Multiple sequence alignment - TraesCS2A01G299000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G299000 chr2A 100.000 2597 0 0 1 2597 514773054 514775650 0.000000e+00 4796.0
1 TraesCS2A01G299000 chr2A 93.644 236 15 0 14 249 514763967 514763732 1.140000e-93 353.0
2 TraesCS2A01G299000 chr2B 89.192 2128 118 45 445 2509 450764413 450766491 0.000000e+00 2553.0
3 TraesCS2A01G299000 chr2B 95.082 61 3 0 256 316 450764300 450764360 2.130000e-16 97.1
4 TraesCS2A01G299000 chr2D 89.670 2033 109 45 520 2491 379725831 379727823 0.000000e+00 2497.0
5 TraesCS2A01G299000 chr2D 92.825 446 24 4 2107 2552 379728433 379728870 7.840000e-180 640.0
6 TraesCS2A01G299000 chr2D 89.474 95 7 2 256 349 379725648 379725740 1.630000e-22 117.0
7 TraesCS2A01G299000 chr3A 95.510 245 10 1 12 256 260158631 260158388 8.710000e-105 390.0
8 TraesCS2A01G299000 chr3A 94.628 242 13 0 14 255 23130189 23129948 2.440000e-100 375.0
9 TraesCS2A01G299000 chr7A 95.082 244 11 1 12 255 675429598 675429840 1.460000e-102 383.0
10 TraesCS2A01G299000 chr7A 93.004 243 16 1 14 256 134461977 134461736 1.140000e-93 353.0
11 TraesCS2A01G299000 chr5B 93.033 244 17 0 12 255 455283570 455283327 8.840000e-95 357.0
12 TraesCS2A01G299000 chr5B 92.623 244 18 0 12 255 670107611 670107854 4.110000e-93 351.0
13 TraesCS2A01G299000 chr7D 92.623 244 17 1 12 255 530859986 530859744 1.480000e-92 350.0
14 TraesCS2A01G299000 chr1B 92.213 244 19 0 12 255 39891778 39891535 1.910000e-91 346.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G299000 chr2A 514773054 514775650 2596 False 4796.000000 4796 100.000000 1 2597 1 chr2A.!!$F1 2596
1 TraesCS2A01G299000 chr2B 450764300 450766491 2191 False 1325.050000 2553 92.137000 256 2509 2 chr2B.!!$F1 2253
2 TraesCS2A01G299000 chr2D 379725648 379728870 3222 False 1084.666667 2497 90.656333 256 2552 3 chr2D.!!$F1 2296

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
112 113 0.104304 CCGGTCAGATTCGGGGTTAG 59.896 60.0 0.0 0.0 42.32 2.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2082 2175 0.03582 TGGACCCAGCCGTCAATTAC 60.036 55.0 0.0 0.0 34.24 1.89 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 4.745751 CAGCGGACGGGGCGTTAA 62.746 66.667 0.00 0.00 41.37 2.01
33 34 4.747529 AGCGGACGGGGCGTTAAC 62.748 66.667 0.00 0.00 41.37 2.01
36 37 4.067913 GGACGGGGCGTTAACGGA 62.068 66.667 27.82 0.00 41.37 4.69
37 38 2.810887 GACGGGGCGTTAACGGAC 60.811 66.667 27.82 13.02 41.37 4.79
38 39 4.722855 ACGGGGCGTTAACGGACG 62.723 66.667 27.82 15.52 45.40 4.79
39 40 4.722855 CGGGGCGTTAACGGACGT 62.723 66.667 27.82 0.00 44.50 4.34
40 41 2.810887 GGGGCGTTAACGGACGTC 60.811 66.667 27.82 7.13 46.22 4.34
42 43 3.455685 GGCGTTAACGGACGTCAG 58.544 61.111 27.82 16.61 46.20 3.51
43 44 2.723719 GGCGTTAACGGACGTCAGC 61.724 63.158 27.82 9.45 46.20 4.26
44 45 3.051171 GCGTTAACGGACGTCAGCG 62.051 63.158 27.82 15.00 44.50 5.18
45 46 2.767697 GTTAACGGACGTCAGCGC 59.232 61.111 18.91 0.00 42.83 5.92
46 47 2.801996 TTAACGGACGTCAGCGCG 60.802 61.111 18.91 13.87 42.83 6.86
71 72 3.803082 CGTCCATTGGCCAGCGTG 61.803 66.667 5.11 6.71 0.00 5.34
72 73 3.443045 GTCCATTGGCCAGCGTGG 61.443 66.667 21.63 21.63 41.55 4.94
81 82 4.941609 CCAGCGTGGCTACTGATT 57.058 55.556 0.00 0.00 36.40 2.57
82 83 2.682893 CCAGCGTGGCTACTGATTC 58.317 57.895 0.00 0.00 36.40 2.52
83 84 1.148157 CCAGCGTGGCTACTGATTCG 61.148 60.000 0.00 0.00 36.40 3.34
84 85 1.519455 AGCGTGGCTACTGATTCGC 60.519 57.895 0.00 0.00 43.16 4.70
85 86 2.860628 GCGTGGCTACTGATTCGCG 61.861 63.158 0.00 0.00 34.88 5.87
86 87 2.230940 CGTGGCTACTGATTCGCGG 61.231 63.158 6.13 0.00 0.00 6.46
87 88 1.883084 GTGGCTACTGATTCGCGGG 60.883 63.158 6.13 0.00 0.00 6.13
88 89 2.967615 GGCTACTGATTCGCGGGC 60.968 66.667 6.13 0.00 0.00 6.13
89 90 2.967615 GCTACTGATTCGCGGGCC 60.968 66.667 6.13 0.00 0.00 5.80
90 91 2.280186 CTACTGATTCGCGGGCCC 60.280 66.667 13.57 13.57 0.00 5.80
91 92 3.078196 TACTGATTCGCGGGCCCA 61.078 61.111 24.92 1.02 0.00 5.36
92 93 2.587322 CTACTGATTCGCGGGCCCAA 62.587 60.000 24.92 9.41 0.00 4.12
93 94 2.862674 TACTGATTCGCGGGCCCAAC 62.863 60.000 24.92 12.72 0.00 3.77
102 103 3.728373 GGGCCCAACCGGTCAGAT 61.728 66.667 19.95 0.00 38.37 2.90
103 104 2.355115 GGCCCAACCGGTCAGATT 59.645 61.111 8.04 0.00 35.67 2.40
104 105 1.749258 GGCCCAACCGGTCAGATTC 60.749 63.158 8.04 0.00 35.67 2.52
105 106 2.106683 GCCCAACCGGTCAGATTCG 61.107 63.158 8.04 0.00 0.00 3.34
110 111 2.987125 CCGGTCAGATTCGGGGTT 59.013 61.111 0.00 0.00 42.32 4.11
111 112 2.204748 CCGGTCAGATTCGGGGTTA 58.795 57.895 0.00 0.00 42.32 2.85
112 113 0.104304 CCGGTCAGATTCGGGGTTAG 59.896 60.000 0.00 0.00 42.32 2.34
113 114 0.529992 CGGTCAGATTCGGGGTTAGC 60.530 60.000 0.00 0.00 0.00 3.09
114 115 0.529992 GGTCAGATTCGGGGTTAGCG 60.530 60.000 0.00 0.00 0.00 4.26
115 116 1.143183 TCAGATTCGGGGTTAGCGC 59.857 57.895 0.00 0.00 0.00 5.92
116 117 1.153449 CAGATTCGGGGTTAGCGCA 60.153 57.895 11.47 0.00 0.00 6.09
117 118 1.144057 AGATTCGGGGTTAGCGCAG 59.856 57.895 11.47 0.00 0.00 5.18
132 133 2.887568 CAGCCGAAGCGAGCGATT 60.888 61.111 0.00 0.00 46.67 3.34
133 134 2.125512 AGCCGAAGCGAGCGATTT 60.126 55.556 0.00 0.00 46.67 2.17
134 135 2.167861 AGCCGAAGCGAGCGATTTC 61.168 57.895 0.00 0.00 46.67 2.17
135 136 2.615618 CCGAAGCGAGCGATTTCG 59.384 61.111 17.12 17.12 42.31 3.46
147 148 1.625616 CGATTTCGCGAGTTGGTAGT 58.374 50.000 9.59 0.00 0.00 2.73
148 149 1.990563 CGATTTCGCGAGTTGGTAGTT 59.009 47.619 9.59 0.00 0.00 2.24
149 150 2.410730 CGATTTCGCGAGTTGGTAGTTT 59.589 45.455 9.59 0.00 0.00 2.66
150 151 3.120786 CGATTTCGCGAGTTGGTAGTTTT 60.121 43.478 9.59 0.00 0.00 2.43
151 152 4.609783 CGATTTCGCGAGTTGGTAGTTTTT 60.610 41.667 9.59 0.00 0.00 1.94
168 169 1.950828 TTTTGTCGCGGTTTAGTCCA 58.049 45.000 6.13 0.00 0.00 4.02
169 170 1.950828 TTTGTCGCGGTTTAGTCCAA 58.049 45.000 6.13 0.00 0.00 3.53
170 171 1.950828 TTGTCGCGGTTTAGTCCAAA 58.049 45.000 6.13 0.00 0.00 3.28
171 172 2.172851 TGTCGCGGTTTAGTCCAAAT 57.827 45.000 6.13 0.00 0.00 2.32
172 173 2.496111 TGTCGCGGTTTAGTCCAAATT 58.504 42.857 6.13 0.00 0.00 1.82
173 174 2.879646 TGTCGCGGTTTAGTCCAAATTT 59.120 40.909 6.13 0.00 0.00 1.82
174 175 3.231160 GTCGCGGTTTAGTCCAAATTTG 58.769 45.455 11.40 11.40 0.00 2.32
