Multiple sequence alignment - TraesCS2A01G301400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G301400 chr2A 100.000 2666 0 0 1 2666 516430698 516433363 0.000000e+00 4924
1 TraesCS2A01G301400 chr2A 89.429 350 31 4 2323 2666 148619209 148618860 1.130000e-118 436
2 TraesCS2A01G301400 chr2A 95.789 95 3 1 1699 1793 88278031 88278124 4.600000e-33 152
3 TraesCS2A01G301400 chr2D 91.991 1748 76 12 1 1709 382178812 382180534 0.000000e+00 2394
4 TraesCS2A01G301400 chr2D 92.500 240 9 4 1790 2025 382180532 382180766 4.250000e-88 335
5 TraesCS2A01G301400 chr2D 89.831 177 17 1 2124 2299 424828622 424828798 2.670000e-55 226
6 TraesCS2A01G301400 chr2D 96.774 93 3 0 1700 1792 207409733 207409825 3.550000e-34 156
7 TraesCS2A01G301400 chr2B 91.998 1737 75 18 1 1709 453030224 453031924 0.000000e+00 2379
8 TraesCS2A01G301400 chr2B 91.892 259 21 0 2059 2317 453032926 453033184 1.950000e-96 363
9 TraesCS2A01G301400 chr2B 90.588 170 15 1 2130 2299 767485701 767485533 9.600000e-55 224
10 TraesCS2A01G301400 chr2B 94.737 114 4 1 1830 1941 453032784 453032897 2.730000e-40 176
11 TraesCS2A01G301400 chr5A 89.722 360 30 5 2312 2666 438144799 438145156 1.130000e-123 453
12 TraesCS2A01G301400 chr3D 90.286 350 28 4 2322 2666 236667353 236667005 1.130000e-123 453
13 TraesCS2A01G301400 chr3D 88.187 364 37 4 2308 2665 582888324 582888687 1.900000e-116 429
14 TraesCS2A01G301400 chr4D 89.518 353 32 3 2319 2666 364375095 364375447 2.440000e-120 442
15 TraesCS2A01G301400 chr4D 90.588 170 16 0 2127 2296 125689900 125690069 2.670000e-55 226
16 TraesCS2A01G301400 chr4D 89.655 174 15 3 2127 2299 22991674 22991845 4.470000e-53 219
17 TraesCS2A01G301400 chr7D 89.235 353 28 6 2319 2666 222465953 222466300 1.470000e-117 433
18 TraesCS2A01G301400 chr1D 89.143 350 32 5 2322 2666 419639416 419639068 5.270000e-117 431
19 TraesCS2A01G301400 chr1D 88.952 353 32 4 2319 2666 336628014 336628364 1.900000e-116 429
20 TraesCS2A01G301400 chr1D 90.341 176 17 0 2124 2299 10615093 10615268 5.740000e-57 231
21 TraesCS2A01G301400 chr1D 92.661 109 5 3 1695 1801 416852151 416852044 1.280000e-33 154
22 TraesCS2A01G301400 chr6D 87.845 362 38 4 2310 2666 449665646 449666006 1.140000e-113 420
23 TraesCS2A01G301400 chr5B 92.899 169 12 0 2130 2298 142662010 142662178 2.050000e-61 246
24 TraesCS2A01G301400 chrUn 90.341 176 17 0 2124 2299 295598654 295598829 5.740000e-57 231
25 TraesCS2A01G301400 chrUn 91.589 107 5 4 1707 1811 325927267 325927163 7.690000e-31 145
26 TraesCS2A01G301400 chr3A 90.000 170 17 0 2130 2299 477706340 477706171 1.240000e-53 220
27 TraesCS2A01G301400 chr5D 93.333 105 7 0 1700 1804 322375840 322375736 3.550000e-34 156
28 TraesCS2A01G301400 chr4B 96.774 93 3 0 1700 1792 630098836 630098744 3.550000e-34 156
29 TraesCS2A01G301400 chr4B 91.589 107 5 4 1707 1811 373351583 373351687 7.690000e-31 145
30 TraesCS2A01G301400 chr7A 94.000 100 4 2 1706 1805 451586800 451586897 1.650000e-32 150
31 TraesCS2A01G301400 chr7B 89.565 115 7 5 1691 1803 371219713 371219824 9.950000e-30 141


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G301400 chr2A 516430698 516433363 2665 False 4924.000000 4924 100.000000 1 2666 1 chr2A.!!$F2 2665
1 TraesCS2A01G301400 chr2D 382178812 382180766 1954 False 1364.500000 2394 92.245500 1 2025 2 chr2D.!!$F3 2024
2 TraesCS2A01G301400 chr2B 453030224 453033184 2960 False 972.666667 2379 92.875667 1 2317 3 chr2B.!!$F1 2316

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
114 115 0.108585 TCCTCCATTAATGAGCCGGC 59.891 55.000 21.89 21.89 0.00 6.13 F
128 129 0.596859 GCCGGCGTGTCTATTCCTAC 60.597 60.000 12.58 0.00 0.00 3.18 F
132 133 1.068741 GGCGTGTCTATTCCTACCAGG 59.931 57.143 0.00 0.00 36.46 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1059 1078 0.250124 CGCTGGTCTTGTTGTACCCA 60.250 55.000 0.0 0.0 34.69 4.51 R
1301 1344 0.875059 GGTGCTGGACTTGTTGTAGC 59.125 55.000 0.0 0.0 32.42 3.58 R
2084 2955 1.344763 GGAGGGAGTGGAATATGACCG 59.655 57.143 0.0 0.0 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.448093 TGCCCACCAGAATAATTGTCA 57.552 42.857 0.00 0.00 0.00 3.58
71 72 0.109412 GCAGCATTGCTTCCACTGAC 60.109 55.000 8.83 0.00 46.95 3.51
79 80 1.771854 TGCTTCCACTGACCTAACCAA 59.228 47.619 0.00 0.00 0.00 3.67
114 115 0.108585 TCCTCCATTAATGAGCCGGC 59.891 55.000 21.89 21.89 0.00 6.13
127 128 0.754217 AGCCGGCGTGTCTATTCCTA 60.754 55.000 23.20 0.00 0.00 2.94
128 129 0.596859 GCCGGCGTGTCTATTCCTAC 60.597 60.000 12.58 0.00 0.00 3.18
132 133 1.068741 GGCGTGTCTATTCCTACCAGG 59.931 57.143 0.00 0.00 36.46 4.45
150 151 2.887152 CAGGCACCTTTCTGCTTAAAGT 59.113 45.455 9.52 0.00 37.33 2.66
194 195 7.696992 GGAATTTCTCCTCTCTATCGTATCT 57.303 40.000 0.00 0.00 41.61 1.98
195 196 7.758495 GGAATTTCTCCTCTCTATCGTATCTC 58.242 42.308 0.00 0.00 41.61 2.75
232 233 8.517878 CCAAAGAAAGATCTTATGTGTCAACAT 58.482 33.333 8.75 0.00 45.19 2.71
290 291 2.287393 ACGATGTGCTGCGTGTATAA 57.713 45.000 0.00 0.00 39.56 0.98
299 300 4.963953 GTGCTGCGTGTATAATGAATTCAC 59.036 41.667 11.07 0.00 33.71 3.18
357 360 8.043710 GCTAATGGTCTATACCTGCATCTTAAT 58.956 37.037 0.00 0.00 46.91 1.40
358 361 9.950496 CTAATGGTCTATACCTGCATCTTAATT 57.050 33.333 0.00 0.00 46.91 1.40
359 362 8.854614 AATGGTCTATACCTGCATCTTAATTC 57.145 34.615 0.00 0.00 46.91 2.17
360 363 7.618019 TGGTCTATACCTGCATCTTAATTCT 57.382 36.000 0.00 0.00 46.91 2.40
361 364 8.034313 TGGTCTATACCTGCATCTTAATTCTT 57.966 34.615 0.00 0.00 46.91 2.52
362 365 9.154632 TGGTCTATACCTGCATCTTAATTCTTA 57.845 33.333 0.00 0.00 46.91 2.10
363 366 9.998106 GGTCTATACCTGCATCTTAATTCTTAA 57.002 33.333 0.00 0.00 43.08 1.85
411 414 1.473677 GTGCTGATGCTGCAAACCATA 59.526 47.619 6.36 0.00 39.78 2.74
435 438 7.775053 ATGTTGGGAGTGAGCTTTTATTTTA 57.225 32.000 0.00 0.00 0.00 1.52
542 545 5.873179 TGTAGTGCATAAACCTGCTTTAC 57.127 39.130 0.00 1.79 42.75 2.01
604 621 3.566351 GACCCATCCTTTCAATAAGGGG 58.434 50.000 0.00 0.00 39.15 4.79
633 650 9.913310 TGATATTTCCCATGTATGTTTAGTTGA 57.087 29.630 0.00 0.00 0.00 3.18
689 706 7.982761 TTGGAAATTTTGAATGATTGAAGGG 57.017 32.000 0.00 0.00 0.00 3.95
729 748 1.202348 TGTTTTTGTGGGCACATGTCG 60.202 47.619 0.00 0.00 41.52 4.35
734 753 4.639906 TGGGCACATGTCGCTGCA 62.640 61.111 16.34 0.00 34.90 4.41
835 854 6.298361 AGTGTGCATGATATTAGCCACATAA 58.702 36.000 0.00 0.00 34.26 1.90
941 960 6.040166 CCTCCTACCGTATTGCTTCTTAGTAA 59.960 42.308 0.00 0.00 0.00 2.24
