Multiple sequence alignment - TraesCS2A01G318000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G318000 chr2A 100.000 2861 0 0 1 2861 543188786 543191646 0.000000e+00 5284.0
1 TraesCS2A01G318000 chr7B 99.796 980 2 0 1 980 662734039 662735018 0.000000e+00 1799.0
2 TraesCS2A01G318000 chr7B 90.000 50 1 3 1921 1969 20625262 20625216 8.560000e-06 62.1
3 TraesCS2A01G318000 chr4B 99.694 980 3 0 1 980 151526974 151527953 0.000000e+00 1794.0
4 TraesCS2A01G318000 chr3B 99.388 980 6 0 1 980 201564256 201563277 0.000000e+00 1777.0
5 TraesCS2A01G318000 chr2D 99.184 980 8 0 1 980 272805133 272804154 0.000000e+00 1766.0
6 TraesCS2A01G318000 chr2D 86.920 948 54 21 980 1903 405183044 405183945 0.000000e+00 1000.0
7 TraesCS2A01G318000 chr2D 82.822 163 14 7 2088 2236 405183957 405184119 1.790000e-27 134.0
8 TraesCS2A01G318000 chr2D 87.059 85 9 2 1979 2061 499932701 499932617 8.440000e-16 95.3
9 TraesCS2A01G318000 chr1D 99.183 979 8 0 2 980 254532723 254533701 0.000000e+00 1764.0
10 TraesCS2A01G318000 chrUn 99.084 982 7 1 1 980 351214864 351213883 0.000000e+00 1762.0
11 TraesCS2A01G318000 chrUn 100.000 28 0 0 1928 1955 26816934 26816907 5.000000e-03 52.8
12 TraesCS2A01G318000 chr5D 99.082 980 9 0 1 980 449149488 449150467 0.000000e+00 1760.0
13 TraesCS2A01G318000 chr3A 98.980 980 10 0 1 980 672881905 672880926 0.000000e+00 1755.0
14 TraesCS2A01G318000 chr6B 98.780 984 7 2 1 980 615600480 615599498 0.000000e+00 1746.0
15 TraesCS2A01G318000 chr2B 86.777 968 58 27 992 1931 480070316 480071241 0.000000e+00 1014.0
16 TraesCS2A01G318000 chr2B 88.718 390 29 11 2088 2465 480071241 480071627 2.010000e-126 462.0
17 TraesCS2A01G318000 chr2B 95.789 95 4 0 2506 2600 480071809 480071903 1.370000e-33 154.0
18 TraesCS2A01G318000 chr2B 100.000 29 0 0 1928 1956 617648453 617648425 1.000000e-03 54.7
19 TraesCS2A01G318000 chr7A 81.714 175 21 9 1922 2089 554917433 554917263 4.970000e-28 135.0
20 TraesCS2A01G318000 chr7A 94.286 35 2 0 2050 2084 505172634 505172600 1.000000e-03 54.7
21 TraesCS2A01G318000 chr5A 81.143 175 22 9 1922 2089 435637159 435637329 2.310000e-26 130.0
22 TraesCS2A01G318000 chr4D 81.034 174 24 7 1922 2089 214749981 214750151 2.310000e-26 130.0
23 TraesCS2A01G318000 chr1B 80.220 182 27 9 1917 2093 673867248 673867071 8.320000e-26 128.0
24 TraesCS2A01G318000 chr5B 89.796 49 1 3 1922 1969 578545891 578545846 3.080000e-05 60.2
25 TraesCS2A01G318000 chr6A 100.000 29 0 0 1928 1956 519325622 519325594 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G318000 chr2A 543188786 543191646 2860 False 5284.000000 5284 100.000 1 2861 1 chr2A.!!$F1 2860
1 TraesCS2A01G318000 chr7B 662734039 662735018 979 False 1799.000000 1799 99.796 1 980 1 chr7B.!!$F1 979
2 TraesCS2A01G318000 chr4B 151526974 151527953 979 False 1794.000000 1794 99.694 1 980 1 chr4B.!!$F1 979
3 TraesCS2A01G318000 chr3B 201563277 201564256 979 True 1777.000000 1777 99.388 1 980 1 chr3B.!!$R1 979
4 TraesCS2A01G318000 chr2D 272804154 272805133 979 True 1766.000000 1766 99.184 1 980 1 chr2D.!!$R1 979
5 TraesCS2A01G318000 chr2D 405183044 405184119 1075 False 567.000000 1000 84.871 980 2236 2 chr2D.!!$F1 1256
6 TraesCS2A01G318000 chr1D 254532723 254533701 978 False 1764.000000 1764 99.183 2 980 1 chr1D.!!$F1 978
7 TraesCS2A01G318000 chrUn 351213883 351214864 981 True 1762.000000 1762 99.084 1 980 1 chrUn.!!$R2 979
8 TraesCS2A01G318000 chr5D 449149488 449150467 979 False 1760.000000 1760 99.082 1 980 1 chr5D.!!$F1 979
9 TraesCS2A01G318000 chr3A 672880926 672881905 979 True 1755.000000 1755 98.980 1 980 1 chr3A.!!$R1 979
10 TraesCS2A01G318000 chr6B 615599498 615600480 982 True 1746.000000 1746 98.780 1 980 1 chr6B.!!$R1 979
11 TraesCS2A01G318000 chr2B 480070316 480071903 1587 False 543.333333 1014 90.428 992 2600 3 chr2B.!!$F1 1608

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
501 502 7.259088 AGGTGGGATTATTTAGCTACTATGG 57.741 40.0 0.0 0.0 0.0 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2290 2353 0.104725 AGATCCTCCTAGCCCCCTTG 60.105 60.0 0.0 0.0 0.0 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
501 502 7.259088 AGGTGGGATTATTTAGCTACTATGG 57.741 40.000 0.00 0.00 0.00 2.74
1035 1040 2.049802 TTCGACGGACTGTTCGGC 60.050 61.111 13.81 9.18 0.00 5.54
1062 1067 6.325545 TCTCTCAGGTGGTAAACTACTTCAAA 59.674 38.462 0.00 0.00 0.00 2.69
1067 1088 6.594159 CAGGTGGTAAACTACTTCAAATCGAT 59.406 38.462 0.00 0.00 0.00 3.59
1212 1235 4.189639 AGTGAGTTGTTAATCGTCCTCC 57.810 45.455 0.00 0.00 0.00 4.30
1243 1266 2.703416 CAGTTCATGCTACTTGCTGGA 58.297 47.619 0.00 0.00 43.37 3.86
1244 1267 3.276857 CAGTTCATGCTACTTGCTGGAT 58.723 45.455 0.00 0.00 43.37 3.41
1245 1268 3.311871 CAGTTCATGCTACTTGCTGGATC 59.688 47.826 0.00 0.00 43.37 3.36
1247 1270 1.839354 TCATGCTACTTGCTGGATCCA 59.161 47.619 15.27 15.27 43.37 3.41
1248 1271 1.945394 CATGCTACTTGCTGGATCCAC 59.055 52.381 11.44 8.83 43.37 4.02
1249 1272 1.279496 TGCTACTTGCTGGATCCACT 58.721 50.000 11.44 0.00 43.37 4.00
1250 1273 1.065926 TGCTACTTGCTGGATCCACTG 60.066 52.381 11.44 3.05 43.37 3.66
1251 1274 1.661341 CTACTTGCTGGATCCACTGC 58.339 55.000 11.44 14.84 36.07 4.40
1252 1275 1.209019 CTACTTGCTGGATCCACTGCT 59.791 52.381 22.52 8.89 36.43 4.24
1253 1276 1.279496 ACTTGCTGGATCCACTGCTA 58.721 50.000 22.52 15.98 36.43 3.49
1254 1277 1.842562 ACTTGCTGGATCCACTGCTAT 59.157 47.619 22.52 8.78 36.43 2.97
1255 1278 2.158842 ACTTGCTGGATCCACTGCTATC 60.159 50.000 22.52 3.86 36.43 2.08
1256 1279 1.798626 TGCTGGATCCACTGCTATCT 58.201 50.000 22.52 0.00 36.43 1.98
1257 1280 1.415289 TGCTGGATCCACTGCTATCTG 59.585 52.381 22.52 7.38 36.43 2.90
1258 1281 1.415659 GCTGGATCCACTGCTATCTGT 59.584 52.381 11.44 0.00 33.20 3.41
1259 1282 2.547642 GCTGGATCCACTGCTATCTGTC 60.548 54.545 11.44 0.00 33.20 3.51
1260 1283 2.697229 CTGGATCCACTGCTATCTGTCA 59.303 50.000 11.44 0.00 0.00 3.58
1261 1284 3.106827 TGGATCCACTGCTATCTGTCAA 58.893 45.455 11.44 0.00 0.00 3.18
1262 1285 3.713248 TGGATCCACTGCTATCTGTCAAT 59.287 43.478 11.44 0.00 0.00 2.57
1263 1286 4.063689 GGATCCACTGCTATCTGTCAATG 58.936 47.826 6.95 0.00 0.00 2.82
1264 1287 2.910199 TCCACTGCTATCTGTCAATGC 58.090 47.619 0.00 0.00 0.00 3.56
1265 1288 1.596260 CCACTGCTATCTGTCAATGCG 59.404 52.381 0.00 0.00 0.00 4.73
1266 1289 2.274437 CACTGCTATCTGTCAATGCGT 58.726 47.619 0.00 0.00 0.00 5.24
1267 1290 3.447742 CACTGCTATCTGTCAATGCGTA 58.552 45.455 0.00 0.00 0.00 4.42
1268 1291 3.488678 CACTGCTATCTGTCAATGCGTAG 59.511 47.826 0.00 0.00 0.00 3.51
1269 1292 3.131223 ACTGCTATCTGTCAATGCGTAGT 59.869 43.478 0.00 0.00 0.00 2.73