188 189 5.416862 CCAAATTTGGTAGTTTTTGGCAC 57.583 39.130 26.34 0.00 41.00 5.01
189 190 4.878397 CCAAATTTGGTAGTTTTTGGCACA 59.122 37.500 26.34 0.00 41.00 4.57
190 191 5.355350 CCAAATTTGGTAGTTTTTGGCACAA 59.645 36.000 26.34 0.00 43.69 3.33
191 192 6.127897 CCAAATTTGGTAGTTTTTGGCACAAA 60.128 34.615 26.34 0.00 43.69 2.83
192 193 7.575720 CCAAATTTGGTAGTTTTTGGCACAAAA 60.576 33.333 26.34 8.46 43.69 2.44
203 204 2.422597 TGGCACAAAATCGTAGAGTGG 58.577 47.619 0.00 0.00 34.88 4.00
204 205 2.224426 TGGCACAAAATCGTAGAGTGGT 60.224 45.455 0.00 0.00 34.88 4.16
205 206 3.007074 TGGCACAAAATCGTAGAGTGGTA 59.993 43.478 0.00 0.00 34.88 3.25
206 207 3.617263 GGCACAAAATCGTAGAGTGGTAG 59.383 47.826 0.00 0.00 43.63 3.18
207 208 4.243270 GCACAAAATCGTAGAGTGGTAGT 58.757 43.478 0.00 0.00 43.63 2.73
208 209 4.689345 GCACAAAATCGTAGAGTGGTAGTT 59.311 41.667 0.00 0.00 43.63 2.24
209 210 5.178809 GCACAAAATCGTAGAGTGGTAGTTT 59.821 40.000 0.00 0.00 43.63 2.66
210 211 6.293244 GCACAAAATCGTAGAGTGGTAGTTTT 60.293 38.462 0.00 0.00 43.63 2.43
211 212 7.636326 CACAAAATCGTAGAGTGGTAGTTTTT 58.364 34.615 0.00 0.00 43.63 1.94
212 213 7.797123 CACAAAATCGTAGAGTGGTAGTTTTTC 59.203 37.037 0.00 0.00 43.63 2.29
213 214 6.701432 AAATCGTAGAGTGGTAGTTTTTCG 57.299 37.500 0.00 0.00 43.63 3.46
214 215 4.836125 TCGTAGAGTGGTAGTTTTTCGT 57.164 40.909 0.00 0.00 0.00 3.85
215 216 4.787598 TCGTAGAGTGGTAGTTTTTCGTC 58.212 43.478 0.00 0.00 0.00 4.20
216 217 4.275689 TCGTAGAGTGGTAGTTTTTCGTCA 59.724 41.667 0.00 0.00 0.00 4.35
217 218 4.380974 CGTAGAGTGGTAGTTTTTCGTCAC 59.619 45.833 0.00 0.00 0.00 3.67
218 219 3.378339 AGAGTGGTAGTTTTTCGTCACG 58.622 45.455 0.00 0.00 0.00 4.35
219 220 3.118542 GAGTGGTAGTTTTTCGTCACGT 58.881 45.455 0.00 0.00 0.00 4.49
220 221 3.524541 AGTGGTAGTTTTTCGTCACGTT 58.475 40.909 0.00 0.00 0.00 3.99
221 222 3.934579 AGTGGTAGTTTTTCGTCACGTTT 59.065 39.130 0.00 0.00 0.00 3.60
222 223 4.033243 AGTGGTAGTTTTTCGTCACGTTTC 59.967 41.667 0.00 0.00 0.00 2.78
223 224 3.309410 TGGTAGTTTTTCGTCACGTTTCC 59.691 43.478 0.00 0.00 0.00 3.13
224 225 2.724744 AGTTTTTCGTCACGTTTCCG 57.275 45.000 0.00 0.00 40.83 4.30
226 227 2.029606 AGTTTTTCGTCACGTTTCCGTC 59.970 45.455 0.00 0.00 46.28 4.79
227 228 1.638133 TTTTCGTCACGTTTCCGTCA 58.362 45.000 0.00 0.00 46.28 4.35
228 229 1.638133 TTTCGTCACGTTTCCGTCAA 58.362 45.000 0.00 0.00 46.28 3.18
229 230 1.855513 TTCGTCACGTTTCCGTCAAT 58.144 45.000 0.00 0.00 46.28 2.57
230 231 1.855513 TCGTCACGTTTCCGTCAATT 58.144 45.000 0.00 0.00 46.28 2.32
231 232 1.523515 TCGTCACGTTTCCGTCAATTG 59.476 47.619 0.00 0.00 46.28 2.32
232 233 1.259507 CGTCACGTTTCCGTCAATTGT 59.740 47.619 5.13 0.00 46.28 2.71
233 234 2.635444 GTCACGTTTCCGTCAATTGTG 58.365 47.619 5.13 0.00 46.28 3.33
234 235 1.600013 TCACGTTTCCGTCAATTGTGG 59.400 47.619 5.13 9.06 46.28 4.17
235 236 1.332375 CACGTTTCCGTCAATTGTGGT 59.668 47.619 15.77 0.00 46.28 4.16
236 237 2.544686 CACGTTTCCGTCAATTGTGGTA 59.455 45.455 15.77 6.94 46.28 3.25
237 238 2.803956 ACGTTTCCGTCAATTGTGGTAG 59.196 45.455 15.77 10.02 46.28 3.18
238 239 2.803956 CGTTTCCGTCAATTGTGGTAGT 59.196 45.455 15.77 0.00 0.00 2.73
239 240 3.249080 CGTTTCCGTCAATTGTGGTAGTT 59.751 43.478 15.77 0.00 0.00 2.24
240 241 4.260866 CGTTTCCGTCAATTGTGGTAGTTT 60.261 41.667 15.77 0.00 0.00 2.66
241 242 5.584442 GTTTCCGTCAATTGTGGTAGTTTT 58.416 37.500 15.77 0.00 0.00 2.43
242 243 5.838531 TTCCGTCAATTGTGGTAGTTTTT 57.161 34.783 15.77 0.00 0.00 1.94
243 244 5.176407 TCCGTCAATTGTGGTAGTTTTTG 57.824 39.130 15.77 0.00 0.00 2.44
244 245 4.036971 TCCGTCAATTGTGGTAGTTTTTGG 59.963 41.667 15.77 1.16 0.00 3.28
245 246 3.733727 CGTCAATTGTGGTAGTTTTTGGC 59.266 43.478 5.13 0.00 0.00 4.52
246 247 4.499019 CGTCAATTGTGGTAGTTTTTGGCT 60.499 41.667 5.13 0.00 0.00 4.75
247 248 5.278071 CGTCAATTGTGGTAGTTTTTGGCTA 60.278 40.000 5.13 0.00 0.00 3.93
248 249 6.508777 GTCAATTGTGGTAGTTTTTGGCTAA 58.491 36.000 5.13 0.00 0.00 3.09
249 250 6.981559 GTCAATTGTGGTAGTTTTTGGCTAAA 59.018 34.615 5.13 0.00 0.00 1.85
250 251 7.655732 GTCAATTGTGGTAGTTTTTGGCTAAAT 59.344 33.333 5.13 0.00 0.00 1.40
251 252 8.861086 TCAATTGTGGTAGTTTTTGGCTAAATA 58.139 29.630 5.13 0.00 0.00 1.40
252 253 8.921670 CAATTGTGGTAGTTTTTGGCTAAATAC 58.078 33.333 7.84 7.84 0.00 1.89
253 254 7.826918 TTGTGGTAGTTTTTGGCTAAATACT 57.173 32.000 19.32 19.32 39.98 2.12
254 255 7.443259 TGTGGTAGTTTTTGGCTAAATACTC 57.557 36.000 19.03 12.08 38.47 2.59
284 285 0.899720 AACTTGCAGGAATGGCATGG 59.100 50.000 1.40 0.00 41.58 3.66
325 326 4.038042 TCTCTCTCGGTGGCATAGTTAATG 59.962 45.833 0.00 0.00 38.74 1.90
328 329 4.439057 TCTCGGTGGCATAGTTAATGAAC 58.561 43.478 0.00 0.00 37.86 3.18
332 333 6.046593 TCGGTGGCATAGTTAATGAACTTAG 58.953 40.000 0.00 0.00 43.70 2.18
336 337 6.094881 GTGGCATAGTTAATGAACTTAGGCAA 59.905 38.462 19.00 5.89 46.00 4.52
338 339 7.996066 TGGCATAGTTAATGAACTTAGGCAATA 59.004 33.333 16.48 0.52 43.70 1.90
340 341 9.884465 GCATAGTTAATGAACTTAGGCAATAAG 57.116 33.333 0.00 6.43 43.70 1.73
341 342 9.884465 CATAGTTAATGAACTTAGGCAATAAGC 57.116 33.333 0.00 0.00 43.70 3.09
354 355 3.560105 GCAATAAGCCAGAGGGATTTCT 58.440 45.455 0.00 0.00 40.72 2.52
365 366 3.262915 AGAGGGATTTCTCAAGTCACTGG 59.737 47.826 0.00 0.00 36.30 4.00
366 367 2.307098 AGGGATTTCTCAAGTCACTGGG 59.693 50.000 0.00 0.00 0.00 4.45
367 368 2.305927 GGGATTTCTCAAGTCACTGGGA 59.694 50.000 0.00 0.00 0.00 4.37
368 369 3.244911 GGGATTTCTCAAGTCACTGGGAA 60.245 47.826 0.00 0.00 33.90 3.97
369 370 3.753797 GGATTTCTCAAGTCACTGGGAAC 59.246 47.826 0.00 0.00 35.51 3.62
370 371 4.505742 GGATTTCTCAAGTCACTGGGAACT 60.506 45.833 0.00 0.00 35.51 3.01
371 372 4.503714 TTTCTCAAGTCACTGGGAACTT 57.496 40.909 0.00 0.00 35.51 2.66
372 373 3.475566 TCTCAAGTCACTGGGAACTTG 57.524 47.619 12.90 12.90 40.44 3.16
373 374 3.038280 TCTCAAGTCACTGGGAACTTGA 58.962 45.455 17.74 17.74 44.04 3.02
374 375 3.648067 TCTCAAGTCACTGGGAACTTGAT 59.352 43.478 18.54 0.00 44.79 2.57
375 376 4.103153 TCTCAAGTCACTGGGAACTTGATT 59.897 41.667 18.54 0.00 44.79 2.57
376 377 5.306937 TCTCAAGTCACTGGGAACTTGATTA 59.693 40.000 18.54 11.30 44.79 1.75
377 378 5.305585 TCAAGTCACTGGGAACTTGATTAC 58.694 41.667 15.96 0.00 42.20 1.89