1026 1045 1.202463 GGTGAGTATGATCGCAGCAGT 60.202 52.381 0.00 0.00 36.12 4.40
1059 1078 3.550974 ACAGGCAGTGACGAAGGT 58.449 55.556 0.00 0.00 0.00 3.50
1557 1600 2.099921 GTCCAGCACTGATGACGACTAT 59.900 50.000 0.00 0.00 0.00 2.12
1566 1609 4.769488 ACTGATGACGACTATGATGGCTAT 59.231 41.667 0.00 0.00 0.00 2.97
1675 1718 7.568497 GCTCTGATGATTACTAGACAAAATCGC 60.568 40.741 0.00 0.00 33.28 4.58
1709 1752 4.695455 AGTGTGTTTGCGATGCTAAATACT 59.305 37.500 0.00 0.00 31.68 2.12
1710 1753 5.022021 GTGTGTTTGCGATGCTAAATACTC 58.978 41.667 0.00 7.13 31.68 2.59
1711 1754 4.094294 TGTGTTTGCGATGCTAAATACTCC 59.906 41.667 0.00 0.00 31.68 3.85
1712 1755 3.625764 TGTTTGCGATGCTAAATACTCCC 59.374 43.478 0.00 0.00 0.00 4.30
1713 1756 3.838244 TTGCGATGCTAAATACTCCCT 57.162 42.857 0.00 0.00 0.00 4.20
1714 1757 3.386768 TGCGATGCTAAATACTCCCTC 57.613 47.619 0.00 0.00 0.00 4.30
1715 1758 2.037251 TGCGATGCTAAATACTCCCTCC 59.963 50.000 0.00 0.00 0.00 4.30
1716 1759 2.927014 GCGATGCTAAATACTCCCTCCG 60.927 54.545 0.00 0.00 0.00 4.63
1717 1760 2.296471 CGATGCTAAATACTCCCTCCGT 59.704 50.000 0.00 0.00 0.00 4.69
1718 1761 3.504906 CGATGCTAAATACTCCCTCCGTA 59.495 47.826 0.00 0.00 0.00 4.02
1719 1762 4.022589 CGATGCTAAATACTCCCTCCGTAA 60.023 45.833 0.00 0.00 0.00 3.18
1720 1763 5.508489 CGATGCTAAATACTCCCTCCGTAAA 60.508 44.000 0.00 0.00 0.00 2.01
1721 1764 5.014808 TGCTAAATACTCCCTCCGTAAAC 57.985 43.478 0.00 0.00 0.00 2.01
1722 1765 4.713321 TGCTAAATACTCCCTCCGTAAACT 59.287 41.667 0.00 0.00 0.00 2.66
1723 1766 5.893255 TGCTAAATACTCCCTCCGTAAACTA 59.107 40.000 0.00 0.00 0.00 2.24
1724 1767 6.380846 TGCTAAATACTCCCTCCGTAAACTAA 59.619 38.462 0.00 0.00 0.00 2.24
1725 1768 7.070322 TGCTAAATACTCCCTCCGTAAACTAAT 59.930 37.037 0.00 0.00 0.00 1.73
1726 1769 8.579863 GCTAAATACTCCCTCCGTAAACTAATA 58.420 37.037 0.00 0.00 0.00 0.98
1732 1775 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
1733 1776 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
1734 1777 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
1735 1778 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
1736 1779 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
1737 1780 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
1738 1781 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
1739 1782 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
1740 1783 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
1787 1830 9.710818 ACACTCTTATATTAGTTTACAGAGGGA 57.289 33.333 2.59 0.00 34.50 4.20
1789 1832 9.939424 ACTCTTATATTAGTTTACAGAGGGAGT 57.061 33.333 0.00 0.00 32.21 3.85
1951 2818 5.192176 TGAGTGTGTATATGTACCCGTGTA 58.808 41.667 0.00 0.00 0.00 2.90
1979 2850 0.815213 TTGCTGTCCATCTATGCGCC 60.815 55.000 4.18 0.00 0.00 6.53
2021 2892 6.126940 ACACTTTATCATGTCTGTAGCTGGAT 60.127 38.462 0.00 0.00 0.00 3.41
2026 2897 9.929180 TTTATCATGTCTGTAGCTGGATATAAC 57.071 33.333 0.00 0.00 0.00 1.89
2027 2898 6.013842 TCATGTCTGTAGCTGGATATAACG 57.986 41.667 0.00 0.00 0.00 3.18
2028 2899 5.535030 TCATGTCTGTAGCTGGATATAACGT 59.465 40.000 0.00 0.00 0.00 3.99
2029 2900 5.847111 TGTCTGTAGCTGGATATAACGTT 57.153 39.130 5.88 5.88 0.00 3.99
2030 2901 6.947644 TGTCTGTAGCTGGATATAACGTTA 57.052 37.500 11.02 11.02 0.00 3.18
2031 2902 6.732154 TGTCTGTAGCTGGATATAACGTTAC 58.268 40.000 10.81 0.00 0.00 2.50
2032 2903 6.544931 TGTCTGTAGCTGGATATAACGTTACT 59.455 38.462 10.81 3.95 0.00 2.24
2033 2904 7.076983 GTCTGTAGCTGGATATAACGTTACTC 58.923 42.308 10.81 10.32 0.00 2.59
2034 2905 6.206243 TCTGTAGCTGGATATAACGTTACTCC 59.794 42.308 22.95 22.95 0.00 3.85
2035 2906 5.829391 TGTAGCTGGATATAACGTTACTCCA 59.171 40.000 27.30 27.30 34.88 3.86
2036 2907 6.492429 TGTAGCTGGATATAACGTTACTCCAT 59.508 38.462 28.42 21.30 35.55 3.41
2037 2908 6.026947 AGCTGGATATAACGTTACTCCATC 57.973 41.667 28.42 25.53 35.55 3.51
2038 2909 5.047235 AGCTGGATATAACGTTACTCCATCC 60.047 44.000 28.42 24.93 35.55 3.51
2039 2910 5.381174 TGGATATAACGTTACTCCATCCG 57.619 43.478 26.25 0.00 34.47 4.18
2040 2911 4.828939 TGGATATAACGTTACTCCATCCGT 59.171 41.667 26.25 7.25 34.47 4.69
2041 2912 5.048504 TGGATATAACGTTACTCCATCCGTC 60.049 44.000 26.25 10.62 34.47 4.79
2042 2913 3.722728 ATAACGTTACTCCATCCGTCC 57.277 47.619 10.81 0.00 32.30 4.79
2043 2914 0.533951 AACGTTACTCCATCCGTCCC 59.466 55.000 0.00 0.00 32.30 4.46
2044 2915 1.065273 CGTTACTCCATCCGTCCCG 59.935 63.158 0.00 0.00 0.00 5.14
2045 2916 1.378882 CGTTACTCCATCCGTCCCGA 61.379 60.000 0.00 0.00 0.00 5.14
2046 2917 0.819582 GTTACTCCATCCGTCCCGAA 59.180 55.000 0.00 0.00 0.00 4.30
2047 2918 1.205417 GTTACTCCATCCGTCCCGAAA 59.795 52.381 0.00 0.00 0.00 3.46
2048 2919 1.559368 TACTCCATCCGTCCCGAAAA 58.441 50.000 0.00 0.00 0.00 2.29
2049 2920 0.249398 ACTCCATCCGTCCCGAAAAG 59.751 55.000 0.00 0.00 0.00 2.27
2050 2921 0.462047 CTCCATCCGTCCCGAAAAGG 60.462 60.000 0.00 0.00 40.63 3.11
2051 2922 1.196104 TCCATCCGTCCCGAAAAGGT 61.196 55.000 0.00 0.00 38.74 3.50
2052 2923 0.322187 CCATCCGTCCCGAAAAGGTT 60.322 55.000 0.00 0.00 38.74 3.50
2053 2924 0.802494 CATCCGTCCCGAAAAGGTTG 59.198 55.000 0.00 0.00 38.74 3.77
2054 2925 0.958876 ATCCGTCCCGAAAAGGTTGC 60.959 55.000 0.00 0.00 38.74 4.17
2055 2926 2.622962 CCGTCCCGAAAAGGTTGCC 61.623 63.158 0.00 0.00 38.74 4.52
2056 2927 1.599797 CGTCCCGAAAAGGTTGCCT 60.600 57.895 0.00 0.00 38.74 4.75
2105 2976 1.344763 GGTCATATTCCACTCCCTCCG 59.655 57.143 0.00 0.00 0.00 4.63
2128 2999 5.188194 GTTTCACAATGTAGCGCGTATAAG 58.812 41.667 8.43 0.00 0.00 1.73
2131 3002 3.181774 CACAATGTAGCGCGTATAAGGTC 59.818 47.826 8.43 0.00 0.00 3.85
2145 3016 8.598075 CGCGTATAAGGTCAAACTTTATAAACT 58.402 33.333 0.00 0.00 35.37 2.66
2224 3095 7.644551 CCTTAGATACATCACAAGACGTACTTC 59.355 40.741 0.00 0.00 36.61 3.01
2230 3101 6.640518 ACATCACAAGACGTACTTCCATATT 58.359 36.000 0.00 0.00 36.61 1.28
2317 3188 7.112122 AGTTTGAAAGTCCTGCATATGTATGA 58.888 34.615 4.29 0.00 35.75 2.15
2318 3189 7.611467 AGTTTGAAAGTCCTGCATATGTATGAA 59.389 33.333 4.29 0.00 35.75 2.57
2319 3190 6.925610 TGAAAGTCCTGCATATGTATGAAC 57.074 37.500 4.29 0.00 35.75 3.18
2320 3191 5.822519 TGAAAGTCCTGCATATGTATGAACC 59.177 40.000 4.29 0.00 35.75 3.62
2321 3192 5.372343 AAGTCCTGCATATGTATGAACCA 57.628 39.130 4.29 0.00 35.75 3.67
2322 3193 4.965814 AGTCCTGCATATGTATGAACCAG 58.034 43.478 4.29 1.24 35.75 4.00
2323 3194 3.499918 GTCCTGCATATGTATGAACCAGC 59.500 47.826 4.29 0.00 35.75 4.85
