>input_sequence_72324
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----------------------------------------------------------ATGGCAGGTGAGTATGATCGCA
GCAGTTACGGAAGGTCAGGCACAGGCAGTGACGAAGGTGGGTACAACAAGACCAGCGAGGAAGACTATGGCCGCAGCAGC
GATGAATACGGCCATGGTACCGGTGGTTTCAACAAATCCAGCAACG------------------------ACACCAACAC
GGACGACTACAGTAGCAGTGGCGACTACAACAAGTCCAGCACTGACAATTTCACTGGCGGCTTGAACAAATCTAGCACTG
ATGACTACACTGGCGGTGGCAGCTACAACAAAACTGGTGCCGACGACTACAGTGCCGGTGGCAGCTACAACAAGTCCAGC
ACCGACGATTTCAGTGGCGGCCACAACAAGTCTAGCACGGACGACTATGATGGTGGCTACAAGAACTCCAGCGCCGATGC
CGGCTATGGCAAAGGCGGTTACAAGAAACCAAGCACCGAGGACTCCTCCGCGTACAACAAATCAAGCATCGAGGAGGACT
ACAGCAGCGGCAAGAACACCCCCAACACTGATGACTACGACGGCAGTGGCTACAACAAGTCCAGCACTGATGACGACTAT
GATGGCTATAAGAAGCCCAGCGCCGACGAGTACAGTGGTGGCTACAGCAAGTCCGGCGCCGATGGGTATGCCACTGGTGC
AGGCAAGACCGGCTCTGATGATTACTAG----------------------------------------------------
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>chr2A_1_TraesCS2A01G301400
GGATGCCCACCAGAATAATTGTCAGAATATGCTTTGGCATCTTCCACTGCCTGCAGCATTGCTTCCACTGACCTAACCAA
TGGGAAGTTAAACTGTCCTCCATTAATGAGCCGGCGTGTCTATTCCTACCAGGCACCTTTCTGCTTAAAGTGGGTGTTGC
TGATAATTCAGGAATTTCTCCTCTCTATCGTATCTCTCTCTCTCCCCCAAAGAAAGATCTTATGTGTCAACATTTTTCTA
GTTGAAGGATATTCTGTATCGCATGGTATTCACGATGTGCTGCGTGTATAATGAATTCACGATTGATTTGT--AGGCACT
TATTTGATGCTGAGCTAATGGTCTATACCTGCATCTTAATTCTTAATTTTATACGAGGTTTTTTATAGATGTAGTGCTGA
TGCTGCAAACCATATGTTGGGAGTGAGCTTTTATTTTAACGGTGTTCTCTTCTCACAATATGGGTGTGCTATGTATGGTT
TGTTTTCCCTTTTAGAACAGTTAAAATTTCACAGTTAACAGTTGTAGTGCATAAACCTGCTTTACTTTTGCTGAAAAACT
ATA--------------TATATAAATGAACTTGACGTAGGACCCATCCTTTCAATAAGGGGAGTGATATTTCCCATGTAT
GTTTAGTTGATTATACATTAACTAAAATAATATGGTGTGCATTGGAAATTTTGAATGATTGAAGGGTATATTT-GTGGAT
TATTTTT-GTTTTTGTGGGCACATGTCGCTGCAGTTCCACTTGTCCCTTGGTTACAAAAATTGCAAAAAGATCTCCACCA
GAGAACAGAAGAAGTGCTTTCAGTCATTAAGTGTGCATGATATTAGCCACATAATTTCGATTGATGGAGCCTTGTTCTGA
TGCAATAATTTATTTTTCCAACTGCTTTGGTGTAGCTAGTTACCGCTATAAATACCTCCTACCGTATTGCTTCTTAGTAA
CACAGTGCAACCAAGCAGCTACTTGTGTTCTGTGTGATACATTTCTCTTTATTTTGAGATGGCAGGTGAGTATGATCGCA
GCAGTTACGGAAGGTCAGGCACAGGCAGTGACGAAGGTGGGTACAACAAGACCAGCGAGGAAGACTATGGCCGCAGCAGC
GATGAATACGGCCATGGTACCGGTGGTTTCAACAAATCCAGCAACG------------------------ACACCAACAC
GGACGACTACAGTAGCAGTGGCGACTACAACAAGTCCAGCACTGACAATTTCACTGGCGGCTTGAACAAATCTAGCACTG
ATGACTACACTGGCGGTGGCAGCTACAACAAAACTGGTGCCGACGACTACAGTGCCGGTGGCAGCTACAACAAGTCCAGC
ACCGACGATTTCAGTGGCGGCCACAACAAGTCTAGCACGGACGACTATGATGGTGGCTACAAGAACTCCAGCGCCGATGC
CGGCTATGGCAAAGGCGGTTACAAGAAACCAAGCACCGAGGACTCCTCCGCGTACAACAAATCAAGCATCGAGGAGGACT
ACAGCAGCGGCAAGAACACCCCCAACACTGATGACTACGACGGCAGTGGCTACAACAAGTCCAGCACTGATGACGACTAT
GATGGCTATAAGAAGCCCAGCGCCGACGAGTACAGTGGTGGCTACAGCAAGTCCGGCGCCGATGGGTATGCCACTGGTGC