1277 1300 0.953471 TCAATGCGTAGTTGCGGCTT 60.953 50.000 0.00 0.00 37.81 4.35
1294 1317 3.001330 CGGCTTAATCGACCTGAACATTC 59.999 47.826 0.00 0.00 0.00 2.67
1335 1358 2.677875 GGGGCTGGCCTTGAACAG 60.678 66.667 20.47 0.00 37.76 3.16
1430 1453 0.453282 CGCCAACAAGATCAACTGCG 60.453 55.000 0.00 0.00 31.85 5.18
1461 1495 4.771577 TCATTTCATTGGTAACTGCCATGT 59.228 37.500 0.00 0.00 38.48 3.21
1462 1496 5.245751 TCATTTCATTGGTAACTGCCATGTT 59.754 36.000 0.00 0.00 38.48 2.71
1463 1497 6.435591 TCATTTCATTGGTAACTGCCATGTTA 59.564 34.615 0.00 0.00 38.48 2.41
1494 1528 2.854963 AGCAATTGTCAGCAGAAGTGA 58.145 42.857 7.40 0.00 0.00 3.41
1508 1547 5.179045 CAGAAGTGAACAACTGCAAATCT 57.821 39.130 0.00 0.00 39.81 2.40
1509 1548 4.974275 CAGAAGTGAACAACTGCAAATCTG 59.026 41.667 0.00 0.00 39.81 2.90
1534 1573 6.238731 GCAATATATGGCTGAAGTTGCAGTTA 60.239 38.462 4.71 0.00 39.96 2.24
1535 1574 7.522725 GCAATATATGGCTGAAGTTGCAGTTAT 60.523 37.037 4.71 0.00 39.96 1.89
1547 1586 1.139520 CAGTTATTTGCGGGCAGGC 59.860 57.895 0.00 0.00 0.00 4.85
1604 1643 1.226603 GGACTCGTTCGTGGATCCG 60.227 63.158 7.39 0.00 0.00 4.18
1660 1699 4.796231 ACTCGGTAAGCGCGCCTG 62.796 66.667 30.33 18.09 0.00 4.85
1671 1715 4.971125 GCGCCTGGCCCGTAGATC 62.971 72.222 14.12 0.00 34.80 2.75
1706 1750 2.046700 GTTCATGGCCGAACGGGA 60.047 61.111 15.01 0.90 36.26 5.14
1730 1775 2.224314 GGAACGTTCAGAAAGAGCAAGG 59.776 50.000 28.24 0.00 0.00 3.61
1731 1776 1.884235 ACGTTCAGAAAGAGCAAGGG 58.116 50.000 2.78 0.00 0.00 3.95
1772 1817 8.233868 AGTTTTGCTGGTTTACATTTTGTTTTC 58.766 29.630 0.00 0.00 0.00 2.29
1876 1923 5.295292 AGAGATTAATCAATTGTGCTGACCG 59.705 40.000 17.56 0.00 0.00 4.79
1906 1953 6.038603 TCTGTTTCATGAGTTTATGGCATAGC 59.961 38.462 7.35 5.31 0.00 2.97
1909 1956 5.294734 TCATGAGTTTATGGCATAGCAGA 57.705 39.130 7.35 0.00 0.00 4.26
1910 1957 5.059161 TCATGAGTTTATGGCATAGCAGAC 58.941 41.667 7.35 5.92 0.00 3.51
1919 1966 7.689446 TTATGGCATAGCAGACTAGTAGTAG 57.311 40.000 7.35 2.87 0.00 2.57
1931 1978 8.981647 GCAGACTAGTAGTAGTAACATCTACTC 58.018 40.741 10.28 0.00 44.78 2.59
1932 1979 9.480053 CAGACTAGTAGTAGTAACATCTACTCC 57.520 40.741 10.28 0.03 44.78 3.85
1933 1980 8.650490 AGACTAGTAGTAGTAACATCTACTCCC 58.350 40.741 10.28 3.51 44.78 4.30
1934 1981 8.565780 ACTAGTAGTAGTAACATCTACTCCCT 57.434 38.462 8.55 9.29 44.78 4.20
1935 1982 8.650490 ACTAGTAGTAGTAACATCTACTCCCTC 58.350 40.741 8.55 1.83 44.78 4.30
1936 1983 7.695074 AGTAGTAGTAACATCTACTCCCTCT 57.305 40.000 9.22 3.59 44.78 3.69
1937 1984 7.511268 AGTAGTAGTAACATCTACTCCCTCTG 58.489 42.308 9.22 0.00 44.78 3.35
1938 1985 6.330178 AGTAGTAACATCTACTCCCTCTGT 57.670 41.667 1.21 0.00 44.78 3.41
1939 1986 6.733509 AGTAGTAACATCTACTCCCTCTGTT 58.266 40.000 1.21 0.00 44.78 3.16
1940 1987 6.829811 AGTAGTAACATCTACTCCCTCTGTTC 59.170 42.308 1.21 0.00 44.78 3.18
1941 1988 4.957327 AGTAACATCTACTCCCTCTGTTCC 59.043 45.833 0.00 0.00 32.66 3.62
1942 1989 3.767309 ACATCTACTCCCTCTGTTCCT 57.233 47.619 0.00 0.00 0.00 3.36
1943 1990 4.883021 ACATCTACTCCCTCTGTTCCTA 57.117 45.455 0.00 0.00 0.00 2.94
1944 1991 5.208294 ACATCTACTCCCTCTGTTCCTAA 57.792 43.478 0.00 0.00 0.00 2.69
1945 1992 5.590818 ACATCTACTCCCTCTGTTCCTAAA 58.409 41.667 0.00 0.00 0.00 1.85
1946 1993 6.206042 ACATCTACTCCCTCTGTTCCTAAAT 58.794 40.000 0.00 0.00 0.00 1.40
1947 1994 7.363031 ACATCTACTCCCTCTGTTCCTAAATA 58.637 38.462 0.00 0.00 0.00 1.40
1948 1995 8.013667 ACATCTACTCCCTCTGTTCCTAAATAT 58.986 37.037 0.00 0.00 0.00 1.28
1949 1996 8.875168 CATCTACTCCCTCTGTTCCTAAATATT 58.125 37.037 0.00 0.00 0.00 1.28
1951 1998 9.364653 TCTACTCCCTCTGTTCCTAAATATTAC 57.635 37.037 0.00 0.00 0.00 1.89
1952 1999 9.369672 CTACTCCCTCTGTTCCTAAATATTACT 57.630 37.037 0.00 0.00 0.00 2.24
1954 2001 9.369672 ACTCCCTCTGTTCCTAAATATTACTAG 57.630 37.037 0.00 0.00 0.00 2.57
1955 2002 8.191534 TCCCTCTGTTCCTAAATATTACTAGC 57.808 38.462 0.00 0.00 0.00 3.42
1956 2003 7.234988 TCCCTCTGTTCCTAAATATTACTAGCC 59.765 40.741 0.00 0.00 0.00 3.93
1957 2004 7.235812 CCCTCTGTTCCTAAATATTACTAGCCT 59.764 40.741 0.00 0.00 0.00 4.58
1958 2005 8.652290 CCTCTGTTCCTAAATATTACTAGCCTT 58.348 37.037 0.00 0.00 0.00 4.35
2029 2076 9.515020 TTTTAGATGTAAATTCATCCATTTCGC 57.485 29.630 0.00 0.00 43.46 4.70
2030 2077 6.949352 AGATGTAAATTCATCCATTTCGCT 57.051 33.333 4.04 0.00 43.46 4.93
2031 2078 6.963796 AGATGTAAATTCATCCATTTCGCTC 58.036 36.000 4.04 0.00 43.46 5.03
2032 2079 5.499139 TGTAAATTCATCCATTTCGCTCC 57.501 39.130 0.00 0.00 0.00 4.70
2033 2080 4.946772 TGTAAATTCATCCATTTCGCTCCA 59.053 37.500 0.00 0.00 0.00 3.86
2034 2081 5.417266 TGTAAATTCATCCATTTCGCTCCAA 59.583 36.000 0.00 0.00 0.00 3.53
2035 2082 5.603170 AAATTCATCCATTTCGCTCCAAT 57.397 34.783 0.00 0.00 0.00 3.16
2036 2083 4.579454 ATTCATCCATTTCGCTCCAATG 57.421 40.909 0.00 0.00 0.00 2.82
2037 2084 3.003394 TCATCCATTTCGCTCCAATGT 57.997 42.857 0.00 0.00 30.73 2.71
2038 2085 4.149511 TCATCCATTTCGCTCCAATGTA 57.850 40.909 0.00 0.00 30.73 2.29
2039 2086 4.129380 TCATCCATTTCGCTCCAATGTAG 58.871 43.478 0.00 0.00 30.73 2.74
2040 2087 3.627395 TCCATTTCGCTCCAATGTAGT 57.373 42.857 0.00 0.00 30.73 2.73
2041 2088 3.531538 TCCATTTCGCTCCAATGTAGTC 58.468 45.455 0.00 0.00 30.73 2.59
2042 2089 2.614057 CCATTTCGCTCCAATGTAGTCC 59.386 50.000 0.00 0.00 30.73 3.85
2043 2090 3.270027 CATTTCGCTCCAATGTAGTCCA 58.730 45.455 0.00 0.00 0.00 4.02
2044 2091 3.627395 TTTCGCTCCAATGTAGTCCAT 57.373 42.857 0.00 0.00 34.36 3.41
2045 2092 4.746535 TTTCGCTCCAATGTAGTCCATA 57.253 40.909 0.00 0.00 31.97 2.74
2046 2093 4.955811 TTCGCTCCAATGTAGTCCATAT 57.044 40.909 0.00 0.00 31.97 1.78
2047 2094 4.955811 TCGCTCCAATGTAGTCCATATT 57.044 40.909 0.00 0.00 31.97 1.28
2048 2095 6.413783 TTCGCTCCAATGTAGTCCATATTA 57.586 37.500 0.00 0.00 31.97 0.98
2049 2096 6.025749 TCGCTCCAATGTAGTCCATATTAG 57.974 41.667 0.00 0.00 31.97 1.73
2050 2097 5.773176 TCGCTCCAATGTAGTCCATATTAGA 59.227 40.000 0.00 0.00 31.97 2.10
2051 2098 6.266786 TCGCTCCAATGTAGTCCATATTAGAA 59.733 38.462 0.00 0.00 31.97 2.10
2052 2099 7.039011 TCGCTCCAATGTAGTCCATATTAGAAT 60.039 37.037 0.00 0.00 31.97 2.40
2053 2100 7.276658 CGCTCCAATGTAGTCCATATTAGAATC 59.723 40.741 0.00 0.00 31.97 2.52
2054 2101 7.276658 GCTCCAATGTAGTCCATATTAGAATCG 59.723 40.741 0.00 0.00 31.97 3.34
2055 2102 7.097192 TCCAATGTAGTCCATATTAGAATCGC 58.903 38.462 0.00 0.00 31.97 4.58
2056 2103 7.039011 TCCAATGTAGTCCATATTAGAATCGCT 60.039 37.037 0.00 0.00 31.97 4.93
2057 2104 8.251026 CCAATGTAGTCCATATTAGAATCGCTA 58.749 37.037 0.00 0.00 31.97 4.26
2058 2105 9.639601 CAATGTAGTCCATATTAGAATCGCTAA 57.360 33.333 0.00 0.00 36.79 3.09
2064 2111 9.262358 AGTCCATATTAGAATCGCTAAAAAGAC 57.738 33.333 0.00 0.00 42.10 3.01
