Multiple sequence alignment - TraesCS2A01G283700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G283700 chr2A 100.000 2219 0 0 1 2219 475811223 475813441 0.000000e+00 4098.0
1 TraesCS2A01G283700 chr2A 95.122 41 2 0 1882 1922 37218833 37218873 5.110000e-07 65.8
2 TraesCS2A01G283700 chr2A 95.000 40 1 1 1882 1920 58543930 58543891 6.620000e-06 62.1
3 TraesCS2A01G283700 chr2B 90.880 1546 87 14 694 2219 423344897 423346408 0.000000e+00 2025.0
4 TraesCS2A01G283700 chr2B 94.891 274 10 1 251 524 423342634 423342903 2.040000e-115 425.0
5 TraesCS2A01G283700 chr2B 85.161 155 17 3 79 229 423342404 423342556 1.060000e-33 154.0
6 TraesCS2A01G283700 chr2B 83.516 91 13 2 523 613 597552975 597553063 1.410000e-12 84.2
7 TraesCS2A01G283700 chr2B 82.278 79 11 3 1766 1844 13155748 13155823 5.110000e-07 65.8
8 TraesCS2A01G283700 chr2B 100.000 29 0 0 1889 1917 569978555 569978527 1.000000e-03 54.7
9 TraesCS2A01G283700 chr2D 95.144 1009 43 3 665 1671 355629905 355630909 0.000000e+00 1587.0
10 TraesCS2A01G283700 chr2D 93.303 433 18 4 92 524 355629427 355629848 1.450000e-176 628.0
11 TraesCS2A01G283700 chr2D 93.528 309 19 1 1672 1979 355631042 355631350 2.010000e-125 459.0
12 TraesCS2A01G283700 chr2D 94.737 95 2 3 1 93 355629143 355629236 6.390000e-31 145.0
13 TraesCS2A01G283700 chr2D 85.227 88 13 0 1723 1810 15133435 15133348 8.440000e-15 91.6
14 TraesCS2A01G283700 chrUn 82.558 86 15 0 1727 1812 31615689 31615774 2.360000e-10 76.8
15 TraesCS2A01G283700 chrUn 95.556 45 2 0 1775 1819 153253454 153253410 3.060000e-09 73.1
16 TraesCS2A01G283700 chr3B 80.198 101 16 3 1736 1833 31063803 31063704 3.060000e-09 73.1
17 TraesCS2A01G283700 chr1B 95.556 45 2 0 1766 1810 510811163 510811119 3.060000e-09 73.1
18 TraesCS2A01G283700 chr3D 80.435 92 16 2 518 608 160894118 160894208 3.950000e-08 69.4
19 TraesCS2A01G283700 chr3D 91.489 47 1 3 1875 1920 134029232 134029276 6.620000e-06 62.1
20 TraesCS2A01G283700 chr3A 79.592 98 16 4 1736 1833 26869322 26869229 1.420000e-07 67.6
21 TraesCS2A01G283700 chr6B 92.500 40 3 0 1816 1855 693822691 693822652 8.560000e-05 58.4
22 TraesCS2A01G283700 chr7B 100.000 29 0 0 1879 1907 201496290 201496318 1.000000e-03 54.7
23 TraesCS2A01G283700 chr1D 94.118 34 2 0 1879 1912 338537472 338537439 4.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G283700 chr2A 475811223 475813441 2218 False 4098.00 4098 100.000000 1 2219 1 chr2A.!!$F2 2218
1 TraesCS2A01G283700 chr2B 423342404 423346408 4004 False 868.00 2025 90.310667 79 2219 3 chr2B.!!$F3 2140
2 TraesCS2A01G283700 chr2D 355629143 355631350 2207 False 704.75 1587 94.178000 1 1979 4 chr2D.!!$F1 1978