378 379 5.071788 TCAAGTCACTGGGAACTTGATTACT 59.928 40.000 15.96 0.00 42.20 2.24
379 380 5.153950 AGTCACTGGGAACTTGATTACTC 57.846 43.478 0.00 0.00 0.00 2.59
380 381 4.593206 AGTCACTGGGAACTTGATTACTCA 59.407 41.667 0.00 0.00 0.00 3.41
381 382 4.932200 GTCACTGGGAACTTGATTACTCAG 59.068 45.833 0.00 0.00 31.68 3.35
382 383 4.593206 TCACTGGGAACTTGATTACTCAGT 59.407 41.667 0.00 0.00 34.65 3.41
383 384 5.778241 TCACTGGGAACTTGATTACTCAGTA 59.222 40.000 0.00 0.00 33.36 2.74
384 385 6.071334 TCACTGGGAACTTGATTACTCAGTAG 60.071 42.308 0.00 0.00 33.36 2.57
385 386 5.086104 TGGGAACTTGATTACTCAGTAGC 57.914 43.478 0.00 0.00 31.68 3.58
386 387 4.777896 TGGGAACTTGATTACTCAGTAGCT 59.222 41.667 0.00 0.00 31.68 3.32
387 388 5.105310 TGGGAACTTGATTACTCAGTAGCTC 60.105 44.000 0.00 0.00 31.68 4.09
388 389 5.128008 GGGAACTTGATTACTCAGTAGCTCT 59.872 44.000 0.00 0.00 31.68 4.09
389 390 6.039616 GGAACTTGATTACTCAGTAGCTCTG 58.960 44.000 0.00 0.00 44.85 3.35
390 391 5.004922 ACTTGATTACTCAGTAGCTCTGC 57.995 43.478 0.00 0.00 43.32 4.26
391 392 4.464244 ACTTGATTACTCAGTAGCTCTGCA 59.536 41.667 0.00 0.00 43.32 4.41
392 393 4.645762 TGATTACTCAGTAGCTCTGCAG 57.354 45.455 7.63 7.63 43.32 4.41
393 394 3.382865 TGATTACTCAGTAGCTCTGCAGG 59.617 47.826 15.13 5.82 43.32 4.85
394 395 2.808906 TACTCAGTAGCTCTGCAGGA 57.191 50.000 15.13 0.00 43.32 3.86
395 396 1.930251 ACTCAGTAGCTCTGCAGGAA 58.070 50.000 15.13 0.00 43.32 3.36
396 397 1.824230 ACTCAGTAGCTCTGCAGGAAG 59.176 52.381 15.13 5.91 43.32 3.46
397 398 1.824230 CTCAGTAGCTCTGCAGGAAGT 59.176 52.381 15.13 0.00 43.32 3.01
398 399 1.547820 TCAGTAGCTCTGCAGGAAGTG 59.452 52.381 15.13 9.94 43.32 3.16
408 409 1.895798 TGCAGGAAGTGAGTGAGTAGG 59.104 52.381 0.00 0.00 0.00 3.18
409 410 1.896465 GCAGGAAGTGAGTGAGTAGGT 59.104 52.381 0.00 0.00 0.00 3.08
412 413 1.826096 GGAAGTGAGTGAGTAGGTCCC 59.174 57.143 0.00 0.00 0.00 4.46
413 414 2.557901 GGAAGTGAGTGAGTAGGTCCCT 60.558 54.545 0.00 0.00 0.00 4.20
415 416 3.655615 AGTGAGTGAGTAGGTCCCTAG 57.344 52.381 0.00 0.00 0.00 3.02
417 418 1.310904 GAGTGAGTAGGTCCCTAGCG 58.689 60.000 0.00 0.00 0.00 4.26
418 419 0.624785 AGTGAGTAGGTCCCTAGCGT 59.375 55.000 0.00 0.00 0.00 5.07
419 420 0.739561 GTGAGTAGGTCCCTAGCGTG 59.260 60.000 0.00 0.00 0.00 5.34
420 421 0.330604 TGAGTAGGTCCCTAGCGTGT 59.669 55.000 0.00 0.00 0.00 4.49
421 422 1.561076 TGAGTAGGTCCCTAGCGTGTA 59.439 52.381 0.00 0.00 0.00 2.90
424 425 3.635836 GAGTAGGTCCCTAGCGTGTATTT 59.364 47.826 0.00 0.00 0.00 1.40
425 426 4.028825 AGTAGGTCCCTAGCGTGTATTTT 58.971 43.478 0.00 0.00 0.00 1.82
426 427 3.261981 AGGTCCCTAGCGTGTATTTTG 57.738 47.619 0.00 0.00 0.00 2.44
427 428 1.669265 GGTCCCTAGCGTGTATTTTGC 59.331 52.381 0.00 0.00 0.00 3.68
428 429 2.352388 GTCCCTAGCGTGTATTTTGCA 58.648 47.619 0.00 0.00 0.00 4.08
429 430 2.943033 GTCCCTAGCGTGTATTTTGCAT 59.057 45.455 0.00 0.00 0.00 3.96
430 431 3.002348 GTCCCTAGCGTGTATTTTGCATC 59.998 47.826 0.00 0.00 0.00 3.91
432 433 4.100344 TCCCTAGCGTGTATTTTGCATCTA 59.900 41.667 0.00 0.00 0.00 1.98
433 434 4.211374 CCCTAGCGTGTATTTTGCATCTAC 59.789 45.833 0.00 0.00 0.00 2.59
434 435 5.050490 CCTAGCGTGTATTTTGCATCTACT 58.950 41.667 0.00 0.00 0.00 2.57
435 436 5.175856 CCTAGCGTGTATTTTGCATCTACTC 59.824 44.000 0.00 0.00 0.00 2.59
436 437 4.759782 AGCGTGTATTTTGCATCTACTCT 58.240 39.130 0.00 0.00 0.00 3.24
437 438 5.902681 AGCGTGTATTTTGCATCTACTCTA 58.097 37.500 0.00 0.00 0.00 2.43
438 439 5.749109 AGCGTGTATTTTGCATCTACTCTAC 59.251 40.000 0.00 0.00 0.00 2.59
439 440 5.050972 GCGTGTATTTTGCATCTACTCTACC 60.051 44.000 0.00 0.00 0.00 3.18
440 441 5.173312 CGTGTATTTTGCATCTACTCTACCG 59.827 44.000 0.00 0.00 0.00 4.02
441 442 6.040878 GTGTATTTTGCATCTACTCTACCGT 58.959 40.000 0.00 0.00 0.00 4.83
442 443 6.019801 GTGTATTTTGCATCTACTCTACCGTG 60.020 42.308 0.00 0.00 0.00 4.94
458 459 1.432514 CGTGTCTCATGAACCCACTG 58.567 55.000 13.85 6.86 0.00 3.66
473 474 4.659115 ACCCACTGGTAAAGGTGAAATAC 58.341 43.478 0.00 0.00 45.45 1.89
479 480 7.280205 CCACTGGTAAAGGTGAAATACATAGAC 59.720 40.741 0.00 0.00 35.69 2.59
484 490 7.494952 GGTAAAGGTGAAATACATAGACCTCAC 59.505 40.741 0.00 0.00 33.92 3.51
494 500 5.037383 ACATAGACCTCACTACGATCAGA 57.963 43.478 0.00 0.00 0.00 3.27
521 527 2.534042 TGTTCAAAACCACCCAGGAA 57.466 45.000 0.00 0.00 41.22 3.36
522 528 2.821437 TGTTCAAAACCACCCAGGAAA 58.179 42.857 0.00 0.00 41.22 3.13
523 529 2.763448 TGTTCAAAACCACCCAGGAAAG 59.237 45.455 0.00 0.00 41.22 2.62
524 530 3.028130 GTTCAAAACCACCCAGGAAAGA 58.972 45.455 0.00 0.00 41.22 2.52
525 531 3.611025 TCAAAACCACCCAGGAAAGAT 57.389 42.857 0.00 0.00 41.22 2.40
526 532 3.230134 TCAAAACCACCCAGGAAAGATG 58.770 45.455 0.00 0.00 41.22 2.90
527 533 3.117322 TCAAAACCACCCAGGAAAGATGA 60.117 43.478 0.00 0.00 41.22 2.92
528 534 2.887151 AACCACCCAGGAAAGATGAG 57.113 50.000 0.00 0.00 41.22 2.90
529 535 0.329596 ACCACCCAGGAAAGATGAGC 59.670 55.000 0.00 0.00 41.22 4.26
530 536 0.622665 CCACCCAGGAAAGATGAGCT 59.377 55.000 0.00 0.00 41.22 4.09
543 570 4.525024 AAGATGAGCTTAGAGCAAATGCT 58.475 39.130 7.80 7.80 45.56 3.79
574 601 4.446385 TGTATTTTCAAGTCGAACCAGACG 59.554 41.667 0.00 0.00 45.26 4.18
590 617 3.384789 CCAGACGAGGTCTCATTCCATTA 59.615 47.826 0.00 0.00 41.37 1.90
655 682 1.499056 GCAGACAAGACATGGTGCG 59.501 57.895 0.00 0.00 34.60 5.34
736 772 6.282930 CACAACCAAATGAATTTCCAACTCT 58.717 36.000 0.00 0.00 0.00 3.24
737 773 6.201425 CACAACCAAATGAATTTCCAACTCTG 59.799 38.462 0.00 0.00 0.00 3.35
738 774 4.886579 ACCAAATGAATTTCCAACTCTGC 58.113 39.130 0.00 0.00 0.00 4.26
739 775 4.344679 ACCAAATGAATTTCCAACTCTGCA 59.655 37.500 0.00 0.00 0.00 4.41
740 776 4.687483 CCAAATGAATTTCCAACTCTGCAC 59.313 41.667 0.00 0.00 0.00 4.57
741 777 4.525912 AATGAATTTCCAACTCTGCACC 57.474 40.909 0.00 0.00 0.00 5.01
742 778 3.228188 TGAATTTCCAACTCTGCACCT 57.772 42.857 0.00 0.00 0.00 4.00
743 779 3.565307 TGAATTTCCAACTCTGCACCTT 58.435 40.909 0.00 0.00 0.00 3.50
744 780 3.318839 TGAATTTCCAACTCTGCACCTTG 59.681 43.478 0.00 0.00 0.00 3.61
745 781 2.727123 TTTCCAACTCTGCACCTTGA 57.273 45.000 0.00 0.00 0.00 3.02
746 782 2.260844 TTCCAACTCTGCACCTTGAG 57.739 50.000 0.00 0.00 36.47 3.02
747 783 0.250467 TCCAACTCTGCACCTTGAGC 60.250 55.000 0.83 0.00 33.92 4.26
