>input_sequence_74634
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----------ATGTACTCAAGAAGGACGCTGCTTCACACTCCTTCGTTCTCTGGGGGGCAGCCCTCCGGACCAAGCCAGC
CGGTGACCGAC---------------GGCGGCGCCCCGGGGAGCAACTTCGACGCGAACGTGGTGATGATCCTCGCCGTC
CTCCTCTGCGCGCTCATCTGCGCGCTGGGGCTCAACTCGATCGTGCGGTGCGCGCTGCGGTGTTCCAGCCGGGCGGCGGC
GGCGGACGCGGAGCCCAGCCGGGTCGCGCGGCTGGCCAAGGGCGGGCTGAGGAGGAAGGCCGTGCGCGCCATGCCGATCA
TGGTCTACTCGGCCGGGCTGAAGCTCAACACCGCCTGCCCGATGTGCACCATCTGCCTCTCGGACTTCGAGGCCGGGGAG
CACGTCAAGGTCCTGCCCAAGTGCAACCATGGCTTCCACGTCAGATGCATTGACCGGTGGCTCCTCGCGCGCTCCACCTG
CCCGACGTGCCGCCAGTCCTTGTTCGCCGAGCCGCACAAGGCGTGTGGGTGCTCCGAGGCCAGCCAGCCCGACGTAGCGC
GTGTCCACTCCGTGCTCGTGCCGCTCAGGCCTGAGGGTTTGATCACCACGTATGACTTTTAG------------------
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>chr2A_1_TraesCS2A01G299000
CCCGCAGCCCACCGACAGCGGACGGGGCGTTAACGGACGTCAGCGCGCGGCGGCCGTCCATTGGCCAGCGTGGCTACTGA
TTCGCGGGCCCAACCGGTCAGATTCGGGGTTAGCGCAGCCGAAGCGAGCGATTTCGCGAGTTGGTAGTTTTTTGTCGCGG
TTTAGTCCAAATTTGGTAGTTTTTGGCACAAAATCGTAGAGTGGTAGTTTTTCGTCACGTTTCCGTCAATTGTGGTAGTT
TTTGGCTAAATACTCTGTTTCCGTAAACTTGCAGGAATGGCATGGCAGTAAAAAATTGTTGTTCTCTCTCGGTGGCATAG
TTAATGAACTTAGGCAATAAGCCAGAGGGATTTCTCAAGTCACTGGGAACTTGATTACTCAGTAGCTCTGCAGGAAGTGA
GTGAGTAGGTCCCTAGCGTGTATTTTGCATCTACTCTACCGTGTCTCATGAACCCACTGGTAAAGGTGAAATACATAGAC
C-----TCACTACGATCAGACTGAGAATGTTCAAAACCACCCAGGAAAGATGAGCT---------------------TAG
AGCAAATGCTTCGGCACTGTATTTTCAAGTCGAACCAGACGAGGTCTCATTCCATTATATACAGTTCCGATCTCCTTGCC
TGCATATGCACTTTTATTATCAGGCAGACAAGACATGGTGCGCCGTATGGCCCTCTGATTCC-CAGAAAACGCACCGAGA
TCAGATGCAGCCCACTTGCCACAACCAAATGAATTTCCAAC--------TCTGCACCTTGAGCCATTCCCTGAAAGCATT
TGTCTCTAGTATTGGCTGGCAAGGACAAAAAGGTCAGTCTGCCCTACCAAATAAAACAATTCACGCCATTTTGTTGCAGC
CTTAAACCTTATGATGAGCCTATAAATACTTCAGCATAACCCCGGCTTATGATTCTACCTGGGCCAAATCACAC-AGCAG
CAATACAGAAAGACCTA--------------CGACCCACGTTCTTTGCGGTTACTTGCAGGATTCTGAAGAAAGATTACC
AAGAGTGAACATGTACTCAAGAAGGACGCTGCTTCACACTCCTTCGTTCTCTGGGGGGCAGCCCTCCGGACCAAGCCAGC
CGGTGACCGAC---------------GGCGGCGCCCCGGGGAGCAACTTCGACGCGAACGTGGTGATGATCCTCGCCGTC
CTCCTCTGCGCGCTCATCTGCGCGCTGGGGCTCAACTCGATCGTGCGGTGCGCGCTGCGGTGTTCCAGCCGGGCGGCGGC
GGCGGACGCGGAGCCCAGCCGGGTCGCGCGGCTGGCCAAGGGCGGGCTGAGGAGGAAGGCCGTGCGCGCCATGCCGATCA
TGGTCTACTCGGCCGGGCTGAAGCTCAACACCGCCTGCCCGATGTGCACCATCTGCCTCTCGGACTTCGAGGCCGGGGAG
CACGTCAAGGTCCTGCCCAAGTGCAACCATGGCTTCCACGTCAGATGCATTGACCGGTGGCTCCTCGCGCGCTCCACCTG
CCCGACGTGCCGCCAGTCCTTGTTCGCCGAGCCGCACAAGGCGTGTGGGTGCTCCGAGGCCAGCCAGCCCGACGTAGCGC
GTGTCCACTCCGTGCTCGTGCCGCTCAGGCCTGAGGGTTTGATCACCACGTATGACTTTTAGAGCCATCATGAGTTGCTT
CCAGTTGTTGCATGAAAGATGACGGAGTGGGGTGTAAAACAGCAGAAGGTTGTGTTCACTCGTTGTTGCTGCCAAAAACT