AGGCAAGACCGGCTCTGATGATTACTAGACAAAATCGCCGTGAAAGTGAGTGTGTTTGCGATGCTAAATACTCCCTCCGT
AAACTAATATAAGAGCGTTTAGATCACTATTTTAGTGTTCTAAACACTCTTATATTAGTTTACAGAGGGAGTACGTATGT
ATGTGTGGTTGCTACTGCTACTGGTCCTTGC-------------------------------------------------
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-----------------------------------------------------TAAATGATTTAGCATTTGTATTCTTAC
TCTTTTCTTTATGGTAGGGTTCGTTTATATGTATAC--TGATGTGATCCCATCATAGAGCCGCGGCTGTTGAGATGAGTG
TGTATATGTACCCGTGTA----TAGCAGTCTTGCTGTCCATCTATGCGCCTGTACGAATGCGTAATACACTTTATCATGT
CTGTAGCTGGATATAACGTTACTCCATCCGTCCCGAAAAGGTTGCCTTAGATTTGTCTAGATACATATAATCCTCGGTCA
TATTCCACTCCCTCCGTTTCACAATGTAGCGCGTATAAGGTCAAACTTTATAAACTTTGACCAAGTTTGTAGAGAAAAAT
ATATACATCTAGAATATCAAATACATATCCTTAGATACATCACAAGACGTACTTCCATATTGTATATATTTTGTATTGTA
AATATAAATAGTTTTCTTCATAAACTTGATCAAAATTTGTAAAGTTTGAAAGTCCTGCATATGTATGAACCAGCAAGATG
CCCGTACATTGCACGGGACATCAAGATGCATTTTTATTATAAAACACCTGTTGTGATTGATCCATGTGGGAGTAATTTCA
TGTATAAAAACTAATGATATCTCAAAAAAGAGGAGAGATAAAGTGAGGAGTGGGCGTGATGGTGATTGGTAGTCGGACTG
AGCAGAGGCATGGGGATGGACGACGCCGGCAGCAGCCACCATGCCAGATTGTTCCAGAGTCTTTCTTTTTAATTGCTCAA
CAATGAGATTGTGGGAGATAAGAATGAATGAGGAAATGCCTTGTCTGCAAATATGGAGAGAGATGCGGGTATCTTTTTGT
AAAATTGCCATAGTTT
>chr2D_1
GGATGCCCATCAGAATAATTGTTGGAATATGCTTTGGCATCTTCCATTGCTTGCAGCATTGCTTCCACTGATCTAACCAG
TGGGAAGTTAAACTGTCCTCCATTAATGAGCCGTTGTGTCTATTCCTGTCAGACACCTTTCTACTTAAAGCGTGTGTTGC
TGATAATTTAGGAATTTCTCCTCTCTATCGTA----TCTCTCTCCCCCAAAGAAAGATCTTATGTGTCAACAGTTTTCTA
GCTGAAGGATATTCTGTCTCGCATGGTATTCACTATGTGCTGCGTGTATACTGAATTCATGATTGATCTGT--AGGCACT
TATTTGATGCCGAGCTAATGGTCTATACCTGCATCTTAA--------TTTATATGAGTTTTTCTGTACATGTAGTGCTGA
TGCTGCA--CCATGTGTTTTGAATGAGCTTTTATTTTCACGGCGTTCTCTTCTCACAGTATGTGTGTGCTATGTATGGTT
TGTTTTCCCTTTTAGAACAGTTAAACTTTCACAGTTAACAGTTGTAGTGCATAAACCTGCTTTAGTTTTGCTGAAAAACT
ATATATATATATATATATATATAAATGAACTTGATGTAGGACCCGTCCTTTCAATAAGGGTAGCGATATTTCCCATGTAT
GTTTAGTTGTT--TACATTAACTGAAATAATATGGTGTGCATTGGAAATTTTGAATGATTGAAGGATATATTT-GTGGAT
TATTTTTTGTTTTTGTGGGCACATGTTACTGCGGCTCCACTTGTCCCTTGGTTACAAAAATTGCAAAAAGATCTCCACCA
GAGAACAGAAGAAGTGCTTTCAGTCATTAAGTATGCATGATATTAGCCACATATTTTTGATTGATGGAGCCTTGTTCTGA
TGCAATAATTTATTTTTCCAACTGCTTTGGTGTAGCTAGTTACCGCTATAAATACCTCCTACCGTATTCCTTCTTAGTAC
CACAGTGCAACCAACTAGCTACTTGTGTTCTGTGTGATGCATTTCTCTTTATTTTGAGATGGCAGATGAGTATGATCGCA
GCAGCTACGGAAGGTCAGGCACAGGCAGTGACGAAGGCGGGTACAACAAGACCAGCGAGGAAGACTATGGCCGCAGCAGC
GATGAATACGGCCATGGTACCGGCGGCTTCAACAAATCCAGCAACGACAACAATGATGGTGCGTACAAGAACACCAACAC
GGACGACTACAGTAGCAGTGGCGGCTACAACAAGTCCAGCACTGACAATTTCACTGGCGGCTTGAATAAATCTAGCCCTG
ATGACTACACTGGCGGTGGCAGCTACAACAAAACTGGTGCCGACGACTACAGTGCCGGTGGCGACTACAACAAGTCCAGC
ACCGACGATTTCAGTGGCGGCCACAACAAGTCTAGCACGGACGACTATGATGGTGGCTACAAGAACTCCAGCGCCGATGC
