>input_sequence_46517
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---------------------------------------------------------------------ATGGCGGTCCT
CATATCCTCCGTTGCCTCCAAAGCCTTGGCGCTCTACACTCCGGGGATTTCTCGGCATCGAAGGAGCACAGTTTCATTTG
CATCGTCTCATCGCCCGCGGATCCTTGCCATGAACTTCTGGGGCGCCAACCATAACCTGCCGATCAGGAGAGCAACACAG
TAAGTGCCTTCTTGTTCTTAGGATGCGGTTACTGTACAAGATCGTTCAGTATATTTCACGTGTTGTTTTCAGAATCCCTG
CAGCTGTTCCAGGCCCAGAAAGTTTGCCAAGAGTAAATCTCCCTATGTCCAACATGCCTTCATGGTGAGTGCAGAGGGGT
TACGGTTGCTCTTG----TTTCGTCGATTTCCTTCTCACGTTCACAGGCTATGTG--GTTCTCTCAGGATGACCTTGGTC
GTTGGTGCAGTCCTTGTTGCGATACCTATTTACAGAAAGATAAGAGCATTGGAAGGTAAAATCTGAATCAGATATGCACG
ACTTCTGTACATGTTACCTGTCGATCTTAGCGTGCATTTTCATCTCAACTTGTGTCTGTGGTTGTAATTATAAATCGCAT
TTGTAGATAAGGTGGAGAAGACGGCAGAGGTGGCGGTCGAGGTAATGGACACGGTGGCCGAAGCTGCCGAGAAAGTCGCC
GGCGAGGTGGCCGAGGCGTTCCCCGAAAATGAAGGCCTCAAGGAGGCAGCGTCCAGGATCAAGACCGTCGCCGATGCGAT
CGAGGAGGATGCCGAGTTAGCCGAGGCCCTAATCCATAAGGTTAGGTTGATTGCCTAGTTTATTACTTGCACGTTTTGGC
TTCCTGTGAATCCAAAGCTGAAAGTTCCTCAACGTTTACACTACGGCAGCTGCTGATGTTCAGTAGTGTTGCTTAACTAG
GTCATGGCGCAGCCGTGCAAGTTACCGGCCGTTCCATGCTATATCCGCAAGTTAGAGATGCGTGTTGACTTCTAGAGTTA
TAGGGACAAGCATGTTTTTTTTGCGGGTAATAGGGACAAGCATGTTAAGCAGCGTTGCTACACTACTTGTGTAGCGGATA
TCCAATTCGGCTCCGGATAGCATTTGCTCCTGCGTGTTAAAAATGTTTCTGCAAATATTAAAAGACCACGAAGAAAAATT
A-GACATGTACATGTCCATGTCTAAATGTTATCTGCAAATGCCCAGGGAAAAAGCCCAATCATTTTTAACTTGTGCAGAA
AATCAGGCTGAGTGCCCCATTTTTGGCACTTCTAGACCACTGAATCTTGTTTTTTTGGCCGACCAAACAAAATTGTCCAG
TTTCGCGTGAAAAATGTCAAGCACGCATTGGACACTACAAGAAGATGTAGAAACATCAGACTTCTTTAAATTTGTTTGAC
ATTCATTCTGAATTTACTGTTCATTTGCTCCGGAGGGCTAAAACGTCATGCTAATAGCATTAGATGGAAGCTAGTAA---
--------------------------------------------------------------------------------
---------------------------------------ATGTGATGATATTTGTTTTTATGTA-GAGGGTATAAATGAA
ACTCTCTCTATCTTTCCTGGTTAACGCAGGTTGATGAGTTAACGAAAGAGATGGATTCCGTGGTCGGTCCTATCATCGAC
GTGGTCATAAAGGAGAGTGGAGAAAGAGGAGTCGTAGATGAAGAACCCAAGAGTAAAGAATCGGACAACATATAA-----
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>chr2A_1_TraesCS2A01G318800
GTCCTCCTCTGTCCCACATAGAGGGCATAGGCCGTCTCCAGGGCCATTTCGCTTGAGCACCTTCACGCCAGAGGGAGTAC
GGCCTCGGATCCATTGCCACAGGAATATCTGAATCTTCAGGGGGAGTCTAATCTCCCAAACCTGCGCAAAGGGCGCCGGG
GTAGGCGTTGGCGCAATGGCCGGGTAGAGCGACTTGATGGAGAACCGTCTGAAGGGATCCAAGCGCCAAGAGATTATACG
AGTCTCTATCAAAAGAGTCTCATGCCCCGCTTTATATAT-AAAGCAACGATCATACAAATACATCCATACAACACTACAA
TACAATACACGCACACAAGGCTAGATACAAGGGTGTTAATGAACAAGTACACTA-CCCATAACACTCCAAGCAAACTACA
CGAGGAAGCCGCTTAAAGTCTCCGGAGCTCTCAACC-----------ACCGCAAAGAGACGGAG--------------TC
GAGTACTCCAAAGTGGCGCCGTCAAGAAGGGCACGACACAGGAACGCCGCCACCGTCTGATCCAAGGACCAAGATTTCCC
TCAAAGCAATATGAAGGACGAAGAGTAACTACGACGACGCCTTCAAGAAGGAAATGACGTCCATAGGCGCCGCCATCGTG
GCGACCGAGAGGGGGAGGCCTTTGGAGTGCAAGTATTTTCTGGCACAGAGGTGTCAGAAGTAACGTTTCATTTATTCAAT
CTTTTTTTTT--GGAAAAACATTTTTTCCAATCTTACTTCACAGTCAACCTCTGTCGTGCAACCCAATATAAGGAACCAG
GTAAGCGCGTGTCTCTGTGTATACTAAAGCAGTTTTATAGATATCCTGGTGATGTGCACTGATTGTCGCTTTCACGTTTG
AATGGTCGGTGCAGACTGATAAGATCTAAGCTGAGCACAACTCTGCAGAAGAAAGCAACACAAGCAGGTTGCCACAAGTT