2324 3195 3.136260 TCCTGCATATGTATGAACCAGCA 59.864 43.478 4.29 0.00 35.75 4.41
2325 3196 3.884693 CCTGCATATGTATGAACCAGCAA 59.115 43.478 4.29 0.00 35.75 3.91
2326 3197 4.023450 CCTGCATATGTATGAACCAGCAAG 60.023 45.833 4.29 0.00 35.75 4.01
2327 3198 4.779696 TGCATATGTATGAACCAGCAAGA 58.220 39.130 4.29 0.00 35.75 3.02
2328 3199 5.379187 TGCATATGTATGAACCAGCAAGAT 58.621 37.500 4.29 0.00 35.75 2.40
2329 3200 5.239963 TGCATATGTATGAACCAGCAAGATG 59.760 40.000 4.29 0.00 35.75 2.90
2330 3201 5.696822 CATATGTATGAACCAGCAAGATGC 58.303 41.667 0.00 0.00 38.66 3.91
2331 3202 2.368439 TGTATGAACCAGCAAGATGCC 58.632 47.619 0.00 0.00 46.52 4.40
2332 3203 1.678101 GTATGAACCAGCAAGATGCCC 59.322 52.381 0.00 0.00 46.52 5.36
2333 3204 1.033746 ATGAACCAGCAAGATGCCCG 61.034 55.000 0.00 0.00 46.52 6.13
2334 3205 1.675641 GAACCAGCAAGATGCCCGT 60.676 57.895 0.00 0.00 46.52 5.28
2335 3206 0.392461 GAACCAGCAAGATGCCCGTA 60.392 55.000 0.00 0.00 46.52 4.02
2336 3207 0.676782 AACCAGCAAGATGCCCGTAC 60.677 55.000 0.00 0.00 46.52 3.67
2337 3208 1.078497 CCAGCAAGATGCCCGTACA 60.078 57.895 0.00 0.00 46.52 2.90
2338 3209 0.464373 CCAGCAAGATGCCCGTACAT 60.464 55.000 0.00 0.00 46.52 2.29
2339 3210 1.382522 CAGCAAGATGCCCGTACATT 58.617 50.000 0.00 0.00 46.52 2.71
2340 3211 1.064505 CAGCAAGATGCCCGTACATTG 59.935 52.381 0.00 0.00 46.52 2.82
2341 3212 0.248621 GCAAGATGCCCGTACATTGC 60.249 55.000 0.00 0.00 37.42 3.56
2342 3213 1.093972 CAAGATGCCCGTACATTGCA 58.906 50.000 3.76 3.76 39.68 4.08
2343 3214 1.094785 AAGATGCCCGTACATTGCAC 58.905 50.000 3.39 0.00 37.92 4.57
2344 3215 1.089481 AGATGCCCGTACATTGCACG 61.089 55.000 2.35 2.35 37.92 5.34
2349 3220 4.270392 CGTACATTGCACGGGACA 57.730 55.556 1.35 0.00 35.78 4.02
2350 3221 2.762360 CGTACATTGCACGGGACAT 58.238 52.632 1.35 0.00 35.78 3.06
2351 3222 0.650512 CGTACATTGCACGGGACATC 59.349 55.000 1.35 0.00 35.78 3.06
2352 3223 1.732941 GTACATTGCACGGGACATCA 58.267 50.000 0.00 0.00 0.00 3.07
2353 3224 2.080693 GTACATTGCACGGGACATCAA 58.919 47.619 0.00 0.00 0.00 2.57
2354 3225 1.167851 ACATTGCACGGGACATCAAG 58.832 50.000 0.00 0.00 0.00 3.02
2355 3226 1.271325 ACATTGCACGGGACATCAAGA 60.271 47.619 0.00 0.00 0.00 3.02
2356 3227 2.019249 CATTGCACGGGACATCAAGAT 58.981 47.619 0.00 0.00 0.00 2.40
2357 3228 1.452110 TTGCACGGGACATCAAGATG 58.548 50.000 8.45 8.45 44.15 2.90
2358 3229 1.026182 TGCACGGGACATCAAGATGC 61.026 55.000 9.85 3.48 42.39 3.91
2359 3230 1.026182 GCACGGGACATCAAGATGCA 61.026 55.000 9.85 0.00 42.39 3.96
2360 3231 1.671979 CACGGGACATCAAGATGCAT 58.328 50.000 9.85 0.00 42.39 3.96
2361 3232 2.019249 CACGGGACATCAAGATGCATT 58.981 47.619 9.85 0.00 42.39 3.56
2362 3233 2.424601 CACGGGACATCAAGATGCATTT 59.575 45.455 9.85 0.00 42.39 2.32
2363 3234 3.091545 ACGGGACATCAAGATGCATTTT 58.908 40.909 9.85 0.00 42.39 1.82
2364 3235 3.511146 ACGGGACATCAAGATGCATTTTT 59.489 39.130 9.85 0.00 42.39 1.94
2365 3236 4.704540 ACGGGACATCAAGATGCATTTTTA 59.295 37.500 9.85 0.00 42.39 1.52
2366 3237 5.360714 ACGGGACATCAAGATGCATTTTTAT 59.639 36.000 9.85 0.00 42.39 1.40
2367 3238 6.127366 ACGGGACATCAAGATGCATTTTTATT 60.127 34.615 9.85 0.00 42.39 1.40
2368 3239 7.068103 ACGGGACATCAAGATGCATTTTTATTA 59.932 33.333 9.85 0.00 42.39 0.98
2369 3240 8.084073 CGGGACATCAAGATGCATTTTTATTAT 58.916 33.333 9.85 0.00 42.39 1.28
2396 3267 4.038271 ACCTGTTGTGATTGATCCATGT 57.962 40.909 0.00 0.00 0.00 3.21
2397 3268 3.760151 ACCTGTTGTGATTGATCCATGTG 59.240 43.478 0.00 0.00 0.00 3.21
2398 3269 3.129813 CCTGTTGTGATTGATCCATGTGG 59.870 47.826 0.00 0.00 0.00 4.17
2399 3270 3.090790 TGTTGTGATTGATCCATGTGGG 58.909 45.455 0.00 0.00 35.41 4.61
2412 3283 5.191727 TCCATGTGGGAGTAATTTCATGT 57.808 39.130 0.00 0.00 42.15 3.21
2413 3284 6.320434 TCCATGTGGGAGTAATTTCATGTA 57.680 37.500 0.00 0.00 42.15 2.29
2414 3285 6.910191 TCCATGTGGGAGTAATTTCATGTAT 58.090 36.000 0.00 0.00 42.15 2.29
2415 3286 8.040002 TCCATGTGGGAGTAATTTCATGTATA 57.960 34.615 0.00 0.00 42.15 1.47
2416 3287 8.498575 TCCATGTGGGAGTAATTTCATGTATAA 58.501 33.333 0.00 0.00 42.15 0.98
2417 3288 9.130661 CCATGTGGGAGTAATTTCATGTATAAA 57.869 33.333 0.00 0.00 40.01 1.40
2458 3329 7.560796 AAAAAGAGGAGAGATAAAGTGAGGA 57.439 36.000 0.00 0.00 0.00 3.71
2459 3330 6.790232 AAAGAGGAGAGATAAAGTGAGGAG 57.210 41.667 0.00 0.00 0.00 3.69
2460 3331 5.466127 AGAGGAGAGATAAAGTGAGGAGT 57.534 43.478 0.00 0.00 0.00 3.85
2461 3332 5.200483 AGAGGAGAGATAAAGTGAGGAGTG 58.800 45.833 0.00 0.00 0.00 3.51
2462 3333 4.285863 AGGAGAGATAAAGTGAGGAGTGG 58.714 47.826 0.00 0.00 0.00 4.00
2463 3334 3.386402 GGAGAGATAAAGTGAGGAGTGGG 59.614 52.174 0.00 0.00 0.00 4.61
2464 3335 2.769095 AGAGATAAAGTGAGGAGTGGGC 59.231 50.000 0.00 0.00 0.00 5.36
2465 3336 1.482593 AGATAAAGTGAGGAGTGGGCG 59.517 52.381 0.00 0.00 0.00 6.13
2466 3337 1.207329 GATAAAGTGAGGAGTGGGCGT 59.793 52.381 0.00 0.00 0.00 5.68
2467 3338 0.320374 TAAAGTGAGGAGTGGGCGTG 59.680 55.000 0.00 0.00 0.00 5.34
2468 3339 1.407656 AAAGTGAGGAGTGGGCGTGA 61.408 55.000 0.00 0.00 0.00 4.35
2469 3340 1.194781 AAGTGAGGAGTGGGCGTGAT 61.195 55.000 0.00 0.00 0.00 3.06
2470 3341 1.448540 GTGAGGAGTGGGCGTGATG 60.449 63.158 0.00 0.00 0.00 3.07
2471 3342 2.187946 GAGGAGTGGGCGTGATGG 59.812 66.667 0.00 0.00 0.00 3.51
2472 3343 2.607750 AGGAGTGGGCGTGATGGT 60.608 61.111 0.00 0.00 0.00 3.55
2473 3344 2.436646 GGAGTGGGCGTGATGGTG 60.437 66.667 0.00 0.00 0.00 4.17
2474 3345 2.662596 GAGTGGGCGTGATGGTGA 59.337 61.111 0.00 0.00 0.00 4.02
2475 3346 1.221840 GAGTGGGCGTGATGGTGAT 59.778 57.895 0.00 0.00 0.00 3.06
2476 3347 0.392998 GAGTGGGCGTGATGGTGATT 60.393 55.000 0.00 0.00 0.00 2.57
2477 3348 0.677731 AGTGGGCGTGATGGTGATTG 60.678 55.000 0.00 0.00 0.00 2.67
2478 3349 1.378382 TGGGCGTGATGGTGATTGG 60.378 57.895 0.00 0.00 0.00 3.16
2479 3350 1.378514 GGGCGTGATGGTGATTGGT 60.379 57.895 0.00 0.00 0.00 3.67
2480 3351 0.107410 GGGCGTGATGGTGATTGGTA 60.107 55.000 0.00 0.00 0.00 3.25
2481 3352 1.299541 GGCGTGATGGTGATTGGTAG 58.700 55.000 0.00 0.00 0.00 3.18
2482 3353 1.406887 GGCGTGATGGTGATTGGTAGT 60.407 52.381 0.00 0.00 0.00 2.73
2483 3354 1.933853 GCGTGATGGTGATTGGTAGTC 59.066 52.381 0.00 0.00 0.00 2.59
2484 3355 2.193447 CGTGATGGTGATTGGTAGTCG 58.807 52.381 0.00 0.00 0.00 4.18
2485 3356 2.550978 GTGATGGTGATTGGTAGTCGG 58.449 52.381 0.00 0.00 0.00 4.79
2486 3357 2.167693 GTGATGGTGATTGGTAGTCGGA 59.832 50.000 0.00 0.00 0.00 4.55
2487 3358 2.167693 TGATGGTGATTGGTAGTCGGAC 59.832 50.000 0.00 0.00 0.00 4.79