748 784 1.239968 CCAACTCTGCACCTTGAGCC 61.240 60.000 0.83 0.00 33.92 4.70
749 785 0.535780 CAACTCTGCACCTTGAGCCA 60.536 55.000 0.83 0.00 33.92 4.75
750 786 0.403271 AACTCTGCACCTTGAGCCAT 59.597 50.000 0.83 0.00 33.92 4.40
751 787 0.403271 ACTCTGCACCTTGAGCCATT 59.597 50.000 0.83 0.00 33.92 3.16
752 788 1.093159 CTCTGCACCTTGAGCCATTC 58.907 55.000 0.00 0.00 0.00 2.67
755 791 1.000396 GCACCTTGAGCCATTCCCT 60.000 57.895 0.00 0.00 0.00 4.20
757 793 0.329261 CACCTTGAGCCATTCCCTGA 59.671 55.000 0.00 0.00 0.00 3.86
771 807 3.795688 TCCCTGAAAGCATTTGTCTCT 57.204 42.857 0.00 0.00 39.27 3.10
772 808 4.908601 TCCCTGAAAGCATTTGTCTCTA 57.091 40.909 0.00 0.00 39.27 2.43
773 809 4.836825 TCCCTGAAAGCATTTGTCTCTAG 58.163 43.478 0.00 0.00 39.27 2.43
784 820 3.543680 TTGTCTCTAGTATTGGCTGGC 57.456 47.619 0.00 0.00 0.00 4.85
802 838 2.031870 GGCAAGGACAAAAAGGTCAGT 58.968 47.619 0.00 0.00 39.59 3.41
821 857 5.007682 TCAGTCTGCCCTACCAAATAAAAC 58.992 41.667 0.00 0.00 0.00 2.43
857 893 4.782019 TGTTGCAGCCTTAAACCTTATG 57.218 40.909 0.00 0.00 0.00 1.90
944 995 4.563184 CAGCAATACAGAAAGACCTACGAC 59.437 45.833 0.00 0.00 0.00 4.34
1017 1068 4.386049 GTGAACATGTACTCAAGAAGGACG 59.614 45.833 0.00 0.00 42.39 4.79
1035 1086 1.621301 CGCTGCTTCACACTCCTTCG 61.621 60.000 0.00 0.00 0.00 3.79
1179 1245 1.519455 GGGGCTCAACTCGATCGTG 60.519 63.158 15.94 15.53 0.00 4.35
1305 1371 0.668535 TGCCGATCATGGTCTACTCG 59.331 55.000 4.09 0.00 0.00 4.18
1308 1374 0.039074 CGATCATGGTCTACTCGGCC 60.039 60.000 4.09 0.00 0.00 6.13
1389 1455 4.268687 GAGCACGTCAAGGTCCTG 57.731 61.111 0.00 0.00 0.00 3.86
1545 1611 2.506438 GTAGCGCGTGTCCACTCC 60.506 66.667 8.43 0.00 0.00 3.85
1590 1656 2.676342 GGGTTTGATCACCACGTATGAC 59.324 50.000 0.00 0.77 38.79 3.06
1595 1661 6.148150 GGTTTGATCACCACGTATGACTTTTA 59.852 38.462 0.00 0.00 36.73 1.52
1596 1662 6.961359 TTGATCACCACGTATGACTTTTAG 57.039 37.500 0.00 0.00 0.00 1.85
1597 1663 6.275494 TGATCACCACGTATGACTTTTAGA 57.725 37.500 3.94 0.00 0.00 2.10
1598 1664 6.330278 TGATCACCACGTATGACTTTTAGAG 58.670 40.000 3.94 0.00 0.00 2.43
1599 1665 4.491676 TCACCACGTATGACTTTTAGAGC 58.508 43.478 0.00 0.00 0.00 4.09
1600 1666 3.617263 CACCACGTATGACTTTTAGAGCC 59.383 47.826 0.00 0.00 0.00 4.70
1601 1667 3.259876 ACCACGTATGACTTTTAGAGCCA 59.740 43.478 0.00 0.00 0.00 4.75
1602 1668 4.081087 ACCACGTATGACTTTTAGAGCCAT 60.081 41.667 0.00 0.00 0.00 4.40
1603 1669 4.508124 CCACGTATGACTTTTAGAGCCATC 59.492 45.833 0.00 0.00 0.00 3.51
1604 1670 5.109210 CACGTATGACTTTTAGAGCCATCA 58.891 41.667 0.00 0.00 0.00 3.07
1605 1671 5.755375 CACGTATGACTTTTAGAGCCATCAT 59.245 40.000 0.00 0.00 0.00 2.45
1606 1672 5.755375 ACGTATGACTTTTAGAGCCATCATG 59.245 40.000 0.00 0.00 0.00 3.07
1656 1722 1.202722 ACGGAGTGGGGTGTAAAACAG 60.203 52.381 0.00 0.00 42.51 3.16
1710 1776 6.209361 CCAAAAACTGGCTTCTAGTTTCTTC 58.791 40.000 8.40 0.00 44.98 2.87
1726 1796 1.819288 TCTTCTAGTCCTGTTGCTCCG 59.181 52.381 0.00 0.00 0.00 4.63
1753 1828 5.828859 ACATTGTGTAGTCCCTAGCTAGTAG 59.171 44.000 19.31 10.46 0.00 2.57
1760 1835 3.117436 AGTCCCTAGCTAGTAGTGGAAGG 60.117 52.174 19.31 10.51 32.76 3.46
1763 1838 3.637694 CCCTAGCTAGTAGTGGAAGGAAC 59.362 52.174 19.31 0.00 0.00 3.62
1766 1841 4.048970 AGCTAGTAGTGGAAGGAACTGA 57.951 45.455 0.00 0.00 40.86 3.41
2014 2094 1.731160 GCAGCATATTCTCGAGCCATC 59.269 52.381 7.81 0.00 0.00 3.51
2030 2113 1.842562 CCATCACCAAGAGATCAGGGT 59.157 52.381 0.00 0.00 0.00 4.34
2032 2115 1.573108 TCACCAAGAGATCAGGGTCC 58.427 55.000 0.00 0.00 0.00 4.46
2051 2143 4.332268 GGTCCTGTAGTCTACTACTTCGTG 59.668 50.000 18.44 5.67 46.74 4.35
2077 2170 6.293135 GCTAAGCCTTAGTGATCAGTTTATGC 60.293 42.308 8.68 7.08 35.66 3.14
2080 2173 4.780815 CCTTAGTGATCAGTTTATGCCCA 58.219 43.478 8.68 0.00 0.00 5.36
2082 2175 2.632377 AGTGATCAGTTTATGCCCACG 58.368 47.619 0.00 0.00 36.60 4.94
2142 3260 1.257750 TGCTGCTCGTCTACATGGGT 61.258 55.000 0.00 0.00 0.00 4.51
2193 3311 4.508124 GTCGCATTGCTACTGCTTAACTAT 59.492 41.667 7.12 0.00 40.48 2.12
2305 3423 5.220624 CGATGGAAAAGCTGAGATCTTTCTG 60.221 44.000 0.00 0.00 33.06 3.02
2312 3430 2.096174 GCTGAGATCTTTCTGCAGCTTG 59.904 50.000 20.51 0.86 42.96 4.01
2402 3520 5.886960 AGAATGTAGTGATTGTTTCCTGC 57.113 39.130 0.00 0.00 0.00 4.85
2418 3536 3.157087 TCCTGCACCATTCTTCTTTTCC 58.843 45.455 0.00 0.00 0.00 3.13
2442 3560 6.531948 CCGAGGAAAGTTGTACTATTCTTCTG 59.468 42.308 0.00 0.00 28.89 3.02
2452 3570 2.239907 ACTATTCTTCTGAAGGCCCCAC 59.760 50.000 16.83 0.00 35.44 4.61
2463 3581 1.077429 GGCCCCACTCACAGGATTC 60.077 63.158 0.00 0.00 0.00 2.52
2472 3590 2.094494 ACTCACAGGATTCGTAGTGCTG 60.094 50.000 4.94 4.94 40.41 4.41
2473 3591 1.002366 CACAGGATTCGTAGTGCTGC 58.998 55.000 0.00 0.00 38.44 5.25
2517 3635 5.125367 ACAATAATGGGTAAAGGGTCTCC 57.875 43.478 0.00 0.00 0.00 3.71
2534 3652 5.010282 GGTCTCCTTGAATTATTGGTGTGT 58.990 41.667 0.00 0.00 0.00 3.72
2535 3653 5.106157 GGTCTCCTTGAATTATTGGTGTGTG 60.106 44.000 0.00 0.00 0.00 3.82
2543 3661 6.804677 TGAATTATTGGTGTGTGATAATGGC 58.195 36.000 0.00 0.00 0.00 4.40
2552 3670 7.116075 TGGTGTGTGATAATGGCTAATAGTTT 58.884 34.615 0.00 0.00 0.00 2.66
2553 3671 7.613801 TGGTGTGTGATAATGGCTAATAGTTTT 59.386 33.333 0.00 0.00 0.00 2.43
2554 3672 8.129211 GGTGTGTGATAATGGCTAATAGTTTTC 58.871 37.037 0.00 0.00 0.00 2.29
2555 3673 8.893727 GTGTGTGATAATGGCTAATAGTTTTCT 58.106 33.333 0.00 0.00 0.00 2.52
2556 3674 9.461312 TGTGTGATAATGGCTAATAGTTTTCTT 57.539 29.630 0.00 0.00 0.00 2.52
2557 3675 9.937175 GTGTGATAATGGCTAATAGTTTTCTTC 57.063 33.333 0.00 0.00 0.00 2.87
2558 3676 8.826710 TGTGATAATGGCTAATAGTTTTCTTCG 58.173 33.333 0.00 0.00 0.00 3.79
2559 3677 7.798982 GTGATAATGGCTAATAGTTTTCTTCGC 59.201 37.037 0.00 0.00 0.00 4.70
2560 3678 7.497579 TGATAATGGCTAATAGTTTTCTTCGCA 59.502 33.333 0.00 0.00 0.00 5.10
2561 3679 6.699575 AATGGCTAATAGTTTTCTTCGCAT 57.300 33.333 0.00 0.00 0.00 4.73
2562 3680 6.699575 ATGGCTAATAGTTTTCTTCGCATT 57.300 33.333 0.00 0.00 0.00 3.56
2563 3681 7.801716 ATGGCTAATAGTTTTCTTCGCATTA 57.198 32.000 0.00 0.00 0.00 1.90
2564 3682 7.618502 TGGCTAATAGTTTTCTTCGCATTAA 57.381 32.000 0.00 0.00 0.00 1.40
2565 3683 7.469260 TGGCTAATAGTTTTCTTCGCATTAAC 58.531 34.615 0.00 0.00 0.00 2.01
