Multiple sequence alignment - TraesCS2A01G310100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G310100 chr2A 100.000 2474 0 0 1 2474 533547595 533545122 0.000000e+00 4569.0
1 TraesCS2A01G310100 chr2A 81.410 156 24 4 2027 2178 51641553 51641399 3.340000e-24 122.0
2 TraesCS2A01G310100 chr2B 97.458 708 17 1 843 1550 468455214 468454508 0.000000e+00 1206.0
3 TraesCS2A01G310100 chr2B 86.010 965 99 18 1539 2474 468454482 468453525 0.000000e+00 1002.0
4 TraesCS2A01G310100 chr2B 85.338 532 71 4 4 528 468458544 468458013 6.020000e-151 544.0
5 TraesCS2A01G310100 chr2B 76.800 375 78 8 1663 2031 172178795 172179166 4.170000e-48 202.0
6 TraesCS2A01G310100 chr2B 90.426 94 8 1 754 846 468457954 468457861 3.340000e-24 122.0
7 TraesCS2A01G310100 chr2D 96.765 680 14 5 879 1550 395320736 395320057 0.000000e+00 1127.0
8 TraesCS2A01G310100 chr2D 77.070 314 47 11 1550 1850 395320021 395319720 9.160000e-35 158.0
9 TraesCS2A01G310100 chr2D 92.593 54 4 0 780 833 395320785 395320732 7.340000e-11 78.7
10 TraesCS2A01G310100 chr1D 77.546 432 86 6 1609 2031 452590018 452589589 1.470000e-62 250.0
11 TraesCS2A01G310100 chr4A 76.835 436 85 9 1609 2031 599611239 599611671 5.320000e-57 231.0
12 TraesCS2A01G310100 chr4A 83.784 148 19 4 2035 2178 654719524 654719378 4.290000e-28 135.0
13 TraesCS2A01G310100 chr4A 81.457 151 24 3 2027 2174 591515544 591515395 1.200000e-23 121.0
14 TraesCS2A01G310100 chr4A 81.457 151 24 3 2027 2174 593095315 593095464 1.200000e-23 121.0
15 TraesCS2A01G310100 chr4A 80.795 151 25 3 2027 2174 592528760 592528909 5.590000e-22 115.0
16 TraesCS2A01G310100 chr4A 76.606 218 41 6 1756 1969 84921341 84921130 7.230000e-21 111.0
17 TraesCS2A01G310100 chr4A 100.000 29 0 0 482 510 32683216 32683244 1.000000e-03 54.7
18 TraesCS2A01G310100 chr7D 75.917 436 87 11 1609 2031 403744530 403744100 8.970000e-50 207.0
19 TraesCS2A01G310100 chr7D 76.744 301 58 8 1738 2031 92720317 92720022 9.160000e-35 158.0
20 TraesCS2A01G310100 chr4B 77.077 349 64 14 1692 2031 541846883 541847224 1.170000e-43 187.0
21 TraesCS2A01G310100 chr3D 82.273 220 32 5 1806 2020 527068200 527068417 1.510000e-42 183.0
22 TraesCS2A01G310100 chr3D 75.776 322 63 14 1703 2017 362203595 362203908 5.510000e-32 148.0
23 TraesCS2A01G310100 chr3D 77.007 274 44 11 1609 1872 122669839 122669575 3.320000e-29 139.0
24 TraesCS2A01G310100 chr3B 78.475 223 40 7 462 682 440515271 440515055 3.320000e-29 139.0
25 TraesCS2A01G310100 chr3B 82.119 151 21 6 2027 2173 567533653 567533505 9.290000e-25 124.0
26 TraesCS2A01G310100 chr7B 82.781 151 21 4 2027 2173 552567522 552567373 2.000000e-26 130.0
27 TraesCS2A01G310100 chr7B 72.973 259 59 9 52 306 744175475 744175224 2.040000e-11 80.5
28 TraesCS2A01G310100 chr1B 84.328 134 17 3 2027 2157 606363490 606363622 7.180000e-26 128.0
29 TraesCS2A01G310100 chr5B 77.273 220 44 5 1745 1959 283202917 283203135 9.290000e-25 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G310100 chr2A 533545122 533547595 2473 True 4569.000000 4569 100.000000 1 2474 1 chr2A.!!$R2 2473
1 TraesCS2A01G310100 chr2B 468453525 468458544 5019 True 718.500000 1206 89.808000 4 2474 4 chr2B.!!$R1 2470
2 TraesCS2A01G310100 chr2D 395319720 395320785 1065 True 454.566667 1127 88.809333 780 1850 3 chr2D.!!$R1 1070

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
617 625 0.101399 CGAAGCCGCTGTAGATGTCT 59.899 55.0 0.0 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1693 4462 0.036388 ACGAATCAGACCGGTGCAAT 60.036 50.0 14.63 0.0 0.0 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 1.605971 TAGGGTTCGGTATGCACGCA 61.606 55.000 0.00 0.00 0.00 5.24
60 61 4.094294 GCAAGTGATGTCGGCTATTTGTAA 59.906 41.667 0.00 0.00 0.00 2.41
64 65 5.938125 AGTGATGTCGGCTATTTGTAAAGTT 59.062 36.000 0.00 0.00 0.00 2.66
67 68 8.231837 GTGATGTCGGCTATTTGTAAAGTTTTA 58.768 33.333 0.00 0.00 0.00 1.52
93 94 1.886542 GTGATCCTTCAACAACACCCC 59.113 52.381 0.00 0.00 32.48 4.95
107 108 2.859165 CACCCCATGTGTACTCTTGT 57.141 50.000 9.22 0.00 40.26 3.16
113 114 3.511540 CCCATGTGTACTCTTGTCTCTCA 59.488 47.826 9.22 0.00 0.00 3.27
134 135 4.288366 TCATGGTGATGGTCCTTTTGTCTA 59.712 41.667 0.00 0.00 0.00 2.59
135 136 4.286297 TGGTGATGGTCCTTTTGTCTAG 57.714 45.455 0.00 0.00 0.00 2.43
142 143 8.092687 GTGATGGTCCTTTTGTCTAGTAGTTAA 58.907 37.037 0.00 0.00 0.00 2.01
144 145 6.461640 TGGTCCTTTTGTCTAGTAGTTAAGC 58.538 40.000 0.00 0.00 0.00 3.09
145 146 5.873712 GGTCCTTTTGTCTAGTAGTTAAGCC 59.126 44.000 0.00 0.00 0.00 4.35
146 147 6.295745 GGTCCTTTTGTCTAGTAGTTAAGCCT 60.296 42.308 0.00 0.00 0.00 4.58
153 154 5.110598 GTCTAGTAGTTAAGCCTTGCCTTC 58.889 45.833 0.00 0.00 0.00 3.46
156 157 3.583086 AGTAGTTAAGCCTTGCCTTCTCA 59.417 43.478 0.00 0.00 0.00 3.27
161 162 0.394080 AGCCTTGCCTTCTCATGAGC 60.394 55.000 18.36 7.80 0.00 4.26
172 173 5.698545 GCCTTCTCATGAGCGTCTATATTTT 59.301 40.000 18.36 0.00 0.00 1.82
186 187 7.682021 GCGTCTATATTTTTGGCCTTCTTTCAT 60.682 37.037 3.32 0.00 0.00 2.57
187 188 8.190784 CGTCTATATTTTTGGCCTTCTTTCATT 58.809 33.333 3.32 0.00 0.00 2.57
199 200 6.975197 GGCCTTCTTTCATTCTAATTACTTGC 59.025 38.462 0.00 0.00 0.00 4.01
205 206 5.883328 TCATTCTAATTACTTGCGCGTAG 57.117 39.130 8.43 8.49 0.00 3.51
224 225 3.793797 AGTTTGGTTTGGTTTTCCTCG 57.206 42.857 0.00 0.00 41.38 4.63
232 233 1.228533 TGGTTTTCCTCGTAAACGGC 58.771 50.000 2.24 0.00 41.38 5.68
235 236 1.136529 GTTTTCCTCGTAAACGGCGTC 60.137 52.381 15.17 0.00 40.29 5.19
246 248 2.867456 AACGGCGTCGATTTGTTAAG 57.133 45.000 20.03 0.00 40.11 1.85
264 266 7.670009 TGTTAAGATTTTCGACCGGATTTTA 57.330 32.000 9.46 0.00 0.00 1.52
278 280 8.388103 CGACCGGATTTTATTATACATTGGATC 58.612 37.037 9.46 0.00 0.00 3.36
321 323 3.191162 TCAAATTCTGATGGGAAACGCTG 59.809 43.478 0.00 0.00 0.00 5.18
327 329 3.197766 TCTGATGGGAAACGCTGTAGATT 59.802 43.478 0.00 0.00 0.00 2.40
335 337 4.034510 GGAAACGCTGTAGATTCCATGAAG 59.965 45.833 0.00 0.00 40.81 3.02
344 346 8.844244 GCTGTAGATTCCATGAAGATTAAACAT 58.156 33.333 0.00 0.00 0.00 2.71
427 434 1.722751 GCAGAATTGCTTCGTGTCACG 60.723 52.381 19.38 19.38 46.95 4.35
428 435 1.526887 CAGAATTGCTTCGTGTCACGT 59.473 47.619 23.82 3.64 43.14 4.49
445 452 4.368315 TCACGTATGTGGCACTTATCATC 58.632 43.478 19.83 4.25 46.42 2.92
446 453 3.494626 CACGTATGTGGCACTTATCATCC 59.505 47.826 19.83 3.90 42.59 3.51
448 455 3.552068 CGTATGTGGCACTTATCATCCGA 60.552 47.826 19.83 0.00 0.00 4.55
482 490 2.039818 TTTTGAACACGGTACAGGCA 57.960 45.000 0.00 0.00 0.00 4.75
483 491 1.301423 TTTGAACACGGTACAGGCAC 58.699 50.000 0.00 0.00 0.00 5.01
487 495 1.164041 AACACGGTACAGGCACAAGC 61.164 55.000 0.00 0.00 41.10 4.01
490 498 2.358737 GGTACAGGCACAAGCGCT 60.359 61.111 2.64 2.64 43.41 5.92
491 499 1.966451 GGTACAGGCACAAGCGCTT 60.966 57.895 18.98 18.98 43.41 4.68