GGCTTCTAGTTTCTTC----TAGTCCTGTTGCTCCGGTACATTGTGTAGTCCCTAGCTAG-----TAGTGGAAGGAACTG
AACATTTCCTCCGTGTTTCAGCAGCTCATGTGTTGATGTCAATTATTGCGATGAGTTTCTGCGAATCACATTTGAATGCC
ACTTTGTTGAAAAGGAAAAAA----AAAGAGGAGAATAAGATTGCAGGTCTAATCATATGGCAGTGCCGCACCACCGGTC
CAGCATTATGACTGTGATTGGATTTGGAGGTCAACCTCTCGAGCGGTTGCTAAGGTTCAAGC-TTCAGTGGAGGCAGCAT
ATTCTCGAGCCATCACCAAGA---GATCAGGGTCCTGTAGT---------CTACTACTTCGTGGCTAAGCCTTAGTGATC
AGT-TTATGCCCACGTAATTGACGGCTGGGTCCACACCCGGCTAC-----------------------------------
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-----------------------------ATGTGT-CATCTGCTGCTCGTCTACATGGGTTCACGAGGTGATGGGCCAAT
GTCATGTGTCGCATTGCTACTGCTTAACTATTCTTTCTTCTACTCTAACTTACTAGCTGTGGTTTAGAGGAACATTGGGT
TGTGCTCACTGAAAACGAAAACCGCCTGGATGCCCACTCGATGGAAAAGCTGAGATCTTTCTGCAGCTTGTGCGGCTCCG
TTGGACCGGGCACTTCAATGTCACAATGATTATGAGAATGTTGCAACAGTGCTATGAAGAATGTAGTGATTGTTTCCTGC
ACCATTCTTCTTTTCCGAGGAAAGTTGTACTATTCTTCTGAAGGCCCCACTCACAGGATTCGTAGTGCTGCGTGGAGTTC
ATGTTATTGATGACAATAATGGGTAAAGGGTCTCCTTGAATTATTGGTGTGTGATAATGGCTAATAGTTTTCTTCGCATT
AACCGTGCCTCTACAGGCTTTCTGTCCTTATGGT
>chr2B_256
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---------------TGTTTCCGTAAACTTGCAGGAATGGCATGTCAGTAAAAACTTGTTGTTCTCTCTCAGTGGC----
-------------------------------TTCGCAAGTCACTG----------------------------------A
GTGAGTAGCCCCTGATCAATGTTTGACTCAATCAGG-------CCTCATGAACCCACTCGTAAAGGTGAAATAAATATAT
AGAACTTCATTACAATCAGGCTGAGAATGTTCAAAACCACCCAGGATGACCTTA------------------------AG
AGCAAATGCCTCGGTACTGTATTTTCAAGTCGAACCAGACAAGGTCTCATTCCATTTTATACTGTTCCGATCTCCTTGCC
TGCATATGTACTTTTATTATCAGGCAGACAAGACATGGTGCTCCGTATGGCCCTCTGATTCC-CAGAAAACGCACCGAGA
TCAGATGCAGCCCACTTGCCACAACCAAATGAATTTCCAAC--------TCG----------------CCAGGAAGCATT
TGTCTC---GATTGGCCTGTAAGGACAAAAAGGTCAGCCTGCCCTACCAAATAAAATAATTCAGGCCATTTTGTTGCAGC
CTTAAACCTTA--ATGAGCCTATAAATACCTGAGCATAACCGCGGCTTATGATTCTACCCGGGGCAAATCACAC-AGCAG
CAATACAGAAAGACCAACTACGAAGCTAGATCGATTCACGTTCTTTGCGGTTACATGCAGGATTCTGAAGAAAGATTACC
AAGAGTGAACATGTACTCAAGAAGGACACTGCTTCACACTCCTTCATTCTC---------------CGGTCCAAGCCAGC
CGGTGCCCGGAGCCACGGTGACCGATGGCGGCGCTCCGGGGAGCAACTTCGACGCGAACGTGGTCATGATCCTCGCCGTT
CTCCTCTGCGCGCTCATCTGCGCGCTGGGGCTCAACTCGGTCGTCCGGTGCGCGCTGCGGTGCTCGAGCCG---GGCGGC
GGCGGACGCGGAGCCCAGCCGGGTCGCGCGGCTGGCCAAGGGCGGGCTGAGGAGGAAGGCCGTGCGAGCCATGCCGATCA
TGGTCTACTCCGCGGGGCTCAAGCTCAACACCGCCTGCCCGATGTGCACCATCTGCCTCTCGGATTTCGAGGCCGGGGAG
CACGTGAAGGTCCTCCCCAAGTGCAACCATGGCTTCCACGTCAGATGCATTGACCGGTGGCTCCTGGCGCGCTCCACCTG
CCCGACGTGCCGCCAGTCCTTGTTCGCGGAGCCGCACAAGGCGTGTGGGTGCTCCGAGGCCAGCCAGCCCGACCCGGCGC
GTGTCCACTCTGTGCTCGTGCCGCTCAGGCCTGAAGGTTTGATCACCACGTATGATTTTT------------AGTTGCTT