ATGTTCCGTAGGAACCCATAAAGAGTAGCTTCGACGTCGAAGAAACCTTCTTCCTTCAGATCTCACGCCATGGCGGTCCT
CATATCCTCCGTTGCCTCCAAAGCCTTGGCGCTCTACACTCCGGGGATTTCTCGGCATCGAAGGAGCACAGTTTCATTTG
CATCGTCTCATCGCCCGCGGATCCTTGCCATGAACTTCTGGGGCGCCAACCATAACCTGCCGATCAGGAGAGCAACACAG
TAAGTGCCTTCTTGTTCTTAGGATGCGGTTACTGTACAAGATCGTTCAGTATATTTCACGTGTTGTTTTCAGAATCCCTG
CAGCTGTTCCAGGCCCAGAAAGTTTGCCAAGAGTAAATCTCCCTATGTCCAACATGCCTTCATGGTGAGTGCAGAGGGGT
TACGGTTGCTCTTG----TTTCGTCGATTTCCTTCTCACGTTCACAGGCTATGTG--GTTCTCTCAGGATGACCTTGGTC
GTTGGTGCAGTCCTTGTTGCGATACCTATTTACAGAAAGATAAGAGCATTGGAAGGTAAAATCTGAATCAGATATGCACG
ACTTCTGTACATGTTACCTGTCGATCTTAGCGTGCATTTTCATCTCAACTTGTGTCTGTGGTTGTAATTATAAATCGCAT
TTGTAGATAAGGTGGAGAAGACGGCAGAGGTGGCGGTCGAGGTAATGGACACGGTGGCCGAAGCTGCCGAGAAAGTCGCC
GGCGAGGTGGCCGAGGCGTTCCCCGAAAATGAAGGCCTCAAGGAGGCAGCGTCCAGGATCAAGACCGTCGCCGATGCGAT
CGAGGAGGATGCCGAGTTAGCCGAGGCCCTAATCCATAAGGTTAGGTTGATTGCCTAGTTTATTACTTGCACGTTTTGGC
TTCCTGTGAATCCAAAGCTGAAAGTTCCTCAACGTTTACACTACGGCAGCTGCTGATGTTCAGTAGTGTTGCTTAACTAG
GTCATGGCGCAGCCGTGCAAGTTACCGGCCGTTCCATGCTATATCCGCAAGTTAGAGATGCGTGTTGACTTCTAGAGTTA
TAGGGACAAGCATGTTTTTTTTGCGGGTAATAGGGACAAGCATGTTAAGCAGCGTTGCTACACTACTTGTGTAGCGGATA
TCCAATTCGGCTCCGGATAGCATTTGCTCCTGCGTGTTAAAAATGTTTCTGCAAATATTAAAAGACCACGAAGAAAAATT
A-GACATGTACATGTCCATGTCTAAATGTTATCTGCAAATGCCCAGGGAAAAAGCCCAATCATTTTTAACTTGTGCAGAA
AATCAGGCTGAGTGCCCCATTTTTGGCACTTCTAGACCACTGAATCTTGTTTTTTTGGCCGACCAAACAAAATTGTCCAG
TTTCGCGTGAAAAATGTCAAGCACGCATTGGACACTACAAGAAGATGTAGAAACATCAGACTTCTTTAAATTTGTTTGAC
ATTCATTCTGAATTTACTGTTCATTTGCTCCGGAGGGCTAAAACGTCATGCTAATAGCATTAGATGGAAGCTAGTAA---
--------------------------------------------------------------------------------
---------------------------------------ATGTGATGATATTTGTTTTTATGTA-GAGGGTATAAATGAA
ACTCTCTCTATCTTTCCTGGTTAACGCAGGTTGATGAGTTAACGAAAGAGATGGATTCCGTGGTCGGTCCTATCATCGAC
GTGGTCATAAAGGAGAGTGGAGAAAGAGGAGTCGTAGATGAAGAACCCAAGAGTAAAGAATCGGACAACATATAAGAAAC
ATGTCTTACCGGCAAACAAATATAACTAGTCGTCAACCGTGCATCCGCAT-GGGTGTATATAACTATATATACAATGTCG
ATAAATAACCAGTAACAGCTCAAGTTCATCATTATCATTTGGCCCTTGTCTCATAGTCATGAGTTTTTGTTTCAGTACAG
AATTCTAGAAAACGTAT--ATATTGAACTGATTGTGTTTACAAAGAGGTAAATACACGAGATACGTTAGAGCATGTTGGT
TTGATGCCAAAAATTGGCATGTCAATATTTGACAAATGCCAAATGTTGGCTAGTAATTGGTTGACTACCAATTTTGCTTG
CTAAGAGCATCTTCAGCCGTTGCCCCCCCCTCCCCACAGGAGGCATAAAAATCGTCGCTTAGGGGCGAGCCGGCGGTATA
ATCGGTTCTGAGGGCGGTTGGGCACCCTGCCGTCGC-----------CCCCAGGC-GCC----------GATGTCGGCCC
AGTTTTCGGCCTACTTTCGGCG-AAAATTGACCCGGTATCGGCGAGAATCGACCCATATTCAGCATGGTACGGCATGAAT
TCTCAACATAAATAA-TTTTTT-ATCACGTAGTTCATCACAGAAAATCAATAGAAATCAAATAGTTCAA--AAAATAGTG
CAACAAAAAATAGTTCAATACAAATTATATAGTTCAACAAATAAAAACTCATATTTCATCACA-CGTCGAGTTAGGCGTC
GCCCTTGATTCTTCATAGATGCTCCACCAGATTCTGCTATAATTGTTGATGCACCCGTGGGTTTCGGATCTCCAGACGCA
TATTGAGGT----AGGCAGTCCAGGTTGCCGGTAGCTGGTGATCAACTTGGGCAAAAGGACCCTGCTTGTAGTATGGTTC
GGTGTCAAACGCTGGCTCTTCCTGCTCGCTCTCAATGATTATATTGTGCAAGATGACACAACAAGTCACGATCTCCCACA
TTTGATCTTTCGACCAAGTCTTAGCAGGGTACCAGACAACAGCAAATCGAGATTGGAGCACACCAAATGA