493 501 1.369625 GTACAGGCACAAGCGCTTAT 58.630 50.000 24.55 9.39 43.41 1.73
513 521 7.044901 CGCTTATATACACGCACATATACTCAC 60.045 40.741 0.00 0.00 0.00 3.51
515 523 9.841880 CTTATATACACGCACATATACTCACTT 57.158 33.333 0.00 0.00 0.00 3.16
528 536 0.567968 CTCACTTCTATGAACGCGCG 59.432 55.000 30.96 30.96 0.00 6.86
529 537 1.013323 CACTTCTATGAACGCGCGC 60.013 57.895 32.58 23.91 0.00 6.86
532 540 1.682867 CTTCTATGAACGCGCGCACA 61.683 55.000 32.58 28.72 0.00 4.57
541 549 4.312231 GCGCGCACACACACACAT 62.312 61.111 29.10 0.00 0.00 3.21
543 551 2.880167 CGCGCACACACACACATCA 61.880 57.895 8.75 0.00 0.00 3.07
544 552 1.575922 GCGCACACACACACATCAT 59.424 52.632 0.30 0.00 0.00 2.45
545 553 0.726787 GCGCACACACACACATCATG 60.727 55.000 0.30 0.00 0.00 3.07
546 554 0.726787 CGCACACACACACATCATGC 60.727 55.000 0.00 0.00 0.00 4.06
547 555 0.387622 GCACACACACACATCATGCC 60.388 55.000 0.00 0.00 0.00 4.40
548 556 0.241749 CACACACACACATCATGCCC 59.758 55.000 0.00 0.00 0.00 5.36
549 557 0.895100 ACACACACACATCATGCCCC 60.895 55.000 0.00 0.00 0.00 5.80
550 558 0.609957 CACACACACATCATGCCCCT 60.610 55.000 0.00 0.00 0.00 4.79
551 559 0.991146 ACACACACATCATGCCCCTA 59.009 50.000 0.00 0.00 0.00 3.53
552 560 1.565759 ACACACACATCATGCCCCTAT 59.434 47.619 0.00 0.00 0.00 2.57
553 561 1.951602 CACACACATCATGCCCCTATG 59.048 52.381 0.00 0.00 0.00 2.23
554 562 1.845791 ACACACATCATGCCCCTATGA 59.154 47.619 0.00 0.00 41.00 2.15
555 563 2.158711 ACACACATCATGCCCCTATGAG 60.159 50.000 0.00 0.00 40.16 2.90
556 564 1.202855 ACACATCATGCCCCTATGAGC 60.203 52.381 0.00 0.00 40.16 4.26
557 565 1.142936 ACATCATGCCCCTATGAGCA 58.857 50.000 0.00 0.00 44.45 4.26
558 566 1.202855 ACATCATGCCCCTATGAGCAC 60.203 52.381 0.00 0.00 42.84 4.40
559 567 1.142936 ATCATGCCCCTATGAGCACA 58.857 50.000 0.00 0.00 42.84 4.57
560 568 1.142936 TCATGCCCCTATGAGCACAT 58.857 50.000 1.31 1.31 42.84 3.21
561 569 1.072806 TCATGCCCCTATGAGCACATC 59.927 52.381 0.00 0.00 42.84 3.06
562 570 0.403271 ATGCCCCTATGAGCACATCC 59.597 55.000 0.00 0.00 42.84 3.51
563 571 1.302033 GCCCCTATGAGCACATCCG 60.302 63.158 0.00 0.00 37.87 4.18
564 572 1.758440 GCCCCTATGAGCACATCCGA 61.758 60.000 0.00 0.00 37.87 4.55
565 573 0.319728 CCCCTATGAGCACATCCGAG 59.680 60.000 0.00 0.00 37.87 4.63
566 574 0.319728 CCCTATGAGCACATCCGAGG 59.680 60.000 0.00 2.16 37.87 4.63
567 575 0.319728 CCTATGAGCACATCCGAGGG 59.680 60.000 0.00 0.00 37.87 4.30
568 576 1.332195 CTATGAGCACATCCGAGGGA 58.668 55.000 0.00 0.00 37.87 4.20
569 577 1.688735 CTATGAGCACATCCGAGGGAA 59.311 52.381 0.00 0.00 37.87 3.97
570 578 1.135094 ATGAGCACATCCGAGGGAAT 58.865 50.000 0.00 0.00 34.34 3.01
571 579 0.178767 TGAGCACATCCGAGGGAATG 59.821 55.000 0.00 0.00 34.34 2.67
572 580 0.465705 GAGCACATCCGAGGGAATGA 59.534 55.000 4.07 0.00 34.34 2.57
573 581 0.467384 AGCACATCCGAGGGAATGAG 59.533 55.000 4.07 0.00 34.34 2.90
574 582 1.162800 GCACATCCGAGGGAATGAGC 61.163 60.000 4.07 0.00 34.34 4.26
575 583 0.533755 CACATCCGAGGGAATGAGCC 60.534 60.000 0.00 0.00 34.34 4.70
576 584 1.301244 CATCCGAGGGAATGAGCCG 60.301 63.158 0.00 0.00 34.34 5.52
577 585 2.511452 ATCCGAGGGAATGAGCCGG 61.511 63.158 0.00 0.00 41.36 6.13
578 586 4.918201 CCGAGGGAATGAGCCGGC 62.918 72.222 21.89 21.89 33.47 6.13
579 587 4.161295 CGAGGGAATGAGCCGGCA 62.161 66.667 31.54 9.64 0.00 5.69
580 588 2.514824 GAGGGAATGAGCCGGCAC 60.515 66.667 31.54 24.60 0.00 5.01
581 589 3.329542 GAGGGAATGAGCCGGCACA 62.330 63.158 28.80 28.80 0.00 4.57
582 590 2.124151 GGGAATGAGCCGGCACAT 60.124 61.111 30.56 30.56 0.00 3.21
583 591 1.754234 GGGAATGAGCCGGCACATT 60.754 57.895 40.55 40.55 39.30 2.71
584 592 0.465460 GGGAATGAGCCGGCACATTA 60.465 55.000 40.10 17.37 37.36 1.90
585 593 1.609208 GGAATGAGCCGGCACATTAT 58.391 50.000 40.10 26.75 37.36 1.28
586 594 1.956477 GGAATGAGCCGGCACATTATT 59.044 47.619 40.10 26.64 37.36 1.40
587 595 2.362077 GGAATGAGCCGGCACATTATTT 59.638 45.455 40.10 26.31 37.36 1.40
588 596 3.181476 GGAATGAGCCGGCACATTATTTT 60.181 43.478 40.10 25.98 37.36 1.82
589 597 2.937469 TGAGCCGGCACATTATTTTG 57.063 45.000 31.54 0.00 0.00 2.44
590 598 2.441410 TGAGCCGGCACATTATTTTGA 58.559 42.857 31.54 0.00 0.00 2.69
591 599 2.822561 TGAGCCGGCACATTATTTTGAA 59.177 40.909 31.54 0.00 0.00 2.69
592 600 3.256879 TGAGCCGGCACATTATTTTGAAA 59.743 39.130 31.54 0.00 0.00 2.69
593 601 4.081752 TGAGCCGGCACATTATTTTGAAAT 60.082 37.500 31.54 0.06 0.00 2.17
594 602 4.831107 AGCCGGCACATTATTTTGAAATT 58.169 34.783 31.54 0.00 0.00 1.82
595 603 5.244755 AGCCGGCACATTATTTTGAAATTT 58.755 33.333 31.54 0.00 0.00 1.82
596 604 5.704978 AGCCGGCACATTATTTTGAAATTTT 59.295 32.000 31.54 0.00 0.00 1.82
597 605 6.876257 AGCCGGCACATTATTTTGAAATTTTA 59.124 30.769 31.54 0.00 0.00 1.52
598 606 6.958752 GCCGGCACATTATTTTGAAATTTTAC 59.041 34.615 24.80 0.00 0.00 2.01
599 607 7.170114 CCGGCACATTATTTTGAAATTTTACG 58.830 34.615 0.00 0.00 0.00 3.18
600 608 7.062371 CCGGCACATTATTTTGAAATTTTACGA 59.938 33.333 0.00 0.00 0.00 3.43
601 609 8.428536 CGGCACATTATTTTGAAATTTTACGAA 58.571 29.630 0.00 0.00 0.00 3.85
602 610 9.739786 GGCACATTATTTTGAAATTTTACGAAG 57.260 29.630 0.00 0.00 0.00 3.79
603 611 9.249844 GCACATTATTTTGAAATTTTACGAAGC 57.750 29.630 0.00 0.00 0.00 3.86
604 612 9.739786 CACATTATTTTGAAATTTTACGAAGCC 57.260 29.630 0.00 0.00 0.00 4.35
605 613 8.643752 ACATTATTTTGAAATTTTACGAAGCCG 58.356 29.630 0.00 0.00 42.50 5.52
606 614 4.957832 TTTTGAAATTTTACGAAGCCGC 57.042 36.364 0.00 0.00 39.95 6.53
607 615 3.907894 TTGAAATTTTACGAAGCCGCT 57.092 38.095 0.00 0.00 39.95 5.52
608 616 3.196007 TGAAATTTTACGAAGCCGCTG 57.804 42.857 0.00 0.00 39.95 5.18
609 617 2.550606 TGAAATTTTACGAAGCCGCTGT 59.449 40.909 0.00 0.00 39.95 4.40
610 618 3.747010 TGAAATTTTACGAAGCCGCTGTA 59.253 39.130 0.00 0.00 39.95 2.74
611 619 4.142988 TGAAATTTTACGAAGCCGCTGTAG 60.143 41.667 0.00 0.00 39.95 2.74
612 620 2.728690 TTTTACGAAGCCGCTGTAGA 57.271 45.000 0.00 0.00 39.95 2.59
613 621 2.953466 TTTACGAAGCCGCTGTAGAT 57.047 45.000 0.00 0.00 39.95 1.98
614 622 2.203800 TTACGAAGCCGCTGTAGATG 57.796 50.000 0.00 0.00 39.95 2.90
615 623 1.100510 TACGAAGCCGCTGTAGATGT 58.899 50.000 0.00 0.00 39.95 3.06
616 624 0.179134 ACGAAGCCGCTGTAGATGTC 60.179 55.000 0.00 0.00 39.95 3.06
617 625 0.101399 CGAAGCCGCTGTAGATGTCT 59.899 55.000 0.00 0.00 0.00 3.41
618 626 1.846541 GAAGCCGCTGTAGATGTCTC 58.153 55.000 0.00 0.00 0.00 3.36
619 627 1.135139 GAAGCCGCTGTAGATGTCTCA 59.865 52.381 0.00 0.00 0.00 3.27
620 628 1.407936 AGCCGCTGTAGATGTCTCAT 58.592 50.000 0.00 0.00 0.00 2.90
621 629 2.587522 AGCCGCTGTAGATGTCTCATA 58.412 47.619 0.00 0.00 0.00 2.15
622 630 2.556189 AGCCGCTGTAGATGTCTCATAG 59.444 50.000 0.00 0.00 0.00 2.23
623 631 2.294791 GCCGCTGTAGATGTCTCATAGT 59.705 50.000 0.00 0.00 0.00 2.12
