3156 3342 1.949525 GAATTCATGCCGTACCATGCT 59.050 47.619 0.00 0.00 41.77 3.79
3159 3345 3.558931 TGAGAATTCATGCCGTACCAT 57.441 42.857 8.44 0.00 0.00 3.55
3164 3350 5.895636 TTTATGTTGAGAATTCATGCCGT 57.104 34.783 8.44 0.00 32.27 5.68
3339 3530 3.646534 TCTGGTGGAGCATCTATGAAGA 58.353 45.455 0.00 0.00 35.80 2.87
3362 3553 4.580167 GGGTGCATCAACAATTATAGCAGA 59.420 41.667 0.00 0.00 0.00 4.26
3368 3559 2.426738 CCACGGGTGCATCAACAATTAT 59.573 45.455 0.00 0.00 0.00 1.28
3371 3562 1.250154 CCCACGGGTGCATCAACAAT 61.250 55.000 0.00 0.00 0.00 2.71
3403 3594 2.036475 CTGCCTACCTCAATATGCGTCT 59.964 50.000 0.00 0.00 0.00 4.18
3461 3656 2.505819 CCATACTACAAGCAGGGTCCTT 59.494 50.000 0.00 0.00 0.00 3.36
3472 3667 4.603989 TTGACACCGAACCATACTACAA 57.396 40.909 0.00 0.00 0.00 2.41
3486 3681 1.166531 AAGAGCCAGCGTTTGACACC 61.167 55.000 0.00 0.00 0.00 4.16
3554 3749 4.025396 CGAAAGATCAAATGTGGGAGATCG 60.025 45.833 0.00 0.00 41.24 3.69
3582 3777 2.225293 TGTCTGGTACCCTGCTAAGACT 60.225 50.000 21.79 0.00 36.01 3.24
3587 3782 1.899814 CTGTTGTCTGGTACCCTGCTA 59.100 52.381 10.07 0.00 0.00 3.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.