2566 3684 6.910972 GGCTAATAGTTTTCTTCGCATTAACC 59.089 38.462 0.00 0.00 0.00 2.85
2567 3685 6.627671 GCTAATAGTTTTCTTCGCATTAACCG 59.372 38.462 0.00 0.00 0.00 4.44
2568 3686 6.490566 AATAGTTTTCTTCGCATTAACCGT 57.509 33.333 0.00 0.00 0.00 4.83
2569 3687 4.141855 AGTTTTCTTCGCATTAACCGTG 57.858 40.909 0.00 0.00 0.00 4.94
2570 3688 2.604969 TTTCTTCGCATTAACCGTGC 57.395 45.000 0.00 0.00 39.18 5.34
2571 3689 0.800012 TTCTTCGCATTAACCGTGCC 59.200 50.000 0.00 0.00 39.39 5.01
2572 3690 0.036765 TCTTCGCATTAACCGTGCCT 60.037 50.000 0.00 0.00 39.39 4.75
2573 3691 0.373716 CTTCGCATTAACCGTGCCTC 59.626 55.000 0.00 0.00 39.39 4.70
2574 3692 0.036765 TTCGCATTAACCGTGCCTCT 60.037 50.000 0.00 0.00 39.39 3.69
2575 3693 0.818938 TCGCATTAACCGTGCCTCTA 59.181 50.000 0.00 0.00 39.39 2.43
2576 3694 0.928229 CGCATTAACCGTGCCTCTAC 59.072 55.000 0.00 0.00 39.39 2.59
2577 3695 1.737696 CGCATTAACCGTGCCTCTACA 60.738 52.381 0.00 0.00 39.39 2.74
2578 3696 1.933853 GCATTAACCGTGCCTCTACAG 59.066 52.381 0.00 0.00 36.61 2.74
2579 3697 2.550978 CATTAACCGTGCCTCTACAGG 58.449 52.381 0.00 0.00 43.82 4.00
2596 3714 3.356529 CAGGCTTTCTGTCCTTATGGT 57.643 47.619 0.00 0.00 38.64 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 4.745751 TTAACGCCCCGTCCGCTG 62.746 66.667 0.00 0.00 39.99 5.18
16 17 4.747529 GTTAACGCCCCGTCCGCT 62.748 66.667 0.00 0.00 39.99 5.52
19 20 4.067913 TCCGTTAACGCCCCGTCC 62.068 66.667 22.43 0.00 39.99 4.79
20 21 2.810887 GTCCGTTAACGCCCCGTC 60.811 66.667 22.43 3.22 39.99 4.79
21 22 4.722855 CGTCCGTTAACGCCCCGT 62.723 66.667 22.43 0.00 43.97 5.28
22 23 4.722855 ACGTCCGTTAACGCCCCG 62.723 66.667 22.43 22.20 46.40 5.73
23 24 2.810887 GACGTCCGTTAACGCCCC 60.811 66.667 22.43 10.55 46.40 5.80
24 25 2.049248 TGACGTCCGTTAACGCCC 60.049 61.111 22.43 12.95 46.40 6.13
25 26 2.723719 GCTGACGTCCGTTAACGCC 61.724 63.158 22.43 13.30 46.40 5.68
26 27 2.767697 GCTGACGTCCGTTAACGC 59.232 61.111 22.43 8.92 46.40 4.84
28 29 2.767697 GCGCTGACGTCCGTTAAC 59.232 61.111 14.12 0.00 42.83 2.01
29 30 2.801996 CGCGCTGACGTCCGTTAA 60.802 61.111 14.12 0.00 42.83 2.01
54 55 3.803082 CACGCTGGCCAATGGACG 61.803 66.667 7.01 8.56 29.56 4.79
55 56 3.443045 CCACGCTGGCCAATGGAC 61.443 66.667 20.95 0.00 33.80 4.02
64 65 1.148157 CGAATCAGTAGCCACGCTGG 61.148 60.000 0.00 0.25 40.10 4.85
65 66 1.756375 GCGAATCAGTAGCCACGCTG 61.756 60.000 0.00 0.00 40.10 5.18
66 67 1.519455 GCGAATCAGTAGCCACGCT 60.519 57.895 0.00 0.00 43.41 5.07
67 68 2.860628 CGCGAATCAGTAGCCACGC 61.861 63.158 0.00 0.00 42.07 5.34
68 69 2.230940 CCGCGAATCAGTAGCCACG 61.231 63.158 8.23 0.00 0.00 4.94
69 70 1.883084 CCCGCGAATCAGTAGCCAC 60.883 63.158 8.23 0.00 0.00 5.01
70 71 2.499205 CCCGCGAATCAGTAGCCA 59.501 61.111 8.23 0.00 0.00 4.75
71 72 2.967615 GCCCGCGAATCAGTAGCC 60.968 66.667 8.23 0.00 0.00 3.93
72 73 2.967615 GGCCCGCGAATCAGTAGC 60.968 66.667 8.23 0.00 0.00 3.58
73 74 2.280186 GGGCCCGCGAATCAGTAG 60.280 66.667 5.69 0.00 0.00 2.57
74 75 2.661066 TTGGGCCCGCGAATCAGTA 61.661 57.895 19.37 0.00 0.00 2.74
75 76 4.028490 TTGGGCCCGCGAATCAGT 62.028 61.111 19.37 0.00 0.00 3.41
76 77 3.508840 GTTGGGCCCGCGAATCAG 61.509 66.667 19.37 0.00 0.00 2.90
85 86 3.282374 AATCTGACCGGTTGGGCCC 62.282 63.158 17.59 17.59 46.01 5.80
86 87 1.749258 GAATCTGACCGGTTGGGCC 60.749 63.158 9.42 0.00 46.01 5.80
88 89 1.449601 CCGAATCTGACCGGTTGGG 60.450 63.158 9.42 0.00 40.78 4.12
89 90 1.449601 CCCGAATCTGACCGGTTGG 60.450 63.158 9.42 4.79 43.93 3.77
90 91 1.449601 CCCCGAATCTGACCGGTTG 60.450 63.158 9.42 5.22 43.93 3.77
91 92 1.486145 AACCCCGAATCTGACCGGTT 61.486 55.000 9.42 0.00 43.93 4.44
92 93 0.615544 TAACCCCGAATCTGACCGGT 60.616 55.000 6.92 6.92 43.93 5.28
93 94 0.104304 CTAACCCCGAATCTGACCGG 59.896 60.000 0.00 0.00 44.94 5.28
94 95 0.529992 GCTAACCCCGAATCTGACCG 60.530 60.000 0.00 0.00 0.00 4.79
95 96 0.529992 CGCTAACCCCGAATCTGACC 60.530 60.000 0.00 0.00 0.00 4.02
96 97 1.152383 GCGCTAACCCCGAATCTGAC 61.152 60.000 0.00 0.00 0.00 3.51
97 98 1.143183 GCGCTAACCCCGAATCTGA 59.857 57.895 0.00 0.00 0.00 3.27
98 99 1.153449 TGCGCTAACCCCGAATCTG 60.153 57.895 9.73 0.00 0.00 2.90
99 100 1.144057 CTGCGCTAACCCCGAATCT 59.856 57.895 9.73 0.00 0.00 2.40
100 101 2.534903 GCTGCGCTAACCCCGAATC 61.535 63.158 9.73 0.00 0.00 2.52
101 102 2.513897 GCTGCGCTAACCCCGAAT 60.514 61.111 9.73 0.00 0.00 3.34
102 103 4.770874 GGCTGCGCTAACCCCGAA 62.771 66.667 9.73 0.00 0.00 4.30
105 106 4.770874 TTCGGCTGCGCTAACCCC 62.771 66.667 9.73 0.39 0.00 4.95
106 107 3.195698 CTTCGGCTGCGCTAACCC 61.196 66.667 9.73 2.35 0.00 4.11
107 108 3.865830 GCTTCGGCTGCGCTAACC 61.866 66.667 9.73 6.39 38.08 2.85
108 109 4.210304 CGCTTCGGCTGCGCTAAC 62.210 66.667 9.73 0.00 46.72 2.34
115 116 2.353435 GAAATCGCTCGCTTCGGCTG 62.353 60.000 0.00 0.00 39.13 4.85
116 117 2.125512 AAATCGCTCGCTTCGGCT 60.126 55.556 0.00 0.00 39.13 5.52
117 118 2.321400 GAAATCGCTCGCTTCGGC 59.679 61.111 0.00 0.00 37.65 5.54
118 119 2.615618 CGAAATCGCTCGCTTCGG 59.384 61.111 14.25 2.31 38.57 4.30
128 129 1.625616 ACTACCAACTCGCGAAATCG 58.374 50.000 11.33 0.00 43.27 3.34
129 130 4.400036 AAAACTACCAACTCGCGAAATC 57.600 40.909 11.33 0.00 0.00 2.17
130 131 4.823790 AAAAACTACCAACTCGCGAAAT 57.176 36.364 11.33 0.00 0.00 2.17
148 149 2.286872 TGGACTAAACCGCGACAAAAA 58.713 42.857 8.23 0.00 0.00 1.94
149 150 1.950828 TGGACTAAACCGCGACAAAA 58.049 45.000 8.23 0.00 0.00 2.44
150 151 1.950828 TTGGACTAAACCGCGACAAA 58.049 45.000 8.23 0.00 0.00 2.83
151 152 1.950828 TTTGGACTAAACCGCGACAA 58.049 45.000 8.23 0.00 0.00 3.18
152 153 2.172851 ATTTGGACTAAACCGCGACA 57.827 45.000 8.23 0.00 0.00 4.35
153 154 3.231160 CAAATTTGGACTAAACCGCGAC 58.769 45.455 8.23 0.00 0.00 5.19
154 155 3.546002 CAAATTTGGACTAAACCGCGA 57.454 42.857 8.23 0.00 0.00 5.87
167 168 6.428385 TTGTGCCAAAAACTACCAAATTTG 57.572 33.333 11.40 11.40 33.62 2.32
168 169 7.454260 TTTTGTGCCAAAAACTACCAAATTT 57.546 28.000 9.70 0.00 0.00 1.82
169 170 7.466590 CGATTTTGTGCCAAAAACTACCAAATT 60.467 33.333 14.37 0.00 32.12 1.82
170 171 6.018343 CGATTTTGTGCCAAAAACTACCAAAT 60.018 34.615 14.37 0.00 32.12 2.32
171 172 5.292101 CGATTTTGTGCCAAAAACTACCAAA 59.708 36.000 14.37 0.00 32.12 3.28
