>input_sequence_79032
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------------------------------------ATGGTCAACATGGCGGCCACAGCCCCCAGCCGCCGGCTCCTCCT
GCTCCTCCTCGGCCTGAACCTCCTCACTAGCTCCACCTCGACGGCGCCCTACGACCCTCCCACCGTGCCGGAGCTAATGG
ATCGGTTCGGCCTCCCGCGCGCTCTCCTCCCGAAAACCGCCCGGCGGTACCTCCTCCACTCCGACGGCTCCTTCGAGCTC
TTCCTCGACGACGGCTGCGAGATCGAGGCCGGGGGCTACCGCGTCCTGTACGACATCAAGCTCTCCGGGTCCGTGGCGCC
CGGGGCGGTCACGGGGCTCGAGGGCGTCCGCGTGCGCGTGCTGTTCGTCTGGGTCCCCGTCACCGGCGTCGAGGTTGGCG
GCGGGGTCGTCACCCTCAGCGTCGGTCCCGTCAAGAAGTCGTTCCCTGCCGTTGGCTTCAAGGCCAATCCGCTTTGCAGT
ACCGGCGCCGCCGTCGTGGATGTAGCTTAG--------------------------------------------------
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>chr2A_1_TraesCS2A01G310100
TGTGGATGTTCCTGTTGTCATAGGGTTCGGTATGCACGCAAGTGATGTCGGCTATTTGTAAAGTTTTAATATTGTGATCC
TTCAACAACACCCCATGTGTACTCTTGTCTCTCATGGTGATGGTCCTTTTGTCTAGTAGTTAAGCCTTGCCTTCTCATGA
GCGTCTATATTTTTGGCCTTCTTTCATTCTAATTACTTGCGCGTAGTTTGGTTTGGTTTTCCTCGTAAACGGCGTCGA-T
TTGTTAAGATTTTCGACCGGATTTTATTATACATTGGATCAAAATTTTATTTGAATGAGATCAAATTCTGATGGGAAACG
CTGTAGATTCCATGAAGATTAAACATATC----TTTTTTACAATATTAAACTTAGCTAGCTCAGTTAAAAAA-GACCCTC
AAAATATATCAGGGCAGAATTGCTTCGTGTCACGTATGTGGCACTTATCATCCGATAGGAGTCTAGCTTTTTTG-AACAC
GGTACAGGCACAAGCGCTTATATACACGCACATATACTCACTTCTATGAACGCGCGCACACACACACATCATGCCCCTAT
GAGCACATCCGAGGGAATGAGCCGGCACATTATTTTGAAATTTTACGAAGCCGCTGTAGATGTCTCATAGTTAAGGGGAA
CATTTTCTCCCACAGAACGCGTATCATCGAAAATTCTAAAATAAATTCAAAACAAATACAGACACAGGAACTTGAATGGA
CAGGGGATACCACTGCCTTCTAACCATCTAACCAGATGTCGCAGTAGAAAACGCACT-------AGCTGATTACGAACAG
ACTATAAAATTCTGCAAAGGCAATGGCGATGTTTGCATTATCACCCTTGGCTGAAGCTAAAAGAATATCTCAAGATTCCT
CCTTTTTATTCTA-------------------------------------------------------------------
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-------------------------------------------------------------------------TCCTCCC
CAAACCAAGCCCAACTAGAACAGAGCTCCCTTGGCCGGTGGCACTTTCCCATCCATCCGTCGAGAGAGAAACAACAAACG
CCCAGAGCCGAAACCAAGAACAAGCAAG--CCCCCAATGGTCAACATGGCGGCCACAGCCCCCAGCCGCCGGCTCCTCCT
GCTCCTCCTCGGCCTGAACCTCCTCACTAGCTCCACCTCGACGGCGCCCTACGACCCTCCCACCGTGCCGGAGCTAATGG
ATCGGTTCGGCCTCCCGCGCGCTCTCCTCCCGAAAACCGCCCGGCGGTACCTCCTCCACTCCGACGGCTCCTTCGAGCTC
TTCCTCGACGACGGCTGCGAGATCGAGGCCGGGGGCTACCGCGTCCTGTACGACATCAAGCTCTCCGGGTCCGTGGCGCC
CGGGGCGGTCACGGGGCTCGAGGGCGTCCGCGTGCGCGTGCTGTTCGTCTGGGTCCCCGTCACCGGCGTCGAGGTTGGCG
GCGGGGTCGTCACCCTCAGCGTCGGTCCCGTCAAGAAGTCGTTCCCTGCCGTTGGCTTCAAGGCCAATCCGCTTTGCAGT
ACCGGCGCCGCCGTCGTGGATGTAGCTTAGTTTG---TACTACTAGAGCAGTTAGTTTGTTGCGATTCTTAGGCCACGAT
TGGTGTACACTTGTAC----TTGTATGACGCTG------------------------------------ATATACAGCCA
CACATTATATGAGCATATTTGTTGGTCAAAGACATACTTCCACGCAAGTTTGTGGTTCATGGCTGGCAGGTATGATTTAC