624 632 3.243569 GCCGCTGTAGATGTCTCATAGTT 60.244 47.826 0.00 0.00 0.00 2.24
625 633 4.023107 GCCGCTGTAGATGTCTCATAGTTA 60.023 45.833 0.00 0.00 0.00 2.24
626 634 5.507482 GCCGCTGTAGATGTCTCATAGTTAA 60.507 44.000 0.00 0.00 0.00 2.01
627 635 6.146216 CCGCTGTAGATGTCTCATAGTTAAG 58.854 44.000 0.00 0.00 0.00 1.85
628 636 6.146216 CGCTGTAGATGTCTCATAGTTAAGG 58.854 44.000 0.00 0.00 0.00 2.69
629 637 6.451393 GCTGTAGATGTCTCATAGTTAAGGG 58.549 44.000 0.00 0.00 0.00 3.95
630 638 6.517529 GCTGTAGATGTCTCATAGTTAAGGGG 60.518 46.154 0.00 0.00 0.00 4.79
631 639 6.679542 TGTAGATGTCTCATAGTTAAGGGGA 58.320 40.000 0.00 0.00 0.00 4.81
632 640 7.130099 TGTAGATGTCTCATAGTTAAGGGGAA 58.870 38.462 0.00 0.00 0.00 3.97
633 641 6.487299 AGATGTCTCATAGTTAAGGGGAAC 57.513 41.667 0.00 0.00 0.00 3.62
634 642 5.964477 AGATGTCTCATAGTTAAGGGGAACA 59.036 40.000 0.00 0.00 0.00 3.18
635 643 6.617371 AGATGTCTCATAGTTAAGGGGAACAT 59.383 38.462 0.00 0.00 0.00 2.71
636 644 6.636454 TGTCTCATAGTTAAGGGGAACATT 57.364 37.500 0.00 0.00 38.33 2.71
637 645 7.027874 TGTCTCATAGTTAAGGGGAACATTT 57.972 36.000 0.00 0.00 35.09 2.32
638 646 7.466804 TGTCTCATAGTTAAGGGGAACATTTT 58.533 34.615 0.00 0.00 35.09 1.82
639 647 7.610305 TGTCTCATAGTTAAGGGGAACATTTTC 59.390 37.037 0.00 0.00 35.09 2.29
640 648 7.829706 GTCTCATAGTTAAGGGGAACATTTTCT 59.170 37.037 0.00 0.00 35.09 2.52
641 649 8.047310 TCTCATAGTTAAGGGGAACATTTTCTC 58.953 37.037 0.00 0.00 35.09 2.87
650 658 4.505313 GGAACATTTTCTCCCACAGAAC 57.495 45.455 0.00 0.00 41.13 3.01
651 659 3.058224 GGAACATTTTCTCCCACAGAACG 60.058 47.826 0.00 0.00 41.13 3.95
652 660 1.880027 ACATTTTCTCCCACAGAACGC 59.120 47.619 0.00 0.00 41.13 4.84
653 661 1.135972 CATTTTCTCCCACAGAACGCG 60.136 52.381 3.53 3.53 41.13 6.01
654 662 0.179067 TTTTCTCCCACAGAACGCGT 60.179 50.000 5.58 5.58 41.13 6.01
655 663 0.675083 TTTCTCCCACAGAACGCGTA 59.325 50.000 14.46 0.00 41.13 4.42
656 664 0.892755 TTCTCCCACAGAACGCGTAT 59.107 50.000 14.46 0.26 36.08 3.06
657 665 0.454600 TCTCCCACAGAACGCGTATC 59.545 55.000 14.46 12.73 0.00 2.24
658 666 0.172578 CTCCCACAGAACGCGTATCA 59.827 55.000 14.46 0.00 0.00 2.15
659 667 0.821517 TCCCACAGAACGCGTATCAT 59.178 50.000 14.46 0.00 0.00 2.45
660 668 1.202371 TCCCACAGAACGCGTATCATC 60.202 52.381 14.46 6.32 0.00 2.92
661 669 0.846401 CCACAGAACGCGTATCATCG 59.154 55.000 14.46 5.61 0.00 3.84
662 670 1.533129 CCACAGAACGCGTATCATCGA 60.533 52.381 14.46 0.00 0.00 3.59
663 671 2.182014 CACAGAACGCGTATCATCGAA 58.818 47.619 14.46 0.00 0.00 3.71
664 672 2.596862 CACAGAACGCGTATCATCGAAA 59.403 45.455 14.46 0.00 0.00 3.46
665 673 3.060230 CACAGAACGCGTATCATCGAAAA 59.940 43.478 14.46 0.00 0.00 2.29
666 674 3.863424 ACAGAACGCGTATCATCGAAAAT 59.137 39.130 14.46 0.00 0.00 1.82
667 675 4.328983 ACAGAACGCGTATCATCGAAAATT 59.671 37.500 14.46 0.00 0.00 1.82
668 676 4.892880 CAGAACGCGTATCATCGAAAATTC 59.107 41.667 14.46 0.54 0.00 2.17
669 677 4.804139 AGAACGCGTATCATCGAAAATTCT 59.196 37.500 14.46 3.41 0.00 2.40
670 678 5.975344 AGAACGCGTATCATCGAAAATTCTA 59.025 36.000 14.46 0.00 0.00 2.10
671 679 6.474427 AGAACGCGTATCATCGAAAATTCTAA 59.526 34.615 14.46 0.00 0.00 2.10
672 680 6.578020 ACGCGTATCATCGAAAATTCTAAA 57.422 33.333 11.67 0.00 0.00 1.85
673 681 6.996106 ACGCGTATCATCGAAAATTCTAAAA 58.004 32.000 11.67 0.00 0.00 1.52
674 682 7.627340 ACGCGTATCATCGAAAATTCTAAAAT 58.373 30.769 11.67 0.00 0.00 1.82
675 683 8.757789 ACGCGTATCATCGAAAATTCTAAAATA 58.242 29.630 11.67 0.00 0.00 1.40
676 684 9.575702 CGCGTATCATCGAAAATTCTAAAATAA 57.424 29.630 0.00 0.00 0.00 1.40
700 708 8.647143 AAATTCAAAACAAATACAGACACAGG 57.353 30.769 0.00 0.00 0.00 4.00
701 709 7.581213 ATTCAAAACAAATACAGACACAGGA 57.419 32.000 0.00 0.00 0.00 3.86
702 710 7.397892 TTCAAAACAAATACAGACACAGGAA 57.602 32.000 0.00 0.00 0.00 3.36
703 711 6.791303 TCAAAACAAATACAGACACAGGAAC 58.209 36.000 0.00 0.00 0.00 3.62
704 712 6.601613 TCAAAACAAATACAGACACAGGAACT 59.398 34.615 0.00 0.00 43.88 3.01
705 713 7.122055 TCAAAACAAATACAGACACAGGAACTT 59.878 33.333 0.00 0.00 34.60 2.66
706 714 6.377327 AACAAATACAGACACAGGAACTTG 57.623 37.500 0.00 0.00 34.60 3.16
707 715 5.680619 ACAAATACAGACACAGGAACTTGA 58.319 37.500 0.00 0.00 34.60 3.02
708 716 6.119536 ACAAATACAGACACAGGAACTTGAA 58.880 36.000 0.00 0.00 34.60 2.69
709 717 6.772716 ACAAATACAGACACAGGAACTTGAAT 59.227 34.615 0.00 0.00 34.60 2.57
710 718 6.808008 AATACAGACACAGGAACTTGAATG 57.192 37.500 0.00 0.00 34.60 2.67
711 719 3.480470 ACAGACACAGGAACTTGAATGG 58.520 45.455 0.00 0.00 34.60 3.16
712 720 3.136443 ACAGACACAGGAACTTGAATGGA 59.864 43.478 0.00 0.00 34.60 3.41
713 721 3.499918 CAGACACAGGAACTTGAATGGAC 59.500 47.826 0.00 0.00 34.60 4.02
714 722 3.136443 AGACACAGGAACTTGAATGGACA 59.864 43.478 0.00 0.00 34.60 4.02
715 723 3.480470 ACACAGGAACTTGAATGGACAG 58.520 45.455 0.00 0.00 34.60 3.51
716 724 2.816087 CACAGGAACTTGAATGGACAGG 59.184 50.000 0.00 0.00 34.60 4.00
717 725 2.224867 ACAGGAACTTGAATGGACAGGG 60.225 50.000 0.00 0.00 34.60 4.45
718 726 1.355720 AGGAACTTGAATGGACAGGGG 59.644 52.381 0.00 0.00 27.25 4.79
719 727 1.354368 GGAACTTGAATGGACAGGGGA 59.646 52.381 0.00 0.00 0.00 4.81
720 728 2.024941 GGAACTTGAATGGACAGGGGAT 60.025 50.000 0.00 0.00 0.00 3.85
721 729 3.202151 GGAACTTGAATGGACAGGGGATA 59.798 47.826 0.00 0.00 0.00 2.59
722 730 3.933861 ACTTGAATGGACAGGGGATAC 57.066 47.619 0.00 0.00 0.00 2.24
743 751 3.844211 ACCACTGCCTTCTAACCATCTAA 59.156 43.478 0.00 0.00 0.00 2.10
747 755 4.080863 ACTGCCTTCTAACCATCTAACCAG 60.081 45.833 0.00 0.00 0.00 4.00
749 757 4.721776 TGCCTTCTAACCATCTAACCAGAT 59.278 41.667 0.00 0.00 42.52 2.90
760 768 3.617284 TCTAACCAGATGTCGCAGTAGA 58.383 45.455 0.00 0.00 0.00 2.59
763 771 3.678056 ACCAGATGTCGCAGTAGAAAA 57.322 42.857 0.00 0.00 0.00 2.29
764 772 3.326747 ACCAGATGTCGCAGTAGAAAAC 58.673 45.455 0.00 0.00 0.00 2.43
766 774 1.993370 AGATGTCGCAGTAGAAAACGC 59.007 47.619 0.00 0.00 0.00 4.84
768 776 0.856641 TGTCGCAGTAGAAAACGCAC 59.143 50.000 0.00 0.00 0.00 5.34
769 777 1.137513 GTCGCAGTAGAAAACGCACT 58.862 50.000 0.00 0.00 0.00 4.40
774 789 2.092838 GCAGTAGAAAACGCACTAGCTG 59.907 50.000 0.00 0.00 39.10 4.24
826 841 3.125316 GCAATGGCGATGTTTGCATTAT 58.875 40.909 1.22 0.00 43.95 1.28
828 843 4.361420 CAATGGCGATGTTTGCATTATCA 58.639 39.130 0.00 0.00 35.07 2.15
829 844 3.419264 TGGCGATGTTTGCATTATCAC 57.581 42.857 0.00 0.00 35.07 3.06
830 845 2.098934 TGGCGATGTTTGCATTATCACC 59.901 45.455 0.00 0.00 35.07 4.02
831 846 2.543653 GGCGATGTTTGCATTATCACCC 60.544 50.000 0.00 0.00 35.07 4.61
832 847 2.358898 GCGATGTTTGCATTATCACCCT 59.641 45.455 0.00 0.00 35.07 4.34
833 848 3.181487 GCGATGTTTGCATTATCACCCTT 60.181 43.478 0.00 0.00 35.07 3.95
834 849 4.353737 CGATGTTTGCATTATCACCCTTG 58.646 43.478 0.00 0.00 35.07 3.61
835 850 4.685924 GATGTTTGCATTATCACCCTTGG 58.314 43.478 0.00 0.00 35.07 3.61