CCACTTGTTGCATGAAAGATGACGGAGCGGGGTGTAAAACAACAGAAGGTTGTGTTCACTCGTTGTTACTGCCAAAAACT
GGCTTGAAGTAATTTTCTTGTAGTCGTGTTGCTCCCGTGCATTGTGTAGTCCCTAGCTAGTAGTATACTGGAAGAAATTG
TACATTTCCTCCGTGTTTCAGCAGCTCATGTGTTGATGTCAATTATTGCGACGAGTTTCTGCGAATCACATTTGAATGCC
ACTTTGTTGAAAAGAAAAAAA----AGAAGGAC----AAGATCGCAGGTCTAATCATGTGGCAGTGCCGCACCACCAGTC
CAGCATTATGACTGTGATTGGATTTGGAGGTCAACCTTTCGAGCGGTTGCTAAGGTTCAAGC-TTCAGTGGAGGCAGCAT
ATTCTCGAGCCATTACCAAGAAGAGATCAGGGCCTTGTAGTCTG------CTACTACTTCGTAGCTAAGCCTTAGTGATC
AGTGCTATGGCCCCATGATTGACGTCTGGGTCCACACCCGGCTA------------------------------------
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-------TAGGCATGGCCACTTCGGCTATATGTGTCCATCTGCTGCTCGTCTACATGGGATCACGAGGTGATTGGCCAAT
GTCATGTGTCGCGTTGCTACTGCTTAACTAATCTTTCTTCTACTCTAACTTACTAGCTGTGGTTTAGAGGAACATTGGGT
TGTGCTCACTGAAAACGAAAACCGCCTGGATGCCCACTCAATGGA-AAGCTGAGATCTTTCTACAGCTTATGCGGTTCCG
TTGGACCAGACACTTCAATGTCACAATGATTATGAGAATGTTGTAACAGTGTTGGGAAGAATGCAGTCATTGTTTCCTGT
ACAATTCT-CTTTTCTGAGGAAAGTTGTACTATTCTTCTAAAGGCCCCATTCACAGGATTTGTACTACCAAGTGGACTTC
ATGTTATTGATTACAATA------------------------------------TAATGGGTAA----------------
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>chr2D_256
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---------------TGTTTCCGTAAACTTGCAGGAATGGCATGTCAGTAAAAATTTGTTGT--TCTCTCTGTGGCATAG
TTAATAAAATTATGCAGTTAATCCAGAG----------------------------------------------------
----------------------------------GG-------TCTCATGAACTCACTCGTAAAGGTCAAATATATAGAT
C-----TCGTTACGATC------AGAATGTTCAAAACCACCCAGGATGACCTTAGAGCTGGTTTGAAAGGATGCAACTAG
AGCAAATACCTCGGTATTGTATTTTGAAATCGAACAAGACAAGGTCTCATTCCATTTTATACAGTTCCGATCTCCTTGCT
TCCATATGCAGA---ATTATTAGGCAGACAAGACATGGTGCTCCGTATGGCCCCTCTGATTCTCAGAAAACGCACCGAGA
TCAGATGCAGCCCACTTGCCACAAGC-AAAGAATTTCCAATTGTGCCATTCG----------------CCAGGTTGCATT
TGTTTC---TATTGGCTGGTAAGGACAAAAAGGTCAGCCTGCCCTACCAAATAAAATAATTCACGCCATATTGTTGAAGC
CTTAAACCTTATCACGAGCCTATAAATACCTGAGCATAACCCCGGCTTATGATTCTACCTGGGCCAAATCAACATAGCAG
CAATACAGAAAGACCTAGTACGAAGCTAGATCGATCCACGTTCGTTGCAGTTACTTGCAGGATTCTGAAGAAAGATTACC
AAGAGTGAACATGTACTCAAGAAGGACACTGCTTCACACTCCTTCATTCTCTGGGGGGCAGCCCTCCGGACCAAGCCAGC
CGGTGACCGAC---------------GGCGGCGCTCCGGGAAGCAACTTCGACGCGAACGTGGTGATGATCCTCGCCGTC
CTCCTCTGCGCGCTCATATGCGCGCTGGGGCTCAACTCGATCGTCCGGTGCGCGCTCCGGTGCTCGAGCCGGGCGGCGGC
GGCGGACGCGGAGCCCAGCCGGGTGGCGCGGCTGGCCAAGGGCGGGCTGAGGAGGAAGGCCGTCCGGGCCATGCCGATCA
TGGTCTACTCCGCGGGGCTGAAGCTCAACACCGCCTGCCCGATGTGCACCATCTGCCTCTCGGACTTCGAGGCCGGGGAG
CACGTCAAGGTCCTCCCCAAGTGCAACCATGGCTTCCACGTCAGATGCATTGACCGGTGGCTCCTCGCGCGCTCCACCTG
CCCGACGTGCCGCCAGTCCTTGTTCGCCGAGCCGCACAAGGCGTGTGGGTGCTCCGAGGCCAGCCAGGTCGACCCGGCGC