2065 2112 8.496751 GTCCATATTAGAATCGCTAAAAAGACC 58.503 37.037 0.00 0.00 42.10 3.85
2066 2113 8.429641 TCCATATTAGAATCGCTAAAAAGACCT 58.570 33.333 0.00 0.00 42.10 3.85
2067 2114 9.706691 CCATATTAGAATCGCTAAAAAGACCTA 57.293 33.333 0.00 0.00 42.10 3.08
2146 2200 1.904287 TAACACAAGGCTGCGGAAAT 58.096 45.000 0.00 0.00 0.00 2.17
2162 2219 5.354792 TGCGGAAATGTATTAGGTTGTTACC 59.645 40.000 0.00 0.00 45.39 2.85
2198 2260 3.438781 TGAATAAGAAGCGGTCGCATTTT 59.561 39.130 17.71 9.53 44.88 1.82
2209 2271 4.671766 GCGGTCGCATTTTGAGATTTAACT 60.672 41.667 10.67 0.00 41.49 2.24
2229 2291 9.932207 TTTAACTAAATAGTGGAGATCGTGAAA 57.068 29.630 0.00 0.00 36.50 2.69
2230 2292 9.582431 TTAACTAAATAGTGGAGATCGTGAAAG 57.418 33.333 0.00 0.00 36.50 2.62
2232 2294 2.961526 TAGTGGAGATCGTGAAAGCC 57.038 50.000 0.00 0.00 0.00 4.35
2233 2295 0.976641 AGTGGAGATCGTGAAAGCCA 59.023 50.000 0.00 0.00 0.00 4.75
2250 2313 1.570803 CCATTTCATTTGGCAGGGGA 58.429 50.000 0.00 0.00 0.00 4.81
2267 2330 3.262915 AGGGGACAGTTCTGAAGATCAAG 59.737 47.826 6.83 0.00 0.00 3.02
2272 2335 5.512232 GGACAGTTCTGAAGATCAAGAAGGT 60.512 44.000 6.83 7.41 0.00 3.50
2274 2337 5.163258 ACAGTTCTGAAGATCAAGAAGGTGT 60.163 40.000 6.83 9.09 0.00 4.16
2275 2338 5.762218 CAGTTCTGAAGATCAAGAAGGTGTT 59.238 40.000 5.93 0.00 0.00 3.32
2276 2339 5.762218 AGTTCTGAAGATCAAGAAGGTGTTG 59.238 40.000 5.93 0.00 0.00 3.33
2279 2342 3.394274 TGAAGATCAAGAAGGTGTTGGGA 59.606 43.478 0.00 0.00 0.00 4.37
2280 2343 4.043310 TGAAGATCAAGAAGGTGTTGGGAT 59.957 41.667 0.00 0.00 0.00 3.85
2281 2344 5.250543 TGAAGATCAAGAAGGTGTTGGGATA 59.749 40.000 0.00 0.00 0.00 2.59
2282 2345 5.365021 AGATCAAGAAGGTGTTGGGATAG 57.635 43.478 0.00 0.00 0.00 2.08
2283 2346 4.164988 AGATCAAGAAGGTGTTGGGATAGG 59.835 45.833 0.00 0.00 0.00 2.57
2284 2347 2.026262 TCAAGAAGGTGTTGGGATAGGC 60.026 50.000 0.00 0.00 0.00 3.93
2286 2349 0.252197 GAAGGTGTTGGGATAGGCGT 59.748 55.000 0.00 0.00 0.00 5.68
2287 2350 1.483415 GAAGGTGTTGGGATAGGCGTA 59.517 52.381 0.00 0.00 0.00 4.42
2288 2351 1.802553 AGGTGTTGGGATAGGCGTAT 58.197 50.000 0.00 0.00 0.00 3.06
2290 2353 1.226746 GTGTTGGGATAGGCGTATGC 58.773 55.000 9.21 9.21 41.71 3.14
2294 2357 0.396435 TGGGATAGGCGTATGCAAGG 59.604 55.000 17.93 0.00 45.35 3.61
2295 2358 0.321653 GGGATAGGCGTATGCAAGGG 60.322 60.000 17.93 0.00 45.35 3.95
2329 2395 6.989169 GGATCTGCTTGAGCTCTATTCTTTTA 59.011 38.462 16.19 0.00 42.66 1.52
2380 2447 1.611977 ACTTCCGGTTTTTGCTTAGGC 59.388 47.619 0.00 0.00 39.26 3.93
2383 2450 1.351683 TCCGGTTTTTGCTTAGGCCTA 59.648 47.619 8.91 8.91 37.74 3.93
2389 2456 2.698855 TTTGCTTAGGCCTAGCAGAG 57.301 50.000 25.76 17.24 39.85 3.35
2406 2473 2.031333 CAGAGCTGTGTTTCAAGCTTCC 60.031 50.000 1.91 0.00 37.79 3.46
2419 2486 2.914379 GCTTCCTGCGTGTAGTTGT 58.086 52.632 0.00 0.00 0.00 3.32
2432 2499 2.434336 TGTAGTTGTTGTCTGTCTGCCT 59.566 45.455 0.00 0.00 0.00 4.75
2452 2519 3.117738 CCTCATATGTTCCCAGGCTTTCT 60.118 47.826 1.90 0.00 0.00 2.52
2466 2554 4.635324 CAGGCTTTCTTTTTCTTTTTGCCA 59.365 37.500 0.00 0.00 40.18 4.92
2471 2559 6.692681 GCTTTCTTTTTCTTTTTGCCATTTCC 59.307 34.615 0.00 0.00 0.00 3.13
2521 2730 1.410517 TCGATGAGGAGGCTCATTGTC 59.589 52.381 17.69 10.34 43.38 3.18
2540 2749 3.181482 TGTCTCAAAAGAAATTTGGCGCA 60.181 39.130 10.83 0.00 46.85 6.09
2585 2794 7.591006 ATTGTGTAACTCAAAACGTCGATAT 57.409 32.000 0.00 0.00 38.04 1.63
2600 2809 9.719279 AAACGTCGATATTTGTTTAACTCAAAA 57.281 25.926 0.00 0.00 38.11 2.44
2601 2810 8.703823 ACGTCGATATTTGTTTAACTCAAAAC 57.296 30.769 0.00 0.00 38.11 2.43
2602 2811 7.799914 ACGTCGATATTTGTTTAACTCAAAACC 59.200 33.333 0.00 2.67 38.35 3.27
2603 2812 7.005857 CGTCGATATTTGTTTAACTCAAAACCG 59.994 37.037 8.44 10.77 38.35 4.44
2604 2813 7.269724 GTCGATATTTGTTTAACTCAAAACCGG 59.730 37.037 0.00 0.00 38.35 5.28
2605 2814 7.172875 TCGATATTTGTTTAACTCAAAACCGGA 59.827 33.333 9.46 0.00 38.35 5.14
2606 2815 7.966204 CGATATTTGTTTAACTCAAAACCGGAT 59.034 33.333 9.46 0.00 38.35 4.18
2611 2820 9.896263 TTTGTTTAACTCAAAACCGGATAATAC 57.104 29.630 9.46 0.00 38.35 1.89
2612 2821 8.618702 TGTTTAACTCAAAACCGGATAATACA 57.381 30.769 9.46 0.00 38.35 2.29
2613 2822 9.064706 TGTTTAACTCAAAACCGGATAATACAA 57.935 29.630 9.46 0.00 38.35 2.41
2616 2825 6.131544 ACTCAAAACCGGATAATACAATGC 57.868 37.500 9.46 0.00 0.00 3.56
2617 2826 5.885912 ACTCAAAACCGGATAATACAATGCT 59.114 36.000 9.46 0.00 0.00 3.79
2618 2827 6.038271 ACTCAAAACCGGATAATACAATGCTC 59.962 38.462 9.46 0.00 0.00 4.26
2619 2828 6.119536 TCAAAACCGGATAATACAATGCTCT 58.880 36.000 9.46 0.00 0.00 4.09
2620 2829 7.276658 TCAAAACCGGATAATACAATGCTCTA 58.723 34.615 9.46 0.00 0.00 2.43
2621 2830 7.441157 TCAAAACCGGATAATACAATGCTCTAG 59.559 37.037 9.46 0.00 0.00 2.43
2622 2831 6.420913 AACCGGATAATACAATGCTCTAGT 57.579 37.500 9.46 0.00 0.00 2.57
2623 2832 6.026947 ACCGGATAATACAATGCTCTAGTC 57.973 41.667 9.46 0.00 0.00 2.59
2624 2833 5.775701 ACCGGATAATACAATGCTCTAGTCT 59.224 40.000 9.46 0.00 0.00 3.24
2625 2834 6.267928 ACCGGATAATACAATGCTCTAGTCTT 59.732 38.462 9.46 0.00 0.00 3.01
2626 2835 6.587990 CCGGATAATACAATGCTCTAGTCTTG 59.412 42.308 0.00 0.00 0.00 3.02
2627 2836 7.371159 CGGATAATACAATGCTCTAGTCTTGA 58.629 38.462 0.00 0.00 0.00 3.02
2628 2837 7.540400 CGGATAATACAATGCTCTAGTCTTGAG 59.460 40.741 6.92 6.92 34.87 3.02
2629 2838 8.580720 GGATAATACAATGCTCTAGTCTTGAGA 58.419 37.037 14.57 1.66 33.68 3.27
2631 2840 9.926158 ATAATACAATGCTCTAGTCTTGAGATG 57.074 33.333 14.57 11.38 33.68 2.90
2632 2841 5.674052 ACAATGCTCTAGTCTTGAGATGT 57.326 39.130 14.57 11.90 33.68 3.06
2633 2842 5.417811 ACAATGCTCTAGTCTTGAGATGTG 58.582 41.667 14.57 10.07 33.68 3.21
2634 2843 3.516981 TGCTCTAGTCTTGAGATGTGC 57.483 47.619 14.57 1.22 33.68 4.57
2635 2844 2.159324 TGCTCTAGTCTTGAGATGTGCG 60.159 50.000 14.57 0.00 33.68 5.34
2636 2845 2.159310 GCTCTAGTCTTGAGATGTGCGT 60.159 50.000 14.57 0.00 33.68 5.24
2637 2846 3.433709 CTCTAGTCTTGAGATGTGCGTG 58.566 50.000 5.46 0.00 33.68 5.34
2638 2847 2.820197 TCTAGTCTTGAGATGTGCGTGT 59.180 45.455 0.00 0.00 0.00 4.49
2639 2848 1.788258 AGTCTTGAGATGTGCGTGTG 58.212 50.000 0.00 0.00 0.00 3.82
2640 2849 1.069204 AGTCTTGAGATGTGCGTGTGT 59.931 47.619 0.00 0.00 0.00 3.72
2641 2850 2.296190 AGTCTTGAGATGTGCGTGTGTA 59.704 45.455 0.00 0.00 0.00 2.90
2642 2851 3.056536 AGTCTTGAGATGTGCGTGTGTAT 60.057 43.478 0.00 0.00 0.00 2.29
2643 2852 4.157840 AGTCTTGAGATGTGCGTGTGTATA 59.842 41.667 0.00 0.00 0.00 1.47
2644 2853 4.500837 GTCTTGAGATGTGCGTGTGTATAG 59.499 45.833 0.00 0.00 0.00 1.31
2645 2854 4.157840 TCTTGAGATGTGCGTGTGTATAGT 59.842 41.667 0.00 0.00 0.00 2.12
2646 2855 3.769536 TGAGATGTGCGTGTGTATAGTG 58.230 45.455 0.00 0.00 0.00 2.74