>chr2D_252
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-----------AAAGGGTCTCGCGCTTCCCTTTATATATAAAAGCAACGATCATACAAATCCATCCATACAACAC-----
--------ACGCACAGAAGGCTAGATACATGGGTGTTAATGAACAACTACACTACCCCATAACACTCCAAGCAAACTACA
TGAGGAAGCTGCTTGAAGTCTCCGGAGCTCTCAACCGTGAATGAATCACCACGACGAGACGGAGCCGTATACGACAAGTC
GGGTAATCCAAGGCGGCGCCTTTAAGAAAGGCACGACATCG----GACGCCACCGCATAATCCAAGGATCAAGGTTTCCT
TCGAAGCAACATGAAGAACGAAGAGTAACTAGGACGACGCCTTCAAGAAGGAAATGACGCCCATAGTCGCCGCCATCATG
GCGACCGAGAGGGAGAGGCCTTTGGAGTGCAAGTATTTTCTGGCACAGAGGTGTCGGAAGTAACGTTTCATTTATTCAAT
CTTTTTTTTTTGGGAAAAACATTTTTTC-AATCTTACTTGACAGTCAACCTCTGTCGTGCAACCCAATTTAAGGAACCAG
GTAACCGCGTGTCTCTATGTATACTAAAGCAG-TTTATAGATATCCTGGTGATGTGTACTGATTGTCACTTTCACGTTTG
AATGGTTGGTGCAGACTGATAAGATCTAAGCTGAGCAGAACTCTGCAGAAGAAAGCAACACAAGCAGGTTGCCACAAGTC
ATGTTCCGTAGAAACCCATAAAGAGTAGCTTCGACGTCGAAGAAACCTTCCTCCCTAAGATCTCACGC-ATGGCGATCCT
CATATCTTCCATTGCTTCCAAAGCCTTGGCCCTCTACACTCCGGGGATTTCTCGGCATCGAAGGAGCACGGTTTCATTCG
CATCGGCTCGTCGTCCGCGGATCCTTGCCATGAAGTTCTGGGGCGCCAACCATAACCTGCCGATCAGGAGAGCAACACAG
TAAGTGCCTTCTTGTTCTTAGGATGCAGTTACTGTACAAGATCGTTCAGTATATTTCACGTGTCATTTTCAGAATCCCCG
CAGCTGTTCCAGGCCCCGAAAATTTGCCAAGAGTAAATCTCCCTATGTCCAACATGCCTTCATGGTGAGTGCAGAAGAGT
TACGGTTGCACGTGTTAATTTCATCCATTTCCTTCTCACATTCACAGGCTATATGTGGTTCTCTCAGGGTGACCTTGGTC
GTCGGTGCCGTCCTTGTTGCAATACCGATTTACAGAAAGATAAGAGCATTGGAAGGT-AAATTTGATTCAGATATCCACG
ACTTCTGTACATGTTATCTGTCGATCTTAGCGTGCATTTTCATCTCAACTTCTGTCTGTGGTTGTAATTGCAAATCGCGT
CTGTAGATAAGGTGGAGAAGACGGCGGAGGTGGCAGTCGAGGTAATCGACACGGTGGCCGAAGCTGCCGAGAAAGTCGCC
GGCGAGGTGGCCGAAGCGTTCCCCGAAAATGAAGGCCTCAAGGAGGCAGCATCCAGGATCAAGACCGTCGCCGATGCGAT
CGAGGAGGACGCCGAGAAAGCCGAGGCACTAATCCATAAGGTTAGGTTGATTACCTAGTTTATTACTTGCACGTTTTGGC
TTCCTGTGAATCCAAAGCTGAAAGTTCCTCAACGTTTACACTACGACAGCTGCTGATGTTCAGTAGTGTTGCTTAACTAG
GTCATGGTGCAGCCGTGCAAGTTACCGGCCGTTCCATGCTATATCCGCAAGTTAGAGATGCGTGTTGACTTCTAGAGTTA
TAGGGACAAGCAT------------------------------GTTAAGCAGCGTTGCTACACTACTTGTGTAGCGGATA
TCCAATTCAGCTCCGGATAGCATTTGCCCCTGCGCGTTAAAAATGTTTTTGCAAATATTAAAAGACCACGAAGAAAAATT
A-GCAGA----------------------------CAAGTGCTCAGGGGAAAAGCCCAATCAC-TTTAACTTGTGCAGAA
AATCAAGTTGAGTGCCCCATTTTTGGCATTTCTAGACCACTGAATCTTTTTTTTTTGGCGGACGAAACAAAATTGTCTAG
TTTCGCATGAAAATTGTCAAGCACGCATTGGACACTACAAGAAGGTGTAGAAAAATCAGATTTCTTTAAATTTGTTTGAC
ATTCATTCTGAATTTACTGTTCATTTGGTCCGGAGAGCTAAAACGTCATCCTGATAGCATTGGATGGCAGCTAGTAGTAA
TTG----------------------------------------------------------------------------G
TAGTACACTGAGCAACATGTGGGGCACTTACTGCTTAGCATGTGATGATATTCGTTTTCATGTTGGAAGGTATAAATGAA
ACTCTCTCTATCTTTCCTGGTTAACGCAGGTTGATGAGATAAAGAAAGAGGTGGATTCCGTGGTCGGTCCTATCATCGAC
GTGGTCATGAAGGAGAGTGGAGAAAGAGGAGTCATAGATGAA---CCCAAGAGGAAAGAAACGGACAACATATAAGAAAC
ATGTCTTACAGGCAAATAAATATAACTAGTCGTCAACCGTGCATTCGCATGGGGTGTATATAACTATATATAAAATGTCG
ATAAATAACCAGTAACAGCTTGAGTTCATCATTATCATTTGGCCCTTGTCTCATGGTCATGAATTTTTGTTTCAGTACAG
AATTCTAGGAAACGTATACATATTGAACTGCTTGTGTTTACAAA------------------------------------
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>chr2B_494