2488 3359 1.933021 TGGTGATTGGTAGTCGGACT 58.067 50.000 15.95 15.95 0.00 3.85
2489 3360 1.548719 TGGTGATTGGTAGTCGGACTG 59.451 52.381 20.58 0.00 0.00 3.51
2490 3361 1.822990 GGTGATTGGTAGTCGGACTGA 59.177 52.381 20.58 4.59 0.00 3.41
2491 3362 2.159226 GGTGATTGGTAGTCGGACTGAG 60.159 54.545 20.58 0.00 0.00 3.35
2492 3363 1.476891 TGATTGGTAGTCGGACTGAGC 59.523 52.381 20.58 13.52 0.00 4.26
2493 3364 1.476891 GATTGGTAGTCGGACTGAGCA 59.523 52.381 20.58 15.63 0.00 4.26
2494 3365 0.888619 TTGGTAGTCGGACTGAGCAG 59.111 55.000 20.58 0.00 0.00 4.24
2495 3366 0.037734 TGGTAGTCGGACTGAGCAGA 59.962 55.000 20.58 0.00 0.00 4.26
2496 3367 0.736053 GGTAGTCGGACTGAGCAGAG 59.264 60.000 20.58 0.00 0.00 3.35
2497 3368 0.736053 GTAGTCGGACTGAGCAGAGG 59.264 60.000 20.58 0.00 0.00 3.69
2498 3369 1.032657 TAGTCGGACTGAGCAGAGGC 61.033 60.000 20.58 0.00 41.61 4.70
2499 3370 2.283173 TCGGACTGAGCAGAGGCA 60.283 61.111 4.21 0.00 44.61 4.75
2500 3371 1.683707 TCGGACTGAGCAGAGGCAT 60.684 57.895 4.21 0.00 44.61 4.40
2501 3372 1.521010 CGGACTGAGCAGAGGCATG 60.521 63.158 4.21 0.00 44.61 4.06
2502 3373 1.153208 GGACTGAGCAGAGGCATGG 60.153 63.158 4.21 0.00 44.61 3.66
2503 3374 1.153208 GACTGAGCAGAGGCATGGG 60.153 63.158 4.21 0.00 44.61 4.00
2504 3375 2.192443 CTGAGCAGAGGCATGGGG 59.808 66.667 0.00 0.00 44.61 4.96
2505 3376 2.285592 TGAGCAGAGGCATGGGGA 60.286 61.111 0.00 0.00 44.61 4.81
2506 3377 1.695239 TGAGCAGAGGCATGGGGAT 60.695 57.895 0.00 0.00 44.61 3.85
2507 3378 1.228184 GAGCAGAGGCATGGGGATG 60.228 63.158 0.00 0.00 44.61 3.51
2508 3379 2.203451 GCAGAGGCATGGGGATGG 60.203 66.667 0.00 0.00 40.72 3.51
2509 3380 2.760378 GCAGAGGCATGGGGATGGA 61.760 63.158 0.00 0.00 40.72 3.41
2510 3381 1.150081 CAGAGGCATGGGGATGGAC 59.850 63.158 0.00 0.00 0.00 4.02
2511 3382 2.111878 GAGGCATGGGGATGGACG 59.888 66.667 0.00 0.00 0.00 4.79
2512 3383 2.366837 AGGCATGGGGATGGACGA 60.367 61.111 0.00 0.00 0.00 4.20
2513 3384 2.203209 GGCATGGGGATGGACGAC 60.203 66.667 0.00 0.00 0.00 4.34
2514 3385 2.588877 GCATGGGGATGGACGACG 60.589 66.667 0.00 0.00 0.00 5.12
2515 3386 2.588877 CATGGGGATGGACGACGC 60.589 66.667 0.00 0.00 0.00 5.19
2516 3387 3.861797 ATGGGGATGGACGACGCC 61.862 66.667 0.00 0.00 39.15 5.68
2536 3407 3.449227 CAGCAGCCACCATGCCAG 61.449 66.667 0.00 0.00 44.97 4.85
2537 3408 3.654143 AGCAGCCACCATGCCAGA 61.654 61.111 0.00 0.00 44.97 3.86
2538 3409 2.441532 GCAGCCACCATGCCAGAT 60.442 61.111 0.00 0.00 37.73 2.90
2539 3410 2.056223 GCAGCCACCATGCCAGATT 61.056 57.895 0.00 0.00 37.73 2.40
2540 3411 1.813859 CAGCCACCATGCCAGATTG 59.186 57.895 0.00 0.00 0.00 2.67
2541 3412 0.968901 CAGCCACCATGCCAGATTGT 60.969 55.000 0.00 0.00 0.00 2.71
2542 3413 0.251922 AGCCACCATGCCAGATTGTT 60.252 50.000 0.00 0.00 0.00 2.83
2543 3414 0.174162 GCCACCATGCCAGATTGTTC 59.826 55.000 0.00 0.00 0.00 3.18
2544 3415 0.819582 CCACCATGCCAGATTGTTCC 59.180 55.000 0.00 0.00 0.00 3.62
2545 3416 1.548081 CACCATGCCAGATTGTTCCA 58.452 50.000 0.00 0.00 0.00 3.53
2546 3417 1.475280 CACCATGCCAGATTGTTCCAG 59.525 52.381 0.00 0.00 0.00 3.86
2547 3418 1.355381 ACCATGCCAGATTGTTCCAGA 59.645 47.619 0.00 0.00 0.00 3.86
2548 3419 2.022195 CCATGCCAGATTGTTCCAGAG 58.978 52.381 0.00 0.00 0.00 3.35
2549 3420 2.619849 CCATGCCAGATTGTTCCAGAGT 60.620 50.000 0.00 0.00 0.00 3.24
2550 3421 2.479566 TGCCAGATTGTTCCAGAGTC 57.520 50.000 0.00 0.00 0.00 3.36
2551 3422 1.980765 TGCCAGATTGTTCCAGAGTCT 59.019 47.619 0.00 0.00 0.00 3.24
2552 3423 2.373169 TGCCAGATTGTTCCAGAGTCTT 59.627 45.455 0.00 0.00 0.00 3.01
2553 3424 3.181440 TGCCAGATTGTTCCAGAGTCTTT 60.181 43.478 0.00 0.00 0.00 2.52
2554 3425 3.438434 GCCAGATTGTTCCAGAGTCTTTC 59.562 47.826 0.00 0.00 0.00 2.62
2555 3426 4.805609 GCCAGATTGTTCCAGAGTCTTTCT 60.806 45.833 0.00 0.00 36.25 2.52
2556 3427 5.312079 CCAGATTGTTCCAGAGTCTTTCTT 58.688 41.667 0.00 0.00 32.41 2.52
2557 3428 5.767168 CCAGATTGTTCCAGAGTCTTTCTTT 59.233 40.000 0.00 0.00 32.41 2.52
2558 3429 6.264067 CCAGATTGTTCCAGAGTCTTTCTTTT 59.736 38.462 0.00 0.00 32.41 2.27
2559 3430 7.201857 CCAGATTGTTCCAGAGTCTTTCTTTTT 60.202 37.037 0.00 0.00 32.41 1.94
2560 3431 8.840321 CAGATTGTTCCAGAGTCTTTCTTTTTA 58.160 33.333 0.00 0.00 32.41 1.52
2561 3432 9.408648 AGATTGTTCCAGAGTCTTTCTTTTTAA 57.591 29.630 0.00 0.00 32.41 1.52
2564 3435 9.801873 TTGTTCCAGAGTCTTTCTTTTTAATTG 57.198 29.630 0.00 0.00 32.41 2.32
2565 3436 7.920682 TGTTCCAGAGTCTTTCTTTTTAATTGC 59.079 33.333 0.00 0.00 32.41 3.56
2566 3437 7.823745 TCCAGAGTCTTTCTTTTTAATTGCT 57.176 32.000 0.00 0.00 32.41 3.91
2567 3438 7.875971 TCCAGAGTCTTTCTTTTTAATTGCTC 58.124 34.615 0.00 0.00 32.41 4.26
2568 3439 7.502226 TCCAGAGTCTTTCTTTTTAATTGCTCA 59.498 33.333 0.00 0.00 32.41 4.26
2569 3440 8.137437 CCAGAGTCTTTCTTTTTAATTGCTCAA 58.863 33.333 0.00 0.00 32.41 3.02
2570 3441 8.962111 CAGAGTCTTTCTTTTTAATTGCTCAAC 58.038 33.333 0.00 0.00 32.41 3.18
2571 3442 8.686334 AGAGTCTTTCTTTTTAATTGCTCAACA 58.314 29.630 0.00 0.00 29.61 3.33
2572 3443 9.301153 GAGTCTTTCTTTTTAATTGCTCAACAA 57.699 29.630 0.00 0.00 44.01 2.83
2595 3466 7.872881 CAATGAGATTGTGGGAGATAAGAATG 58.127 38.462 0.00 0.00 35.57 2.67
2596 3467 6.813293 TGAGATTGTGGGAGATAAGAATGA 57.187 37.500 0.00 0.00 0.00 2.57
2597 3468 7.199167 TGAGATTGTGGGAGATAAGAATGAA 57.801 36.000 0.00 0.00 0.00 2.57
2598 3469 7.809238 TGAGATTGTGGGAGATAAGAATGAAT 58.191 34.615 0.00 0.00 0.00 2.57
2599 3470 7.718314 TGAGATTGTGGGAGATAAGAATGAATG 59.282 37.037 0.00 0.00 0.00 2.67
2600 3471 7.809238 AGATTGTGGGAGATAAGAATGAATGA 58.191 34.615 0.00 0.00 0.00 2.57
2601 3472 7.937942 AGATTGTGGGAGATAAGAATGAATGAG 59.062 37.037 0.00 0.00 0.00 2.90
2602 3473 5.933617 TGTGGGAGATAAGAATGAATGAGG 58.066 41.667 0.00 0.00 0.00 3.86
2603 3474 5.667172 TGTGGGAGATAAGAATGAATGAGGA 59.333 40.000 0.00 0.00 0.00 3.71
2604 3475 6.158520 TGTGGGAGATAAGAATGAATGAGGAA 59.841 38.462 0.00 0.00 0.00 3.36
2605 3476 7.056635 GTGGGAGATAAGAATGAATGAGGAAA 58.943 38.462 0.00 0.00 0.00 3.13
2606 3477 7.723172 GTGGGAGATAAGAATGAATGAGGAAAT 59.277 37.037 0.00 0.00 0.00 2.17
2607 3478 7.722728 TGGGAGATAAGAATGAATGAGGAAATG 59.277 37.037 0.00 0.00 0.00 2.32
2608 3479 7.309073 GGGAGATAAGAATGAATGAGGAAATGC 60.309 40.741 0.00 0.00 0.00 3.56
2609 3480 7.309073 GGAGATAAGAATGAATGAGGAAATGCC 60.309 40.741 0.00 0.00 0.00 4.40
2620 3491 2.818130 GGAAATGCCTTGTCTGCAAA 57.182 45.000 0.00 0.00 42.92 3.68