2647 2856 3.116300 GAGATGTGCGTGTGTATAGTGG 58.884 50.000 0.00 0.00 0.00 4.00
2648 2857 1.593006 GATGTGCGTGTGTATAGTGGC 59.407 52.381 0.00 0.00 0.00 5.01
2649 2858 0.734597 TGTGCGTGTGTATAGTGGCG 60.735 55.000 0.00 0.00 0.00 5.69
2650 2859 0.734942 GTGCGTGTGTATAGTGGCGT 60.735 55.000 0.00 0.00 0.00 5.68
2651 2860 0.734597 TGCGTGTGTATAGTGGCGTG 60.735 55.000 0.00 0.00 0.00 5.34
2652 2861 1.995991 CGTGTGTATAGTGGCGTGC 59.004 57.895 0.00 0.00 0.00 5.34
2653 2862 0.734597 CGTGTGTATAGTGGCGTGCA 60.735 55.000 0.00 0.00 0.00 4.57
2654 2863 1.651987 GTGTGTATAGTGGCGTGCAT 58.348 50.000 0.00 0.00 0.00 3.96
2655 2864 1.327460 GTGTGTATAGTGGCGTGCATG 59.673 52.381 0.09 0.09 0.00 4.06
2656 2865 1.066502 TGTGTATAGTGGCGTGCATGT 60.067 47.619 7.93 0.00 0.00 3.21
2657 2866 1.327460 GTGTATAGTGGCGTGCATGTG 59.673 52.381 7.93 0.00 0.00 3.21
2658 2867 1.066502 TGTATAGTGGCGTGCATGTGT 60.067 47.619 7.93 0.00 0.00 3.72
2659 2868 1.327460 GTATAGTGGCGTGCATGTGTG 59.673 52.381 7.93 0.00 0.00 3.82
2668 2877 2.332514 GCATGTGTGCGTGTGCTT 59.667 55.556 0.00 0.00 42.28 3.91
2669 2878 2.012414 GCATGTGTGCGTGTGCTTG 61.012 57.895 0.00 0.00 42.28 4.01
2670 2879 1.370778 CATGTGTGCGTGTGCTTGG 60.371 57.895 0.00 0.00 43.34 3.61
2671 2880 1.823470 ATGTGTGCGTGTGCTTGGT 60.823 52.632 0.00 0.00 43.34 3.67
2672 2881 2.024588 GTGTGCGTGTGCTTGGTG 59.975 61.111 0.00 0.00 43.34 4.17
2673 2882 2.124942 TGTGCGTGTGCTTGGTGA 60.125 55.556 0.00 0.00 43.34 4.02
2674 2883 1.525765 TGTGCGTGTGCTTGGTGAT 60.526 52.632 0.00 0.00 43.34 3.06
2675 2884 1.100463 TGTGCGTGTGCTTGGTGATT 61.100 50.000 0.00 0.00 43.34 2.57
2676 2885 0.385974 GTGCGTGTGCTTGGTGATTC 60.386 55.000 0.00 0.00 43.34 2.52
2677 2886 0.534877 TGCGTGTGCTTGGTGATTCT 60.535 50.000 0.00 0.00 43.34 2.40
2678 2887 1.270571 TGCGTGTGCTTGGTGATTCTA 60.271 47.619 0.00 0.00 43.34 2.10
2679 2888 1.804151 GCGTGTGCTTGGTGATTCTAA 59.196 47.619 0.00 0.00 38.39 2.10
2680 2889 2.225491 GCGTGTGCTTGGTGATTCTAAA 59.775 45.455 0.00 0.00 38.39 1.85
2681 2890 3.304391 GCGTGTGCTTGGTGATTCTAAAA 60.304 43.478 0.00 0.00 38.39 1.52
2682 2891 4.791411 GCGTGTGCTTGGTGATTCTAAAAA 60.791 41.667 0.00 0.00 38.39 1.94
2683 2892 4.911610 CGTGTGCTTGGTGATTCTAAAAAG 59.088 41.667 0.00 0.00 0.00 2.27
2684 2893 5.505654 CGTGTGCTTGGTGATTCTAAAAAGT 60.506 40.000 0.00 0.00 0.00 2.66
2685 2894 6.273071 GTGTGCTTGGTGATTCTAAAAAGTT 58.727 36.000 0.00 0.00 0.00 2.66
2686 2895 7.422399 GTGTGCTTGGTGATTCTAAAAAGTTA 58.578 34.615 0.00 0.00 0.00 2.24
2687 2896 8.082242 GTGTGCTTGGTGATTCTAAAAAGTTAT 58.918 33.333 0.00 0.00 0.00 1.89
2688 2897 8.081633 TGTGCTTGGTGATTCTAAAAAGTTATG 58.918 33.333 0.00 0.00 0.00 1.90
2689 2898 8.296713 GTGCTTGGTGATTCTAAAAAGTTATGA 58.703 33.333 0.00 0.00 0.00 2.15
2690 2899 8.855110 TGCTTGGTGATTCTAAAAAGTTATGAA 58.145 29.630 0.00 0.00 0.00 2.57
2691 2900 9.129209 GCTTGGTGATTCTAAAAAGTTATGAAC 57.871 33.333 0.00 0.00 0.00 3.18
2721 2930 8.964476 TGAATTACCTCCTTAGATTGAATCAC 57.036 34.615 8.03 0.00 0.00 3.06
2722 2931 8.772250 TGAATTACCTCCTTAGATTGAATCACT 58.228 33.333 8.03 0.00 0.00 3.41
2739 2948 7.884257 TGAATCACTATTCAAACAATCAAGCA 58.116 30.769 0.00 0.00 46.64 3.91
2740 2949 8.024865 TGAATCACTATTCAAACAATCAAGCAG 58.975 33.333 0.00 0.00 46.64 4.24
2741 2950 6.882610 TCACTATTCAAACAATCAAGCAGT 57.117 33.333 0.00 0.00 0.00 4.40
2742 2951 7.275888 TCACTATTCAAACAATCAAGCAGTT 57.724 32.000 0.00 0.00 0.00 3.16
2743 2952 7.715657 TCACTATTCAAACAATCAAGCAGTTT 58.284 30.769 0.00 0.00 36.00 2.66
2744 2953 8.196771 TCACTATTCAAACAATCAAGCAGTTTT 58.803 29.630 0.00 0.00 33.54 2.43
2745 2954 8.819974 CACTATTCAAACAATCAAGCAGTTTTT 58.180 29.630 0.00 0.00 33.54 1.94
2782 2991 7.486802 AACATTTTCTTGAGCATTCTTTTGG 57.513 32.000 0.00 0.00 0.00 3.28
2783 2992 5.993441 ACATTTTCTTGAGCATTCTTTTGGG 59.007 36.000 0.00 0.00 0.00 4.12
2784 2993 4.605640 TTTCTTGAGCATTCTTTTGGGG 57.394 40.909 0.00 0.00 0.00 4.96
2785 2994 1.895131 TCTTGAGCATTCTTTTGGGGC 59.105 47.619 0.00 0.00 0.00 5.80
2786 2995 1.619827 CTTGAGCATTCTTTTGGGGCA 59.380 47.619 0.00 0.00 0.00 5.36
2787 2996 1.941377 TGAGCATTCTTTTGGGGCAT 58.059 45.000 0.00 0.00 0.00 4.40
2788 2997 2.259012 TGAGCATTCTTTTGGGGCATT 58.741 42.857 0.00 0.00 0.00 3.56
2789 2998 3.439154 TGAGCATTCTTTTGGGGCATTA 58.561 40.909 0.00 0.00 0.00 1.90
2790 2999 3.837146 TGAGCATTCTTTTGGGGCATTAA 59.163 39.130 0.00 0.00 0.00 1.40
2791 3000 4.285517 TGAGCATTCTTTTGGGGCATTAAA 59.714 37.500 0.00 0.00 0.00 1.52
2792 3001 5.045724 TGAGCATTCTTTTGGGGCATTAAAT 60.046 36.000 0.00 0.00 0.00 1.40
2793 3002 5.430886 AGCATTCTTTTGGGGCATTAAATC 58.569 37.500 0.00 0.00 0.00 2.17
2794 3003 5.045724 AGCATTCTTTTGGGGCATTAAATCA 60.046 36.000 0.00 0.00 0.00 2.57
2795 3004 5.647225 GCATTCTTTTGGGGCATTAAATCAA 59.353 36.000 0.00 0.00 0.00 2.57
2796 3005 6.319405 GCATTCTTTTGGGGCATTAAATCAAT 59.681 34.615 0.00 0.00 0.00 2.57
2797 3006 7.467675 GCATTCTTTTGGGGCATTAAATCAATC 60.468 37.037 0.00 0.00 0.00 2.67
2798 3007 5.988287 TCTTTTGGGGCATTAAATCAATCC 58.012 37.500 0.00 0.00 0.00 3.01
2799 3008 4.769345 TTTGGGGCATTAAATCAATCCC 57.231 40.909 0.00 0.00 35.13 3.85
2800 3009 2.688477 TGGGGCATTAAATCAATCCCC 58.312 47.619 7.19 7.19 43.35 4.81
2801 3010 1.618343 GGGGCATTAAATCAATCCCCG 59.382 52.381 0.00 0.00 44.89 5.73
2802 3011 1.000843 GGGCATTAAATCAATCCCCGC 59.999 52.381 0.00 0.00 34.77 6.13
2803 3012 1.000843 GGCATTAAATCAATCCCCGCC 59.999 52.381 0.00 0.00 0.00 6.13
2804 3013 1.335872 GCATTAAATCAATCCCCGCCG 60.336 52.381 0.00 0.00 0.00 6.46
2805 3014 0.958822 ATTAAATCAATCCCCGCCGC 59.041 50.000 0.00 0.00 0.00 6.53
2806 3015 1.104577 TTAAATCAATCCCCGCCGCC 61.105 55.000 0.00 0.00 0.00 6.13
2807 3016 2.272230 TAAATCAATCCCCGCCGCCA 62.272 55.000 0.00 0.00 0.00 5.69
2808 3017 2.927201 AAATCAATCCCCGCCGCCAT 62.927 55.000 0.00 0.00 0.00 4.40
2809 3018 2.927201 AATCAATCCCCGCCGCCATT 62.927 55.000 0.00 0.00 0.00 3.16
2810 3019 3.903282 CAATCCCCGCCGCCATTG 61.903 66.667 0.00 0.00 0.00 2.82
2811 3020 4.122149 AATCCCCGCCGCCATTGA 62.122 61.111 0.00 0.00 0.00 2.57
2812 3021 4.875713 ATCCCCGCCGCCATTGAC 62.876 66.667 0.00 0.00 0.00 3.18
2814 3023 4.169696 CCCCGCCGCCATTGACTA 62.170 66.667 0.00 0.00 0.00 2.59
2815 3024 2.895372 CCCGCCGCCATTGACTAC 60.895 66.667 0.00 0.00 0.00 2.73
2816 3025 2.895372 CCGCCGCCATTGACTACC 60.895 66.667 0.00 0.00 0.00 3.18
2817 3026 2.895372 CGCCGCCATTGACTACCC 60.895 66.667 0.00 0.00 0.00 3.69
2818 3027 2.270850 GCCGCCATTGACTACCCA 59.729 61.111 0.00 0.00 0.00 4.51
2819 3028 1.377987 GCCGCCATTGACTACCCAA 60.378 57.895 0.00 0.00 0.00 4.12
2820 3029 0.751643 GCCGCCATTGACTACCCAAT 60.752 55.000 0.00 0.00 37.24 3.16