172 173 4.806247 CGATTTTGTGCCAAAAACTACCAA 59.194 37.500 14.37 0.00 32.12 3.67
173 174 4.142138 ACGATTTTGTGCCAAAAACTACCA 60.142 37.500 14.37 0.00 32.12 3.25
174 175 4.364860 ACGATTTTGTGCCAAAAACTACC 58.635 39.130 14.37 4.70 32.12 3.18
175 176 6.432107 TCTACGATTTTGTGCCAAAAACTAC 58.568 36.000 14.37 7.90 32.12 2.73
176 177 6.261381 ACTCTACGATTTTGTGCCAAAAACTA 59.739 34.615 14.37 7.70 32.12 2.24
177 178 5.067283 ACTCTACGATTTTGTGCCAAAAACT 59.933 36.000 14.37 2.87 32.12 2.66
178 179 5.173131 CACTCTACGATTTTGTGCCAAAAAC 59.827 40.000 14.37 11.66 32.12 2.43
179 180 5.277825 CACTCTACGATTTTGTGCCAAAAA 58.722 37.500 14.37 6.63 33.76 1.94
180 181 4.261405 CCACTCTACGATTTTGTGCCAAAA 60.261 41.667 13.22 13.22 0.00 2.44
181 182 3.252215 CCACTCTACGATTTTGTGCCAAA 59.748 43.478 0.00 0.00 0.00 3.28
182 183 2.811431 CCACTCTACGATTTTGTGCCAA 59.189 45.455 0.00 0.00 0.00 4.52
183 184 2.224426 ACCACTCTACGATTTTGTGCCA 60.224 45.455 0.00 0.00 0.00 4.92
184 185 2.423577 ACCACTCTACGATTTTGTGCC 58.576 47.619 0.00 0.00 0.00 5.01
185 186 4.243270 ACTACCACTCTACGATTTTGTGC 58.757 43.478 0.00 0.00 0.00 4.57
186 187 6.780706 AAACTACCACTCTACGATTTTGTG 57.219 37.500 0.00 0.00 0.00 3.33
187 188 7.306983 CGAAAAACTACCACTCTACGATTTTGT 60.307 37.037 0.00 0.00 0.00 2.83
188 189 7.007697 CGAAAAACTACCACTCTACGATTTTG 58.992 38.462 0.00 0.00 0.00 2.44
189 190 6.703165 ACGAAAAACTACCACTCTACGATTTT 59.297 34.615 0.00 0.00 0.00 1.82
190 191 6.218746 ACGAAAAACTACCACTCTACGATTT 58.781 36.000 0.00 0.00 0.00 2.17
191 192 5.776744 ACGAAAAACTACCACTCTACGATT 58.223 37.500 0.00 0.00 0.00 3.34
192 193 5.048504 TGACGAAAAACTACCACTCTACGAT 60.049 40.000 0.00 0.00 0.00 3.73
193 194 4.275689 TGACGAAAAACTACCACTCTACGA 59.724 41.667 0.00 0.00 0.00 3.43
194 195 4.380974 GTGACGAAAAACTACCACTCTACG 59.619 45.833 0.00 0.00 0.00 3.51
195 196 4.380974 CGTGACGAAAAACTACCACTCTAC 59.619 45.833 0.00 0.00 0.00 2.59
196 197 4.036734 ACGTGACGAAAAACTACCACTCTA 59.963 41.667 13.70 0.00 0.00 2.43
197 198 3.181483 ACGTGACGAAAAACTACCACTCT 60.181 43.478 13.70 0.00 0.00 3.24
198 199 3.118542 ACGTGACGAAAAACTACCACTC 58.881 45.455 13.70 0.00 0.00 3.51
199 200 3.169355 ACGTGACGAAAAACTACCACT 57.831 42.857 13.70 0.00 0.00 4.00
200 201 3.931285 AACGTGACGAAAAACTACCAC 57.069 42.857 13.70 0.00 0.00 4.16
201 202 3.309410 GGAAACGTGACGAAAAACTACCA 59.691 43.478 13.70 0.00 0.00 3.25
202 203 3.865329 GGAAACGTGACGAAAAACTACC 58.135 45.455 13.70 0.00 0.00 3.18
218 219 4.823790 AACTACCACAATTGACGGAAAC 57.176 40.909 20.70 0.00 0.00 2.78
219 220 5.838531 AAAACTACCACAATTGACGGAAA 57.161 34.783 20.70 10.29 0.00 3.13
220 221 5.450688 CCAAAAACTACCACAATTGACGGAA 60.451 40.000 20.70 0.31 0.00 4.30
221 222 4.036971 CCAAAAACTACCACAATTGACGGA 59.963 41.667 20.70 3.96 0.00 4.69
222 223 4.295051 CCAAAAACTACCACAATTGACGG 58.705 43.478 13.59 14.19 0.00 4.79
223 224 3.733727 GCCAAAAACTACCACAATTGACG 59.266 43.478 13.59 3.68 0.00 4.35
224 225 4.944048 AGCCAAAAACTACCACAATTGAC 58.056 39.130 13.59 0.00 0.00 3.18
225 226 6.716934 TTAGCCAAAAACTACCACAATTGA 57.283 33.333 13.59 0.00 0.00 2.57
226 227 7.961325 ATTTAGCCAAAAACTACCACAATTG 57.039 32.000 3.24 3.24 0.00 2.32
227 228 8.866093 AGTATTTAGCCAAAAACTACCACAATT 58.134 29.630 0.00 0.00 0.00 2.32
228 229 8.417273 AGTATTTAGCCAAAAACTACCACAAT 57.583 30.769 0.00 0.00 0.00 2.71
229 230 7.722285 AGAGTATTTAGCCAAAAACTACCACAA 59.278 33.333 0.00 0.00 0.00 3.33
230 231 7.174253 CAGAGTATTTAGCCAAAAACTACCACA 59.826 37.037 0.00 0.00 0.00 4.17
231 232 7.174426 ACAGAGTATTTAGCCAAAAACTACCAC 59.826 37.037 0.00 0.00 0.00 4.16
232 233 7.228590 ACAGAGTATTTAGCCAAAAACTACCA 58.771 34.615 0.00 0.00 0.00 3.25
233 234 7.683437 ACAGAGTATTTAGCCAAAAACTACC 57.317 36.000 0.00 0.00 0.00 3.18
234 235 9.608617 GAAACAGAGTATTTAGCCAAAAACTAC 57.391 33.333 0.00 0.00 0.00 2.73
235 236 8.789762 GGAAACAGAGTATTTAGCCAAAAACTA 58.210 33.333 0.00 0.00 0.00 2.24
236 237 7.521585 CGGAAACAGAGTATTTAGCCAAAAACT 60.522 37.037 0.00 0.00 0.00 2.66
237 238 6.581166 CGGAAACAGAGTATTTAGCCAAAAAC 59.419 38.462 0.00 0.00 0.00 2.43
238 239 6.263617 ACGGAAACAGAGTATTTAGCCAAAAA 59.736 34.615 0.00 0.00 0.00 1.94
239 240 5.766174 ACGGAAACAGAGTATTTAGCCAAAA 59.234 36.000 0.00 0.00 0.00 2.44
240 241 5.310451 ACGGAAACAGAGTATTTAGCCAAA 58.690 37.500 0.00 0.00 0.00 3.28
241 242 4.901868 ACGGAAACAGAGTATTTAGCCAA 58.098 39.130 0.00 0.00 0.00 4.52
242 243 4.546829 ACGGAAACAGAGTATTTAGCCA 57.453 40.909 0.00 0.00 0.00 4.75
243 244 6.592994 AGTTTACGGAAACAGAGTATTTAGCC 59.407 38.462 24.66 0.00 46.30 3.93
244 245 7.592439 AGTTTACGGAAACAGAGTATTTAGC 57.408 36.000 24.66 0.00 46.30 3.09
245 246 7.955864 GCAAGTTTACGGAAACAGAGTATTTAG 59.044 37.037 24.66 5.46 46.30 1.85
246 247 7.441760 TGCAAGTTTACGGAAACAGAGTATTTA 59.558 33.333 24.66 0.00 46.30 1.40
247 248 6.261381 TGCAAGTTTACGGAAACAGAGTATTT 59.739 34.615 24.66 5.96 46.30 1.40
248 249 5.761234 TGCAAGTTTACGGAAACAGAGTATT 59.239 36.000 24.66 6.68 46.30 1.89
249 250 5.302360 TGCAAGTTTACGGAAACAGAGTAT 58.698 37.500 24.66 0.02 46.30 2.12
250 251 4.695396 TGCAAGTTTACGGAAACAGAGTA 58.305 39.130 24.66 10.57 46.30 2.59
251 252 3.537580 TGCAAGTTTACGGAAACAGAGT 58.462 40.909 24.66 1.20 46.30 3.24
252 253 3.058914 CCTGCAAGTTTACGGAAACAGAG 60.059 47.826 24.66 14.29 46.30 3.35
253 254 2.875933 CCTGCAAGTTTACGGAAACAGA 59.124 45.455 24.66 4.89 46.30 3.41
254 255 2.875933 TCCTGCAAGTTTACGGAAACAG 59.124 45.455 24.66 16.99 46.30 3.16
294 295 2.872038 GCCACCGAGAGAGAACAACAAT 60.872 50.000 0.00 0.00 0.00 2.71
310 311 5.008712 GCCTAAGTTCATTAACTATGCCACC 59.991 44.000 0.00 0.00 45.37 4.61
336 337 4.476479 ACTTGAGAAATCCCTCTGGCTTAT 59.524 41.667 0.00 0.00 34.38 1.73
338 339 2.646798 ACTTGAGAAATCCCTCTGGCTT 59.353 45.455 0.00 0.00 34.38 4.35
340 341 2.026822 TGACTTGAGAAATCCCTCTGGC 60.027 50.000 0.00 0.00 34.38 4.85
341 342 3.262915 AGTGACTTGAGAAATCCCTCTGG 59.737 47.826 0.00 0.00 34.38 3.86
343 344 3.262915 CCAGTGACTTGAGAAATCCCTCT 59.737 47.826 0.00 0.00 34.38 3.69
344 345 3.604582 CCAGTGACTTGAGAAATCCCTC 58.395 50.000 0.00 0.00 0.00 4.30
345 346 2.307098 CCCAGTGACTTGAGAAATCCCT 59.693 50.000 0.00 0.00 0.00 4.20
346 347 2.305927 TCCCAGTGACTTGAGAAATCCC 59.694 50.000 0.00 0.00 0.00 3.85