TCCTTCGGCGTCTTAGT---------AAGTCACATATGGAGTTTGATAGCGTGTCTGGGATATTGCACCGGTCTGATTCG
TTTAACGGTAATGATTTCATCTTTTGTGAGCTATCTTAAAGGGCCGCAAAGTTGCATATCAGCTATGGAGCCATATCAAG
ATCGAATGAGGAGGTGATCCGTGAATTATTAT----TTTTCGTGACTGATGTGGTGATGTCGGAGGTAGGTGACACGCGT
TGGTAAGCGCAGG------GGTTTCTTCTGTTTTGATTGTAATTTTCTTTCTTGGTTGGTGTTCCTTTGTGCAAAGACTA
GTGTTATGTTGTCTTTTCAGTTTTGTCAGACTGCTGTGTACGTGACTTGAACTATTGTCTTTATGATATAAATGAGACTC
ATATAACCAATCTGTGGTTGGATGGTTAAGGTGGACAGTGGTATCCCAGCATT--AGGGTTCAAATTCTGATGCTCACAC
TTGTTCCTGGATTTATTTCAGGATTTCCAGCGTTTCTCGTTCAGTGGAAAAGATGTTT-CCATCAACTACGAGGTGTCTT
TAACGATTCCGTCAATCC--------CAAGTTAAAATGAAATGAGATCCATATAACCATGAAAAGAATATATA-TTTCAC
ACAAAGCATGTACTACTTTTGACTGATGTTCATCTTATGAAGAGGAAGGAAGAAAC--TTTCCTCTTTCACCTGCGTCGC
TCCACACCCTAGCCGACGGCAACTAGCCCTCTTCCTTCCCCTCGTCGCTGTCAGGCAAAGCCCGATAGGTGCTCGTGGTG
GCGGGGTCCTCTCTTTCCCTGACGTGGTGGAACTCGGCATGGGTCGGCGTCCCCGTGTGGTGGTGG
>chr2B_4
---GGATGTTCCTGTTGTCATAGGGTTCGGTATGCACGCTAGTAATGTCTGCTATTTGTACAGTCTTGATATTGTGATCC
TTCGACAACACCCTATGTGTACTCTTGCCTCTCGTGGTGATGGTCCTTTTGTCTGCTAGTTAGGTTGTGCCTTGTCGTGA
GTGTCTATATTTCTGGCCTTCTTTCACCCTTATTACTTGTGCGTAATTTGGTTTGGTTTTCCTCATAAACGGGGTTGATT
TTGTTAAAATTTTCGACCGGATTTTCTTATACACTGGATAAATTTTTTACTTGAATGAGATTAAATTCTAATGGGAAACG
CTTTAGATACCATGAATATTAAACACATCTTCTTTTTTTACAGTATTAAACTTAGCTAGCTCAGTTAAAAAAAGACCCTC
AAAAATTGTCAAGGCGGAATTGCTTATTGCCACACATGTGGCACTTATCATTGGGTAGAAGTCTAGCTTTTTTTCAACAC
AGTATAGACGTAAGTGCCCACATACACGTGCATACACTCATTCCTATGAACGCGCATACTCACGCCCTACTCCTATGAT-
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------------CTGCCTCCTAATCATCTAGCCACAGGTTGGTTTTGCAATAGAAAAAGTAGCAAGCTAATTACGAACAG
ACTATAAAATTCTGCAAAGGCAATGGCGATGTTTGCATTACC--------------------------------------
------------ACCCTTCACTGAAGCTAAGGGCGTGTTTGGTTGCCCGCATGCAGCCCAACCAGGCCCGCGCGGGATGT
GTGCAGCCTGTTTGGTTGGCTGGGCTGCATACAGTTTGAGGCCCGCACGGACCTCAAAGCAGCCCGCAGCTTGGCCCGGC
GGAAACTGCCGAATCGGTAGTTTCTCGCGAGCCTGGCCGGGCGCGGCCGCGCGTGCAGGGCAGTTGCACGCCTCGGGCAG
CGCGGGAGACGGAGGCGACGTCTCATTACTCACCCTCACTCTCCTGTCACCGCCCAGGCGCACTGTTCCCACCGCTTCCT
CTCTCTCCCTCACTGCCCCTCCCTCTCCTCTCCTCTTCTCCGATGGCTCCGCCATCCCCACCGCTGCACCACCCTTTGAC
CCCGGTCGACCAGCGCATCGCCAGCATCCAGGAGCGTTGGCTGGCCGGGCTCCAGAACTCAGGCCGCGACCTGGCATCGG
CGCTGCGGGCGCCGTCCCCCATCTGTTGCCGGCCTCCACGAGCGCCGGCCAATGCGGTGTCGGCCGCTCCTGCTCCGCCG
CCGATTCCGGACCTCGTGGTCCTGGGCTCGGCGCCGGCGCCATCGACGGAGCCGCCCCTTCTTGGGACACCATTGGGCTC
GGGGGTTTTCTTGACCCCCGTCCAAGGGTTTTCTCCGGTCGGCGGGCCGTCCTTCTCGACCTCCTGCGTGGCGTTCAGCA
TGGGGCCGATGCCGCAGGCCGTCGCTGGGGCCGGCTCGTCCTCTGCTCCGCCATCTCTATCCTTCCCGCCGGAGTTTTCA
CCCCGGCCTCGGTTCGCCGCGGCTACTGTGCTCCGGTGAGTCAAACCCCCTCAAAGCTTGCTCCTAGATGTAGATTAGCG
GTTAATTCTTAGGCATGTGCTAGGATTGATAGGATAATTTTCTTGTGCTACTGCTTGTGTGTCCTAAGATTTGTGCTACA