2621 3492 3.323751 GGAAATGCCTTGTCTGCAAAT 57.676 42.857 0.00 0.00 42.92 2.32
2622 3493 4.454728 GGAAATGCCTTGTCTGCAAATA 57.545 40.909 0.00 0.00 42.92 1.40
2623 3494 5.014808 GGAAATGCCTTGTCTGCAAATAT 57.985 39.130 0.00 0.00 42.92 1.28
2624 3495 4.807304 GGAAATGCCTTGTCTGCAAATATG 59.193 41.667 0.00 0.00 42.92 1.78
2625 3496 4.395959 AATGCCTTGTCTGCAAATATGG 57.604 40.909 0.00 0.00 42.92 2.74
2626 3497 3.084536 TGCCTTGTCTGCAAATATGGA 57.915 42.857 0.00 0.00 35.40 3.41
2627 3498 3.018856 TGCCTTGTCTGCAAATATGGAG 58.981 45.455 0.00 0.00 45.62 3.86
2636 3507 3.396560 TGCAAATATGGAGAGAGATGCG 58.603 45.455 0.00 0.00 35.40 4.73
2637 3508 2.740981 GCAAATATGGAGAGAGATGCGG 59.259 50.000 0.00 0.00 0.00 5.69
2638 3509 3.332919 CAAATATGGAGAGAGATGCGGG 58.667 50.000 0.00 0.00 0.00 6.13
2639 3510 2.317371 ATATGGAGAGAGATGCGGGT 57.683 50.000 0.00 0.00 0.00 5.28
2640 3511 2.971901 TATGGAGAGAGATGCGGGTA 57.028 50.000 0.00 0.00 0.00 3.69
2641 3512 2.317371 ATGGAGAGAGATGCGGGTAT 57.683 50.000 0.00 0.00 0.00 2.73
2642 3513 1.621992 TGGAGAGAGATGCGGGTATC 58.378 55.000 0.00 0.00 0.00 2.24
2643 3514 1.145945 TGGAGAGAGATGCGGGTATCT 59.854 52.381 0.00 0.00 40.02 1.98
2644 3515 2.243810 GGAGAGAGATGCGGGTATCTT 58.756 52.381 0.81 0.00 37.53 2.40
2645 3516 2.630580 GGAGAGAGATGCGGGTATCTTT 59.369 50.000 0.81 0.00 37.53 2.52
2646 3517 3.070302 GGAGAGAGATGCGGGTATCTTTT 59.930 47.826 0.81 0.00 37.53 2.27
2647 3518 4.443598 GGAGAGAGATGCGGGTATCTTTTT 60.444 45.833 0.81 0.00 37.53 1.94
2648 3519 4.446371 AGAGAGATGCGGGTATCTTTTTG 58.554 43.478 0.81 0.00 37.53 2.44
2649 3520 4.080863 AGAGAGATGCGGGTATCTTTTTGT 60.081 41.667 0.81 0.00 37.53 2.83
2650 3521 5.128827 AGAGAGATGCGGGTATCTTTTTGTA 59.871 40.000 0.81 0.00 37.53 2.41
2651 3522 5.741011 AGAGATGCGGGTATCTTTTTGTAA 58.259 37.500 0.81 0.00 37.53 2.41
2652 3523 6.177610 AGAGATGCGGGTATCTTTTTGTAAA 58.822 36.000 0.81 0.00 37.53 2.01
2653 3524 6.657541 AGAGATGCGGGTATCTTTTTGTAAAA 59.342 34.615 0.81 0.00 37.53 1.52
2654 3525 7.339466 AGAGATGCGGGTATCTTTTTGTAAAAT 59.661 33.333 0.81 0.00 37.53 1.82
2655 3526 7.836842 AGATGCGGGTATCTTTTTGTAAAATT 58.163 30.769 0.00 0.00 33.74 1.82
2656 3527 7.759433 AGATGCGGGTATCTTTTTGTAAAATTG 59.241 33.333 0.00 0.00 33.74 2.32
2657 3528 5.635700 TGCGGGTATCTTTTTGTAAAATTGC 59.364 36.000 0.00 0.00 0.00 3.56
2658 3529 5.062934 GCGGGTATCTTTTTGTAAAATTGCC 59.937 40.000 0.00 0.00 0.00 4.52
2659 3530 6.159988 CGGGTATCTTTTTGTAAAATTGCCA 58.840 36.000 0.00 0.00 0.00 4.92
2660 3531 6.816140 CGGGTATCTTTTTGTAAAATTGCCAT 59.184 34.615 0.00 0.00 0.00 4.40
2661 3532 7.976734 CGGGTATCTTTTTGTAAAATTGCCATA 59.023 33.333 0.00 0.00 0.00 2.74
2662 3533 9.313118 GGGTATCTTTTTGTAAAATTGCCATAG 57.687 33.333 0.00 0.00 0.00 2.23
2663 3534 9.869757 GGTATCTTTTTGTAAAATTGCCATAGT 57.130 29.630 0.00 0.00 0.00 2.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 9.459640 CAAAGCATATTCTGACAATTATTCTGG 57.540 33.333 0.00 0.00 0.00 3.86
71 72 5.773176 ACAGTTTAACTTCCCATTGGTTAGG 59.227 40.000 1.20 0.00 0.00 2.69
79 80 3.655777 TGGAGGACAGTTTAACTTCCCAT 59.344 43.478 16.77 5.70 30.65 4.00
114 115 1.754803 TGCCTGGTAGGAATAGACACG 59.245 52.381 0.00 0.00 37.67 4.49
127 128 0.771127 TAAGCAGAAAGGTGCCTGGT 59.229 50.000 0.00 0.00 45.20 4.00
128 129 1.909700 TTAAGCAGAAAGGTGCCTGG 58.090 50.000 0.00 0.00 45.20 4.45
132 133 2.029918 CCCACTTTAAGCAGAAAGGTGC 60.030 50.000 13.15 0.00 44.35 5.01
192 193 2.003830 TCTTTGGGGGAGAGAGAGAGA 58.996 52.381 0.00 0.00 0.00 3.10
193 194 2.541233 TCTTTGGGGGAGAGAGAGAG 57.459 55.000 0.00 0.00 0.00 3.20
194 195 3.177228 CTTTCTTTGGGGGAGAGAGAGA 58.823 50.000 0.00 0.00 29.38 3.10
195 196 3.177228 TCTTTCTTTGGGGGAGAGAGAG 58.823 50.000 0.00 0.00 31.64 3.20
290 291 6.095300 TGCCTACAAATCAATCGTGAATTCAT 59.905 34.615 12.12 0.00 37.30 2.57
299 300 7.471721 TCAAATAAGTGCCTACAAATCAATCG 58.528 34.615 0.00 0.00 0.00 3.34
380 383 5.221501 TGCAGCATCAGCACTACATCTATAA 60.222 40.000 0.00 0.00 45.49 0.98
411 414 6.670695 AAAATAAAAGCTCACTCCCAACAT 57.329 33.333 0.00 0.00 0.00 2.71
420 423 7.136772 AGAACACCGTTAAAATAAAAGCTCAC 58.863 34.615 0.00 0.00 0.00 3.51
435 438 3.536956 TTGTGAGAAGAGAACACCGTT 57.463 42.857 0.00 0.00 34.18 4.44
604 621 9.561069 ACTAAACATACATGGGAAATATCACTC 57.439 33.333 0.00 0.00 0.00 3.51
647 664 9.683870 AATTTCCAATGCACACCATATTATTTT 57.316 25.926 0.00 0.00 32.67 1.82
835 854 3.624777 ACAAGGCTCCATCAATCGAAAT 58.375 40.909 0.00 0.00 0.00 2.17
941 960 2.008268 GCTGCTTGGTTGCACTGTGT 62.008 55.000 9.86 0.00 38.12 3.72
1026 1045 0.320374 CTGTGCCTGACCTTCCGTAA 59.680 55.000 0.00 0.00 0.00 3.18
1059 1078 0.250124 CGCTGGTCTTGTTGTACCCA 60.250 55.000 0.00 0.00 34.69 4.51
1125 1144 3.736433 CGTTGCTGGATTTGTTGAAACCA 60.736 43.478 0.00 0.00 0.00 3.67
1181 1224 2.434336 TCAGTGCTGGACTTGTTGTAGT 59.566 45.455 0.00 0.00 29.75 2.73
1300 1343 1.543429 GGTGCTGGACTTGTTGTAGCT 60.543 52.381 0.00 0.00 32.86 3.32
1301 1344 0.875059 GGTGCTGGACTTGTTGTAGC 59.125 55.000 0.00 0.00 32.42 3.58
1566 1609 3.387091 TCGGCGCTGGGCTTCTTA 61.387 61.111 17.88 0.00 42.94 2.10
1576 1619 3.054503 ACTGTACTCGTCGGCGCT 61.055 61.111 3.52 0.00 38.14 5.92
1675 1718 2.791158 GCAAACACACTCACTTTCACGG 60.791 50.000 0.00 0.00 0.00 4.94
1709 1752 6.072286 CGCTCTTATATTAGTTTACGGAGGGA 60.072 42.308 0.00 0.00 34.63 4.20
1710 1753 6.091437 CGCTCTTATATTAGTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
1711 1754 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
1712 1755 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
1713 1756 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
1714 1757 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
1761 1804 9.710818 TCCCTCTGTAAACTAATATAAGAGTGT 57.289 33.333 0.00 0.00 0.00 3.55
1763 1806 9.939424 ACTCCCTCTGTAAACTAATATAAGAGT 57.061 33.333 0.00 0.00 0.00 3.24
1767 1810 9.632638 ACGTACTCCCTCTGTAAACTAATATAA 57.367 33.333 0.00 0.00 0.00 0.98
1769 1812 9.804977 ATACGTACTCCCTCTGTAAACTAATAT 57.195 33.333 0.00 0.00 0.00 1.28
1770 1813 9.060347 CATACGTACTCCCTCTGTAAACTAATA 57.940 37.037 0.00 0.00 0.00 0.98
1771 1814 7.559170 ACATACGTACTCCCTCTGTAAACTAAT 59.441 37.037 0.00 0.00 0.00 1.73
1772 1815 6.886459 ACATACGTACTCCCTCTGTAAACTAA 59.114 38.462 0.00 0.00 0.00 2.24
1773 1816 6.418101 ACATACGTACTCCCTCTGTAAACTA 58.582 40.000 0.00 0.00 0.00 2.24
1774 1817 5.259632 ACATACGTACTCCCTCTGTAAACT 58.740 41.667 0.00 0.00 0.00 2.66
1775 1818 5.573337 ACATACGTACTCCCTCTGTAAAC 57.427 43.478 0.00 0.00 0.00 2.01