GTGTCCACTCTGTGCTTGTGCCGCTCAGGCCTGAAGGTTTGATCACCACGTATGATTTTT------------AGTTGCTT
CAAGTTGTTGCATGAAAGATGACGGAGCGGGGTGTAAAGCAACAGAAGGTTGTGTTCACTCGGTGTTGTTGCCAAAAACT
GGCTTG--------------TAGCCCTCTTACTCCTGCACAATGTGTAGTCCCTAGCTAGTAG-----TGGAAGAAATTG
TACATTTCCTCCGTGTTTCAGCAGCTCATGTGTTGATGTCAATTATTGCGATGAGTTTCTGCGAATCACATTCGAATGCC
ACTTTGTTGAAAAGGAAAAAAGAAGAGAAGGAG----AAGATTGCAGGTCTAATCATATGGCAGTGCCGCACCACCGGTC
CAGCATTATGACTGTGATTGGATTTGGAGGTCAACCTTTCGAGCGGTTGCTAAGGTTCAAGTTTTCAGTGGAGGCAGCAT
ATTCTCGAGCCATTACCAAGA---GATCAGGGCCTTGTAGTCTACTACTACTACTACTTCGTAGCTAAGCCTTAGTGATC
AGTGTTATGGCCCCATAATTGACGGCTGGGTCCACACCCGGCTATAGGCATGGTCATGTGTCATCTGCTGCTCATCTACA
TGGGATCACGAAGTGATGGGCCAATGTCATGTGTCGCATTGCTATTGCTTAACTATTCTTTCTTCTATTCCTCTAACTAA
GGCTGGCGAATTTCAGTCAGAACTGTGGTTTACAGAACATTGGGTTCTGCTCACTGAAAACGAAAATCGCCTGGATGCCC
ACTCGATGGAAAAGCTGAGATCTTTCTGCAGCTTGTGCGGCTCCGTTGGACCGGGCACTTCAATGCCACAATGATTATGA
GAATGTTGTCACAGTGTTACGAAGAATGTAGTGATTGTTTCCTGTACCATTCTTCTTTTCTGAGGAAAGTTGTACTATTC
TTCTAAAGGCCCCATTCACAGGATTTGTACTACCAAGTGGAGTTCATGTTATTCCTTTCATTCCATAATGTAGTGCGTTC
ACGCTTTTTGAGATTTAATTTTGATAATAAATTTAACCAACAAGAATGGCTGCGATGGAAGCATGACAGATACCTTTGAA
TTCGTATTCGAAAGAAGTTTTTAAAGGTATAATTTTTCAGTAAAATAATTTATGTATTATTGATTTTATTTATGGTCAAA
GTTGAATCTCGAAAAGCATGAACACACTACAACATGGAATGGAGGGAGTATTAATTGCAATAATGGGTAAAGGGTCTCGT
TGAATTATTGGTGTGCAATAATGGGTAATAGTTCCTGCTAGTAGTTCTTCGCATTAACCGTGTCTCTGCAGGTTTTCTAT
CCTTCTGGTTAAAAGCTTTATTATTTTTTCCCTTGGTTATATCAATACAAAGGAAACTTCATTCCAATTTTAACAAAAGA
AGCATTTCTTATGACAAAAACGGTGTTTTTTTATTGGGCGAAACTTTTTTTTTCAACATGCATCAAAATGTCCTTTAGGG
AGTATTGATTTTTTTTCCTTCGTAGCTAAGCCTTAGTGATCAGTGTTATGCCCCCATAATTGGCGACTGGGTCCACACCC
GCGGCTATAGGCATGGCCACTTCGGCTATATGTGT-CATCTGCTGCTCGTCTACATGGGATCACGAGGTGATGGGCCAAT
GTCATGTGTCGCATTGCTACTGCTTAACTA-TCTTTCTTCTGCTCTAACTTACTAGCTGTGGTTTAGAGGAACATTGGGT
TGTGTTCACTGAAAACGAAAACCGCCTGGATGCCCACTCAATGGA-AAGCTGAGATCTTTCTACAGCTTATGCGGTTCCG
TTAGACCAGGCACTTAAATGTCACTATGATTATGAGAATGTTGCAACAGTGTTATGAAGAATGTAGTGATTGTTTCCTG-
-CCATTCTTCTTTTCGGAGGGAAGTTGTACTATTCTTCTAAAGGCCCCATTCACAGGATTTGTAGTGCTAAG----GTTC
ATGTTATTGATGACAATAATGGGTAAAGGGTCTCGTTGAATTATTGGTGTGCAATAATGGGTAATAGTT-----------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSS-----------------------------S---------S---------------S---------
-----S--S---S---S-S-SS-SSSS-SSS---S----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-
--------SS--SS-S-SSSSS--SSSSSSS-SSSSSSSSSSS---------------S--------------S-----S
---------S---------S--------------------------SSSSSSSSSS------------------------
---------S----S-------------------------S---------------S-----------------------