TGCTAGTAGCTGTGTTCATGCTAGAATCATGTTCATGTTGACTGATGAATGTTATACTCATGGCATGTTCATGTTGAGTG
ATGAATGCTAGAATCATGTTGACTGATGGCATGTTCATGTTAGGATCGTGTCCTTGTTTCATGTGCATGTTGAAGTTAGG
GTTTGTGCCATCAGTGGATGTTATACGTGCATGTAGTAGGACCATTTTAGGATGGTCCCAAATCTGCATGGCTGCACATG
GGTGCTATTGGCACTTGCTGTTGCTATTTTTAGATGTTTCCTTGTTTAGGATAGTGCAGTGATCAGTGCCAGTTACAGCA
AAGAAGATGCCACTGATCAATGACTTGCCCAACAACAAGTGTCATTGATAAGTGGCATTTGGCAAATGCCACTTATCAAT
GGCACTTGTTGTTGGGCAAAATGCCACTTATCAATGGCACTTGCTATTGGGCAAGTCACTGATCAGTGTCATTGATCAGT
GCCATTTGCACTACAACAAGTAGATTAGTGCTCTTGCTCAACATCAAGTGTCACTGATCATTGCCATTTGGCCATGAGAA
AATGCCACTGATCAGTGTCATTTGCTTGCTTGCTTGCTTGCTTTGTTTGATACTAATACTTGTCATGTTGCCTGACAAGA
TACTGAAGACTGACTGGGATGTGGCGGGTGGAGGAGCTCAGGTGATGGTCGGAGCTAAGCGCGTCAAGGATTTCATCCCC
ACGGACAGGTGGCTCAGGACGGTGGACCTGCCTGGCAGGATCGCCTTCATGAGCGTGCCTCGTTCAAGGGGACGATCTCC
GAGGCAGGGCCACGAGGAGGGAGTCAGGGAGCCGATGAGATTATACCAGCAGATCAAGGACAACGAGGACCTCGCCATGC
TCGTCATCCCTCCCAAGTTCGTGGAGGTGATGAACACCTGGCTGGTCATCAAGTGACTCCCGCGCGTGATCGGGTTCTCG
GCCAACAAGCGGTGCGTGTTCTGGGTGCAGGTCCAGAACTTCGAGGGCCACATGGTGCTTGGCCGGGGGTGGAACTACTT
CTGCCACCGCCACTGCATCGTCCCCGGCGACCTCGTCGTTGTGCGCACCTCAGGACTCGGACTGAAGGTTCAGATCTACA
ACCACGACTCATCGGTGATGTGCAGGTATTGTTGCAGCGGGCACAACTGCCATGGTGGCATCGAGCAGGCTATGTAGTTA
AGTCAAGTAAGGTGTTAGTGGAGTACTTTTATGGTGTGTGGCGAGACTTGTGCTGGGAACTTGTTCATATTTTGGCCAGG
AGCAGCACCCTGGCACGGAGCAGGGAAGGAGGATGCCCCTGCTCTTAATCTAGACTTATGCTATCTAGTTAAGTAGTTTG
CTGTCATTTGCTTGATTGTTGTGTTAAGTTTGTTGTCATTACATTGCTTGCTTTGTTTGATCTTTCTGTTTTGCTGTTGC
TGTTGTGCTGATCATGTGTGGTGGTAAGGCCACCACATTTGAATGGGGTGAGGAGAACACAAACGTTGTTTGCAACCAAA
CAGCTGAAGTTTGCATCTGCTCACATCCTAAGCACAAATGCGGGCAACCAAACAGCAGGGGGTAAGTGTCTCTCGATGCG
ATGCAGGCAACCAAACAGGTTGCATCTGCTGCATATGAGGCTGTATTTCAGCAACCAGACTGGCTAGAGATGGACATGCA
ATGCAACTACTATTGCAAACTGCAACTAAACACGCCCTAAAAAAATATATCAAGATTCCTCCTTTTTATTCTATCCTTCC
CAAACCAAGCCCAGCTAGGACAGAGCTCCCTTGACCGGTGGCACTTTCCCATCCATCCGTCAAGAGAGAAACAACAAACG
CCCAGAGCCGAAACCAAGAACAAGCAAG--CCCC-AATGGTCAACATGGCGGCCGCAGGCCGCAGCCGCCGCCTCCTCCT
GCTCCTCCTCGGCCTGAACCTCCTCACTAGCTCCACCTCAACGGCGCCCTACGACCCTCCCACCGTGCCGGAGCTGATGG
ATCGGTTCGGCCTCCTGCGCGCTCTCCTCCCGAAAACCGCCCGGCGGTACCTCCTCCACTCCGACGGCTCCTTCGAGCTC
TTCCTCGACGACGGCTGCGAGATCGAGGCCGGGGGCTACCGCGTCCTGTACGACATCAAGCTCTCCGGGTCCGTGGCGCC
CGGGGCGGTCACGGGGCTCGAGGGCGTCCGCGTGCGCGTGCTGTTCGTCTGGGTCCCCGTCACCGGCGTCGAGGTGGGCG
GCGGGGTCGTCACCCTCAGCGTCGGTCCCGTCAAGAAGTCGTTCCCTGCCGTTGGCTTCAAGGCCAGTCCGCTTTGCAGT
ACCGGCGCCGCCGTCGTGGATGTAGCTTAGTTTG---TACTACTAGAGCAGTTAGTTTGTTGCAATTCTTAGGCCACGAT
TGGTGTACACTTGTAC----TTGTATGACGCTGGAGGAAGGAATATCGAATACGTGTGTGTATACACGGATATACATCCA
CACATTATATGAGCATATCTGTTGGTCAAATATATACTTTCACGCAAGTTTGTGGTTCATGGCTGGCAGGTATGGTTTGC