GGAG----------------------------------------------------------------------------
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--------------------------------------------CGACGCCACCGCATGATCCAAGGATCAAGGTTTCCC
TCGAAGCAACATGGAGGACGAAGAGTAACTGCGACGACGCCTTCAAGAAGGAAATGACGCCCGTAGGCGCCGCCATCATG
GCGACCAAGAGGGAGAGGCCTTTGGAGTGCAGGTATTTTCTGGCACAGAGGTGTCAGAAGTAACGTTTCATTTATTCAAT
CTCTCTTTTTTTGGAAAAACATTTTTTC-AATCTTACTTGACAGTCAACCTCTGTCGTGCAACCCAATTTAAGGAACCAG
GCAACCGCGTGTCTCTATGTATACTAAAGCAG-TTTATAGATATCCTGGTAATGTGAACTGATTGTCACTTTCACGTTTG
AATGGTTGGTGCAGACTGATAAGATCTAAGTTGAGCATAACTCTGCAGAAGAAAGCAACACAAGCAGGTTGCCACAAGTT
ATGTGCCGTAGAAACCCATAAAGAGTAGCTTCGACGTCGAAGAAACCTTCTTCCCTAAGATCTCACGC-ATGGCGATCCT
CATATCTTCCATTGCTTCCAAAGCCTTGGCGCTCTACACTCCGGAGATTTCTCGGCATCGAAGGAGCACAGTTTCATTCG
CATCGGCTCATCGCCCGCGAATCCTTGCCATGAAGTTCTGGGGCGCCAACCATAACCTGCCGATCAGGAGAGCAACACAG
TAAGTGCCTTCTTGTTCTTAGGATGCAGTTACTGTACAAGATCGTTCAGTATATTTCACGTGTCATTTTCAGAATCCCCG
CAGCTGTTCCAGGCCCCCAAAATTTACCAAGAGGAAATCTCCCTATGCCCAACATGCCTTCATGGTGAGTGCAGAGGGGG
TACGGTTACACGCG----TTTCGTCGATTTCCTTCTCACATTCACAGGCTATGTATGGTTCTCTCAGGGTGACCCTGGTC
GTCGGTGCCGTCCTTGTTGCAATACCGATTTATAGAAAGATAAGAGCATTGGAAGGT-AAATCTGATTCAGATATCCACG
ACTTCTGTATATGTCATCTGTTGATCTTAGCGTGCATTTTCATCTCAACTTCTGTCTG--GTTGTAATTCTAAATCGCAT
TTGTAGATAAGGTGGAGAAGACAGCAGAGGTGGCGGTCGAGGTAATCGACACGGTGGCCGAAGCTGCCGAGAAAGTCGCC
GGCGAGGTCGCCGAAGCGTTTCCCGAAAATGAAGGCCTCAAGGAGGCAGCATCCAGGATCAAGGCCGTCGCCGATGCGAT
CGAGGAGGACGCCGAGAAAGCCGAGGCACTAATCCATAAGGTTAGGTTGATTGCTTAGTTTATTACTTGCACGTTTTGGC
TTCCTGTGAATCCAAAGCTGAAAGTTCCTCAACGTTTACACTACGGCAGCTGCTGATGTTCAGTGCTGTTGCTTAACTAG
GTCATGGTGCAGCCGTGCAAGTTACCGGCCATTCCATGCTATATCCGCAAGTTAGAGATGCGTGTTGACTTCTGGAGTTA
TAGGGACAAGCAT------------------------------GTTAAGCAGCGTTGCTACACTACTTATGTAGCGGATA
TC--------CTCCGGATAGCATTTGCTCCTGCGCGTTAAAAATATTTTTGCAGATATAAAAAGACTACAAATTTTTTTT
TGGACATGGACATGTTCATGTACAAATATTATCTGCAAATGCTTAGAGGAAAAGTCCAATCATA-TTGACTTGTGCAGCA
AACCAAGTTGAGTGCCCCATGTTTAGCATTTGTAGACCACTGAATCTTGTTTTTTGGCCGACG--AACAAAATTGTGCAG
TTTCGCGTGAAAATTGTCAAACAT-CCTTGAACACTACATGGATATGT-GAAAAATCAGATTTTTATTTATTTATTTGAT
ATACATTCTGAATTTACTGTTCATTTGCTCTGGAGAACCAAAACGTCATGCTAA----ATTAGATGGCAGCTAATTGGTA
CTCCCTCCGTCCCATAATGTAAGACGTTTTTGACACTACATTAGTGATAAAAAATGTCTTACATTATGAGACGGAGGGAG
TAGTACACTGAGCAACATGTGGGGCACTTACTGCTTAGCATGTGATGATATTCGTTGTCATGTAGGAGGGCATAAATGAA
A--CTCTCTATCTTTCCTGGTTAACGCAGGTTGATGAGATAACGGAAGAGGTGGATTCCGTGGTCGGTCCTATCATCGAC
GCGGTCATGAAGGAGAGTGGAGAAAGAGGAGTCATAGATGAAGAACCCAAAAGGAAAGAAACGGACAACATATAAGAAAC
ATGTCTTACAGGCAAATAAATATAACTAGTCGTCGACCGTGCATTCGCACGGGGTGTATATAATTATATATACAATGTCG
AATAATAACCAGTAACAGCTCGAGTTCATCATTATCATTTGGCCTTTGTCTTATAGTCATGAGTTTTTGTTTCAGTACAG
AATTCTAGGAAACGTATACATATTGAACTGCTTGTGTTTACAAA------------------------------------
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>chr3A_2959
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CTCAGAGCATCTCCAGCCGTTGCCCC-----CCCCCCAGGAGGCATAAAAATCGCCGCCTGGGGGCGAGCCGGCGGTATA