1776 1819 6.830324 ACATACATACGTACTCCCTCTGTAAA 59.170 38.462 0.00 0.00 0.00 2.01
1777 1820 6.261603 CACATACATACGTACTCCCTCTGTAA 59.738 42.308 0.00 0.00 0.00 2.41
1778 1821 5.761726 CACATACATACGTACTCCCTCTGTA 59.238 44.000 0.00 1.15 0.00 2.74
1779 1822 4.579340 CACATACATACGTACTCCCTCTGT 59.421 45.833 0.00 0.00 0.00 3.41
1780 1823 4.579340 ACACATACATACGTACTCCCTCTG 59.421 45.833 0.00 0.00 0.00 3.35
1781 1824 4.579340 CACACATACATACGTACTCCCTCT 59.421 45.833 0.00 0.00 0.00 3.69
1782 1825 4.261489 CCACACATACATACGTACTCCCTC 60.261 50.000 0.00 0.00 0.00 4.30
1783 1826 3.635373 CCACACATACATACGTACTCCCT 59.365 47.826 0.00 0.00 0.00 4.20
1784 1827 3.382546 ACCACACATACATACGTACTCCC 59.617 47.826 0.00 0.00 0.00 4.30
1785 1828 4.644103 ACCACACATACATACGTACTCC 57.356 45.455 0.00 0.00 0.00 3.85
1786 1829 4.266976 GCAACCACACATACATACGTACTC 59.733 45.833 0.00 0.00 0.00 2.59
1787 1830 4.081862 AGCAACCACACATACATACGTACT 60.082 41.667 0.00 0.00 0.00 2.73
1788 1831 4.178540 AGCAACCACACATACATACGTAC 58.821 43.478 0.00 0.00 0.00 3.67
1789 1832 4.459390 AGCAACCACACATACATACGTA 57.541 40.909 0.00 0.00 0.00 3.57
1790 1833 3.328382 AGCAACCACACATACATACGT 57.672 42.857 0.00 0.00 0.00 3.57
1791 1834 4.267690 CAGTAGCAACCACACATACATACG 59.732 45.833 0.00 0.00 0.00 3.06
1857 2722 6.812879 AACGAACCCTACCATAAAGAAAAG 57.187 37.500 0.00 0.00 0.00 2.27
1871 2736 8.867097 ACATCAGTATACATATAAACGAACCCT 58.133 33.333 5.50 0.00 0.00 4.34
2021 2892 3.569701 GGGACGGATGGAGTAACGTTATA 59.430 47.826 11.86 0.00 39.95 0.98
2025 2896 2.196319 GGGACGGATGGAGTAACGT 58.804 57.895 0.00 0.00 42.88 3.99
2039 2910 1.810755 CTAAGGCAACCTTTTCGGGAC 59.189 52.381 3.85 0.00 41.69 4.46
2040 2911 1.700739 TCTAAGGCAACCTTTTCGGGA 59.299 47.619 3.85 0.00 41.69 5.14
2041 2912 2.194201 TCTAAGGCAACCTTTTCGGG 57.806 50.000 3.85 0.00 41.69 5.14
2042 2913 4.022329 ACAAATCTAAGGCAACCTTTTCGG 60.022 41.667 3.85 0.00 41.69 4.30
2043 2914 5.048713 AGACAAATCTAAGGCAACCTTTTCG 60.049 40.000 3.85 0.00 41.69 3.46
2044 2915 6.332735 AGACAAATCTAAGGCAACCTTTTC 57.667 37.500 3.85 0.00 41.69 2.29
2045 2916 7.231467 TCTAGACAAATCTAAGGCAACCTTTT 58.769 34.615 3.85 0.00 44.25 2.27
2046 2917 6.779860 TCTAGACAAATCTAAGGCAACCTTT 58.220 36.000 3.85 0.00 44.25 3.11
2047 2918 6.374417 TCTAGACAAATCTAAGGCAACCTT 57.626 37.500 4.01 4.01 46.63 3.50
2048 2919 6.567602 ATCTAGACAAATCTAAGGCAACCT 57.432 37.500 0.00 0.00 36.98 3.50
2049 2920 7.272978 TGTATCTAGACAAATCTAAGGCAACC 58.727 38.462 0.00 0.00 36.98 3.77
2050 2921 8.894768 ATGTATCTAGACAAATCTAAGGCAAC 57.105 34.615 0.00 0.00 36.98 4.17
2084 2955 1.344763 GGAGGGAGTGGAATATGACCG 59.655 57.143 0.00 0.00 0.00 4.79
2085 2956 1.344763 CGGAGGGAGTGGAATATGACC 59.655 57.143 0.00 0.00 0.00 4.02
2105 2976 3.651562 ATACGCGCTACATTGTGAAAC 57.348 42.857 5.73 0.00 37.35 2.78
2196 3067 6.716934 ACGTCTTGTGATGTATCTAAGGAT 57.283 37.500 0.00 0.00 40.35 3.24
2302 3173 3.136260 TGCTGGTTCATACATATGCAGGA 59.864 43.478 1.58 0.00 33.76 3.86
2305 3176 4.779696 TCTTGCTGGTTCATACATATGCA 58.220 39.130 1.58 0.00 33.76 3.96
2317 3188 0.676782 GTACGGGCATCTTGCTGGTT 60.677 55.000 0.00 0.00 44.28 3.67
2318 3189 1.078426 GTACGGGCATCTTGCTGGT 60.078 57.895 0.00 1.10 44.28 4.00
2319 3190 0.464373 ATGTACGGGCATCTTGCTGG 60.464 55.000 0.00 0.00 44.28 4.85
2320 3191 1.064505 CAATGTACGGGCATCTTGCTG 59.935 52.381 0.00 0.00 44.28 4.41
2321 3192 1.382522 CAATGTACGGGCATCTTGCT 58.617 50.000 0.00 0.00 44.28 3.91
2322 3193 0.248621 GCAATGTACGGGCATCTTGC 60.249 55.000 4.78 4.78 44.08 4.01
2323 3194 1.093972 TGCAATGTACGGGCATCTTG 58.906 50.000 2.24 0.00 31.58 3.02
2324 3195 1.094785 GTGCAATGTACGGGCATCTT 58.905 50.000 8.80 0.00 40.05 2.40
2325 3196 1.089481 CGTGCAATGTACGGGCATCT 61.089 55.000 15.84 0.00 40.05 2.90
2326 3197 1.351707 CGTGCAATGTACGGGCATC 59.648 57.895 15.84 3.58 40.05 3.91
2327 3198 3.496711 CGTGCAATGTACGGGCAT 58.503 55.556 15.84 0.00 40.05 4.40
2332 3203 0.650512 GATGTCCCGTGCAATGTACG 59.349 55.000 16.63 16.63 40.98 3.67
2333 3204 1.732941 TGATGTCCCGTGCAATGTAC 58.267 50.000 0.00 0.00 0.00 2.90
2334 3205 2.027653 TCTTGATGTCCCGTGCAATGTA 60.028 45.455 0.00 0.00 0.00 2.29
2335 3206 1.167851 CTTGATGTCCCGTGCAATGT 58.832 50.000 0.00 0.00 0.00 2.71
2336 3207 1.452110 TCTTGATGTCCCGTGCAATG 58.548 50.000 0.00 0.00 0.00 2.82
2337 3208 2.019249 CATCTTGATGTCCCGTGCAAT 58.981 47.619 0.00 0.00 0.00 3.56
2338 3209 1.452110 CATCTTGATGTCCCGTGCAA 58.548 50.000 0.00 0.00 0.00 4.08
2339 3210 1.026182 GCATCTTGATGTCCCGTGCA 61.026 55.000 11.61 0.00 0.00 4.57
2340 3211 1.026182 TGCATCTTGATGTCCCGTGC 61.026 55.000 11.61 0.00 0.00 5.34
2341 3212 1.671979 ATGCATCTTGATGTCCCGTG 58.328 50.000 11.61 0.00 0.00 4.94
2342 3213 2.425143 AATGCATCTTGATGTCCCGT 57.575 45.000 0.00 0.00 0.00 5.28
2343 3214 3.788333 AAAATGCATCTTGATGTCCCG 57.212 42.857 0.00 0.00 0.00 5.14
2374 3245 7.340709 CCACATGGATCAATCACAACAGGTG 62.341 48.000 0.00 0.00 42.88 4.00
2375 3246 3.760151 CACATGGATCAATCACAACAGGT 59.240 43.478 0.00 0.00 0.00 4.00
2376 3247 3.129813 CCACATGGATCAATCACAACAGG 59.870 47.826 0.00 0.00 37.39 4.00
2377 3248 3.129813 CCCACATGGATCAATCACAACAG 59.870 47.826 0.00 0.00 37.39 3.16
2378 3249 3.090790 CCCACATGGATCAATCACAACA 58.909 45.455 0.00 0.00 37.39 3.33
2379 3250 3.355378 TCCCACATGGATCAATCACAAC 58.645 45.455 0.00 0.00 38.61 3.32
2380 3251 3.010472 ACTCCCACATGGATCAATCACAA 59.990 43.478 0.00 0.00 44.07 3.33
2381 3252 2.577563 ACTCCCACATGGATCAATCACA 59.422 45.455 0.00 0.00 44.07 3.58
2382 3253 3.287867 ACTCCCACATGGATCAATCAC 57.712 47.619 0.00 0.00 44.07 3.06
2383 3254 5.651612 ATTACTCCCACATGGATCAATCA 57.348 39.130 0.00 0.00 44.07 2.57
2384 3255 6.547141 TGAAATTACTCCCACATGGATCAATC 59.453 38.462 0.00 0.00 44.07 2.67
2385 3256 6.434302 TGAAATTACTCCCACATGGATCAAT 58.566 36.000 0.00 0.00 44.07 2.57
2386 3257 5.825532 TGAAATTACTCCCACATGGATCAA 58.174 37.500 0.00 0.00 44.07 2.57
2387 3258 5.449297 TGAAATTACTCCCACATGGATCA 57.551 39.130 0.00 0.00 44.07 2.92
2388 3259 5.829924 ACATGAAATTACTCCCACATGGATC 59.170 40.000 0.00 0.00 44.07 3.36
2389 3260 5.769835 ACATGAAATTACTCCCACATGGAT 58.230 37.500 0.00 0.00 44.07 3.41
2390 3261 5.191727 ACATGAAATTACTCCCACATGGA 57.808 39.130 0.00 0.00 42.41 3.41
2391 3262 8.690203 TTATACATGAAATTACTCCCACATGG 57.310 34.615 0.00 0.00 39.20 3.66
2434 3305 7.236640 ACTCCTCACTTTATCTCTCCTCTTTTT 59.763 37.037 0.00 0.00 0.00 1.94