-----------------------------------------S--------------------------------------
---------------------------------------------------SSSSSSSSSSSSSSSSS--S-S-------
------SSS----------S-----------------S------------------S-----------------------
------------S----------------S-S------------------------------------------------
----------------------------------S---------------------------------------------
---------------------------S-----------------S----------------------------------
----------------------------------S---------------------------------------------
--------------------------------------------S-----------------S--S--------------
------------------------------------------------------------------S-------------
----------S--S------------------------------------------------------------------
--------------S-----------------------------------------------------------------
-------------------------------------------------------------------------SSS----
----------S-----------------------S--------------------S----SSSSSSSSSSSS--------
---------------------------S-------------S--------------------------------------
-----SS---SSS--S-------------------S-------------------------------S------S--S--
S-------------------------------------------------------------------------------
--------------------------S-SS-SSSSSS-------------------------------------------
-------------------------------------S------------------------------------------
-------------S------------------S-S---------------------------S-----------------
---------S--S-S-----------------------------S-----------------------------------
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-----------------------------------------------------------S--------------------
------------------------------S-------------------------------------------------
---------------------------------------S-----S----------------S------S-----S----
-------S-------------------------------------------S---------------------------S
---------------S-----------------------S---------S----------S--------SS---------
----------------------------------S----------------SS-------S--------SSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_113
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-------------CCGGTCAGATTCGGGGTTAG-----------------------------------------------
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>reverse_2175
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--------------GTAATTGACGGCTGGGTCCA----------------------------------------------
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