ATCGGCTCAGGGGGCGGTTGGGCACCCAACCGTCGT-----------CCCTAGGC-GCC----------GATGTTGGCCC
AGTTTTCGGCCCACTTTCGGCG-AAAAATGGCCCGATATCGGCGAGAATCGCCCCATATTCGGCGTGGTTCGGCGTGAAT
TCTCAACATAAATAA-TTTTTTTATCAC--AGTTCATCACAGAAAATCAATAGAAATCAAATAGTTCAAC--AAATAGTG
CAACAACAAATAGTTCAATACAAATTATATAGTTCAACAAATAAAAACTCATATTTCATCACA-TGTCGAGCTAGGCGTC
ACCCTTGATCCTCCATAGATGCTCCACCAGATCCTGCTGCAGTTGTTGATGCACATGTGGGTCTTGGATCTCCTGACGCA
TATTGAGGT----AGGCAGTCCAGGTTGCCGGTAGCTGGTGATCAACTTCGGCAAGAGGACACTGCCTGTAGTATGGTTC
AGTGTCAAACACTGGCTCTTCCTGCTCGCTCTCAATGATCATATTGTGCAAGATGACACGAGAAGTCATGATCTCCCACA
TTTGATCTTTCGACCAGGTCTGAGCAGGGTACCGAACAACAACAAATCGAGATTGGAGCGCACCAAATG-
>chr5D_2959
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CTAAGAGCATCTCCAGCCGTTGCCC------CCCCCCAGGAGGCATAAAATTCGCCGCCTGGGGGCGAGCCGGCGGTATA
AACGGCTCTGGGGGCGGTTGGGCACCCAGCCGTCGCCCCCAGGTCGCCCCTAGGC-GCC----------GATGTCGACCC
AGTTTTCAGCCCACTGTCGGCG-AAAAATGGCCCAATATCGGCGAGAATCGGCCCATATTCGGCGTGGTTTGGCGTGAAT
TCTCAACATAAATAAATTTTTT-ATCACATAGTTCATCACAGAAAATCAATAGAAATTAAATAGTTCAAC--AATTAGTG
CAACAACAAATAGTTCAATACAAATTATATAGTTCAACAAATAAAATCTCATATTTCATCACA-CGTCGAGCTAGGCGTC
GGCCTTGATCCTCCATAGATGCTCCACCAGATCCTGCTGCAGTTGTTGATGCACCTGTAGGTCTCGGATCTCCTGACACA
TATTGAGGT----AGGCAGTCCAGGTTGCCAGTAGCTGATGATCAACTTCGGCAAGAGGACCCTGCCTGTAGTATGGTTC
TGTGTCAAACACTAGCTCTTCTTACTCGCTCTCAATGATCATATTGTGCAAGATGACATAGCAAGTCATGATCTCCCACA
TTTGATCTTTCGACCAGGTCTGGGCAGGGTACCGGACAACAGCAAATCGAGATTGGAGCACACCAAATG-
>chr2D_2960
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-TAAGAGCATCTCCAGCCGTTGGCA-------CCCCCAAGAGGCATAAAATTCGCCGCCTGGGGGCAAGCCGGTGGTATA
ATCGGCTCTGGGGGCGGTTGGGCACCCAACCTTC-----------GCTCCCAGGC-GCT----------GATGTCGGCCG
ATTTTTCGGCCCACTTTCGGCC-ACAAATGGCCCGATATCAGCGCGAATCGGCCCATATTCGGCGTGGTTCAGCATCAAT
TCTCAACATAAATAA-TTTTTT-ATCACATAGTTCATCACAGAAAATCAATAGAAATCAAATAGTTCAAC-AAAATAGTT
CATCAACAAATAGTTCAATACAAATTATATAGTTCAACAAATAAAAACTCATATTTCATCACA-CGTCGAGCTAGGCGTC
GCCCTTGATCCTCCATAGGTGCTCCATCAGATCCTGCTGCAGTTGTTGATGCACATGTGGGTCTCGGATCTCATGACGCA
TACTGAGGT----AGGCAGTCCAGGTTGCCGGTAGCTGGTGATCAACTTGGGCAAGAGGACCCTACCTGTAGTATGGTTC
AGTGTCAAACACTGGCTCTTCCTGCTCGCTCTTAATGATCATATTGTGCAAGATGACACAACAAGTCATGATTTCCCACA
TTTGATCTTTCGACCGTGTCTGAGCAGGGTACCAGACAACAGCACATCGAGATTGGAGCACACCAAATG-
>chr4D_2962
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---AGAGCATCTCCAGCCGTTGGC-------CCCCCCAGGAGGCATAAAAATCGCCGCCTGGGGGTGAGCCGGTGGTATA
ATCGGCTCTGGGGGCGGTTGGGCACCCAGCCGTC-----------GGCCCCAGGT-GCT----------GATGTCGGCCC
AGTTTTCGGCCCACTTTCGGTG-AAAAATGGCCCGATATCGGCGAGAATCAGCCCATATTCGGCGTGGTTCGGCGTTAAT
TCTCAACATAAATAA-TTTTTT-ATCACATAGTTCATCACAGAAAATCAATAGAAATCAAATAGTTCAAC-AAAATAGCG
CAATAACAAATAGTTCAATACATATTATATAGTTCAACAAATAAAAACTCATATTTCATCACACCGTCGAGCTAGGCGTC
GCCCTTGATCCTCCATAGATGCTCCACCAGATCCTACTGCAGTTGTTGATGCACCCGTGGGTCTTGGATCTCCTGACGCA
TATTGAGGT----AGGCAGTCCAGGTTGCCCGTAGCTGGTGATCAACTTCGGCAAGAGGACCCTACCTGTAGTATGGTTC
AGTGTCAAACACTGGCTCTTCCTGCTCGCTCTCAATGATCATATTGTGCAAGATGACACAACAAGTCATGATCTCCCACA
TTTGATCTTTCGACCAGGTCTGAGCAGGGTACCGGACAATAGCAAATCGAGATTGGAGCACACCAAATG-