TCCTCCGACATCTTAGTCGTGCGGGGAAGTCACATCTGGAGTTTGATAGCGTGTCTGGGATGTTGCCTTGGTTTGATTCG
TTTAAC-GTAATGATTTCATCTTTGGTGAGCCATCTCGAAGGGCCGCAAAGTTGCATAGCAGCGATGGAGCCGCGTCAAG
ATCGGACGAGGAGGTGATCTGTAAAAAAAA--------TTCGTGGCTGTTGTGGTGATGTCGGAGGCAGGTGACACGTGT
TGGCGTCAAGCGCAGAGATGGTTTCTTCTGTTTTGATTGTAATTTGTTTTCATGGTTGGTGTTCCTTTGTGCAAAGACTA
GTGTTGTGATGTCTTTTCAGTTTTGTCAGACCGTTGTGTATGTGACTTGAACTATTGTCTTTATGATATAAATGAGACTC
ATATAACCAACATATGGTTGGATGGTT-AGGTGGACAGTGGTATCTCAGTCCACCAGGGTTTAAATCCCGATGCTCACAT
TTGTTCCTGAATTTATTTTAGGATTTCCAGCGTTGCTCTTTCAGTGGGAGGAGACGTTCCCATCAACTACGAGATGTCTT
TGGTGACTTCGTCAATCTGTCAATCTCAAGTTGAAATGAAATGAGACCCATATAACTATGAAAAGAATACATACTTTCAT
GCAAAGCAGGTACTACTTTTGACTGGTGTTCCCCTTAGGAAGAGCAAGGAAGAAATTTTTTCCTTTTTCACCCGCGTCGC
TCCACACCCTAGCCGACGTCAACTAGCCCTCTTCCTTCCCCTCGCCGCCGCCAGGCAAAGCCCGATAGGTGCTCATGGCA
GCGGGGTCCTCTCTCTCCCTGGTGTGGTGGGGCTCGGCATGCGTCGGCGTCCTCGTGTGGTGGCGG
>chr2D_780
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-------------------------------------------------------------------------CGAACAG
ATTATGAAATTCTGCAAAGGCAATGGCGATGTTTGCATTACC--------------------------------------
------------A-------------------------------------------------------------------
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-------------------------------------------------------------------------TCCTCCC
CAAACCAAGGCCAACTAGAATAGAGCTCCCTTGGCCGGTAGCACTTTCCTATCCATCCGTCGAGAGAGAAACAACAAACG
CCCAGAGCCGAAACCAAGAACAAGCAAGACCCCC-AATGGTCAACATGGCGGCCGCAGCCCCCAGCCGCCGCCTCCTCCT
GCTCCTCCTCGGCCTGAACCTCCTCGCTAGCTCCACCTCGACGGCGCCCTACGACCCTCCCACCGTGCCGGAGCTGATGG
ATCGATTCGGCCTCCCGCGCGCTCTCCTCCCGAAAACCGCCCGGCGGTACCTCCTCCACTCCGACGGCTCCTTCGAGCTC
TTCCTCGACGACGGCTGCGAGATTGAGGCCGGGGGCTACCGCGTCCTGTACGACATCAAGCTCTCCGGGTCCGTGGCGCC
CGGGGCGGTCACGGGGCTCGAGGGCGTCCGCGTGCGCGTGCTGTTCGTCTGGATCCCCGTCACCGGCGTCGAGGTTGGCG
GCGGGGTCGTCACCCTCAGCGTCGGTCCCGTCAAGAAGTCGTTCCCTGCCGTTGGCTTCAAGGCCAGTCCGCTTTGCAGT
ACCGGCGCCGCCGTGGTGGATGTAGCTTAGTTTGTACTACTACTAGAGCAGTTAGTTTGTTGCGATTCTTACGCCACGAT
TGGTGTACACTTGTACGTACTTGTATGACGCTGGAGGAAGGAATACTGAATACGTGTGTGTATATACGGATATACATCCA
CACATGATATGAGCATATTTGTTGGTCAACTATATACTTTCCCGCAAGTTTGTGGCT------------GTATTATTTGC
TCCTCCGACGTCTTAATCGTGCGGGGAAGTCACGTCTCGGGTTCGGTAGCGTGTCTAGGGTGTTGCCCTAGTCTGGTTCG
TTTAACGGTAATGATTTCATCTTTCACGAGTCACCTTAAAGGGCCGCAAAGTTGCATATCAGTGATGGAACCGCGTCGAA
ATCAGGTGAGGAGGTGATCCGTGATTTTTTCTTTTCTTTTCATGACTGTTGTGGTGGTGCCG------------------
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------------------------------------------------------------------
>SNPs
SSS------------------------------------S---S-----S----------S---S--S------------
---S---------S-------------S-----S--------------------SS------S-SSS------S--S---