836 851 2.233431 TGTTTGCATTATCACCCTTGGC 59.767 45.455 0.00 0.00 0.00 4.52
837 852 2.497273 GTTTGCATTATCACCCTTGGCT 59.503 45.455 0.00 0.00 0.00 4.75
838 853 1.766494 TGCATTATCACCCTTGGCTG 58.234 50.000 0.00 0.00 0.00 4.85
839 854 1.284491 TGCATTATCACCCTTGGCTGA 59.716 47.619 0.00 0.00 0.00 4.26
840 855 2.291475 TGCATTATCACCCTTGGCTGAA 60.291 45.455 0.00 0.00 0.00 3.02
841 856 2.360165 GCATTATCACCCTTGGCTGAAG 59.640 50.000 0.00 0.00 0.00 3.02
842 857 2.128771 TTATCACCCTTGGCTGAAGC 57.871 50.000 0.00 0.00 41.14 3.86
843 858 1.289160 TATCACCCTTGGCTGAAGCT 58.711 50.000 1.74 0.00 41.70 3.74
844 859 1.289160 ATCACCCTTGGCTGAAGCTA 58.711 50.000 1.74 0.00 41.70 3.32
845 860 1.064003 TCACCCTTGGCTGAAGCTAA 58.936 50.000 1.74 1.33 41.70 3.09
846 861 1.423541 TCACCCTTGGCTGAAGCTAAA 59.576 47.619 2.62 0.00 40.95 1.85
847 862 2.158534 TCACCCTTGGCTGAAGCTAAAA 60.159 45.455 2.62 0.00 40.95 1.52
848 863 2.229784 CACCCTTGGCTGAAGCTAAAAG 59.770 50.000 2.62 4.73 40.95 2.27
849 864 2.108250 ACCCTTGGCTGAAGCTAAAAGA 59.892 45.455 2.62 0.00 40.95 2.52
850 865 3.157087 CCCTTGGCTGAAGCTAAAAGAA 58.843 45.455 2.62 0.00 40.95 2.52
851 866 3.766051 CCCTTGGCTGAAGCTAAAAGAAT 59.234 43.478 2.62 0.00 40.95 2.40
852 867 4.949856 CCCTTGGCTGAAGCTAAAAGAATA 59.050 41.667 2.62 0.00 40.95 1.75
853 868 5.595952 CCCTTGGCTGAAGCTAAAAGAATAT 59.404 40.000 2.62 0.00 40.95 1.28
854 869 6.238869 CCCTTGGCTGAAGCTAAAAGAATATC 60.239 42.308 2.62 0.00 40.95 1.63
855 870 6.545298 CCTTGGCTGAAGCTAAAAGAATATCT 59.455 38.462 2.62 0.00 40.95 1.98
856 871 7.255070 CCTTGGCTGAAGCTAAAAGAATATCTC 60.255 40.741 2.62 0.00 40.95 2.75
857 872 6.653020 TGGCTGAAGCTAAAAGAATATCTCA 58.347 36.000 1.74 0.00 41.70 3.27
858 873 7.112122 TGGCTGAAGCTAAAAGAATATCTCAA 58.888 34.615 1.74 0.00 41.70 3.02
859 874 7.281774 TGGCTGAAGCTAAAAGAATATCTCAAG 59.718 37.037 1.74 0.00 41.70 3.02
860 875 7.497249 GGCTGAAGCTAAAAGAATATCTCAAGA 59.503 37.037 1.74 0.00 41.70 3.02
861 876 9.054922 GCTGAAGCTAAAAGAATATCTCAAGAT 57.945 33.333 0.00 0.00 38.21 2.40
866 881 9.777297 AGCTAAAAGAATATCTCAAGATTCCTC 57.223 33.333 0.00 0.00 34.32 3.71
867 882 8.998377 GCTAAAAGAATATCTCAAGATTCCTCC 58.002 37.037 0.00 0.00 34.32 4.30
870 885 9.987726 AAAAGAATATCTCAAGATTCCTCCTTT 57.012 29.630 0.00 0.00 34.32 3.11
871 886 9.987726 AAAGAATATCTCAAGATTCCTCCTTTT 57.012 29.630 0.00 0.00 34.32 2.27
872 887 9.987726 AAGAATATCTCAAGATTCCTCCTTTTT 57.012 29.630 0.00 0.00 34.32 1.94
998 3715 1.667722 CAAGAACAAGCAAGCCCCC 59.332 57.895 0.00 0.00 0.00 5.40
1018 3735 3.582242 ATGGTCAACATGGCGGCCA 62.582 57.895 26.11 26.11 38.70 5.36
1639 4399 3.138098 TCATGGCTGGCAGGTATGATTTA 59.862 43.478 17.64 0.00 0.00 1.40
1645 4405 4.687219 GCTGGCAGGTATGATTTACTCCTT 60.687 45.833 17.64 0.00 0.00 3.36
1648 4408 4.058817 GCAGGTATGATTTACTCCTTCGG 58.941 47.826 0.00 0.00 0.00 4.30
1667 4436 3.940852 TCGGCGTCTTAGTAAGTCACATA 59.059 43.478 6.85 0.00 0.00 2.29
1693 4462 3.704566 AGTTTGATAGCGTGTCTGGGATA 59.295 43.478 0.00 0.00 0.00 2.59
1698 4467 0.541392 AGCGTGTCTGGGATATTGCA 59.459 50.000 0.00 0.00 0.00 4.08
1700 4469 1.299541 CGTGTCTGGGATATTGCACC 58.700 55.000 0.00 0.00 0.00 5.01
1736 4505 9.337091 CGTTTAACGGTAATGATTTCATCTTTT 57.663 29.630 9.88 0.00 38.08 2.27
1743 4512 7.542025 GGTAATGATTTCATCTTTTGTGAGCT 58.458 34.615 0.00 0.00 35.10 4.09
1796 4565 4.142071 GCTATGGAGCCATATCAAGATCGA 60.142 45.833 9.52 0.00 43.49 3.59
1836 4609 8.172484 CCGTGAATTATTATTTTTCGTGACTGA 58.828 33.333 0.00 0.00 0.00 3.41
1854 4627 0.537188 GATGTGGTGATGTCGGAGGT 59.463 55.000 0.00 0.00 0.00 3.85
1865 4638 2.181021 CGGAGGTAGGTGACACGC 59.819 66.667 0.00 0.00 0.00 5.34
1871 4644 1.300388 GTAGGTGACACGCGTTGGT 60.300 57.895 10.22 5.15 0.00 3.67
1872 4645 0.039256 GTAGGTGACACGCGTTGGTA 60.039 55.000 10.22 0.00 0.00 3.25
1873 4646 0.672889 TAGGTGACACGCGTTGGTAA 59.327 50.000 10.22 0.00 0.00 2.85
1874 4647 0.599204 AGGTGACACGCGTTGGTAAG 60.599 55.000 10.22 0.00 0.00 2.34
1875 4648 1.203313 GTGACACGCGTTGGTAAGC 59.797 57.895 10.22 0.00 0.00 3.09
1950 4729 6.935741 TTTGTGCAAAGACTAGTGTTATGT 57.064 33.333 5.58 0.00 0.00 2.29
1973 4752 6.206634 TGTTGTCTTTTCAGTTTTGTCAGACT 59.793 34.615 1.31 0.00 32.13 3.24
1975 4754 5.030936 GTCTTTTCAGTTTTGTCAGACTGC 58.969 41.667 1.31 0.00 42.27 4.40
1982 4761 3.871594 AGTTTTGTCAGACTGCTGTGTAC 59.128 43.478 0.00 0.00 42.84 2.90
2067 4846 3.370209 GGTTAAGGTGGACAGTGGTATCC 60.370 52.174 0.00 0.00 35.37 2.59
2071 4850 0.107654 GTGGACAGTGGTATCCCAGC 60.108 60.000 0.00 0.00 42.94 4.85
2072 4851 0.546507 TGGACAGTGGTATCCCAGCA 60.547 55.000 0.00 0.00 42.94 4.41
2073 4852 0.839946 GGACAGTGGTATCCCAGCAT 59.160 55.000 0.00 0.00 42.94 3.79
2074 4853 1.212935 GGACAGTGGTATCCCAGCATT 59.787 52.381 0.00 0.00 42.94 3.56
2081 4862 2.441750 TGGTATCCCAGCATTAGGGTTC 59.558 50.000 0.00 0.00 46.82 3.62
2086 4867 4.059773 TCCCAGCATTAGGGTTCAAATT 57.940 40.909 0.00 0.00 46.82 1.82
2088 4869 4.026052 CCCAGCATTAGGGTTCAAATTCT 58.974 43.478 0.00 0.00 41.61 2.40
2099 4880 4.479619 GGTTCAAATTCTGATGCTCACAC 58.520 43.478 0.00 0.00 32.78 3.82
2109 4890 1.808945 GATGCTCACACTTGTTCCTGG 59.191 52.381 0.00 0.00 0.00 4.45
2118 4899 7.214467 TCACACTTGTTCCTGGATTTATTTC 57.786 36.000 0.00 0.00 0.00 2.17
2134 4915 5.975693 TTATTTCAGGATTTCCAGCGTTT 57.024 34.783 0.00 0.00 38.89 3.60
2138 4919 1.394917 CAGGATTTCCAGCGTTTCTCG 59.605 52.381 0.00 0.00 39.65 4.04
2147 4928 0.387929 AGCGTTTCTCGTTCAGTGGA 59.612 50.000 0.00 0.00 42.13 4.02
2149 4930 1.595794 GCGTTTCTCGTTCAGTGGAAA 59.404 47.619 0.00 0.00 42.13 3.13
2150 4931 2.031191 GCGTTTCTCGTTCAGTGGAAAA 59.969 45.455 0.00 0.00 42.13 2.29
2151 4932 3.844943 GCGTTTCTCGTTCAGTGGAAAAG 60.845 47.826 0.00 0.00 42.13 2.27
2152 4933 3.554324 CGTTTCTCGTTCAGTGGAAAAGA 59.446 43.478 0.00 0.00 34.13 2.52
2153 4934 4.211374 CGTTTCTCGTTCAGTGGAAAAGAT 59.789 41.667 0.00 0.00 34.13 2.40
2154 4935 5.444122 GTTTCTCGTTCAGTGGAAAAGATG 58.556 41.667 0.00 0.00 34.13 2.90
2155 4936 4.336889 TCTCGTTCAGTGGAAAAGATGT 57.663 40.909 0.00 0.00 34.13 3.06
2180 4962 4.768448 TCCATCAACTACGAGGTGTCTTTA 59.232 41.667 0.00 0.00 33.77 1.85
2181 4963 5.244402 TCCATCAACTACGAGGTGTCTTTAA 59.756 40.000 0.00 0.00 33.77 1.52
2182 4964 5.347907 CCATCAACTACGAGGTGTCTTTAAC 59.652 44.000 0.00 0.00 33.77 2.01
2185 4967 5.048504 TCAACTACGAGGTGTCTTTAACGAT 60.049 40.000 0.00 0.00 33.77 3.73
2187 4969 5.397326 ACTACGAGGTGTCTTTAACGATTC 58.603 41.667 0.00 0.00 0.00 2.52
2203 4993 3.527533 CGATTCCGTCAATCCCAAGTTA 58.472 45.455 0.08 0.00 38.17 2.24
2217 5007 9.880157 CAATCCCAAGTTAAAATGAAATGAGAT 57.120 29.630 0.00 0.00 0.00 2.75
2275 5066 6.765989 ACAAAGCATGTACTACTTTTGACTGA 59.234 34.615 15.38 0.00 41.63 3.41
2281 5072 7.095229 GCATGTACTACTTTTGACTGATGTTCA 60.095 37.037 0.00 0.00 0.00 3.18