>chr1D_2990
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-------------------------------CCCCACAGGAGGCATAAAATTCGCCGCCTCGGGGCGAGCCTGTGGTATA
ATCGGCTCTGGGGGCGGTTGGTCACTCAGCCGTC-----------GCCCCCAGGC-GCC----------GATGTCGGCCC
AGTTTTCGGCCCACTATCGGCG-AAAAATGGCGCGATATCGGCGAGGACCGGCCCATATTCGGCGTGGTTCGGCGTGAAT
TCTCAACATAAATAT-TTTTTT-ATCACATAGTTCATCACAGAAAATCAATAGAAATCAAATAGCTCAAC-AAA-TAGTG
CAACAACAAATAGTTCAATACAAATTATATAGTTCAACAAATAAAAACTCATATTTCATCACA-CGTCGAGCTAGGCGTC
GCCCTTGATCCTCCATAGATGCTCCACCAGATCCTGCTGCAGTTGTTGATGCACCTGTGGGTCTCGGATCTCCTGACGCA
TATTGAGGT----AGGCAGTCCAGGTTGCCGGTAGCTAGTGATCAAGTTTGGCAAGAGGACCCAGCCTGTAGTATGGTTC
AGTGTCAAACACTGGCTCTTCCTGCTCGCTCTCAATGATCATATTGTGGAAGATGACACAGCAAGTCATGATCTCCCATA
TTTGATCTTTCGACCAGGTCTGAGCAGGGTACTGGACAACAGCAAATCGAGATTGGAGCACACCAAATG-
>chr7D_2990
CCCCCCT-------------------------------------------------------------------------
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-------------------------------------AGGAGGCATAAAAATCGCCACCTGGGGGCGAGCCGGTAGTATA
ATTGGCTCT-GGGGCGGTTGGGCACCCAGCCGTC-----------GCCCCCAGGTCGCC----------GATGTCGGCCC
AGTTTTCGCCCCACTTTCGGCG-AAAAGTGGCATGATATC-GCGACAATCGGCCCATATTCGGCGTGGTTCGGCTTGAAT
TCTCAACATAAATAA-TTTTTTTATCACATAGTTCATCACAGCAAATCAATAGAAATCAAATAGTTCAACAAAA-TAGTG
CAACAACAAATAGTTCAGTACAAATTATATAGTTCAACAAATAAAAAC-CATATTTCAT-ACA-CGTCGAGCTAGGCATC
GCCTTTGATCCTCCATAGATGCTCCACCAGATCATGCTGTAGTTGTTGATGCACTTGTGGGTCTCGGATCTCCTGACGCA
TATTGAGGT----AGGCAGTCCAGGTTGCCGGTAGCTAGTGATCAACTTCGGCAAGAGGACCCTGCCTATAGTATGGTTC
AGTGTCAAACACTGGCTCTTCCTGCTCGCTCTCAATGATCATATTATGCAAGATGACACAACAAGTCATGATCTCCGACA
TTTGATCTTTCGACCAGGTCTGAGCAGGGTACCGGACAACAGCAAATCGAAATTGGAGCACACCAAATG-
>chr4D_2995
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------------------------------------CAGGTGGCATAAAAATCGCCGCCTGGAGGCGAGCCGGCGGTATA
ATCGGCTCT-GGGGCGGTTGGGCACCCAGCCGTC-----------GCCCC-AGGC-GTC----------GATGTCGG-CC
AGTTTTCGGCCCACTTTCGGCG-AGAAATGACCCGATATCGGCGAGAATCGGCCCATATTCGACGTGGTTCGGCGTGAAT
TCTCAACATAAATAA-TTTTTTTAGGACGTAGTTCATCACAGAAAATCAATCAAAATCAAATAATTCAACAAAA-TAGTG
CAACAACAAATAGTTCAATACACATTATATAGTTCAACAAATAAAAACTCATATTTCATCACA-CATCGAGCTAGGCGTC
GCCCCTGATCCTCCATAGATGCTCCACCAGATCCTGCTGCAGTTGTTGATGCACCTGTGGGTCTCGGATCTCCTGATGCA
TATTGAGGT----AGGCAGTCCAGGTTGCCGGTAGCTGGTGATCAACTTCGGCAAGAGGACCCTGCATGTAGTATGGTTC
AGTGTCAAACACTGGCTCTTTCTACTCGCTCTCAATGATCATATTGTGCAAGATGACACAACAAGTCATGATCTCGCACA
TTTGATCTTTTGACCAGGTCTGAGCAGGGTACCGGACAACAGCAAATCGAGATTGGAGCACACCAAATG-
>chr2A_3020
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-------------------------------------------------------------GGGGCGAGCCAACAGTATA
ATCGGCTCCGGCGGCGGTTAGGCACCCAACCATC-----------GCCCC-ACGC-GTT----------GATGTCGACCC
AGTTTTTGGGCCACTTTCGGCAAAAAAATGGCTCGATATCAGCGAGAATCAACCCATATTCGACGTGGTTCGGTGCGAAT
TCTCAACATAAATAA--TTTTTTATCACATAGTTCATCACAGAAAATCAATAAAAGTCAAATAGTTTAACAAAA-TAGTG
CAACAACAAATAGTTCAGTACAAATTATATAGTTCAGCAAATAAAAATTCATATTTCATCACA-CGTCGAGCTAGGCGTC