348 349 4.646572 AGTTCCCAGTGACTTGAGAAATC 58.353 43.478 0.00 0.00 0.00 2.17
349 350 4.713792 AGTTCCCAGTGACTTGAGAAAT 57.286 40.909 0.00 0.00 0.00 2.17
350 351 4.503714 AAGTTCCCAGTGACTTGAGAAA 57.496 40.909 0.00 0.00 34.96 2.52
365 366 6.215495 AGAGCTACTGAGTAATCAAGTTCC 57.785 41.667 5.45 0.00 0.00 3.62
380 381 1.824230 CTCACTTCCTGCAGAGCTACT 59.176 52.381 17.39 0.00 0.00 2.57
381 382 1.548269 ACTCACTTCCTGCAGAGCTAC 59.452 52.381 17.39 0.00 0.00 3.58
382 383 1.547820 CACTCACTTCCTGCAGAGCTA 59.452 52.381 17.39 0.00 0.00 3.32
383 384 0.321021 CACTCACTTCCTGCAGAGCT 59.679 55.000 17.39 0.00 0.00 4.09
384 385 0.319728 TCACTCACTTCCTGCAGAGC 59.680 55.000 17.39 0.00 0.00 4.09
385 386 1.617850 ACTCACTCACTTCCTGCAGAG 59.382 52.381 17.39 8.22 0.00 3.35
386 387 1.709578 ACTCACTCACTTCCTGCAGA 58.290 50.000 17.39 0.00 0.00 4.26
387 388 2.094286 CCTACTCACTCACTTCCTGCAG 60.094 54.545 6.78 6.78 0.00 4.41
388 389 1.895798 CCTACTCACTCACTTCCTGCA 59.104 52.381 0.00 0.00 0.00 4.41
389 390 1.896465 ACCTACTCACTCACTTCCTGC 59.104 52.381 0.00 0.00 0.00 4.85
390 391 2.494073 GGACCTACTCACTCACTTCCTG 59.506 54.545 0.00 0.00 0.00 3.86
391 392 2.557901 GGGACCTACTCACTCACTTCCT 60.558 54.545 0.00 0.00 0.00 3.36
392 393 1.826096 GGGACCTACTCACTCACTTCC 59.174 57.143 0.00 0.00 0.00 3.46
393 394 2.810164 AGGGACCTACTCACTCACTTC 58.190 52.381 0.00 0.00 0.00 3.01
394 395 3.878527 GCTAGGGACCTACTCACTCACTT 60.879 52.174 0.00 0.00 33.25 3.16
395 396 2.357361 GCTAGGGACCTACTCACTCACT 60.357 54.545 0.00 0.00 33.25 3.41
396 397 2.025898 GCTAGGGACCTACTCACTCAC 58.974 57.143 0.00 0.00 33.25 3.51
397 398 1.408405 CGCTAGGGACCTACTCACTCA 60.408 57.143 0.00 0.00 33.25 3.41
398 399 1.310904 CGCTAGGGACCTACTCACTC 58.689 60.000 0.00 0.00 33.25 3.51
408 409 2.352388 TGCAAAATACACGCTAGGGAC 58.648 47.619 14.59 0.00 0.00 4.46
409 410 2.772077 TGCAAAATACACGCTAGGGA 57.228 45.000 14.59 0.00 0.00 4.20
412 413 5.980116 AGAGTAGATGCAAAATACACGCTAG 59.020 40.000 0.00 0.00 0.00 3.42
413 414 5.902681 AGAGTAGATGCAAAATACACGCTA 58.097 37.500 0.00 0.00 0.00 4.26
415 416 5.050972 GGTAGAGTAGATGCAAAATACACGC 60.051 44.000 0.00 0.00 0.00 5.34
417 418 6.019801 CACGGTAGAGTAGATGCAAAATACAC 60.020 42.308 0.00 0.00 0.00 2.90
418 419 6.040247 CACGGTAGAGTAGATGCAAAATACA 58.960 40.000 0.00 0.00 0.00 2.29
419 420 6.040878 ACACGGTAGAGTAGATGCAAAATAC 58.959 40.000 0.00 0.00 0.00 1.89
420 421 6.096423 AGACACGGTAGAGTAGATGCAAAATA 59.904 38.462 0.00 0.00 0.00 1.40
421 422 5.086104 ACACGGTAGAGTAGATGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
424 425 3.353557 AGACACGGTAGAGTAGATGCAA 58.646 45.455 0.00 0.00 0.00 4.08
425 426 2.943690 GAGACACGGTAGAGTAGATGCA 59.056 50.000 0.00 0.00 0.00 3.96
426 427 2.943690 TGAGACACGGTAGAGTAGATGC 59.056 50.000 0.00 0.00 0.00 3.91
427 428 4.816925 TCATGAGACACGGTAGAGTAGATG 59.183 45.833 0.00 0.00 0.00 2.90
428 429 5.037383 TCATGAGACACGGTAGAGTAGAT 57.963 43.478 0.00 0.00 0.00 1.98
429 430 4.482952 TCATGAGACACGGTAGAGTAGA 57.517 45.455 0.00 0.00 0.00 2.59
430 431 4.201930 GGTTCATGAGACACGGTAGAGTAG 60.202 50.000 0.00 0.00 0.00 2.57
432 433 2.492484 GGTTCATGAGACACGGTAGAGT 59.508 50.000 0.00 0.00 0.00 3.24
433 434 2.159226 GGGTTCATGAGACACGGTAGAG 60.159 54.545 0.00 0.00 0.00 2.43
434 435 1.822990 GGGTTCATGAGACACGGTAGA 59.177 52.381 0.00 0.00 0.00 2.59
435 436 1.548719 TGGGTTCATGAGACACGGTAG 59.451 52.381 0.00 0.00 0.00 3.18
436 437 1.274167 GTGGGTTCATGAGACACGGTA 59.726 52.381 9.69 0.00 0.00 4.02
437 438 0.034896 GTGGGTTCATGAGACACGGT 59.965 55.000 9.69 0.00 0.00 4.83
438 439 0.321671 AGTGGGTTCATGAGACACGG 59.678 55.000 15.99 0.00 37.16 4.94
439 440 1.432514 CAGTGGGTTCATGAGACACG 58.567 55.000 15.99 10.22 37.16 4.49
440 441 1.813513 CCAGTGGGTTCATGAGACAC 58.186 55.000 14.85 14.85 0.00 3.67
458 459 7.494952 GTGAGGTCTATGTATTTCACCTTTACC 59.505 40.741 0.00 0.00 31.23 2.85
473 474 5.049749 CAGTCTGATCGTAGTGAGGTCTATG 60.050 48.000 0.00 0.00 0.00 2.23
479 480 3.536570 TCTCAGTCTGATCGTAGTGAGG 58.463 50.000 22.32 10.89 41.52 3.86
484 490 5.884771 TGAACATTCTCAGTCTGATCGTAG 58.115 41.667 2.22 0.00 0.00 3.51
494 500 3.636764 GGGTGGTTTTGAACATTCTCAGT 59.363 43.478 0.00 0.00 0.00 3.41
521 527 4.897025 GCATTTGCTCTAAGCTCATCTT 57.103 40.909 0.11 0.00 42.97 2.40
543 570 3.185594 CGACTTGAAAATACAGTGCCGAA 59.814 43.478 0.00 0.00 0.00 4.30
548 575 5.465390 TCTGGTTCGACTTGAAAATACAGTG 59.535 40.000 0.00 0.00 38.60 3.66
574 601 9.646427 GAACTGTATATAATGGAATGAGACCTC 57.354 37.037 0.00 0.00 0.00 3.85
590 617 4.021016 GGCAAGGAGATCGGAACTGTATAT 60.021 45.833 0.00 0.00 0.00 0.86
736 772 1.304381 GGGAATGGCTCAAGGTGCA 60.304 57.895 0.00 0.00 0.00 4.57
737 773 1.000396 AGGGAATGGCTCAAGGTGC 60.000 57.895 0.00 0.00 0.00 5.01
738 774 0.329261 TCAGGGAATGGCTCAAGGTG 59.671 55.000 0.00 0.00 0.00 4.00
739 775 1.075601 TTCAGGGAATGGCTCAAGGT 58.924 50.000 0.00 0.00 0.00 3.50
740 776 2.097825 CTTTCAGGGAATGGCTCAAGG 58.902 52.381 0.00 0.00 0.00 3.61
741 777 1.475682 GCTTTCAGGGAATGGCTCAAG 59.524 52.381 0.00 0.00 0.00 3.02
742 778 1.203038 TGCTTTCAGGGAATGGCTCAA 60.203 47.619 0.00 0.00 0.00 3.02
743 779 0.405198 TGCTTTCAGGGAATGGCTCA 59.595 50.000 0.00 0.00 0.00 4.26
744 780 1.772836 ATGCTTTCAGGGAATGGCTC 58.227 50.000 0.00 0.00 0.00 4.70
745 781 2.235402 CAAATGCTTTCAGGGAATGGCT 59.765 45.455 0.00 0.00 0.00 4.75
746 782 2.027837 ACAAATGCTTTCAGGGAATGGC 60.028 45.455 0.00 0.00 0.00 4.40
747 783 3.512724 AGACAAATGCTTTCAGGGAATGG 59.487 43.478 0.00 0.00 0.00 3.16
748 784 4.461781 AGAGACAAATGCTTTCAGGGAATG 59.538 41.667 0.00 0.00 0.00 2.67
749 785 4.670765 AGAGACAAATGCTTTCAGGGAAT 58.329 39.130 0.00 0.00 0.00 3.01
750 786 4.104383 AGAGACAAATGCTTTCAGGGAA 57.896 40.909 0.00 0.00 0.00 3.97
751 787 3.795688 AGAGACAAATGCTTTCAGGGA 57.204 42.857 0.00 0.00 0.00 4.20
752 788 4.583871 ACTAGAGACAAATGCTTTCAGGG 58.416 43.478 0.00 0.00 0.00 4.45
755 791 6.094048 GCCAATACTAGAGACAAATGCTTTCA 59.906 38.462 0.00 0.00 0.00 2.69
757 793 6.094603 CAGCCAATACTAGAGACAAATGCTTT 59.905 38.462 0.00 0.00 0.00 3.51
771 807 1.912731 TGTCCTTGCCAGCCAATACTA 59.087 47.619 0.00 0.00 31.91 1.82
772 808 0.698238 TGTCCTTGCCAGCCAATACT 59.302 50.000 0.00 0.00 31.91 2.12