2435 3306 6.728632 ACTCCTCACTTTATCTCTCCTCTTTT 59.271 38.462 0.00 0.00 0.00 2.27
2436 3307 6.154363 CACTCCTCACTTTATCTCTCCTCTTT 59.846 42.308 0.00 0.00 0.00 2.52
2437 3308 5.656416 CACTCCTCACTTTATCTCTCCTCTT 59.344 44.000 0.00 0.00 0.00 2.85
2438 3309 5.200483 CACTCCTCACTTTATCTCTCCTCT 58.800 45.833 0.00 0.00 0.00 3.69
2439 3310 4.340950 CCACTCCTCACTTTATCTCTCCTC 59.659 50.000 0.00 0.00 0.00 3.71
2440 3311 4.285863 CCACTCCTCACTTTATCTCTCCT 58.714 47.826 0.00 0.00 0.00 3.69
2441 3312 3.386402 CCCACTCCTCACTTTATCTCTCC 59.614 52.174 0.00 0.00 0.00 3.71
2442 3313 3.181470 GCCCACTCCTCACTTTATCTCTC 60.181 52.174 0.00 0.00 0.00 3.20
2443 3314 2.769095 GCCCACTCCTCACTTTATCTCT 59.231 50.000 0.00 0.00 0.00 3.10
2444 3315 2.482142 CGCCCACTCCTCACTTTATCTC 60.482 54.545 0.00 0.00 0.00 2.75
2445 3316 1.482593 CGCCCACTCCTCACTTTATCT 59.517 52.381 0.00 0.00 0.00 1.98
2446 3317 1.207329 ACGCCCACTCCTCACTTTATC 59.793 52.381 0.00 0.00 0.00 1.75
2447 3318 1.066143 CACGCCCACTCCTCACTTTAT 60.066 52.381 0.00 0.00 0.00 1.40
2448 3319 0.320374 CACGCCCACTCCTCACTTTA 59.680 55.000 0.00 0.00 0.00 1.85
2449 3320 1.071471 CACGCCCACTCCTCACTTT 59.929 57.895 0.00 0.00 0.00 2.66
2450 3321 1.194781 ATCACGCCCACTCCTCACTT 61.195 55.000 0.00 0.00 0.00 3.16
2451 3322 1.610673 ATCACGCCCACTCCTCACT 60.611 57.895 0.00 0.00 0.00 3.41
2452 3323 1.448540 CATCACGCCCACTCCTCAC 60.449 63.158 0.00 0.00 0.00 3.51
2453 3324 2.659063 CCATCACGCCCACTCCTCA 61.659 63.158 0.00 0.00 0.00 3.86
2454 3325 2.187946 CCATCACGCCCACTCCTC 59.812 66.667 0.00 0.00 0.00 3.71
2455 3326 2.607750 ACCATCACGCCCACTCCT 60.608 61.111 0.00 0.00 0.00 3.69
2456 3327 2.257409 ATCACCATCACGCCCACTCC 62.257 60.000 0.00 0.00 0.00 3.85
2457 3328 0.392998 AATCACCATCACGCCCACTC 60.393 55.000 0.00 0.00 0.00 3.51
2458 3329 0.677731 CAATCACCATCACGCCCACT 60.678 55.000 0.00 0.00 0.00 4.00
2459 3330 1.656818 CCAATCACCATCACGCCCAC 61.657 60.000 0.00 0.00 0.00 4.61
2460 3331 1.378382 CCAATCACCATCACGCCCA 60.378 57.895 0.00 0.00 0.00 5.36
2461 3332 0.107410 TACCAATCACCATCACGCCC 60.107 55.000 0.00 0.00 0.00 6.13
2462 3333 1.299541 CTACCAATCACCATCACGCC 58.700 55.000 0.00 0.00 0.00 5.68
2463 3334 1.933853 GACTACCAATCACCATCACGC 59.066 52.381 0.00 0.00 0.00 5.34
2464 3335 2.193447 CGACTACCAATCACCATCACG 58.807 52.381 0.00 0.00 0.00 4.35
2465 3336 2.167693 TCCGACTACCAATCACCATCAC 59.832 50.000 0.00 0.00 0.00 3.06
2466 3337 2.167693 GTCCGACTACCAATCACCATCA 59.832 50.000 0.00 0.00 0.00 3.07
2467 3338 2.431057 AGTCCGACTACCAATCACCATC 59.569 50.000 0.00 0.00 0.00 3.51
2468 3339 2.168521 CAGTCCGACTACCAATCACCAT 59.831 50.000 0.00 0.00 0.00 3.55
2469 3340 1.548719 CAGTCCGACTACCAATCACCA 59.451 52.381 0.00 0.00 0.00 4.17
2470 3341 1.822990 TCAGTCCGACTACCAATCACC 59.177 52.381 0.00 0.00 0.00 4.02
2471 3342 2.735762 GCTCAGTCCGACTACCAATCAC 60.736 54.545 0.00 0.00 0.00 3.06
2472 3343 1.476891 GCTCAGTCCGACTACCAATCA 59.523 52.381 0.00 0.00 0.00 2.57
2473 3344 1.476891 TGCTCAGTCCGACTACCAATC 59.523 52.381 0.00 0.00 0.00 2.67
2474 3345 1.478510 CTGCTCAGTCCGACTACCAAT 59.521 52.381 0.00 0.00 0.00 3.16
2475 3346 0.888619 CTGCTCAGTCCGACTACCAA 59.111 55.000 0.00 0.00 0.00 3.67
2476 3347 0.037734 TCTGCTCAGTCCGACTACCA 59.962 55.000 0.00 0.00 0.00 3.25
2477 3348 0.736053 CTCTGCTCAGTCCGACTACC 59.264 60.000 0.00 0.00 0.00 3.18
2478 3349 0.736053 CCTCTGCTCAGTCCGACTAC 59.264 60.000 0.00 0.00 0.00 2.73
2479 3350 1.032657 GCCTCTGCTCAGTCCGACTA 61.033 60.000 0.00 0.00 33.53 2.59
2480 3351 2.347322 GCCTCTGCTCAGTCCGACT 61.347 63.158 0.00 0.00 33.53 4.18
2481 3352 1.954362 ATGCCTCTGCTCAGTCCGAC 61.954 60.000 0.00 0.00 38.71 4.79
2482 3353 1.683707 ATGCCTCTGCTCAGTCCGA 60.684 57.895 0.00 0.00 38.71 4.55
2483 3354 1.521010 CATGCCTCTGCTCAGTCCG 60.521 63.158 0.00 0.00 38.71 4.79
2484 3355 1.153208 CCATGCCTCTGCTCAGTCC 60.153 63.158 0.00 0.00 38.71 3.85
2485 3356 1.153208 CCCATGCCTCTGCTCAGTC 60.153 63.158 0.00 0.00 38.71 3.51
2486 3357 2.677289 CCCCATGCCTCTGCTCAGT 61.677 63.158 0.00 0.00 38.71 3.41
2487 3358 1.706995 ATCCCCATGCCTCTGCTCAG 61.707 60.000 0.00 0.00 38.71 3.35
2488 3359 1.695239 ATCCCCATGCCTCTGCTCA 60.695 57.895 0.00 0.00 38.71 4.26
2489 3360 1.228184 CATCCCCATGCCTCTGCTC 60.228 63.158 0.00 0.00 38.71 4.26
2490 3361 2.764737 CCATCCCCATGCCTCTGCT 61.765 63.158 0.00 0.00 38.71 4.24
2491 3362 2.203451 CCATCCCCATGCCTCTGC 60.203 66.667 0.00 0.00 38.26 4.26
2492 3363 1.150081 GTCCATCCCCATGCCTCTG 59.850 63.158 0.00 0.00 0.00 3.35
2493 3364 2.446848 CGTCCATCCCCATGCCTCT 61.447 63.158 0.00 0.00 0.00 3.69
2494 3365 2.111878 CGTCCATCCCCATGCCTC 59.888 66.667 0.00 0.00 0.00 4.70
2495 3366 2.366837 TCGTCCATCCCCATGCCT 60.367 61.111 0.00 0.00 0.00 4.75
2496 3367 2.203209 GTCGTCCATCCCCATGCC 60.203 66.667 0.00 0.00 0.00 4.40
2497 3368 2.588877 CGTCGTCCATCCCCATGC 60.589 66.667 0.00 0.00 0.00 4.06
2498 3369 2.588877 GCGTCGTCCATCCCCATG 60.589 66.667 0.00 0.00 0.00 3.66
2499 3370 3.861797 GGCGTCGTCCATCCCCAT 61.862 66.667 0.00 0.00 0.00 4.00
2519 3390 3.449227 CTGGCATGGTGGCTGCTG 61.449 66.667 0.00 0.00 44.10 4.41
2520 3391 2.509931 AATCTGGCATGGTGGCTGCT 62.510 55.000 0.00 0.00 44.10 4.24
2521 3392 2.056223 AATCTGGCATGGTGGCTGC 61.056 57.895 5.12 0.00 44.10 5.25
2522 3393 0.968901 ACAATCTGGCATGGTGGCTG 60.969 55.000 5.12 4.74 44.10 4.85
2523 3394 0.251922 AACAATCTGGCATGGTGGCT 60.252 50.000 5.12 0.00 44.10 4.75
2524 3395 0.174162 GAACAATCTGGCATGGTGGC 59.826 55.000 0.00 0.00 44.03 5.01
2525 3396 0.819582 GGAACAATCTGGCATGGTGG 59.180 55.000 0.00 0.00 0.00 4.61
2526 3397 1.475280 CTGGAACAATCTGGCATGGTG 59.525 52.381 0.00 0.00 38.70 4.17
2527 3398 1.355381 TCTGGAACAATCTGGCATGGT 59.645 47.619 0.00 0.00 38.70 3.55
2528 3399 2.022195 CTCTGGAACAATCTGGCATGG 58.978 52.381 0.00 0.00 38.70 3.66
2529 3400 2.681848 GACTCTGGAACAATCTGGCATG 59.318 50.000 0.00 0.00 38.70 4.06
2530 3401 2.575279 AGACTCTGGAACAATCTGGCAT 59.425 45.455 0.00 0.00 38.70 4.40
2531 3402 1.980765 AGACTCTGGAACAATCTGGCA 59.019 47.619 0.00 0.00 38.70 4.92
2532 3403 2.777832 AGACTCTGGAACAATCTGGC 57.222 50.000 0.00 0.00 38.70 4.85
2533 3404 4.904241 AGAAAGACTCTGGAACAATCTGG 58.096 43.478 0.00 0.00 38.70 3.86
2534 3405 6.874288 AAAGAAAGACTCTGGAACAATCTG 57.126 37.500 0.00 0.00 38.70 2.90
2535 3406 7.888250 AAAAAGAAAGACTCTGGAACAATCT 57.112 32.000 0.00 0.00 38.70 2.40
2538 3409 9.801873 CAATTAAAAAGAAAGACTCTGGAACAA 57.198 29.630 0.00 0.00 38.70 2.83