CGGCTATGGCGAAGGCGGTTACAAGAAACCAAGCACCGAGGACTCCCCCGCGTACAACAAATCAAGCATCGAGGAGGACT
ACAGCAGCGGCAAGAACACCCCCAATACTGATGACTATGACGGCAGTGGCTACAACAAGTCCAGCACTGATGA-------
--TGGCTACAAGAAGCCCGGTGCCGACGAGTACAGTGGTGGCTACAGCAAGTCCGGCGCCGATGGGTATGCCACTGGTGC
AGGCGAGACTGGCTCTGATGATTACTAGACAAAATCGTCGTGAAAGTGAGTGTGTTTGCGATGCTAAATAC---------
--------------------------------------------------------------------------GTATGT
ATGTGTGGTTTGTACTGCTACTGGTCCTTGC-------------------------------------------------
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-----------------------------------------------------TAAATGATTTAGCGTTTGTATTCTT--
--TTTTCTTTATGGTGGGGT-CGATCATATGTATAC--TGATGTGATCCCATCATAGCGCCGCGGCTGTTGAGATGAGTG
TGTATATGTACCCGTGTGTATGTAGCAGTCTTGCTGTCCATCTATGCGCTTGTACGAATGCGTAATACACTTTATCATGT
CTGTAGCTGGACATA-----------------------------------------------------------------
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>chr2B_1
GGATGCCCATCAGAATAATTGTCGGAATATGCTTTGGCATCTTCCATTGCTTGCAGCATTGCTTCCACTGATCTAACCAG
TGGGAAGTTAAACTGTCCTCCATTAATGAGCCGGTGTGTCTATTCCTGTCAGACACCTTTCTGCTTAAAGCGGGTGTTGC
TGATAATTCAGGAATTTCTCCTCTCTATCGTA----TCTCTCTCTCCCAAAGAAAGATCTTACGTGTCAACA-TTTTCTA
GTTGAAGAATATTCTGTATCGCATGGTATTGACGATGCGCTGCGTGTATACTGAATTCATGATTGATTTGTGTAGGCACT
TATTTGATGCTGAGCTAATGGTCTATACCTGCATCTTAA--------TTTTATACGAGTTTTCTATAGATGTAGTGCTGA
TGCTGCAAACCATGTGTTGGGAATGAGCTTTTATTTTCGCGGTGTTCTCTTCTCACAATATGGGTGTGCTATGTATGGCT
TGTTTTCCCCTTTAGAACAGTTAAAATTTCACAGTTGACAGTTGTAGTGCATAGACCTGCTTCAGTTTTG----------
-----------------TATATGAATGAACTTGATCTAGGACCCATCCTTTCAACAAGGGAAGTGATATTTTTTATGTA-
-------TGTT--TACATTAACTGAAATAATATGGCGTGCATTGGAAATTTTGAATCATTGAAGGATATATTTTGTGGAT
TAATTTTTGTTTTTGTGGGCACATGTCTCTGCGGTTCCACTTGTCCCTTGGTTACAAAAATTGCGAAAAGATCTCCACCA
GAGAACAGAAGAAGTGCTTTCAGTCATTAAGTGTGCATGATATTAGCCACATATTTTCGATTGATGGAGCCTTGTTTGGA
CGCAATAATTTATTTTTCCAACTGCTTTAGTGTAGCTAGTTACTGCTATAAATACCTCCTACCGTATTGCTTCTTAGTAC
CACAGTGCAACCAAGCAGCTACTTGTGTTCTGTGTGATACATTTCTCTTTATTTTGAGATGGCAGGTGAGTATGATCGCA
GCAGCTACGGAAGGTCAGGCACAGGCAGTGACGAAGGCGAGTACAACAAGACCAGCAAGGAAGACTATGGCCGCAGCAGC
GATGAATACAGCCATGGTACCGGCGGTTTCAACAAATCCAGCAACGACAACAATGATGGTGGGTACAAGAACACCGACAC
GGACGACTACAGTAGCAGTGGCGGCTACAACAAGTCCAGCACTGACAATTTCACTGGCGGCTTGAACAAATCTAGCACTG
ATGACTACACTGGCGGTGGCAGCTACAACAAAACTGGTGCCGACGACTACACTGCCGGTGGCGACTACAAGAAGTACAGC
ACCGAAGATTTTAGTGGCGGCCACAACAAGTCTAGCACAGACGACTATGATGGTGGCTACAAGAACTCCAGTGCTGATGC
CGTCTATGGCGAAGGCGGTTACAAGAAACCAAGCACCGAGGACTCCTCCGCGTACAACAAATCAAGCATCGAGGAGGACT
ACAGCAGCGGCAAGAACACCCCCAACACTGATGACTACGACGGCAGTGGCTACAACAAGTCCAGCACTGATGACGACTAC
GATGGCTACAAGAAGGCCGGCGCCGACGAGTACAGTGGTGGCTACAGCAAGTCCGGCGCCGATGGGTATGCCACTCGAGC