773 809 1.544724 TTGTCCTTGCCAGCCAATAC 58.455 50.000 0.00 0.00 31.91 1.89
784 820 3.243201 GCAGACTGACCTTTTTGTCCTTG 60.243 47.826 6.65 0.00 34.25 3.61
802 838 6.495181 TGAATTGTTTTATTTGGTAGGGCAGA 59.505 34.615 0.00 0.00 0.00 4.26
821 857 2.543012 TGCAACAAAATGGCGTGAATTG 59.457 40.909 0.00 0.00 0.00 2.32
857 893 9.658799 TTATGCTGAAGTATTTATAGGCTCATC 57.341 33.333 0.00 0.00 0.00 2.92
874 910 0.913205 TAAGCCGGGGTTATGCTGAA 59.087 50.000 14.39 0.00 35.08 3.02
876 912 1.202758 TCATAAGCCGGGGTTATGCTG 60.203 52.381 36.76 24.61 46.83 4.41
944 995 0.236449 GTAACCGCAAAGAACGTGGG 59.764 55.000 0.00 0.00 38.40 4.61
1017 1068 0.601311 ACGAAGGAGTGTGAAGCAGC 60.601 55.000 0.00 0.00 0.00 5.25
1089 1155 3.702048 TCGAAGTTGCTCCCCGGG 61.702 66.667 15.80 15.80 0.00 5.73
1305 1371 4.722700 TTGAGCTTCAGCCCGGCC 62.723 66.667 5.55 0.00 43.38 6.13
1308 1374 2.328099 GGTGTTGAGCTTCAGCCCG 61.328 63.158 0.00 0.00 43.38 6.13
1389 1455 2.658422 CCATGGTTGCACTTGGGC 59.342 61.111 2.57 0.00 33.35 5.36
1528 1594 2.506438 GGAGTGGACACGCGCTAC 60.506 66.667 5.73 0.00 36.20 3.58
1529 1595 4.111016 CGGAGTGGACACGCGCTA 62.111 66.667 5.73 0.00 36.20 4.26
1569 1635 2.676342 GTCATACGTGGTGATCAAACCC 59.324 50.000 0.00 0.00 39.70 4.11
1590 1656 4.639310 AGCAACTCATGATGGCTCTAAAAG 59.361 41.667 9.38 0.00 0.00 2.27
1595 1661 2.641305 GAAGCAACTCATGATGGCTCT 58.359 47.619 14.04 6.93 32.84 4.09
1596 1662 1.674962 GGAAGCAACTCATGATGGCTC 59.325 52.381 14.04 9.07 32.84 4.70
1597 1663 1.005097 TGGAAGCAACTCATGATGGCT 59.995 47.619 9.38 9.38 36.13 4.75
1598 1664 1.404391 CTGGAAGCAACTCATGATGGC 59.596 52.381 0.00 0.14 0.00 4.40
1599 1665 2.719739 ACTGGAAGCAACTCATGATGG 58.280 47.619 0.00 0.00 37.60 3.51
1600 1666 3.504906 ACAACTGGAAGCAACTCATGATG 59.495 43.478 0.00 0.00 37.60 3.07
1601 1667 3.759581 ACAACTGGAAGCAACTCATGAT 58.240 40.909 0.00 0.00 37.60 2.45
1602 1668 3.213206 ACAACTGGAAGCAACTCATGA 57.787 42.857 0.00 0.00 37.60 3.07
1603 1669 3.635331 CAACAACTGGAAGCAACTCATG 58.365 45.455 0.00 0.00 37.60 3.07
1604 1670 2.035066 GCAACAACTGGAAGCAACTCAT 59.965 45.455 0.00 0.00 37.60 2.90
1605 1671 1.405105 GCAACAACTGGAAGCAACTCA 59.595 47.619 0.00 0.00 37.60 3.41
1606 1672 1.405105 TGCAACAACTGGAAGCAACTC 59.595 47.619 0.00 0.00 37.60 3.01
1642 1708 2.582052 CTTCTGCTGTTTTACACCCCA 58.418 47.619 0.00 0.00 0.00 4.96
1656 1722 1.261619 CGAGTGAACACAACCTTCTGC 59.738 52.381 7.68 0.00 0.00 4.26
1700 1766 6.031751 AGCAACAGGACTAGAAGAAACTAG 57.968 41.667 0.00 0.00 43.62 2.57
1701 1767 5.047235 GGAGCAACAGGACTAGAAGAAACTA 60.047 44.000 0.00 0.00 0.00 2.24
1705 1771 2.231478 CGGAGCAACAGGACTAGAAGAA 59.769 50.000 0.00 0.00 0.00 2.52
1706 1772 1.819288 CGGAGCAACAGGACTAGAAGA 59.181 52.381 0.00 0.00 0.00 2.87
1707 1773 1.134965 CCGGAGCAACAGGACTAGAAG 60.135 57.143 0.00 0.00 35.91 2.85
1710 1776 1.134560 GTACCGGAGCAACAGGACTAG 59.865 57.143 9.46 0.00 37.30 2.57
1726 1796 3.705072 AGCTAGGGACTACACAATGTACC 59.295 47.826 0.00 0.00 41.75 3.34
1753 1828 4.505313 GGAAATGTTCAGTTCCTTCCAC 57.495 45.455 20.16 0.00 40.24 4.02
1760 1835 3.139077 ACACGGAGGAAATGTTCAGTTC 58.861 45.455 4.70 4.70 0.00 3.01
1763 1838 3.563808 TGAAACACGGAGGAAATGTTCAG 59.436 43.478 0.00 0.00 35.54 3.02
1766 1841 2.293399 GCTGAAACACGGAGGAAATGTT 59.707 45.455 0.00 0.00 38.18 2.71
1868 1947 5.428131 AGACCTGCAATCTTATTCTCCTCTT 59.572 40.000 0.00 0.00 0.00 2.85
1870 1949 5.289083 AGACCTGCAATCTTATTCTCCTC 57.711 43.478 0.00 0.00 0.00 3.71
1871 1950 6.814954 TTAGACCTGCAATCTTATTCTCCT 57.185 37.500 5.52 0.00 0.00 3.69
1873 1952 8.845413 ATGATTAGACCTGCAATCTTATTCTC 57.155 34.615 5.52 0.00 33.26 2.87
1876 1955 9.458727 CCATATGATTAGACCTGCAATCTTATT 57.541 33.333 3.65 0.00 33.01 1.40
1877 1956 7.555554 GCCATATGATTAGACCTGCAATCTTAT 59.444 37.037 3.65 2.63 34.41 1.73
1878 1957 6.881065 GCCATATGATTAGACCTGCAATCTTA 59.119 38.462 3.65 0.00 33.26 2.10
2014 2094 1.209019 CAGGACCCTGATCTCTTGGTG 59.791 57.143 10.47 0.00 46.30 4.17
2082 2175 0.035820 TGGACCCAGCCGTCAATTAC 60.036 55.000 0.00 0.00 34.24 1.89
2112 2205 0.651031 CGAGCAGCAGATGACACATG 59.349 55.000 0.00 0.00 0.00 3.21
2142 3260 1.773856 TTGGCCCATCACCTCGTGAA 61.774 55.000 0.00 0.00 45.96 3.18
2282 3400 5.448904 GCAGAAAGATCTCAGCTTTTCCATC 60.449 44.000 0.00 0.00 35.83 3.51
2288 3406 2.748532 GCTGCAGAAAGATCTCAGCTTT 59.251 45.455 20.43 1.63 44.53 3.51
2330 3448 2.557924 TCATTGTGACATTGAAGTGCCC 59.442 45.455 7.62 0.00 0.00 5.36
2374 3492 9.388506 AGGAAACAATCACTACATTCTTCATAG 57.611 33.333 0.00 0.00 0.00 2.23
2402 3520 3.674997 TCCTCGGAAAAGAAGAATGGTG 58.325 45.455 0.00 0.00 0.00 4.17
2418 3536 7.313646 TCAGAAGAATAGTACAACTTTCCTCG 58.686 38.462 0.00 0.00 0.00 4.63
2442 3560 1.566298 ATCCTGTGAGTGGGGCCTTC 61.566 60.000 0.84 0.00 0.00 3.46
2452 3570 2.534298 CAGCACTACGAATCCTGTGAG 58.466 52.381 0.00 0.00 32.72 3.51
2463 3581 1.344942 GAACTCCACGCAGCACTACG 61.345 60.000 0.00 0.00 0.00 3.51
2472 3590 4.332543 TCATCAATAACATGAACTCCACGC 59.667 41.667 0.00 0.00 32.06 5.34
2473 3591 5.351189 TGTCATCAATAACATGAACTCCACG 59.649 40.000 0.00 0.00 31.98 4.94
2517 3635 7.436080 GCCATTATCACACACCAATAATTCAAG 59.564 37.037 0.00 0.00 0.00 3.02
2534 3652 7.497579 TGCGAAGAAAACTATTAGCCATTATCA 59.502 33.333 0.00 0.00 0.00 2.15
2535 3653 7.861630 TGCGAAGAAAACTATTAGCCATTATC 58.138 34.615 0.00 0.00 0.00 1.75
2543 3661 7.634817 CACGGTTAATGCGAAGAAAACTATTAG 59.365 37.037 0.00 0.00 0.00 1.73
2552 3670 0.800012 GGCACGGTTAATGCGAAGAA 59.200 50.000 0.00 0.00 44.37 2.52
2553 3671 0.036765 AGGCACGGTTAATGCGAAGA 60.037 50.000 0.00 0.00 44.37 2.87
2554 3672 0.373716 GAGGCACGGTTAATGCGAAG 59.626 55.000 0.00 0.00 44.37 3.79
2555 3673 0.036765 AGAGGCACGGTTAATGCGAA 60.037 50.000 0.00 0.00 44.37 4.70
2556 3674 0.818938 TAGAGGCACGGTTAATGCGA 59.181 50.000 0.00 0.00 44.37 5.10
2557 3675 0.928229 GTAGAGGCACGGTTAATGCG 59.072 55.000 0.00 0.00 44.37 4.73
2558 3676 1.933853 CTGTAGAGGCACGGTTAATGC 59.066 52.381 0.00 0.00 42.62 3.56
2559 3677 2.550978 CCTGTAGAGGCACGGTTAATG 58.449 52.381 0.00 0.00 30.52 1.90
2560 3678 2.981859 CCTGTAGAGGCACGGTTAAT 57.018 50.000 0.00 0.00 30.52 1.40
2576 3694 3.356529 ACCATAAGGACAGAAAGCCTG 57.643 47.619 0.00 0.00 42.82 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.