2539 3410 7.920682 GCAATTAAAAAGAAAGACTCTGGAACA 59.079 33.333 0.00 0.00 33.37 3.18
2540 3411 8.138074 AGCAATTAAAAAGAAAGACTCTGGAAC 58.862 33.333 0.00 0.00 33.37 3.62
2541 3412 8.237811 AGCAATTAAAAAGAAAGACTCTGGAA 57.762 30.769 0.00 0.00 33.37 3.53
2542 3413 7.502226 TGAGCAATTAAAAAGAAAGACTCTGGA 59.498 33.333 0.00 0.00 33.37 3.86
2543 3414 7.651808 TGAGCAATTAAAAAGAAAGACTCTGG 58.348 34.615 0.00 0.00 33.37 3.86
2544 3415 8.962111 GTTGAGCAATTAAAAAGAAAGACTCTG 58.038 33.333 0.00 0.00 33.37 3.35
2545 3416 8.686334 TGTTGAGCAATTAAAAAGAAAGACTCT 58.314 29.630 0.00 0.00 35.13 3.24
2546 3417 8.856490 TGTTGAGCAATTAAAAAGAAAGACTC 57.144 30.769 0.00 0.00 0.00 3.36
2547 3418 9.822185 ATTGTTGAGCAATTAAAAAGAAAGACT 57.178 25.926 0.00 0.00 44.82 3.24
2548 3419 9.853921 CATTGTTGAGCAATTAAAAAGAAAGAC 57.146 29.630 0.00 0.00 44.82 3.01
2549 3420 9.814899 TCATTGTTGAGCAATTAAAAAGAAAGA 57.185 25.926 0.00 0.00 44.82 2.52
2570 3441 7.718314 TCATTCTTATCTCCCACAATCTCATTG 59.282 37.037 0.00 0.00 45.59 2.82
2571 3442 7.809238 TCATTCTTATCTCCCACAATCTCATT 58.191 34.615 0.00 0.00 0.00 2.57
2572 3443 7.384524 TCATTCTTATCTCCCACAATCTCAT 57.615 36.000 0.00 0.00 0.00 2.90
2573 3444 6.813293 TCATTCTTATCTCCCACAATCTCA 57.187 37.500 0.00 0.00 0.00 3.27
2574 3445 7.935755 TCATTCATTCTTATCTCCCACAATCTC 59.064 37.037 0.00 0.00 0.00 2.75
2575 3446 7.809238 TCATTCATTCTTATCTCCCACAATCT 58.191 34.615 0.00 0.00 0.00 2.40
2576 3447 7.174599 CCTCATTCATTCTTATCTCCCACAATC 59.825 40.741 0.00 0.00 0.00 2.67
2577 3448 7.002879 CCTCATTCATTCTTATCTCCCACAAT 58.997 38.462 0.00 0.00 0.00 2.71
2578 3449 6.158520 TCCTCATTCATTCTTATCTCCCACAA 59.841 38.462 0.00 0.00 0.00 3.33
2579 3450 5.667172 TCCTCATTCATTCTTATCTCCCACA 59.333 40.000 0.00 0.00 0.00 4.17
2580 3451 6.179906 TCCTCATTCATTCTTATCTCCCAC 57.820 41.667 0.00 0.00 0.00 4.61
2581 3452 6.829985 TTCCTCATTCATTCTTATCTCCCA 57.170 37.500 0.00 0.00 0.00 4.37
2582 3453 7.309073 GCATTTCCTCATTCATTCTTATCTCCC 60.309 40.741 0.00 0.00 0.00 4.30
2583 3454 7.309073 GGCATTTCCTCATTCATTCTTATCTCC 60.309 40.741 0.00 0.00 0.00 3.71
2584 3455 7.447853 AGGCATTTCCTCATTCATTCTTATCTC 59.552 37.037 0.00 0.00 43.20 2.75
2585 3456 7.296098 AGGCATTTCCTCATTCATTCTTATCT 58.704 34.615 0.00 0.00 43.20 1.98
2586 3457 7.521871 AGGCATTTCCTCATTCATTCTTATC 57.478 36.000 0.00 0.00 43.20 1.75
2587 3458 7.343833 ACAAGGCATTTCCTCATTCATTCTTAT 59.656 33.333 0.00 0.00 46.94 1.73
2588 3459 6.664816 ACAAGGCATTTCCTCATTCATTCTTA 59.335 34.615 0.00 0.00 46.94 2.10
2589 3460 5.482878 ACAAGGCATTTCCTCATTCATTCTT 59.517 36.000 0.00 0.00 46.94 2.52
2590 3461 5.021458 ACAAGGCATTTCCTCATTCATTCT 58.979 37.500 0.00 0.00 46.94 2.40
2591 3462 5.126707 AGACAAGGCATTTCCTCATTCATTC 59.873 40.000 0.00 0.00 46.94 2.67
2592 3463 5.021458 AGACAAGGCATTTCCTCATTCATT 58.979 37.500 0.00 0.00 46.94 2.57
2593 3464 4.401519 CAGACAAGGCATTTCCTCATTCAT 59.598 41.667 0.00 0.00 46.94 2.57
2594 3465 3.760151 CAGACAAGGCATTTCCTCATTCA 59.240 43.478 0.00 0.00 46.94 2.57
2595 3466 3.428589 GCAGACAAGGCATTTCCTCATTC 60.429 47.826 0.00 0.00 46.94 2.67
2596 3467 2.494870 GCAGACAAGGCATTTCCTCATT 59.505 45.455 0.00 0.00 46.94 2.57
2597 3468 2.097825 GCAGACAAGGCATTTCCTCAT 58.902 47.619 0.00 0.00 46.94 2.90
2598 3469 1.202915 TGCAGACAAGGCATTTCCTCA 60.203 47.619 0.00 0.00 46.94 3.86
2599 3470 1.538047 TGCAGACAAGGCATTTCCTC 58.462 50.000 0.00 0.00 46.94 3.71
2601 3472 2.818130 TTTGCAGACAAGGCATTTCC 57.182 45.000 0.00 0.00 41.58 3.13
2602 3473 4.807304 CCATATTTGCAGACAAGGCATTTC 59.193 41.667 0.00 0.00 41.58 2.17
2603 3474 4.467082 TCCATATTTGCAGACAAGGCATTT 59.533 37.500 0.00 0.00 41.58 2.32
2604 3475 4.025360 TCCATATTTGCAGACAAGGCATT 58.975 39.130 0.00 0.00 41.58 3.56
2605 3476 3.634504 TCCATATTTGCAGACAAGGCAT 58.365 40.909 0.00 0.00 41.58 4.40
2606 3477 3.018856 CTCCATATTTGCAGACAAGGCA 58.981 45.455 0.00 0.00 37.04 4.75
2607 3478 3.282021 TCTCCATATTTGCAGACAAGGC 58.718 45.455 0.00 0.00 37.04 4.35
2608 3479 4.774124 TCTCTCCATATTTGCAGACAAGG 58.226 43.478 0.00 0.00 37.04 3.61
2609 3480 5.668471 TCTCTCTCCATATTTGCAGACAAG 58.332 41.667 0.00 0.00 37.04 3.16
2610 3481 5.682234 TCTCTCTCCATATTTGCAGACAA 57.318 39.130 0.00 0.00 0.00 3.18
2611 3482 5.608449 CATCTCTCTCCATATTTGCAGACA 58.392 41.667 0.00 0.00 0.00 3.41
2612 3483 4.451774 GCATCTCTCTCCATATTTGCAGAC 59.548 45.833 0.00 0.00 0.00 3.51
2613 3484 4.639334 GCATCTCTCTCCATATTTGCAGA 58.361 43.478 0.00 0.00 0.00 4.26
2614 3485 3.432592 CGCATCTCTCTCCATATTTGCAG 59.567 47.826 0.00 0.00 0.00 4.41
2615 3486 3.396560 CGCATCTCTCTCCATATTTGCA 58.603 45.455 0.00 0.00 0.00 4.08
2616 3487 2.740981 CCGCATCTCTCTCCATATTTGC 59.259 50.000 0.00 0.00 0.00 3.68
2617 3488 3.244353 ACCCGCATCTCTCTCCATATTTG 60.244 47.826 0.00 0.00 0.00 2.32
2618 3489 2.975489 ACCCGCATCTCTCTCCATATTT 59.025 45.455 0.00 0.00 0.00 1.40
2619 3490 2.614259 ACCCGCATCTCTCTCCATATT 58.386 47.619 0.00 0.00 0.00 1.28
2620 3491 2.317371 ACCCGCATCTCTCTCCATAT 57.683 50.000 0.00 0.00 0.00 1.78
2621 3492 2.971901 TACCCGCATCTCTCTCCATA 57.028 50.000 0.00 0.00 0.00 2.74
2622 3493 2.175202 GATACCCGCATCTCTCTCCAT 58.825 52.381 0.00 0.00 0.00 3.41
2623 3494 1.145945 AGATACCCGCATCTCTCTCCA 59.854 52.381 0.00 0.00 28.83 3.86
2624 3495 1.917872 AGATACCCGCATCTCTCTCC 58.082 55.000 0.00 0.00 28.83 3.71
2625 3496 4.329462 AAAAGATACCCGCATCTCTCTC 57.671 45.455 0.00 0.00 34.08 3.20
2626 3497 4.080863 ACAAAAAGATACCCGCATCTCTCT 60.081 41.667 0.00 0.00 34.08 3.10
2627 3498 4.192317 ACAAAAAGATACCCGCATCTCTC 58.808 43.478 0.00 0.00 34.08 3.20
2628 3499 4.222124 ACAAAAAGATACCCGCATCTCT 57.778 40.909 0.00 0.00 34.08 3.10
2629 3500 6.431198 TTTACAAAAAGATACCCGCATCTC 57.569 37.500 0.00 0.00 34.08 2.75
2630 3501 6.827586 TTTTACAAAAAGATACCCGCATCT 57.172 33.333 0.00 0.00 36.83 2.90
2631 3502 7.464045 GCAATTTTACAAAAAGATACCCGCATC 60.464 37.037 0.00 0.00 0.00 3.91
2632 3503 6.312672 GCAATTTTACAAAAAGATACCCGCAT 59.687 34.615 0.00 0.00 0.00 4.73
2633 3504 5.635700 GCAATTTTACAAAAAGATACCCGCA 59.364 36.000 0.00 0.00 0.00 5.69
2634 3505 5.062934 GGCAATTTTACAAAAAGATACCCGC 59.937 40.000 0.00 0.00 0.00 6.13
2635 3506 6.159988 TGGCAATTTTACAAAAAGATACCCG 58.840 36.000 0.00 0.00 0.00 5.28
2636 3507 9.313118 CTATGGCAATTTTACAAAAAGATACCC 57.687 33.333 0.00 0.00 0.00 3.69
2637 3508 9.869757 ACTATGGCAATTTTACAAAAAGATACC 57.130 29.630 0.00 0.00 0.00 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.