2282 5073 8.939929 CATGTACTACTTTTGACTGATGTTCAT 58.060 33.333 0.00 0.00 0.00 2.57
2287 5078 9.950496 ACTACTTTTGACTGATGTTCATCTTAT 57.050 29.630 12.94 0.44 0.00 1.73
2305 5096 8.043710 TCATCTTATGAAGAGGAAGGAAGAAAC 58.956 37.037 1.32 0.00 44.42 2.78
2320 5113 5.133941 GGAAGAAACTTTCCTCTTTCACCT 58.866 41.667 0.00 0.00 42.73 4.00
2346 5139 4.143333 CCACACCCTAGCCGACGG 62.143 72.222 10.29 10.29 0.00 4.79
2372 5165 1.306226 CCCTCTTCCTTCCCCTCGT 60.306 63.158 0.00 0.00 0.00 4.18
2376 5169 2.283676 TTCCTTCCCCTCGTCGCT 60.284 61.111 0.00 0.00 0.00 4.93
2378 5171 3.382832 CCTTCCCCTCGTCGCTGT 61.383 66.667 0.00 0.00 0.00 4.40
2407 5200 4.402192 CGATAGGTGCTCGTGGTG 57.598 61.111 0.00 0.00 0.00 4.17
2422 5215 3.003763 GTGGCGGGGTCCTCTCTT 61.004 66.667 0.00 0.00 0.00 2.85
2429 5222 0.252742 GGGGTCCTCTCTTTCCCTGA 60.253 60.000 0.00 0.00 39.80 3.86
2430 5223 0.906066 GGGTCCTCTCTTTCCCTGAC 59.094 60.000 0.00 0.00 37.18 3.51
2438 5231 0.761323 TCTTTCCCTGACGTGGTGGA 60.761 55.000 0.00 0.00 0.00 4.02
2439 5232 0.107831 CTTTCCCTGACGTGGTGGAA 59.892 55.000 0.00 0.00 35.16 3.53
2449 5242 2.040544 GTGGTGGAACTCGGCATGG 61.041 63.158 0.00 0.00 36.74 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.507162 ATGACAACAGGAACATCCACA 57.493 42.857 0.00 0.00 39.61 4.17
1 2 3.941483 CCTATGACAACAGGAACATCCAC 59.059 47.826 0.00 0.00 39.61 4.02
2 3 3.054434 CCCTATGACAACAGGAACATCCA 60.054 47.826 7.82 0.00 39.61 3.41
39 40 5.938125 ACTTTACAAATAGCCGACATCACTT 59.062 36.000 0.00 0.00 0.00 3.16
43 44 9.783256 ATTAAAACTTTACAAATAGCCGACATC 57.217 29.630 0.00 0.00 0.00 3.06
64 65 9.906660 GTGTTGTTGAAGGATCACAATATTAAA 57.093 29.630 0.00 0.00 34.61 1.52
67 68 6.071391 GGGTGTTGTTGAAGGATCACAATATT 60.071 38.462 0.00 0.00 34.61 1.28
93 94 5.107824 CCATGAGAGACAAGAGTACACATG 58.892 45.833 0.00 0.00 35.39 3.21
107 108 2.557555 AGGACCATCACCATGAGAGA 57.442 50.000 0.00 0.00 30.57 3.10
113 114 3.814504 AGACAAAAGGACCATCACCAT 57.185 42.857 0.00 0.00 0.00 3.55
134 135 3.583086 TGAGAAGGCAAGGCTTAACTACT 59.417 43.478 8.98 1.79 0.00 2.57
135 136 3.939066 TGAGAAGGCAAGGCTTAACTAC 58.061 45.455 8.98 0.00 0.00 2.73
142 143 0.394080 GCTCATGAGAAGGCAAGGCT 60.394 55.000 27.04 0.00 0.00 4.58
144 145 0.392193 ACGCTCATGAGAAGGCAAGG 60.392 55.000 27.04 6.44 0.00 3.61
145 146 1.005340 GACGCTCATGAGAAGGCAAG 58.995 55.000 27.04 9.57 0.00 4.01
146 147 0.610174 AGACGCTCATGAGAAGGCAA 59.390 50.000 27.04 0.00 0.00 4.52
153 154 5.334414 GGCCAAAAATATAGACGCTCATGAG 60.334 44.000 18.84 18.84 0.00 2.90
156 157 4.718961 AGGCCAAAAATATAGACGCTCAT 58.281 39.130 5.01 0.00 0.00 2.90
161 162 7.083875 TGAAAGAAGGCCAAAAATATAGACG 57.916 36.000 5.01 0.00 0.00 4.18
172 173 8.522830 CAAGTAATTAGAATGAAAGAAGGCCAA 58.477 33.333 5.01 0.00 0.00 4.52
186 187 5.163933 CCAAACTACGCGCAAGTAATTAGAA 60.164 40.000 14.30 0.00 41.68 2.10
187 188 4.327898 CCAAACTACGCGCAAGTAATTAGA 59.672 41.667 14.30 0.00 41.68 2.10
190 191 2.809696 ACCAAACTACGCGCAAGTAATT 59.190 40.909 14.30 4.56 41.68 1.40
199 200 2.478547 AAACCAAACCAAACTACGCG 57.521 45.000 3.53 3.53 0.00 6.01
205 206 3.513680 ACGAGGAAAACCAAACCAAAC 57.486 42.857 0.00 0.00 0.00 2.93
224 225 2.582446 AACAAATCGACGCCGTTTAC 57.418 45.000 0.00 0.00 37.05 2.01
232 233 6.739408 GTCGAAAATCTTAACAAATCGACG 57.261 37.500 9.25 0.00 45.13 5.12
235 236 5.019498 CCGGTCGAAAATCTTAACAAATCG 58.981 41.667 0.00 0.00 0.00 3.34
288 290 7.616542 TCCCATCAGAATTTGATCTCATTCAAA 59.383 33.333 15.63 2.46 44.76 2.69
300 302 3.057315 ACAGCGTTTCCCATCAGAATTTG 60.057 43.478 0.00 0.00 0.00 2.32
308 310 2.872858 GGAATCTACAGCGTTTCCCATC 59.127 50.000 0.00 0.00 33.08 3.51
409 416 1.865865 ACGTGACACGAAGCAATTCT 58.134 45.000 33.12 5.54 46.05 2.40
419 426 1.779061 GTGCCACATACGTGACACG 59.221 57.895 25.72 25.72 44.87 4.49
423 430 3.878160 TGATAAGTGCCACATACGTGA 57.122 42.857 0.00 0.00 46.80 4.35
427 434 3.990092 TCGGATGATAAGTGCCACATAC 58.010 45.455 0.00 0.00 0.00 2.39
428 435 4.890158 ATCGGATGATAAGTGCCACATA 57.110 40.909 0.00 0.00 31.44 2.29
467 474 0.865769 CTTGTGCCTGTACCGTGTTC 59.134 55.000 0.00 0.00 0.00 3.18
473 481 0.672401 TAAGCGCTTGTGCCTGTACC 60.672 55.000 32.23 0.00 35.36 3.34
477 485 3.059597 GTGTATATAAGCGCTTGTGCCTG 60.060 47.826 32.23 0.00 35.36 4.85
480 488 2.659291 GCGTGTATATAAGCGCTTGTGC 60.659 50.000 32.23 19.27 45.48 4.57
487 495 6.964934 TGAGTATATGTGCGTGTATATAAGCG 59.035 38.462 3.24 3.63 0.00 4.68
490 498 9.836076 GAAGTGAGTATATGTGCGTGTATATAA 57.164 33.333 0.00 0.00 0.00 0.98
491 499 9.227777 AGAAGTGAGTATATGTGCGTGTATATA 57.772 33.333 0.00 0.00 0.00 0.86
493 501 7.506328 AGAAGTGAGTATATGTGCGTGTATA 57.494 36.000 0.00 0.00 0.00 1.47
501 509 6.086896 CGCGTTCATAGAAGTGAGTATATGTG 59.913 42.308 0.00 0.00 0.00 3.21
502 510 6.143496 CGCGTTCATAGAAGTGAGTATATGT 58.857 40.000 0.00 0.00 0.00 2.29
507 515 2.790123 CGCGCGTTCATAGAAGTGAGTA 60.790 50.000 24.19 0.00 0.00 2.59
513 521 1.013323 GTGCGCGCGTTCATAGAAG 60.013 57.895 32.35 0.00 0.00 2.85
515 523 2.126267 TGTGCGCGCGTTCATAGA 60.126 55.556 32.35 2.50 0.00 1.98
528 536 0.387622 GGCATGATGTGTGTGTGTGC 60.388 55.000 0.00 0.00 0.00 4.57
529 537 0.241749 GGGCATGATGTGTGTGTGTG 59.758 55.000 0.00 0.00 0.00 3.82
532 540 0.991146 TAGGGGCATGATGTGTGTGT 59.009 50.000 0.00 0.00 0.00 3.72
536 544 1.202855 GCTCATAGGGGCATGATGTGT 60.203 52.381 0.00 0.00 34.50 3.72
538 546 1.142936 TGCTCATAGGGGCATGATGT 58.857 50.000 0.00 0.00 34.50 3.06
540 548 1.142936 TGTGCTCATAGGGGCATGAT 58.857 50.000 4.70 0.00 40.66 2.45
541 549 1.072806 GATGTGCTCATAGGGGCATGA 59.927 52.381 4.70 0.00 40.66 3.07
543 551 0.403271 GGATGTGCTCATAGGGGCAT 59.597 55.000 4.70 0.00 40.66 4.40
544 552 1.839191 GGATGTGCTCATAGGGGCA 59.161 57.895 0.00 0.00 34.06 5.36
545 553 1.302033 CGGATGTGCTCATAGGGGC 60.302 63.158 0.32 0.00 34.06 5.80
546 554 0.319728 CTCGGATGTGCTCATAGGGG 59.680 60.000 0.32 0.00 34.06 4.79
547 555 0.319728 CCTCGGATGTGCTCATAGGG 59.680 60.000 0.32 0.00 34.06 3.53
548 556 0.319728 CCCTCGGATGTGCTCATAGG 59.680 60.000 0.32 5.27 34.06 2.57
549 557 1.332195 TCCCTCGGATGTGCTCATAG 58.668 55.000 0.32 0.00 34.06 2.23
550 558 1.788229 TTCCCTCGGATGTGCTCATA 58.212 50.000 0.32 0.00 34.06 2.15
551 559 1.135094 ATTCCCTCGGATGTGCTCAT 58.865 50.000 0.00 0.00 36.95 2.90
552 560 0.178767 CATTCCCTCGGATGTGCTCA 59.821 55.000 0.00 0.00 0.00 4.26
553 561 0.465705 TCATTCCCTCGGATGTGCTC 59.534 55.000 0.00 0.00 0.00 4.26
554 562 0.467384 CTCATTCCCTCGGATGTGCT 59.533 55.000 0.00 0.00 0.00 4.40
555 563 1.162800 GCTCATTCCCTCGGATGTGC 61.163 60.000 0.00 0.00 0.00 4.57
556 564 0.533755 GGCTCATTCCCTCGGATGTG 60.534 60.000 0.00 0.00 0.00 3.21
557 565 1.832912 GGCTCATTCCCTCGGATGT 59.167 57.895 0.00 0.00 0.00 3.06
558 566 1.301244 CGGCTCATTCCCTCGGATG 60.301 63.158 0.00 0.00 0.00 3.51
559 567 2.511452 CCGGCTCATTCCCTCGGAT 61.511 63.158 0.00 0.00 42.94 4.18