AGGCAAGACCGGCTCTGATGATTACTAGACAAAATAGTCGTGAAAGTGAGTGTGTTTGCGATGCTAAATAC---------
--------------------------------------------------------------------------GTATGC
ATGTGTGGTTGCTACTGCTACTGGTCCTTGCTAACGCTATGTTTGGATGTATGCATTGGGAGCCTTGGCATTGTATTGGG
TTGAATATCAATATCACACTATATTGGTATTGAGATTGAATGCCAATATTTTTGTTTGGATGCTTAGATATTCGGAACAC
AGACTTGATATTGAGGTCGAATGCCAAATGTTGTTTGGGTTGTCAATGTGAGGCATTGAGTTGTATGAGACTTTGCCGGG
AGATCGAGCAAAGAGGAGGCATGACGCTTGACAGAGCTCTACGAAGAGAGGAAGGAGCCGGTCAGCAACACACATGCGCT
GAGCGGCAAAGCTCGTGGTGGAGGCACGCCGGTCGCCGGAGATCATGGTGGAGGCGGGGTAGGAGGGCGGCGCCGGTCGC
TGGAGAGCTCTGGCGGGGCAGGAACGTGGCGCGGCTACTAGAGAGCTCTGGCGGGGCGGGAAGGTGGCGTCGGCCGCTGG
ATCTTGGGGTGGAGACGAGGCAGGAGGGTGGCGGCGGCCACCGGATCTTGGGGTGCAGGCACGCCGGCCGCCGGGGCTCG
GTGTGGAGGGGGGCAGGATGGGCGCCGCCGCCGTTCGTCGAGACGGGAGGTACGAGCTGGGTTGGTTTCGTTAGCGAACA
GATAAGCACACTATCCCAATGCCTAGCGATGTCGAGCACACAGCCTCCGAATTGGGCTAGCTGTTTTTTGCGTTAGGGAC
GGACCGCTCAATATCGAGCCCGAATGCCACGATTGAATGCCAAGACCAACCAAACGGTGGCACTCGGGATATTAGGCCCA
GACAAATGCCAATACCCAATACTAGGCCTGAATGTAAACATCCAAACGGAGCGTAAATGATTTAGCATTTGTATTCTTAC
TATTTTCTTTATGGTGGGGTTCGTTTATATGTATACCGTGATGTGATCTCATCATAGAGCCGCGGCTGTTGAAATGAGTG
TGTATATA----------TATGTAGCAGTCTTGATGATGAATGTG-----------------------------------
------------------------------------------------AGATTTGTCTAGATACATATAATCCTTCGTCA
TATTCCACTCCCTCCATTTCACAATGTAGCGCGTATAAAGTTAAACTTTATAAACCTTGACTAAATTTATAGAGGAAAAT
ATATACATCTAGGATACCAAATACATGTCCTTAGATACATCACAAGATGTACTTTCATATCGTATATATTTTGTATTATA
AATATAAATAGTTTTCTTCATAAACTTAGTCAAAATTTGTAAAGTTTGAAAGCCCCGCATATGTATG-------------
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>SNPs
---------S-------------S----------------------S---S--------------------S-------S
----------------------------------S------------SS---S-----------------S---------
--------------------------------SSSS------------------------------------S-------
--------------------------------------------------S--------S--------------------
---------------------------------------SSSSSSSS------S--------S-----------------
-------------S--------S--------------S------------------------------------------
----------------------------------------------------------------S---------------
----------------------------------S-------------------------S-------------------
---------S-SS----------S-----------------------------------------S--------------
---------------------------S----S-----------------------------------------------
-----------------------------------------------------S--------------------------
-------------------------------------------------------------------------------S
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----S--------------------------------S------------------------------------------