GCCCTTGATCCTTCATATATGCTCCACCAGATCCTGCTGCAGTTGTTGATGCACCTGTGGGTCTCGGATCTCCTGACACA
TATTGAGGTAGCTAGGCAGTCCAGGTTGCCGGTAGCTGGTGACCAACTTCGGCGAGAGGACCCTGCCTGTAGTATGGTTC
AGTGTCAAACACTGCCTCTTCCTACTCGCTCTCAATGATCATATTATGCAAGATGACACAACAAGTCATGATCTCCCACA
TTTGATCTTTCGACCAGTTCTGAGCAGGGTAACGGACAACAACAAATCGAGATTGGAGCACACCAAAT--
>chr1D_3026
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-------------------------------------------------------------------AGCCGGCGGTTTA
ATCGGCTCTGGGGGCGGTTGGGCACCCAGCCGTC-----------GCCCGCAGGTCGCCCCCAGGGGCCGATGTCGGCCC
AGTTTTCGGCCCACTTTTGGCG-AAAAATGGCCCGGTATCGGCGAGAATCGGCCCAT-TTCGGCGTGGTTCGGCGTGAAT
TCTCAACATACACAA-TTTTTTTATCACATAGTTCATCACAGAAAATCAATAGAAATCAAATAGTTCAAC-AAA-TAGTG
CAACAACAAATAGTTCAATACAAATTATATAGTTCAACAAATAAAAACTCATATTTCATCACA-CATCGAGCTAGGCGTC
GCCCTTAATCCTCCATAGATGCTCCACCAGATCCTGCTGCAGTTCTTGATGCACCTATGGGTTTCGGATCTCCTGACGCA
TATTGAGGT----AGGCAGTCCAGGTTGCCGGTAGCTGGTGATCAACTTCGGCAAGAGGACCCTGCCTGTAGTATGGTTC
AGTGTCAAACACTGGCTCTTCCTGCTCGCTCTTAATGATCATATTGTGCAAGATGACACAACAAGTCATGATCTCCCACA
TTTGATCTTTGGACCAGTTTTGAGAAGGGTACCGGACAACAGTAAATCGAGATTGGAGCACACCAAATG-
>SNPs
-S--S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS----S-----SS--SS-S-------------------------------S--------------SSSSS
SSSSSSSS-------S-------------S----------------S---------------------------------
S--------S----S-----------------------------------S-S-S-------------------------
-S---S-----S-S------S-S-----S---------SS-SSS--S--------SS-----------S----S------
--S------S-------------------------------------------------S-----------------S--
-------------S------------------------------------------------------------------
----------------------------S----------S----------------------------S-----------
----S-----------S---------------S-----------------------S----------S------------
------S------------------------------S------------------------------------------
-----------S------------------------------------------S-S-----------S------S----
------S---S----S--------------------------------------------------------------S-
-----S----------------------------S---------------------------------------------
--------------------------S------------------------------------SS-------------S-
----------------S----S----------------------------------------------------------
---------S-S---------------------------S----------------------------S-----------
--S-----S-----------S-----S------------------------------S--------S--------S----
----------------S----------------------------------S-----------------S----------
----------------------------------------------S---------------------------------
--------------S-----------------------------------S-----------------------------
---------S------SS---------S----------------------------------------------------
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-------S------------------------------------------------------------------------
-------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------------