560 568 3.154473 CCGGCTCATTCCCTCGGA 61.154 66.667 0.00 0.00 42.94 4.55
561 569 4.918201 GCCGGCTCATTCCCTCGG 62.918 72.222 22.15 0.00 43.13 4.63
562 570 4.161295 TGCCGGCTCATTCCCTCG 62.161 66.667 29.70 0.00 0.00 4.63
563 571 2.514824 GTGCCGGCTCATTCCCTC 60.515 66.667 29.70 2.95 0.00 4.30
564 572 2.215451 AATGTGCCGGCTCATTCCCT 62.215 55.000 38.15 24.08 35.94 4.20
565 573 0.465460 TAATGTGCCGGCTCATTCCC 60.465 55.000 43.49 19.03 39.71 3.97
566 574 1.609208 ATAATGTGCCGGCTCATTCC 58.391 50.000 43.49 20.55 39.71 3.01
567 575 3.715628 AAATAATGTGCCGGCTCATTC 57.284 42.857 43.49 23.46 39.71 2.67
568 576 3.446873 TCAAAATAATGTGCCGGCTCATT 59.553 39.130 41.78 41.78 41.25 2.57
569 577 3.023119 TCAAAATAATGTGCCGGCTCAT 58.977 40.909 32.67 32.67 0.00 2.90
570 578 2.441410 TCAAAATAATGTGCCGGCTCA 58.559 42.857 31.27 31.27 0.00 4.26
571 579 3.502191 TTCAAAATAATGTGCCGGCTC 57.498 42.857 29.70 25.38 0.00 4.70
572 580 3.951775 TTTCAAAATAATGTGCCGGCT 57.048 38.095 29.70 9.99 0.00 5.52
573 581 5.544136 AAATTTCAAAATAATGTGCCGGC 57.456 34.783 22.73 22.73 0.00 6.13
574 582 7.062371 TCGTAAAATTTCAAAATAATGTGCCGG 59.938 33.333 0.00 0.00 0.00 6.13
575 583 7.943952 TCGTAAAATTTCAAAATAATGTGCCG 58.056 30.769 0.00 0.00 0.00 5.69
576 584 9.739786 CTTCGTAAAATTTCAAAATAATGTGCC 57.260 29.630 0.00 0.00 0.00 5.01
577 585 9.249844 GCTTCGTAAAATTTCAAAATAATGTGC 57.750 29.630 0.00 0.00 0.00 4.57
578 586 9.739786 GGCTTCGTAAAATTTCAAAATAATGTG 57.260 29.630 0.00 0.00 0.00 3.21
579 587 8.643752 CGGCTTCGTAAAATTTCAAAATAATGT 58.356 29.630 0.00 0.00 0.00 2.71
580 588 7.630606 GCGGCTTCGTAAAATTTCAAAATAATG 59.369 33.333 0.00 0.00 36.07 1.90
581 589 7.544217 AGCGGCTTCGTAAAATTTCAAAATAAT 59.456 29.630 0.00 0.00 36.07 1.28
582 590 6.864165 AGCGGCTTCGTAAAATTTCAAAATAA 59.136 30.769 0.00 0.00 36.07 1.40
583 591 6.306837 CAGCGGCTTCGTAAAATTTCAAAATA 59.693 34.615 0.00 0.00 36.07 1.40
584 592 5.118510 CAGCGGCTTCGTAAAATTTCAAAAT 59.881 36.000 0.00 0.00 36.07 1.82
585 593 4.442733 CAGCGGCTTCGTAAAATTTCAAAA 59.557 37.500 0.00 0.00 36.07 2.44
586 594 3.978217 CAGCGGCTTCGTAAAATTTCAAA 59.022 39.130 0.00 0.00 36.07 2.69
587 595 3.003897 ACAGCGGCTTCGTAAAATTTCAA 59.996 39.130 0.00 0.00 36.07 2.69
588 596 2.550606 ACAGCGGCTTCGTAAAATTTCA 59.449 40.909 0.00 0.00 36.07 2.69
589 597 3.197434 ACAGCGGCTTCGTAAAATTTC 57.803 42.857 0.00 0.00 36.07 2.17
590 598 3.998341 TCTACAGCGGCTTCGTAAAATTT 59.002 39.130 0.00 0.00 36.07 1.82
591 599 3.592059 TCTACAGCGGCTTCGTAAAATT 58.408 40.909 0.00 0.00 36.07 1.82
592 600 3.241067 TCTACAGCGGCTTCGTAAAAT 57.759 42.857 0.00 0.00 36.07 1.82
593 601 2.728690 TCTACAGCGGCTTCGTAAAA 57.271 45.000 0.00 0.00 36.07 1.52
594 602 2.094390 ACATCTACAGCGGCTTCGTAAA 60.094 45.455 0.00 0.00 36.07 2.01
595 603 1.475280 ACATCTACAGCGGCTTCGTAA 59.525 47.619 0.00 0.00 36.07 3.18
596 604 1.065102 GACATCTACAGCGGCTTCGTA 59.935 52.381 0.00 0.00 36.07 3.43
597 605 0.179134 GACATCTACAGCGGCTTCGT 60.179 55.000 0.00 0.00 36.07 3.85
598 606 0.101399 AGACATCTACAGCGGCTTCG 59.899 55.000 0.00 0.00 0.00 3.79
599 607 1.135139 TGAGACATCTACAGCGGCTTC 59.865 52.381 0.00 0.00 0.00 3.86
600 608 1.186200 TGAGACATCTACAGCGGCTT 58.814 50.000 0.00 0.00 0.00 4.35
601 609 1.407936 ATGAGACATCTACAGCGGCT 58.592 50.000 0.00 0.00 0.00 5.52
602 610 2.294791 ACTATGAGACATCTACAGCGGC 59.705 50.000 0.00 0.00 0.00 6.53
603 611 4.576216 AACTATGAGACATCTACAGCGG 57.424 45.455 0.00 0.00 0.00 5.52
604 612 6.146216 CCTTAACTATGAGACATCTACAGCG 58.854 44.000 0.00 0.00 0.00 5.18
605 613 6.451393 CCCTTAACTATGAGACATCTACAGC 58.549 44.000 0.00 0.00 0.00 4.40
606 614 6.778069 TCCCCTTAACTATGAGACATCTACAG 59.222 42.308 0.00 0.00 0.00 2.74
607 615 6.679542 TCCCCTTAACTATGAGACATCTACA 58.320 40.000 0.00 0.00 0.00 2.74
608 616 7.069578 TGTTCCCCTTAACTATGAGACATCTAC 59.930 40.741 0.00 0.00 0.00 2.59
609 617 7.130099 TGTTCCCCTTAACTATGAGACATCTA 58.870 38.462 0.00 0.00 0.00 1.98
610 618 5.964477 TGTTCCCCTTAACTATGAGACATCT 59.036 40.000 0.00 0.00 0.00 2.90
611 619 6.235231 TGTTCCCCTTAACTATGAGACATC 57.765 41.667 0.00 0.00 0.00 3.06
612 620 6.831664 ATGTTCCCCTTAACTATGAGACAT 57.168 37.500 0.00 0.00 0.00 3.06
613 621 6.636454 AATGTTCCCCTTAACTATGAGACA 57.364 37.500 0.00 0.00 0.00 3.41
614 622 7.829706 AGAAAATGTTCCCCTTAACTATGAGAC 59.170 37.037 0.00 0.00 33.92 3.36
615 623 7.928873 AGAAAATGTTCCCCTTAACTATGAGA 58.071 34.615 0.00 0.00 33.92 3.27
616 624 7.283354 GGAGAAAATGTTCCCCTTAACTATGAG 59.717 40.741 0.00 0.00 33.92 2.90
617 625 7.116736 GGAGAAAATGTTCCCCTTAACTATGA 58.883 38.462 0.00 0.00 33.92 2.15
618 626 6.321435 GGGAGAAAATGTTCCCCTTAACTATG 59.679 42.308 12.66 0.00 46.15 2.23
619 627 6.432581 GGGAGAAAATGTTCCCCTTAACTAT 58.567 40.000 12.66 0.00 46.15 2.12
620 628 5.823312 GGGAGAAAATGTTCCCCTTAACTA 58.177 41.667 12.66 0.00 46.15 2.24
621 629 4.673968 GGGAGAAAATGTTCCCCTTAACT 58.326 43.478 12.66 0.00 46.15 2.24
629 637 3.058224 CGTTCTGTGGGAGAAAATGTTCC 60.058 47.826 0.00 0.00 42.56 3.62
630 638 3.609409 GCGTTCTGTGGGAGAAAATGTTC 60.609 47.826 0.00 0.00 42.56 3.18
631 639 2.293399 GCGTTCTGTGGGAGAAAATGTT 59.707 45.455 0.00 0.00 42.56 2.71
632 640 1.880027 GCGTTCTGTGGGAGAAAATGT 59.120 47.619 0.00 0.00 42.56 2.71
633 641 1.135972 CGCGTTCTGTGGGAGAAAATG 60.136 52.381 0.00 0.00 42.56 2.32
634 642 1.156736 CGCGTTCTGTGGGAGAAAAT 58.843 50.000 0.00 0.00 42.56 1.82
635 643 0.179067 ACGCGTTCTGTGGGAGAAAA 60.179 50.000 5.58 0.00 42.56 2.29
636 644 0.675083 TACGCGTTCTGTGGGAGAAA 59.325 50.000 20.78 0.00 42.56 2.52
637 645 0.892755 ATACGCGTTCTGTGGGAGAA 59.107 50.000 20.78 0.00 38.45 2.87
638 646 0.454600 GATACGCGTTCTGTGGGAGA 59.545 55.000 20.78 0.00 0.00 3.71
639 647 0.172578 TGATACGCGTTCTGTGGGAG 59.827 55.000 20.78 0.00 0.00 4.30
640 648 0.821517 ATGATACGCGTTCTGTGGGA 59.178 50.000 20.78 0.00 0.00 4.37
641 649 1.209128 GATGATACGCGTTCTGTGGG 58.791 55.000 20.78 0.00 0.00 4.61
642 650 0.846401 CGATGATACGCGTTCTGTGG 59.154 55.000 20.78 0.00 0.00 4.17
643 651 1.822581 TCGATGATACGCGTTCTGTG 58.177 50.000 20.78 3.68 0.00 3.66
644 652 2.554806 TTCGATGATACGCGTTCTGT 57.445 45.000 20.78 8.16 0.00 3.41
645 653 3.899835 TTTTCGATGATACGCGTTCTG 57.100 42.857 20.78 5.65 0.00 3.02
646 654 4.804139 AGAATTTTCGATGATACGCGTTCT 59.196 37.500 20.78 6.20 0.00 3.01
647 655 5.067021 AGAATTTTCGATGATACGCGTTC 57.933 39.130 20.78 15.48 0.00 3.95
648 656 6.578020 TTAGAATTTTCGATGATACGCGTT 57.422 33.333 20.78 5.14 0.00 4.84
649 657 6.578020 TTTAGAATTTTCGATGATACGCGT 57.422 33.333 19.17 19.17 0.00 6.01
650 658 9.575702 TTATTTTAGAATTTTCGATGATACGCG 57.424 29.630 3.53 3.53 0.00 6.01
674 682 9.743057 CCTGTGTCTGTATTTGTTTTGAATTTA 57.257 29.630 0.00 0.00 0.00 1.40
675 683 8.474025 TCCTGTGTCTGTATTTGTTTTGAATTT 58.526 29.630 0.00 0.00 0.00 1.82