2821 3030 1.762708 CCGCCATTGACTACCCAATT 58.237 50.000 0.00 0.00 34.77 2.32
2822 3031 2.099405 CCGCCATTGACTACCCAATTT 58.901 47.619 0.00 0.00 34.77 1.82
2823 3032 2.495669 CCGCCATTGACTACCCAATTTT 59.504 45.455 0.00 0.00 34.77 1.82
2824 3033 3.510719 CGCCATTGACTACCCAATTTTG 58.489 45.455 0.00 0.00 34.77 2.44
2825 3034 3.192422 CGCCATTGACTACCCAATTTTGA 59.808 43.478 0.00 0.00 34.77 2.69
2826 3035 4.494484 GCCATTGACTACCCAATTTTGAC 58.506 43.478 0.00 0.00 34.77 3.18
2827 3036 4.620567 GCCATTGACTACCCAATTTTGACC 60.621 45.833 0.00 0.00 34.77 4.02
2828 3037 4.380444 CCATTGACTACCCAATTTTGACCG 60.380 45.833 0.00 0.00 34.77 4.79
2829 3038 3.495434 TGACTACCCAATTTTGACCGT 57.505 42.857 0.00 0.00 0.00 4.83
2830 3039 3.404899 TGACTACCCAATTTTGACCGTC 58.595 45.455 0.00 0.00 0.00 4.79
2831 3040 2.745821 GACTACCCAATTTTGACCGTCC 59.254 50.000 0.00 0.00 0.00 4.79
2832 3041 2.106857 ACTACCCAATTTTGACCGTCCA 59.893 45.455 0.00 0.00 0.00 4.02
2833 3042 2.302587 ACCCAATTTTGACCGTCCAT 57.697 45.000 0.00 0.00 0.00 3.41
2834 3043 2.167662 ACCCAATTTTGACCGTCCATC 58.832 47.619 0.00 0.00 0.00 3.51
2835 3044 2.166829 CCCAATTTTGACCGTCCATCA 58.833 47.619 0.00 0.00 0.00 3.07
2836 3045 2.094752 CCCAATTTTGACCGTCCATCAC 60.095 50.000 0.00 0.00 0.00 3.06
2837 3046 2.094752 CCAATTTTGACCGTCCATCACC 60.095 50.000 0.00 0.00 0.00 4.02
2838 3047 2.556189 CAATTTTGACCGTCCATCACCA 59.444 45.455 0.00 0.00 0.00 4.17
2839 3048 2.577606 TTTTGACCGTCCATCACCAT 57.422 45.000 0.00 0.00 0.00 3.55
2840 3049 2.107950 TTTGACCGTCCATCACCATC 57.892 50.000 0.00 0.00 0.00 3.51
2841 3050 0.980423 TTGACCGTCCATCACCATCA 59.020 50.000 0.00 0.00 0.00 3.07
2842 3051 0.536724 TGACCGTCCATCACCATCAG 59.463 55.000 0.00 0.00 0.00 2.90
2843 3052 0.811616 GACCGTCCATCACCATCAGC 60.812 60.000 0.00 0.00 0.00 4.26
2844 3053 1.221566 CCGTCCATCACCATCAGCA 59.778 57.895 0.00 0.00 0.00 4.41
2845 3054 0.179037 CCGTCCATCACCATCAGCAT 60.179 55.000 0.00 0.00 0.00 3.79
2846 3055 1.224075 CGTCCATCACCATCAGCATC 58.776 55.000 0.00 0.00 0.00 3.91
2847 3056 1.224075 GTCCATCACCATCAGCATCG 58.776 55.000 0.00 0.00 0.00 3.84
2848 3057 1.122227 TCCATCACCATCAGCATCGA 58.878 50.000 0.00 0.00 0.00 3.59
2849 3058 1.069668 TCCATCACCATCAGCATCGAG 59.930 52.381 0.00 0.00 0.00 4.04
2850 3059 0.866427 CATCACCATCAGCATCGAGC 59.134 55.000 0.00 0.00 46.19 5.03
2860 3069 1.275066 GCATCGAGCTTCATCGTGC 59.725 57.895 0.00 7.52 43.20 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
501 502 8.020819 TGCATTTACTGTTATTGCTTCTGTAAC 58.979 33.333 12.84 0.00 34.47 2.50
1035 1040 5.986501 AGTAGTTTACCACCTGAGAGAAG 57.013 43.478 0.00 0.00 0.00 2.85
1062 1067 4.998788 TGATGTCTGAAACGAAGATCGAT 58.001 39.130 6.78 0.00 43.74 3.59
1067 1088 6.165577 TGATGATTGATGTCTGAAACGAAGA 58.834 36.000 0.00 0.00 0.00 2.87
1104 1125 5.066634 CAGTAGTACTCATCAGTTCATCGGT 59.933 44.000 0.00 0.00 33.62 4.69
1212 1235 1.638133 CATGAACTGCAGGAGACGAG 58.362 55.000 19.93 0.00 0.00 4.18
1238 1261 1.415659 ACAGATAGCAGTGGATCCAGC 59.584 52.381 16.81 16.54 0.00 4.85
1239 1262 2.697229 TGACAGATAGCAGTGGATCCAG 59.303 50.000 16.81 5.54 0.00 3.86
1241 1264 3.827008 TTGACAGATAGCAGTGGATCC 57.173 47.619 4.20 4.20 0.00 3.36
1243 1266 3.474600 GCATTGACAGATAGCAGTGGAT 58.525 45.455 0.00 0.00 0.00 3.41
1244 1267 2.739609 CGCATTGACAGATAGCAGTGGA 60.740 50.000 0.00 0.00 0.00 4.02
1245 1268 1.596260 CGCATTGACAGATAGCAGTGG 59.404 52.381 0.00 0.00 0.00 4.00
1247 1270 2.680312 ACGCATTGACAGATAGCAGT 57.320 45.000 0.00 0.00 0.00 4.40
1248 1271 3.711086 ACTACGCATTGACAGATAGCAG 58.289 45.455 0.00 0.00 0.00 4.24
1249 1272 3.801114 ACTACGCATTGACAGATAGCA 57.199 42.857 0.00 0.00 0.00 3.49
1250 1273 3.302740 GCAACTACGCATTGACAGATAGC 60.303 47.826 0.00 0.00 0.00 2.97
1251 1274 3.060940 CGCAACTACGCATTGACAGATAG 60.061 47.826 0.00 0.00 0.00 2.08
1252 1275 2.857748 CGCAACTACGCATTGACAGATA 59.142 45.455 0.00 0.00 0.00 1.98
1253 1276 1.660607 CGCAACTACGCATTGACAGAT 59.339 47.619 0.00 0.00 0.00 2.90
1254 1277 1.067693 CGCAACTACGCATTGACAGA 58.932 50.000 0.00 0.00 0.00 3.41
1255 1278 0.095245 CCGCAACTACGCATTGACAG 59.905 55.000 0.00 0.00 0.00 3.51
1256 1279 1.906994 GCCGCAACTACGCATTGACA 61.907 55.000 0.00 0.00 0.00 3.58
1257 1280 1.226018 GCCGCAACTACGCATTGAC 60.226 57.895 0.00 0.00 0.00 3.18
1258 1281 0.953471 AAGCCGCAACTACGCATTGA 60.953 50.000 0.00 0.00 0.00 2.57
1259 1282 0.724549 TAAGCCGCAACTACGCATTG 59.275 50.000 0.00 0.00 0.00 2.82
1260 1283 1.444836 TTAAGCCGCAACTACGCATT 58.555 45.000 0.00 0.00 0.00 3.56
1261 1284 1.597663 GATTAAGCCGCAACTACGCAT 59.402 47.619 0.00 0.00 0.00 4.73
1262 1285 1.003851 GATTAAGCCGCAACTACGCA 58.996 50.000 0.00 0.00 0.00 5.24
1263 1286 0.043310 CGATTAAGCCGCAACTACGC 60.043 55.000 0.00 0.00 0.00 4.42
1264 1287 1.254570 GTCGATTAAGCCGCAACTACG 59.745 52.381 0.00 0.00 0.00 3.51
1265 1288 1.591619 GGTCGATTAAGCCGCAACTAC 59.408 52.381 0.00 0.00 0.00 2.73
1266 1289 1.479323 AGGTCGATTAAGCCGCAACTA 59.521 47.619 0.00 0.00 0.00 2.24
1267 1290 0.249398 AGGTCGATTAAGCCGCAACT 59.751 50.000 0.00 0.00 0.00 3.16
1268 1291 0.373716 CAGGTCGATTAAGCCGCAAC 59.626 55.000 0.00 0.00 0.00 4.17
1269 1292 0.248012 TCAGGTCGATTAAGCCGCAA 59.752 50.000 0.00 0.00 0.00 4.85
1294 1317 4.756642 TGCCATAGAAGAACACAAGAACAG 59.243 41.667 0.00 0.00 0.00 3.16
1305 1328 0.548031 CAGCCCCTGCCATAGAAGAA 59.452 55.000 0.00 0.00 38.69 2.52
1306 1329 1.348008 CCAGCCCCTGCCATAGAAGA 61.348 60.000 0.00 0.00 38.69 2.87
1307 1330 1.150081 CCAGCCCCTGCCATAGAAG 59.850 63.158 0.00 0.00 38.69 2.85
1335 1358 1.479730 CGTACTTCACCCTAGGAACCC 59.520 57.143 11.48 0.00 0.00 4.11
1441 1464 6.849085 ATAACATGGCAGTTACCAATGAAA 57.151 33.333 10.36 0.00 44.65 2.69
1461 1495 9.341078 TGCTGACAATTGCTAAGATGATAATAA 57.659 29.630 5.05 0.00 0.00 1.40
1462 1496 8.907222 TGCTGACAATTGCTAAGATGATAATA 57.093 30.769 5.05 0.00 0.00 0.98
1463 1497 7.718314 TCTGCTGACAATTGCTAAGATGATAAT 59.282 33.333 5.05 0.00 0.00 1.28
1504 1543 6.516194 GCAACTTCAGCCATATATTGCAGATT 60.516 38.462 11.08 0.00 40.46 2.40
1505 1544 5.048224 GCAACTTCAGCCATATATTGCAGAT 60.048 40.000 11.08 0.00 40.46 2.90
1506 1545 4.276678 GCAACTTCAGCCATATATTGCAGA 59.723 41.667 11.08 5.76 40.46 4.26
1507 1546 4.037089 TGCAACTTCAGCCATATATTGCAG 59.963 41.667 11.08 3.45 44.26 4.41
1508 1547 3.952967 TGCAACTTCAGCCATATATTGCA 59.047 39.130 11.08 4.73 46.23 4.08
1509 1548 4.037208 ACTGCAACTTCAGCCATATATTGC 59.963 41.667 0.47 0.47 40.99 3.56
1510 1549 5.762825 ACTGCAACTTCAGCCATATATTG 57.237 39.130 0.00 0.00 37.59 1.90
1511 1550 8.469309 AATAACTGCAACTTCAGCCATATATT 57.531 30.769 0.00 0.00 37.59 1.28