-----------------------S--------------------------------------------------------
-----------------------S--------------------------------------------------------
--------------------------------------------------------------SS----------------
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----------S---------------------------------------------------------------------
-------------------------------------------------------------------------------S
--------S---------S-------------------------------------------------------------
-------------------------------------S---------------------------------SSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------
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-S-------------S----------------------------------------------------------------
-----------------S-------------------------------S------------------------------
-----------S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------SS----
---------------S----------------------S--S-------------S-----S--S---S-----S-----
------------S---S---------S--------------------S------S-----S----------------S--
---------------------------SS-----------------------S--S-----------SSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSS
>forward_115
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---------------TCCTCCATTAATGAGCCGGC---------------------------------------------
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>reverse_1078
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-------------------------------------TGGGTACAACAAGACCAGCG-----------------------
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>forward_129
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-----------------------------GCCGGCGTGTCTATTCCTAC-------------------------------
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>reverse_1344
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---------------------------------------------------------------GCTACAACAAGTCCAGC
ACC-----------------------------------------------------------------------------
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>forward_133
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--------------------------------GGCGTGTCTATTCCTACCAGG---------------------------
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>reverse_2955
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--------------------------------------------------------------------------CGGTCA
TATTCCACTCCCTCC-----------------------------------------------------------------
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