676 684 8.006298 TCCTGTGTCTGTATTTGTTTTGAATT 57.994 30.769 0.00 0.00 0.00 2.17
677 685 7.581213 TCCTGTGTCTGTATTTGTTTTGAAT 57.419 32.000 0.00 0.00 0.00 2.57
678 686 7.122055 AGTTCCTGTGTCTGTATTTGTTTTGAA 59.878 33.333 0.00 0.00 0.00 2.69
679 687 6.601613 AGTTCCTGTGTCTGTATTTGTTTTGA 59.398 34.615 0.00 0.00 0.00 2.69
680 688 6.795399 AGTTCCTGTGTCTGTATTTGTTTTG 58.205 36.000 0.00 0.00 0.00 2.44
681 689 7.122055 TCAAGTTCCTGTGTCTGTATTTGTTTT 59.878 33.333 0.00 0.00 0.00 2.43
682 690 6.601613 TCAAGTTCCTGTGTCTGTATTTGTTT 59.398 34.615 0.00 0.00 0.00 2.83
683 691 6.119536 TCAAGTTCCTGTGTCTGTATTTGTT 58.880 36.000 0.00 0.00 0.00 2.83
684 692 5.680619 TCAAGTTCCTGTGTCTGTATTTGT 58.319 37.500 0.00 0.00 0.00 2.83
685 693 6.618287 TTCAAGTTCCTGTGTCTGTATTTG 57.382 37.500 0.00 0.00 0.00 2.32
686 694 6.207417 CCATTCAAGTTCCTGTGTCTGTATTT 59.793 38.462 0.00 0.00 0.00 1.40
687 695 5.707298 CCATTCAAGTTCCTGTGTCTGTATT 59.293 40.000 0.00 0.00 0.00 1.89
688 696 5.013079 TCCATTCAAGTTCCTGTGTCTGTAT 59.987 40.000 0.00 0.00 0.00 2.29
689 697 4.346709 TCCATTCAAGTTCCTGTGTCTGTA 59.653 41.667 0.00 0.00 0.00 2.74
690 698 3.136443 TCCATTCAAGTTCCTGTGTCTGT 59.864 43.478 0.00 0.00 0.00 3.41
691 699 3.499918 GTCCATTCAAGTTCCTGTGTCTG 59.500 47.826 0.00 0.00 0.00 3.51
692 700 3.136443 TGTCCATTCAAGTTCCTGTGTCT 59.864 43.478 0.00 0.00 0.00 3.41
693 701 3.476552 TGTCCATTCAAGTTCCTGTGTC 58.523 45.455 0.00 0.00 0.00 3.67
694 702 3.480470 CTGTCCATTCAAGTTCCTGTGT 58.520 45.455 0.00 0.00 0.00 3.72
695 703 2.816087 CCTGTCCATTCAAGTTCCTGTG 59.184 50.000 0.00 0.00 0.00 3.66
696 704 2.224867 CCCTGTCCATTCAAGTTCCTGT 60.225 50.000 0.00 0.00 0.00 4.00
697 705 2.440409 CCCTGTCCATTCAAGTTCCTG 58.560 52.381 0.00 0.00 0.00 3.86
698 706 1.355720 CCCCTGTCCATTCAAGTTCCT 59.644 52.381 0.00 0.00 0.00 3.36
699 707 1.354368 TCCCCTGTCCATTCAAGTTCC 59.646 52.381 0.00 0.00 0.00 3.62
700 708 2.879103 TCCCCTGTCCATTCAAGTTC 57.121 50.000 0.00 0.00 0.00 3.01
701 709 3.053619 GGTATCCCCTGTCCATTCAAGTT 60.054 47.826 0.00 0.00 0.00 2.66
702 710 2.509964 GGTATCCCCTGTCCATTCAAGT 59.490 50.000 0.00 0.00 0.00 3.16
703 711 2.509548 TGGTATCCCCTGTCCATTCAAG 59.490 50.000 0.00 0.00 0.00 3.02
704 712 2.241176 GTGGTATCCCCTGTCCATTCAA 59.759 50.000 0.00 0.00 32.45 2.69
705 713 1.843851 GTGGTATCCCCTGTCCATTCA 59.156 52.381 0.00 0.00 32.45 2.57
706 714 2.127708 AGTGGTATCCCCTGTCCATTC 58.872 52.381 0.00 0.00 32.45 2.67
707 715 1.846439 CAGTGGTATCCCCTGTCCATT 59.154 52.381 0.00 0.00 32.45 3.16
708 716 1.511613 CAGTGGTATCCCCTGTCCAT 58.488 55.000 0.00 0.00 32.45 3.41
709 717 1.271840 GCAGTGGTATCCCCTGTCCA 61.272 60.000 0.00 0.00 33.78 4.02
710 718 1.527370 GCAGTGGTATCCCCTGTCC 59.473 63.158 0.00 0.00 33.78 4.02
711 719 0.983378 AGGCAGTGGTATCCCCTGTC 60.983 60.000 0.00 0.00 35.23 3.51
712 720 0.550147 AAGGCAGTGGTATCCCCTGT 60.550 55.000 0.00 0.00 33.78 4.00
713 721 0.181350 GAAGGCAGTGGTATCCCCTG 59.819 60.000 0.00 0.00 34.15 4.45
714 722 0.044855 AGAAGGCAGTGGTATCCCCT 59.955 55.000 0.00 0.00 0.00 4.79
715 723 1.802553 TAGAAGGCAGTGGTATCCCC 58.197 55.000 0.00 0.00 0.00 4.81
716 724 2.158798 GGTTAGAAGGCAGTGGTATCCC 60.159 54.545 0.00 0.00 0.00 3.85
717 725 2.504175 TGGTTAGAAGGCAGTGGTATCC 59.496 50.000 0.00 0.00 0.00 2.59
718 726 3.906720 TGGTTAGAAGGCAGTGGTATC 57.093 47.619 0.00 0.00 0.00 2.24
719 727 4.040755 AGATGGTTAGAAGGCAGTGGTAT 58.959 43.478 0.00 0.00 0.00 2.73
720 728 3.450904 AGATGGTTAGAAGGCAGTGGTA 58.549 45.455 0.00 0.00 0.00 3.25
721 729 2.269940 AGATGGTTAGAAGGCAGTGGT 58.730 47.619 0.00 0.00 0.00 4.16
722 730 4.192317 GTTAGATGGTTAGAAGGCAGTGG 58.808 47.826 0.00 0.00 0.00 4.00
723 731 4.192317 GGTTAGATGGTTAGAAGGCAGTG 58.808 47.826 0.00 0.00 0.00 3.66
724 732 3.844211 TGGTTAGATGGTTAGAAGGCAGT 59.156 43.478 0.00 0.00 0.00 4.40
743 751 3.326747 GTTTTCTACTGCGACATCTGGT 58.673 45.455 0.00 0.00 0.00 4.00
747 755 1.724623 TGCGTTTTCTACTGCGACATC 59.275 47.619 0.00 0.00 0.00 3.06
749 757 0.856641 GTGCGTTTTCTACTGCGACA 59.143 50.000 0.00 0.00 0.00 4.35
752 760 1.059264 GCTAGTGCGTTTTCTACTGCG 59.941 52.381 0.00 0.00 0.00 5.18
754 762 3.575630 TCAGCTAGTGCGTTTTCTACTG 58.424 45.455 0.00 0.00 45.42 2.74
755 763 3.936372 TCAGCTAGTGCGTTTTCTACT 57.064 42.857 0.00 0.00 45.42 2.57
756 764 5.275788 CGTAATCAGCTAGTGCGTTTTCTAC 60.276 44.000 0.00 0.00 45.42 2.59
758 766 3.612860 CGTAATCAGCTAGTGCGTTTTCT 59.387 43.478 0.00 0.00 45.42 2.52
760 768 3.581755 TCGTAATCAGCTAGTGCGTTTT 58.418 40.909 0.00 0.00 45.42 2.43
763 771 2.094906 TGTTCGTAATCAGCTAGTGCGT 60.095 45.455 0.00 0.00 45.42 5.24
764 772 2.526077 TGTTCGTAATCAGCTAGTGCG 58.474 47.619 0.00 0.00 45.42 5.34
766 774 4.987832 AGTCTGTTCGTAATCAGCTAGTG 58.012 43.478 0.00 0.00 0.00 2.74
768 776 9.731819 TTTTATAGTCTGTTCGTAATCAGCTAG 57.268 33.333 0.00 0.00 0.00 3.42
828 843 2.108250 TCTTTTAGCTTCAGCCAAGGGT 59.892 45.455 0.00 0.00 43.38 4.34
829 844 2.795329 TCTTTTAGCTTCAGCCAAGGG 58.205 47.619 0.00 0.00 43.38 3.95
830 845 6.545298 AGATATTCTTTTAGCTTCAGCCAAGG 59.455 38.462 0.00 0.00 43.38 3.61
831 846 7.281774 TGAGATATTCTTTTAGCTTCAGCCAAG 59.718 37.037 0.00 0.00 43.38 3.61
832 847 7.112122 TGAGATATTCTTTTAGCTTCAGCCAA 58.888 34.615 0.00 0.00 43.38 4.52
833 848 6.653020 TGAGATATTCTTTTAGCTTCAGCCA 58.347 36.000 0.00 0.00 43.38 4.75
834 849 7.497249 TCTTGAGATATTCTTTTAGCTTCAGCC 59.503 37.037 0.00 0.00 43.38 4.85
835 850 8.430801 TCTTGAGATATTCTTTTAGCTTCAGC 57.569 34.615 0.00 0.00 42.49 4.26
840 855 9.777297 GAGGAATCTTGAGATATTCTTTTAGCT 57.223 33.333 0.00 0.00 33.73 3.32
841 856 8.998377 GGAGGAATCTTGAGATATTCTTTTAGC 58.002 37.037 0.00 0.00 33.73 3.09
844 859 9.987726 AAAGGAGGAATCTTGAGATATTCTTTT 57.012 29.630 0.00 0.50 33.73 2.27
845 860 9.987726 AAAAGGAGGAATCTTGAGATATTCTTT 57.012 29.630 0.00 0.00 33.73 2.52
846 861 9.987726 AAAAAGGAGGAATCTTGAGATATTCTT 57.012 29.630 0.00 0.00 33.73 2.52
855 870 9.853177 GGATAGAATAAAAAGGAGGAATCTTGA 57.147 33.333 0.00 0.00 0.00 3.02
856 871 9.859152 AGGATAGAATAAAAAGGAGGAATCTTG 57.141 33.333 0.00 0.00 0.00 3.02
858 873 8.664992 GGAGGATAGAATAAAAAGGAGGAATCT 58.335 37.037 0.00 0.00 0.00 2.40
859 874 7.885922 GGGAGGATAGAATAAAAAGGAGGAATC 59.114 40.741 0.00 0.00 0.00 2.52
860 875 7.202326 GGGGAGGATAGAATAAAAAGGAGGAAT 60.202 40.741 0.00 0.00 0.00 3.01
861 876 6.102762 GGGGAGGATAGAATAAAAAGGAGGAA 59.897 42.308 0.00 0.00 0.00 3.36
862 877 5.611408 GGGGAGGATAGAATAAAAAGGAGGA 59.389 44.000 0.00 0.00 0.00 3.71
863 878 5.372661 TGGGGAGGATAGAATAAAAAGGAGG 59.627 44.000 0.00 0.00 0.00 4.30
864 879 6.515512 TGGGGAGGATAGAATAAAAAGGAG 57.484 41.667 0.00 0.00 0.00 3.69
865 880 6.918951 TTGGGGAGGATAGAATAAAAAGGA 57.081 37.500 0.00 0.00 0.00 3.36
866 881 6.323996 GGTTTGGGGAGGATAGAATAAAAAGG 59.676 42.308 0.00 0.00 0.00 3.11
867 882 6.895204 TGGTTTGGGGAGGATAGAATAAAAAG 59.105 38.462 0.00 0.00 0.00 2.27