1512 1551 8.355169 CAAATAACTGCAACTTCAGCCATATAT 58.645 33.333 0.00 0.00 37.59 0.86
1513 1552 7.681782 GCAAATAACTGCAACTTCAGCCATATA 60.682 37.037 0.00 0.00 42.17 0.86
1514 1553 6.567050 CAAATAACTGCAACTTCAGCCATAT 58.433 36.000 0.00 0.00 37.59 1.78
1515 1554 5.622007 GCAAATAACTGCAACTTCAGCCATA 60.622 40.000 0.00 0.00 42.17 2.74
1541 1580 4.681978 AAGTCACCGTCGCCTGCC 62.682 66.667 0.00 0.00 0.00 4.85
1547 1586 0.776451 CTTTCACGAAGTCACCGTCG 59.224 55.000 0.00 0.00 41.61 5.12
1604 1643 2.461110 CGGGTGGCGTATGACAAGC 61.461 63.158 0.00 0.00 32.32 4.01
1660 1699 0.676736 CTCTTCCAGATCTACGGGCC 59.323 60.000 0.00 0.00 33.91 5.80
1664 1708 4.582701 AATGCTCTCTTCCAGATCTACG 57.417 45.455 0.00 0.00 0.00 3.51
1668 1712 3.212685 CCCAAATGCTCTCTTCCAGATC 58.787 50.000 0.00 0.00 0.00 2.75
1671 1715 2.503895 ACCCAAATGCTCTCTTCCAG 57.496 50.000 0.00 0.00 0.00 3.86
1706 1750 1.872653 GCTCTTTCTGAACGTTCCGGT 60.873 52.381 24.78 0.00 0.00 5.28
1707 1751 0.790814 GCTCTTTCTGAACGTTCCGG 59.209 55.000 24.78 17.07 0.00 5.14
1730 1775 5.241728 AGCAAAACTCAGTCAATAACCTTCC 59.758 40.000 0.00 0.00 0.00 3.46
1731 1776 6.145535 CAGCAAAACTCAGTCAATAACCTTC 58.854 40.000 0.00 0.00 0.00 3.46
1772 1817 0.587768 TGCAAATGTCGAGCACACAG 59.412 50.000 0.00 0.00 38.04 3.66
1876 1923 5.392380 CCATAAACTCATGAAACAGAGTGGC 60.392 44.000 0.00 0.00 43.88 5.01
1919 1966 4.957327 AGGAACAGAGGGAGTAGATGTTAC 59.043 45.833 0.00 0.00 35.38 2.50
1930 1977 7.234988 GGCTAGTAATATTTAGGAACAGAGGGA 59.765 40.741 0.00 0.00 0.00 4.20
1931 1978 7.235812 AGGCTAGTAATATTTAGGAACAGAGGG 59.764 40.741 0.00 0.00 0.00 4.30
1932 1979 8.196378 AGGCTAGTAATATTTAGGAACAGAGG 57.804 38.462 0.00 0.00 0.00 3.69
2003 2050 9.515020 GCGAAATGGATGAATTTACATCTAAAA 57.485 29.630 0.00 0.00 44.02 1.52
2004 2051 8.902806 AGCGAAATGGATGAATTTACATCTAAA 58.097 29.630 0.00 0.00 44.02 1.85
2005 2052 8.450578 AGCGAAATGGATGAATTTACATCTAA 57.549 30.769 0.00 0.00 44.02 2.10
2006 2053 7.173218 GGAGCGAAATGGATGAATTTACATCTA 59.827 37.037 0.00 0.00 44.02 1.98
2007 2054 6.016777 GGAGCGAAATGGATGAATTTACATCT 60.017 38.462 0.00 0.00 44.02 2.90
2008 2055 6.145535 GGAGCGAAATGGATGAATTTACATC 58.854 40.000 0.00 0.00 43.88 3.06
2009 2056 5.593909 TGGAGCGAAATGGATGAATTTACAT 59.406 36.000 0.00 0.00 29.89 2.29
2010 2057 4.946772 TGGAGCGAAATGGATGAATTTACA 59.053 37.500 0.00 0.00 29.89 2.41
2011 2058 5.499139 TGGAGCGAAATGGATGAATTTAC 57.501 39.130 0.00 0.00 29.89 2.01
2012 2059 6.096705 ACATTGGAGCGAAATGGATGAATTTA 59.903 34.615 11.90 0.00 38.98 1.40
2013 2060 5.105228 ACATTGGAGCGAAATGGATGAATTT 60.105 36.000 11.90 0.00 38.98 1.82
2014 2061 4.403432 ACATTGGAGCGAAATGGATGAATT 59.597 37.500 11.90 0.00 38.98 2.17
2015 2062 3.956199 ACATTGGAGCGAAATGGATGAAT 59.044 39.130 11.90 0.00 38.98 2.57
2016 2063 3.355378 ACATTGGAGCGAAATGGATGAA 58.645 40.909 11.90 0.00 38.98 2.57
2017 2064 3.003394 ACATTGGAGCGAAATGGATGA 57.997 42.857 11.90 0.00 38.98 2.92
2018 2065 3.879295 ACTACATTGGAGCGAAATGGATG 59.121 43.478 11.90 5.77 38.98 3.51
2019 2066 4.130118 GACTACATTGGAGCGAAATGGAT 58.870 43.478 11.90 0.25 38.98 3.41
2020 2067 3.531538 GACTACATTGGAGCGAAATGGA 58.468 45.455 11.90 4.51 38.98 3.41
2021 2068 2.614057 GGACTACATTGGAGCGAAATGG 59.386 50.000 11.90 1.06 38.98 3.16
2022 2069 3.270027 TGGACTACATTGGAGCGAAATG 58.730 45.455 0.00 7.30 40.23 2.32
2023 2070 3.627395 TGGACTACATTGGAGCGAAAT 57.373 42.857 0.00 0.00 0.00 2.17
2024 2071 3.627395 ATGGACTACATTGGAGCGAAA 57.373 42.857 0.00 0.00 35.97 3.46
2025 2072 4.955811 ATATGGACTACATTGGAGCGAA 57.044 40.909 0.00 0.00 41.03 4.70
2026 2073 4.955811 AATATGGACTACATTGGAGCGA 57.044 40.909 0.00 0.00 41.03 4.93
2027 2074 6.025749 TCTAATATGGACTACATTGGAGCG 57.974 41.667 0.00 0.00 41.03 5.03
2028 2075 7.276658 CGATTCTAATATGGACTACATTGGAGC 59.723 40.741 0.00 0.00 41.03 4.70
2029 2076 7.276658 GCGATTCTAATATGGACTACATTGGAG 59.723 40.741 0.00 0.00 41.03 3.86
2030 2077 7.039011 AGCGATTCTAATATGGACTACATTGGA 60.039 37.037 0.00 0.00 41.03 3.53
2031 2078 7.099764 AGCGATTCTAATATGGACTACATTGG 58.900 38.462 0.00 0.00 41.03 3.16
2032 2079 9.639601 TTAGCGATTCTAATATGGACTACATTG 57.360 33.333 0.00 0.00 35.44 2.82
2038 2085 9.262358 GTCTTTTTAGCGATTCTAATATGGACT 57.738 33.333 0.00 0.00 37.14 3.85
2039 2086 8.496751 GGTCTTTTTAGCGATTCTAATATGGAC 58.503 37.037 0.00 0.00 37.14 4.02
2040 2087 8.429641 AGGTCTTTTTAGCGATTCTAATATGGA 58.570 33.333 0.00 0.00 37.14 3.41
2041 2088 8.608844 AGGTCTTTTTAGCGATTCTAATATGG 57.391 34.615 0.00 0.00 37.14 2.74
2053 2100 7.148787 CGCTCCTAAATATAGGTCTTTTTAGCG 60.149 40.741 13.70 13.70 46.69 4.26
2065 2112 5.986501 ACTTCCTCCGCTCCTAAATATAG 57.013 43.478 0.00 0.00 0.00 1.31
2066 2113 6.779049 TGTTACTTCCTCCGCTCCTAAATATA 59.221 38.462 0.00 0.00 0.00 0.86
2067 2114 5.601313 TGTTACTTCCTCCGCTCCTAAATAT 59.399 40.000 0.00 0.00 0.00 1.28
2068 2115 4.957954 TGTTACTTCCTCCGCTCCTAAATA 59.042 41.667 0.00 0.00 0.00 1.40
2069 2116 3.773119 TGTTACTTCCTCCGCTCCTAAAT 59.227 43.478 0.00 0.00 0.00 1.40
2070 2117 3.167485 TGTTACTTCCTCCGCTCCTAAA 58.833 45.455 0.00 0.00 0.00 1.85
2071 2118 2.811410 TGTTACTTCCTCCGCTCCTAA 58.189 47.619 0.00 0.00 0.00 2.69
2072 2119 2.519771 TGTTACTTCCTCCGCTCCTA 57.480 50.000 0.00 0.00 0.00 2.94
2073 2120 1.482593 CATGTTACTTCCTCCGCTCCT 59.517 52.381 0.00 0.00 0.00 3.69
2074 2121 1.473434 CCATGTTACTTCCTCCGCTCC 60.473 57.143 0.00 0.00 0.00 4.70
2075 2122 1.480954 TCCATGTTACTTCCTCCGCTC 59.519 52.381 0.00 0.00 0.00 5.03
2076 2123 1.568504 TCCATGTTACTTCCTCCGCT 58.431 50.000 0.00 0.00 0.00 5.52
2077 2124 2.158957 TCATCCATGTTACTTCCTCCGC 60.159 50.000 0.00 0.00 0.00 5.54
2078 2125 3.133003 AGTCATCCATGTTACTTCCTCCG 59.867 47.826 0.00 0.00 0.00 4.63
2079 2126 4.162320 TCAGTCATCCATGTTACTTCCTCC 59.838 45.833 0.00 0.00 0.00 4.30
2080 2127 5.112686 GTCAGTCATCCATGTTACTTCCTC 58.887 45.833 0.00 0.00 0.00 3.71
2081 2128 4.532126 TGTCAGTCATCCATGTTACTTCCT 59.468 41.667 0.00 0.00 0.00 3.36
2082 2129 4.832248 TGTCAGTCATCCATGTTACTTCC 58.168 43.478 0.00 0.00 0.00 3.46
2083 2130 6.992063 AATGTCAGTCATCCATGTTACTTC 57.008 37.500 0.00 0.00 35.48 3.01
2084 2131 6.942005 TCAAATGTCAGTCATCCATGTTACTT 59.058 34.615 0.00 0.00 35.48 2.24
2085 2132 6.475504 TCAAATGTCAGTCATCCATGTTACT 58.524 36.000 0.00 0.00 35.48 2.24
2086 2133 6.741992 TCAAATGTCAGTCATCCATGTTAC 57.258 37.500 0.00 0.00 35.48 2.50
2162 2219 8.019669 CGCTTCTTATTCATAGGAATGGAAATG 58.980 37.037 12.74 7.40 43.47 2.32
2198 2260 9.967346 CGATCTCCACTATTTAGTTAAATCTCA 57.033 33.333 0.63 0.00 37.16 3.27
2209 2271 5.105106 TGGCTTTCACGATCTCCACTATTTA 60.105 40.000 0.00 0.00 0.00 1.40
2232 2294 1.901159 TGTCCCCTGCCAAATGAAATG 59.099 47.619 0.00 0.00 0.00 2.32