-S----------S-------------SS--S--------S-----S------------------S-------S--S----
-------S-----------------S-------S-----S--SS-----S-----------S-------S----------
--S-----S-------S--------S----------------S-------------------------------------
----SS-S---S---S---------SS--S---SS----------------SS-S---S--------------S------
S---S--S-SS---S--SS-S-------SS----S-----S-S------------SS--S---S-S-SS-SSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS------S----S------S---S-S--S-SSS-S-S--SS-S-SS-----------S-----------
----------------------------------------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS--------------------------------------------------------------------
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----------------------------------S-------------------S----------------S--------
---------------------------------------------------------------------------S----
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------------------------------------------------------------------S-------------
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----------------------------------------------------------------------------S---
------------------------------S-S------S--------------------------------------S-
----S--S---------------------------S-------------------------S----S-S-----------
------------------------S------S-------------------------------S--------SSS-----
----S-------------------------S-----------------S-----------------S----------S--
---SSSSSSSS-S--------------------------------SS----S----------------------------
-----S--S----------------------S-S------S---------------------------------------
----------SS-S-------------S-----------------S---SSSS--------S----S-S----------S
---------S--------S---------------S---S--------S-SSSSSSS-----------------S------
-SSS--S-S--------S--------------S-------------S---------S------------S---------S
S-------S----------------S-----SS----S------S----------S--------S-------S-------
------------------S-------------------------S---S-S-----------------------S---SS
--------------S------SS-------SS---------S----------S----------S--
>forward_625
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---------------------------------------------CGAAGCCGCTGTAGATGTCT---------------
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>reverse_4462
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-------------------------------------------------------------ATTGCACCGGTCTGATTCG
T-------------------------------------------------------------------------------
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