--------S-------------------------S-------------S-------------------------------
--------S------S-----SS----S--------------S-----S--------------S----------------
-----S-S--------------------S------------------------------S---S----------------
-------------S---------------------------------------S------S-------------------
-----------------------------------S-------------------------------S--------S---
--------------------------------------------------------------------------------
----------------------------------------------------S-----S---------------------
--------------------------------------S-----------S-----------------------------
--------S------------------------S-------------------S------S-------------------
---------S------S---------------------------S-----------------------------------
---------------------S----------------------------------------------------------
--------S---------------------S-------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
------------S-------------SSSSS-----------------------S---S-S-------------------
-----S----S----------------S----------------------------------------------------
-----------S---------------S---------------------------------S--S----S----------
--------------------------------------------------------------------------------
------S----------------------------------------------------------------S--------
---------S----------------------S-----S--S-------------------------------S------
-------------------------------------------------------S----------S-------------
S---------S----------------------------S----------------------------S-----------
----------------S----S-----------------------------------------------S
>forward_27
-------TCTGTCCCACATAGAGGGCA-----------------------------------------------------
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>reverse_2039
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--------------------------------------AGCATGTTAAGCAGCGTTGC----------------------
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>forward_1047
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-------------------------------------------------------------------CCATGGCGGTCCT
CATATCC-------------------------------------------------------------------------
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>reverse_2334
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-------------ATGTCAAGCACGCATTGGAC-----------------------------------------------
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>forward_2041
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---------------------TGCGGGTAATAGGGACAAGC---------------------------------------
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>reverse_3681
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GGTGTCAAACGCTGGCTCTT------------------------------------------------------------
----------------------------------------------------------------------