2233 2295 2.181975 CTGTCCCCTGCCAAATGAAAT 58.818 47.619 0.00 0.00 0.00 2.17
2248 2311 4.934602 CCTTCTTGATCTTCAGAACTGTCC 59.065 45.833 1.73 0.00 0.00 4.02
2250 2313 5.163258 ACACCTTCTTGATCTTCAGAACTGT 60.163 40.000 1.73 0.00 0.00 3.55
2267 2330 0.252197 ACGCCTATCCCAACACCTTC 59.748 55.000 0.00 0.00 0.00 3.46
2272 2335 0.833949 TGCATACGCCTATCCCAACA 59.166 50.000 0.00 0.00 37.32 3.33
2274 2337 1.202758 CCTTGCATACGCCTATCCCAA 60.203 52.381 0.00 0.00 37.32 4.12
2275 2338 0.396435 CCTTGCATACGCCTATCCCA 59.604 55.000 0.00 0.00 37.32 4.37
2276 2339 0.321653 CCCTTGCATACGCCTATCCC 60.322 60.000 0.00 0.00 37.32 3.85
2279 2342 1.761174 CCCCCTTGCATACGCCTAT 59.239 57.895 0.00 0.00 37.32 2.57
2280 2343 3.114825 GCCCCCTTGCATACGCCTA 62.115 63.158 0.00 0.00 37.32 3.93
2281 2344 4.506255 GCCCCCTTGCATACGCCT 62.506 66.667 0.00 0.00 37.32 5.52
2282 2345 3.114825 TAGCCCCCTTGCATACGCC 62.115 63.158 0.00 0.00 37.32 5.68
2283 2346 1.598130 CTAGCCCCCTTGCATACGC 60.598 63.158 0.00 0.00 39.24 4.42
2284 2347 1.071471 CCTAGCCCCCTTGCATACG 59.929 63.158 0.00 0.00 0.00 3.06
2286 2349 0.768221 CCTCCTAGCCCCCTTGCATA 60.768 60.000 0.00 0.00 0.00 3.14
2287 2350 2.081161 CCTCCTAGCCCCCTTGCAT 61.081 63.158 0.00 0.00 0.00 3.96
2288 2351 2.567769 ATCCTCCTAGCCCCCTTGCA 62.568 60.000 0.00 0.00 0.00 4.08
2290 2353 0.104725 AGATCCTCCTAGCCCCCTTG 60.105 60.000 0.00 0.00 0.00 3.61
2294 2357 0.766288 AAGCAGATCCTCCTAGCCCC 60.766 60.000 0.00 0.00 0.00 5.80
2295 2358 0.396060 CAAGCAGATCCTCCTAGCCC 59.604 60.000 0.00 0.00 0.00 5.19
2329 2395 2.108976 CACACACCCAGAGCACGT 59.891 61.111 0.00 0.00 0.00 4.49
2380 2447 2.462456 TGAAACACAGCTCTGCTAGG 57.538 50.000 0.00 0.00 36.40 3.02
2383 2450 0.950116 GCTTGAAACACAGCTCTGCT 59.050 50.000 0.00 0.00 40.77 4.24
2389 2456 1.601412 GCAGGAAGCTTGAAACACAGC 60.601 52.381 2.10 0.00 41.15 4.40
2406 2473 2.201732 ACAGACAACAACTACACGCAG 58.798 47.619 0.00 0.00 0.00 5.18
2419 2486 4.507710 GAACATATGAGGCAGACAGACAA 58.492 43.478 10.38 0.00 0.00 3.18
2432 2499 4.591321 AAGAAAGCCTGGGAACATATGA 57.409 40.909 10.38 0.00 41.51 2.15
2452 2519 6.413892 AGAGTGGAAATGGCAAAAAGAAAAA 58.586 32.000 0.00 0.00 0.00 1.94
2493 2581 3.737850 AGCCTCCTCATCGATTTTCATC 58.262 45.455 0.00 0.00 0.00 2.92
2521 2730 4.050553 TCTTGCGCCAAATTTCTTTTGAG 58.949 39.130 4.18 0.00 46.36 3.02
2578 2787 7.269724 CCGGTTTTGAGTTAAACAAATATCGAC 59.730 37.037 15.99 9.91 39.27 4.20
2585 2794 9.896263 GTATTATCCGGTTTTGAGTTAAACAAA 57.104 29.630 0.00 5.38 39.27 2.83
2600 2809 5.775701 AGACTAGAGCATTGTATTATCCGGT 59.224 40.000 0.00 0.00 0.00 5.28
2601 2810 6.274157 AGACTAGAGCATTGTATTATCCGG 57.726 41.667 0.00 0.00 0.00 5.14
2602 2811 7.371159 TCAAGACTAGAGCATTGTATTATCCG 58.629 38.462 0.00 0.00 0.00 4.18
2603 2812 8.580720 TCTCAAGACTAGAGCATTGTATTATCC 58.419 37.037 0.00 0.00 33.15 2.59
2605 2814 9.926158 CATCTCAAGACTAGAGCATTGTATTAT 57.074 33.333 0.00 0.00 33.15 1.28
2606 2815 8.918116 ACATCTCAAGACTAGAGCATTGTATTA 58.082 33.333 0.00 0.00 33.15 0.98
2607 2816 7.710044 CACATCTCAAGACTAGAGCATTGTATT 59.290 37.037 0.00 0.00 33.15 1.89
2608 2817 7.208777 CACATCTCAAGACTAGAGCATTGTAT 58.791 38.462 0.00 0.00 33.15 2.29
2609 2818 6.567959 CACATCTCAAGACTAGAGCATTGTA 58.432 40.000 0.00 0.00 33.15 2.41
2610 2819 5.417811 CACATCTCAAGACTAGAGCATTGT 58.582 41.667 0.00 0.00 33.15 2.71
2611 2820 4.270566 GCACATCTCAAGACTAGAGCATTG 59.729 45.833 0.00 0.00 33.15 2.82
2612 2821 4.440880 GCACATCTCAAGACTAGAGCATT 58.559 43.478 0.00 0.00 33.15 3.56
2613 2822 3.490590 CGCACATCTCAAGACTAGAGCAT 60.491 47.826 0.00 0.00 33.15 3.79
2614 2823 2.159324 CGCACATCTCAAGACTAGAGCA 60.159 50.000 0.00 0.00 33.15 4.26
2615 2824 2.159310 ACGCACATCTCAAGACTAGAGC 60.159 50.000 0.00 0.00 33.15 4.09
2616 2825 3.119673 ACACGCACATCTCAAGACTAGAG 60.120 47.826 0.00 0.00 34.42 2.43
2617 2826 2.820197 ACACGCACATCTCAAGACTAGA 59.180 45.455 0.00 0.00 0.00 2.43
2618 2827 2.919859 CACACGCACATCTCAAGACTAG 59.080 50.000 0.00 0.00 0.00 2.57
2619 2828 2.296190 ACACACGCACATCTCAAGACTA 59.704 45.455 0.00 0.00 0.00 2.59
2620 2829 1.069204 ACACACGCACATCTCAAGACT 59.931 47.619 0.00 0.00 0.00 3.24
2621 2830 1.502231 ACACACGCACATCTCAAGAC 58.498 50.000 0.00 0.00 0.00 3.01
2622 2831 3.592898 ATACACACGCACATCTCAAGA 57.407 42.857 0.00 0.00 0.00 3.02
2623 2832 4.266265 CACTATACACACGCACATCTCAAG 59.734 45.833 0.00 0.00 0.00 3.02
2624 2833 4.173256 CACTATACACACGCACATCTCAA 58.827 43.478 0.00 0.00 0.00 3.02
2625 2834 3.428862 CCACTATACACACGCACATCTCA 60.429 47.826 0.00 0.00 0.00 3.27
2626 2835 3.116300 CCACTATACACACGCACATCTC 58.884 50.000 0.00 0.00 0.00 2.75
2627 2836 2.738643 GCCACTATACACACGCACATCT 60.739 50.000 0.00 0.00 0.00 2.90
2628 2837 1.593006 GCCACTATACACACGCACATC 59.407 52.381 0.00 0.00 0.00 3.06
2629 2838 1.651987 GCCACTATACACACGCACAT 58.348 50.000 0.00 0.00 0.00 3.21
2630 2839 0.734597 CGCCACTATACACACGCACA 60.735 55.000 0.00 0.00 0.00 4.57
2631 2840 0.734942 ACGCCACTATACACACGCAC 60.735 55.000 0.00 0.00 0.00 5.34
2632 2841 0.734597 CACGCCACTATACACACGCA 60.735 55.000 0.00 0.00 0.00 5.24
2633 2842 1.995991 CACGCCACTATACACACGC 59.004 57.895 0.00 0.00 0.00 5.34
2634 2843 0.734597 TGCACGCCACTATACACACG 60.735 55.000 0.00 0.00 0.00 4.49
2635 2844 1.327460 CATGCACGCCACTATACACAC 59.673 52.381 0.00 0.00 0.00 3.82
2636 2845 1.066502 ACATGCACGCCACTATACACA 60.067 47.619 0.00 0.00 0.00 3.72
2637 2846 1.327460 CACATGCACGCCACTATACAC 59.673 52.381 0.00 0.00 0.00 2.90
2638 2847 1.066502 ACACATGCACGCCACTATACA 60.067 47.619 0.00 0.00 0.00 2.29
2639 2848 1.327460 CACACATGCACGCCACTATAC 59.673 52.381 0.00 0.00 0.00 1.47
2640 2849 1.650825 CACACATGCACGCCACTATA 58.349 50.000 0.00 0.00 0.00 1.31
2641 2850 2.470156 CACACATGCACGCCACTAT 58.530 52.632 0.00 0.00 0.00 2.12
2642 2851 3.964718 CACACATGCACGCCACTA 58.035 55.556 0.00 0.00 0.00 2.74
2652 2861 1.370778 CCAAGCACACGCACACATG 60.371 57.895 0.00 0.00 42.27 3.21
2653 2862 1.823470 ACCAAGCACACGCACACAT 60.823 52.632 0.00 0.00 42.27 3.21
2654 2863 2.437537 ACCAAGCACACGCACACA 60.438 55.556 0.00 0.00 42.27 3.72
2655 2864 1.785041 ATCACCAAGCACACGCACAC 61.785 55.000 0.00 0.00 42.27 3.82
2656 2865 1.100463 AATCACCAAGCACACGCACA 61.100 50.000 0.00 0.00 42.27 4.57
2657 2866 0.385974 GAATCACCAAGCACACGCAC 60.386 55.000 0.00 0.00 42.27 5.34
2658 2867 0.534877 AGAATCACCAAGCACACGCA 60.535 50.000 0.00 0.00 42.27 5.24
2659 2868 1.438651 TAGAATCACCAAGCACACGC 58.561 50.000 0.00 0.00 38.99 5.34
2660 2869 4.481930 TTTTAGAATCACCAAGCACACG 57.518 40.909 0.00 0.00 0.00 4.49
2661 2870 5.831997 ACTTTTTAGAATCACCAAGCACAC 58.168 37.500 0.00 0.00 0.00 3.82
2662 2871 6.463995 AACTTTTTAGAATCACCAAGCACA 57.536 33.333 0.00 0.00 0.00 4.57