868 883 6.806217 TGGTTTGGGGAGGATAGAATAAAAA 58.194 36.000 0.00 0.00 0.00 1.94
869 884 6.410222 TGGTTTGGGGAGGATAGAATAAAA 57.590 37.500 0.00 0.00 0.00 1.52
870 885 6.410222 TTGGTTTGGGGAGGATAGAATAAA 57.590 37.500 0.00 0.00 0.00 1.40
871 886 5.633854 GCTTGGTTTGGGGAGGATAGAATAA 60.634 44.000 0.00 0.00 0.00 1.40
872 887 4.141251 GCTTGGTTTGGGGAGGATAGAATA 60.141 45.833 0.00 0.00 0.00 1.75
873 888 3.373110 GCTTGGTTTGGGGAGGATAGAAT 60.373 47.826 0.00 0.00 0.00 2.40
874 889 2.025321 GCTTGGTTTGGGGAGGATAGAA 60.025 50.000 0.00 0.00 0.00 2.10
875 890 1.564348 GCTTGGTTTGGGGAGGATAGA 59.436 52.381 0.00 0.00 0.00 1.98
876 891 1.410224 GGCTTGGTTTGGGGAGGATAG 60.410 57.143 0.00 0.00 0.00 2.08
877 892 0.629058 GGCTTGGTTTGGGGAGGATA 59.371 55.000 0.00 0.00 0.00 2.59
998 3715 1.153784 GCCGCCATGTTGACCATTG 60.154 57.895 0.00 0.00 0.00 2.82
1035 3752 2.042025 AGGAGGAGCAGGAGGAGC 60.042 66.667 0.00 0.00 0.00 4.70
1119 3836 1.146263 GAGGCCGAACCGATCCATT 59.854 57.895 0.00 0.00 46.52 3.16
1430 4147 4.201951 CGGTACTGCAAAGCGGAT 57.798 55.556 11.37 0.00 38.46 4.18
1557 4317 7.596494 ACAAATATGCTCATATAATGTGTGGC 58.404 34.615 14.88 0.00 34.97 5.01
1591 4351 3.250040 ACAAACTTGCGTGGAAGTATGTC 59.750 43.478 7.20 0.00 35.01 3.06
1593 4353 3.554524 CACAAACTTGCGTGGAAGTATG 58.445 45.455 7.20 3.52 35.01 2.39
1645 4405 2.153645 TGTGACTTACTAAGACGCCGA 58.846 47.619 2.65 0.00 33.73 5.54
1648 4408 5.828747 TCCATATGTGACTTACTAAGACGC 58.171 41.667 1.24 4.14 34.92 5.19
1667 4436 3.525537 CAGACACGCTATCAAACTCCAT 58.474 45.455 0.00 0.00 0.00 3.41
1693 4462 0.036388 ACGAATCAGACCGGTGCAAT 60.036 50.000 14.63 0.00 0.00 3.56
1698 4467 2.331194 CGTTAAACGAATCAGACCGGT 58.669 47.619 6.92 6.92 46.05 5.28
1700 4469 2.331194 ACCGTTAAACGAATCAGACCG 58.669 47.619 0.00 0.00 46.05 4.79
1736 4505 2.158957 CGGCCCTTTAAGATAGCTCACA 60.159 50.000 0.00 0.00 0.00 3.58
1743 4512 3.359695 ACTTTGCGGCCCTTTAAGATA 57.640 42.857 0.00 0.00 0.00 1.98
1775 4544 6.155049 TCATTCGATCTTGATATGGCTCCATA 59.845 38.462 10.72 10.72 42.28 2.74
1784 4553 5.777223 TCACCTCCTCATTCGATCTTGATAT 59.223 40.000 0.00 0.00 0.00 1.63
1785 4554 5.140454 TCACCTCCTCATTCGATCTTGATA 58.860 41.667 0.00 0.00 0.00 2.15
1786 4555 3.963374 TCACCTCCTCATTCGATCTTGAT 59.037 43.478 0.00 0.00 0.00 2.57
1796 4565 1.866015 TCACGGATCACCTCCTCATT 58.134 50.000 0.00 0.00 42.47 2.57
1822 4591 4.133820 TCACCACATCAGTCACGAAAAAT 58.866 39.130 0.00 0.00 0.00 1.82
1836 4609 1.757118 CTACCTCCGACATCACCACAT 59.243 52.381 0.00 0.00 0.00 3.21
1854 4627 0.672889 TTACCAACGCGTGTCACCTA 59.327 50.000 14.98 0.00 0.00 3.08
1865 4638 3.124921 CCCCTGCGCTTACCAACG 61.125 66.667 9.73 0.00 0.00 4.10
1871 4644 0.690762 AGAAGAAACCCCTGCGCTTA 59.309 50.000 9.73 0.00 0.00 3.09
1872 4645 0.890996 CAGAAGAAACCCCTGCGCTT 60.891 55.000 9.73 0.00 0.00 4.68
1873 4646 1.302832 CAGAAGAAACCCCTGCGCT 60.303 57.895 9.73 0.00 0.00 5.92
1874 4647 1.172812 AACAGAAGAAACCCCTGCGC 61.173 55.000 0.00 0.00 0.00 6.09
1875 4648 1.318576 AAACAGAAGAAACCCCTGCG 58.681 50.000 0.00 0.00 0.00 5.18
1876 4649 2.693074 TCAAAACAGAAGAAACCCCTGC 59.307 45.455 0.00 0.00 0.00 4.85
1877 4650 5.163416 ACAATCAAAACAGAAGAAACCCCTG 60.163 40.000 0.00 0.00 0.00 4.45
1878 4651 4.962362 ACAATCAAAACAGAAGAAACCCCT 59.038 37.500 0.00 0.00 0.00 4.79
1880 4653 8.887036 AATTACAATCAAAACAGAAGAAACCC 57.113 30.769 0.00 0.00 0.00 4.11
1907 4686 3.662759 AGGAACACCAACCAAGAAAGA 57.337 42.857 0.00 0.00 0.00 2.52
1908 4687 4.081697 ACAAAGGAACACCAACCAAGAAAG 60.082 41.667 0.00 0.00 0.00 2.62
1913 4692 1.205893 GCACAAAGGAACACCAACCAA 59.794 47.619 0.00 0.00 0.00 3.67
1947 4726 7.029563 GTCTGACAAAACTGAAAAGACAACAT 58.970 34.615 2.24 0.00 34.19 2.71
1950 4729 6.611381 CAGTCTGACAAAACTGAAAAGACAA 58.389 36.000 10.88 0.00 44.54 3.18
1973 4752 2.159156 AGTTCAAGTCACGTACACAGCA 60.159 45.455 0.00 0.00 0.00 4.41
1975 4754 5.690409 ACAATAGTTCAAGTCACGTACACAG 59.310 40.000 0.00 0.00 0.00 3.66
1982 4761 8.239681 TCATAAAGACAATAGTTCAAGTCACG 57.760 34.615 0.00 0.00 33.56 4.35
2032 4811 2.714250 ACCTTAACCATCCAACCACAGA 59.286 45.455 0.00 0.00 0.00 3.41
2033 4812 2.819608 CACCTTAACCATCCAACCACAG 59.180 50.000 0.00 0.00 0.00 3.66
2035 4814 2.167662 CCACCTTAACCATCCAACCAC 58.832 52.381 0.00 0.00 0.00 4.16
2067 4846 4.706476 TCAGAATTTGAACCCTAATGCTGG 59.294 41.667 0.00 0.00 39.85 4.85
2071 4850 6.095860 TGAGCATCAGAATTTGAACCCTAATG 59.904 38.462 0.00 0.00 42.56 1.90
2072 4851 6.189859 TGAGCATCAGAATTTGAACCCTAAT 58.810 36.000 0.00 0.00 42.56 1.73
2073 4852 5.569355 TGAGCATCAGAATTTGAACCCTAA 58.431 37.500 0.00 0.00 42.56 2.69
2074 4853 5.178096 TGAGCATCAGAATTTGAACCCTA 57.822 39.130 0.00 0.00 42.56 3.53
2109 4890 6.136541 ACGCTGGAAATCCTGAAATAAATC 57.863 37.500 10.20 0.00 37.15 2.17
2118 4899 1.394917 CGAGAAACGCTGGAAATCCTG 59.605 52.381 0.44 1.39 37.93 3.86
2134 4915 4.336889 ACATCTTTTCCACTGAACGAGA 57.663 40.909 0.00 0.00 31.32 4.04
2154 4935 3.660865 ACACCTCGTAGTTGATGGAAAC 58.339 45.455 0.00 0.00 0.00 2.78
2155 4936 3.576982 AGACACCTCGTAGTTGATGGAAA 59.423 43.478 0.00 0.00 0.00 3.13
2182 4964 2.024176 ACTTGGGATTGACGGAATCG 57.976 50.000 4.02 0.00 41.45 3.34
2185 4967 5.770663 TCATTTTAACTTGGGATTGACGGAA 59.229 36.000 0.00 0.00 0.00 4.30
2187 4969 5.637006 TCATTTTAACTTGGGATTGACGG 57.363 39.130 0.00 0.00 0.00 4.79
2240 5030 9.884636 AGTAGTACATGCTTTGTGTGAAATATA 57.115 29.630 2.52 0.00 39.48 0.86
2249 5040 6.852853 CAGTCAAAAGTAGTACATGCTTTGTG 59.147 38.462 2.52 9.45 42.28 3.33
2250 5041 6.765989 TCAGTCAAAAGTAGTACATGCTTTGT 59.234 34.615 2.52 0.00 42.28 2.83
2258 5049 8.367911 AGATGAACATCAGTCAAAAGTAGTACA 58.632 33.333 15.63 0.00 40.22 2.90
2275 5066 7.443302 TCCTTCCTCTTCATAAGATGAACAT 57.557 36.000 0.00 0.00 43.84 2.71
2281 5072 8.156822 AGTTTCTTCCTTCCTCTTCATAAGAT 57.843 34.615 0.00 0.00 36.82 2.40
2282 5073 7.560796 AGTTTCTTCCTTCCTCTTCATAAGA 57.439 36.000 0.00 0.00 35.87 2.10
2287 5078 5.377478 GGAAAGTTTCTTCCTTCCTCTTCA 58.623 41.667 15.05 0.00 41.56 3.02
2305 5096 1.801178 GACGCAGGTGAAAGAGGAAAG 59.199 52.381 0.00 0.00 0.00 2.62
2312 5105 2.383527 GGAGCGACGCAGGTGAAAG 61.384 63.158 23.70 0.00 0.00 2.62
2346 5139 1.407575 GGAAGGAAGAGGGCTAGTTGC 60.408 57.143 0.00 0.00 41.94 4.17
2372 5165 2.669569 GGCTTTGCCTGACAGCGA 60.670 61.111 0.00 0.00 46.69 4.93
2406 5199 2.203938 AAAGAGAGGACCCCGCCA 60.204 61.111 0.00 0.00 0.00 5.69
2407 5200 2.585153 GAAAGAGAGGACCCCGCC 59.415 66.667 0.00 0.00 0.00 6.13
2422 5215 1.052124 AGTTCCACCACGTCAGGGAA 61.052 55.000 7.13 7.13 37.09 3.97
2429 5222 2.879233 ATGCCGAGTTCCACCACGT 61.879 57.895 0.00 0.00 0.00 4.49
2430 5223 2.047274 ATGCCGAGTTCCACCACG 60.047 61.111 0.00 0.00 0.00 4.94
2438 5231 4.778143 GCCGACCCATGCCGAGTT 62.778 66.667 2.62 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.