2663 2872 8.296713 TCATAACTTTTTAGAATCACCAAGCAC 58.703 33.333 0.00 0.00 0.00 4.40
2664 2873 8.402798 TCATAACTTTTTAGAATCACCAAGCA 57.597 30.769 0.00 0.00 0.00 3.91
2665 2874 9.129209 GTTCATAACTTTTTAGAATCACCAAGC 57.871 33.333 0.00 0.00 0.00 4.01
2695 2904 9.566432 GTGATTCAATCTAAGGAGGTAATTCAT 57.434 33.333 0.00 0.00 0.00 2.57
2696 2905 8.772250 AGTGATTCAATCTAAGGAGGTAATTCA 58.228 33.333 0.00 0.00 0.00 2.57
2701 2910 9.434275 TGAATAGTGATTCAATCTAAGGAGGTA 57.566 33.333 0.00 0.00 46.75 3.08
2702 2911 8.324191 TGAATAGTGATTCAATCTAAGGAGGT 57.676 34.615 0.00 0.00 46.75 3.85
2715 2924 8.025445 ACTGCTTGATTGTTTGAATAGTGATTC 58.975 33.333 0.00 0.00 41.72 2.52
2716 2925 7.889469 ACTGCTTGATTGTTTGAATAGTGATT 58.111 30.769 0.00 0.00 0.00 2.57
2717 2926 7.458409 ACTGCTTGATTGTTTGAATAGTGAT 57.542 32.000 0.00 0.00 0.00 3.06
2718 2927 6.882610 ACTGCTTGATTGTTTGAATAGTGA 57.117 33.333 0.00 0.00 0.00 3.41
2719 2928 7.935338 AAACTGCTTGATTGTTTGAATAGTG 57.065 32.000 0.00 0.00 33.36 2.74
2720 2929 8.947055 AAAAACTGCTTGATTGTTTGAATAGT 57.053 26.923 0.00 0.00 34.63 2.12
2756 2965 9.211485 CCAAAAGAATGCTCAAGAAAATGTTAT 57.789 29.630 0.00 0.00 0.00 1.89
2757 2966 7.656948 CCCAAAAGAATGCTCAAGAAAATGTTA 59.343 33.333 0.00 0.00 0.00 2.41
2758 2967 6.484308 CCCAAAAGAATGCTCAAGAAAATGTT 59.516 34.615 0.00 0.00 0.00 2.71
2759 2968 5.993441 CCCAAAAGAATGCTCAAGAAAATGT 59.007 36.000 0.00 0.00 0.00 2.71
2760 2969 5.410439 CCCCAAAAGAATGCTCAAGAAAATG 59.590 40.000 0.00 0.00 0.00 2.32
2761 2970 5.554070 CCCCAAAAGAATGCTCAAGAAAAT 58.446 37.500 0.00 0.00 0.00 1.82
2762 2971 4.743348 GCCCCAAAAGAATGCTCAAGAAAA 60.743 41.667 0.00 0.00 0.00 2.29
2763 2972 3.244181 GCCCCAAAAGAATGCTCAAGAAA 60.244 43.478 0.00 0.00 0.00 2.52
2764 2973 2.299867 GCCCCAAAAGAATGCTCAAGAA 59.700 45.455 0.00 0.00 0.00 2.52
2765 2974 1.895131 GCCCCAAAAGAATGCTCAAGA 59.105 47.619 0.00 0.00 0.00 3.02
2766 2975 1.619827 TGCCCCAAAAGAATGCTCAAG 59.380 47.619 0.00 0.00 0.00 3.02
2767 2976 1.714541 TGCCCCAAAAGAATGCTCAA 58.285 45.000 0.00 0.00 0.00 3.02
2768 2977 1.941377 ATGCCCCAAAAGAATGCTCA 58.059 45.000 0.00 0.00 0.00 4.26
2769 2978 4.470334 TTAATGCCCCAAAAGAATGCTC 57.530 40.909 0.00 0.00 0.00 4.26
2770 2979 4.906747 TTTAATGCCCCAAAAGAATGCT 57.093 36.364 0.00 0.00 0.00 3.79
2771 2980 5.184711 TGATTTAATGCCCCAAAAGAATGC 58.815 37.500 0.00 0.00 0.00 3.56
2772 2981 7.012610 GGATTGATTTAATGCCCCAAAAGAATG 59.987 37.037 0.00 0.00 31.52 2.67
2773 2982 7.056006 GGATTGATTTAATGCCCCAAAAGAAT 58.944 34.615 0.00 0.00 31.52 2.40
2774 2983 6.413892 GGATTGATTTAATGCCCCAAAAGAA 58.586 36.000 0.00 0.00 31.52 2.52
2775 2984 5.988287 GGATTGATTTAATGCCCCAAAAGA 58.012 37.500 0.00 0.00 31.52 2.52
2784 2993 1.335872 CGGCGGGGATTGATTTAATGC 60.336 52.381 0.00 0.00 36.47 3.56
2785 2994 1.335872 GCGGCGGGGATTGATTTAATG 60.336 52.381 9.78 0.00 0.00 1.90
2786 2995 0.958822 GCGGCGGGGATTGATTTAAT 59.041 50.000 9.78 0.00 0.00 1.40
2787 2996 1.104577 GGCGGCGGGGATTGATTTAA 61.105 55.000 9.78 0.00 0.00 1.52
2788 2997 1.527380 GGCGGCGGGGATTGATTTA 60.527 57.895 9.78 0.00 0.00 1.40
2789 2998 2.833121 GGCGGCGGGGATTGATTT 60.833 61.111 9.78 0.00 0.00 2.17
2790 2999 2.927201 AATGGCGGCGGGGATTGATT 62.927 55.000 9.78 0.00 0.00 2.57
2791 3000 3.435525 AATGGCGGCGGGGATTGAT 62.436 57.895 9.78 0.00 0.00 2.57
2792 3001 4.122149 AATGGCGGCGGGGATTGA 62.122 61.111 9.78 0.00 0.00 2.57
2793 3002 3.903282 CAATGGCGGCGGGGATTG 61.903 66.667 9.78 4.88 0.00 2.67
2794 3003 4.122149 TCAATGGCGGCGGGGATT 62.122 61.111 9.78 0.00 0.00 3.01
2795 3004 4.875713 GTCAATGGCGGCGGGGAT 62.876 66.667 9.78 0.00 0.00 3.85
2797 3006 4.169696 TAGTCAATGGCGGCGGGG 62.170 66.667 9.78 0.00 0.00 5.73
2798 3007 2.895372 GTAGTCAATGGCGGCGGG 60.895 66.667 9.78 0.00 0.00 6.13
2799 3008 2.895372 GGTAGTCAATGGCGGCGG 60.895 66.667 9.78 0.00 0.00 6.13
2800 3009 2.895372 GGGTAGTCAATGGCGGCG 60.895 66.667 0.51 0.51 0.00 6.46
2801 3010 0.751643 ATTGGGTAGTCAATGGCGGC 60.752 55.000 0.00 0.00 36.16 6.53
2802 3011 1.762708 AATTGGGTAGTCAATGGCGG 58.237 50.000 0.00 0.00 37.42 6.13
2803 3012 3.192422 TCAAAATTGGGTAGTCAATGGCG 59.808 43.478 0.00 0.00 37.42 5.69
2804 3013 4.494484 GTCAAAATTGGGTAGTCAATGGC 58.506 43.478 0.00 0.00 37.42 4.40
2805 3014 4.380444 CGGTCAAAATTGGGTAGTCAATGG 60.380 45.833 0.00 0.00 37.42 3.16
2806 3015 4.217550 ACGGTCAAAATTGGGTAGTCAATG 59.782 41.667 0.00 0.00 37.42 2.82
2807 3016 4.403734 ACGGTCAAAATTGGGTAGTCAAT 58.596 39.130 0.00 0.00 38.84 2.57
2808 3017 3.816523 GACGGTCAAAATTGGGTAGTCAA 59.183 43.478 2.62 0.00 0.00 3.18
2809 3018 3.404899 GACGGTCAAAATTGGGTAGTCA 58.595 45.455 2.62 0.00 0.00 3.41
2810 3019 2.745821 GGACGGTCAAAATTGGGTAGTC 59.254 50.000 10.76 0.00 0.00 2.59
2811 3020 2.106857 TGGACGGTCAAAATTGGGTAGT 59.893 45.455 10.76 0.00 0.00 2.73
2812 3021 2.785562 TGGACGGTCAAAATTGGGTAG 58.214 47.619 10.76 0.00 0.00 3.18
2813 3022 2.953284 TGGACGGTCAAAATTGGGTA 57.047 45.000 10.76 0.00 0.00 3.69
2814 3023 2.167662 GATGGACGGTCAAAATTGGGT 58.832 47.619 10.76 0.00 0.00 4.51
2815 3024 2.094752 GTGATGGACGGTCAAAATTGGG 60.095 50.000 10.76 0.00 0.00 4.12
2816 3025 2.094752 GGTGATGGACGGTCAAAATTGG 60.095 50.000 10.76 0.00 0.00 3.16
2817 3026 2.556189 TGGTGATGGACGGTCAAAATTG 59.444 45.455 10.76 0.00 0.00 2.32
2818 3027 2.870175 TGGTGATGGACGGTCAAAATT 58.130 42.857 10.76 0.00 0.00 1.82
2819 3028 2.577606 TGGTGATGGACGGTCAAAAT 57.422 45.000 10.76 0.24 0.00 1.82
2820 3029 2.224646 TGATGGTGATGGACGGTCAAAA 60.225 45.455 10.76 0.00 0.00 2.44
2821 3030 1.349357 TGATGGTGATGGACGGTCAAA 59.651 47.619 10.76 0.00 0.00 2.69
2822 3031 0.980423 TGATGGTGATGGACGGTCAA 59.020 50.000 10.76 0.00 0.00 3.18
2823 3032 0.536724 CTGATGGTGATGGACGGTCA 59.463 55.000 10.76 0.00 0.00 4.02
2824 3033 0.811616 GCTGATGGTGATGGACGGTC 60.812 60.000 0.00 0.00 0.00 4.79
2825 3034 1.221840 GCTGATGGTGATGGACGGT 59.778 57.895 0.00 0.00 0.00 4.83
2826 3035 0.179037 ATGCTGATGGTGATGGACGG 60.179 55.000 0.00 0.00 0.00 4.79
2827 3036 1.224075 GATGCTGATGGTGATGGACG 58.776 55.000 0.00 0.00 0.00 4.79
2828 3037 1.202568 TCGATGCTGATGGTGATGGAC 60.203 52.381 0.00 0.00 0.00 4.02
2829 3038 1.069668 CTCGATGCTGATGGTGATGGA 59.930 52.381 0.00 0.00 0.00 3.41
2830 3039 1.509703 CTCGATGCTGATGGTGATGG 58.490 55.000 0.00 0.00 0.00 3.51
2831 3040 0.866427 GCTCGATGCTGATGGTGATG 59.134 55.000 0.00 0.00 38.95 3.07
2832 3041 3.302375 GCTCGATGCTGATGGTGAT 57.698 52.632 0.00 0.00 38.95 3.06
2833 3042 4.842292 GCTCGATGCTGATGGTGA 57.158 55.556 0.00 0.00 38.95 4.02
2842 3051 1.275066 GCACGATGAAGCTCGATGC 59.725 57.895 0.00 3.16 41.12 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.