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
676 2826 1.061546 TAACTTCCACCACCCCACTC 58.938 55.0 0.0 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1852 4162 2.039818 TAGAGTGTGGCTAGGTCTCG 57.96 55.0 0.0 0.0 0.0 4.04 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 85 7.826260 AAAAAGACGAGCAAAGAATTGAAAA 57.174 28.000 0.00 0.00 38.94 2.29
129 324 1.098050 GTAACAATGGCTGGCTGGAG 58.902 55.000 2.00 0.00 0.00 3.86
187 385 5.528870 AGAACGAATTGAACAAAATGGGAC 58.471 37.500 0.00 0.00 0.00 4.46
233 431 7.581476 ACATAAATGTAGAAAAACAGTCGTGG 58.419 34.615 0.00 0.00 39.68 4.94
238 436 2.993937 AGAAAAACAGTCGTGGTCCAA 58.006 42.857 0.00 0.00 0.00 3.53
247 445 1.071305 GTCGTGGTCCAAAAACGTACG 60.071 52.381 15.01 15.01 38.43 3.67
291 545 2.346803 GCAAATCAACGGCTCTAGACA 58.653 47.619 0.00 0.00 0.00 3.41
301 555 2.311463 GGCTCTAGACAGATGTGCCTA 58.689 52.381 9.14 0.00 36.93 3.93
319 573 3.445096 GCCTATGTGAATTTCTGGCTTGT 59.555 43.478 0.00 0.00 36.32 3.16
320 574 4.640201 GCCTATGTGAATTTCTGGCTTGTA 59.360 41.667 0.00 0.00 36.32 2.41
321 575 5.449177 GCCTATGTGAATTTCTGGCTTGTAC 60.449 44.000 0.00 0.00 36.32 2.90
322 576 5.882557 CCTATGTGAATTTCTGGCTTGTACT 59.117 40.000 0.00 0.00 0.00 2.73
394 648 4.399303 CCCCTCAGTTGGTTAATTAGCAAG 59.601 45.833 1.55 0.00 44.32 4.01
436 690 2.708216 TAAGCTTCGGCCATTCATCA 57.292 45.000 0.00 0.00 43.01 3.07
450 704 3.756082 TTCATCAGGGCCATAACCTTT 57.244 42.857 6.18 0.00 35.78 3.11
524 778 7.201496 CCGGTTAATGTGTCTACATCAAAGTAC 60.201 40.741 0.00 0.00 46.54 2.73
525 779 7.544566 CGGTTAATGTGTCTACATCAAAGTACT 59.455 37.037 0.00 0.00 46.54 2.73
528 782 7.907214 AATGTGTCTACATCAAAGTACTTCC 57.093 36.000 8.95 0.00 46.54 3.46
529 783 6.665992 TGTGTCTACATCAAAGTACTTCCT 57.334 37.500 8.95 0.00 0.00 3.36
530 784 6.688578 TGTGTCTACATCAAAGTACTTCCTC 58.311 40.000 8.95 0.00 0.00 3.71
531 785 6.100668 GTGTCTACATCAAAGTACTTCCTCC 58.899 44.000 8.95 0.00 0.00 4.30
532 786 5.778241 TGTCTACATCAAAGTACTTCCTCCA 59.222 40.000 8.95 0.00 0.00 3.86
536 790 9.042450 TCTACATCAAAGTACTTCCTCCATAAA 57.958 33.333 8.95 0.00 0.00 1.40
539 793 7.942341 ACATCAAAGTACTTCCTCCATAAACAA 59.058 33.333 8.95 0.00 0.00 2.83
540 794 8.792633 CATCAAAGTACTTCCTCCATAAACAAA 58.207 33.333 8.95 0.00 0.00 2.83
541 795 8.934023 TCAAAGTACTTCCTCCATAAACAAAT 57.066 30.769 8.95 0.00 0.00 2.32
572 843 8.430801 AGCATTCAGATCATTAAAGTAGTGAC 57.569 34.615 0.00 0.00 0.00 3.67
573 844 7.497249 AGCATTCAGATCATTAAAGTAGTGACC 59.503 37.037 0.00 0.00 0.00 4.02
574 845 7.497249 GCATTCAGATCATTAAAGTAGTGACCT 59.503 37.037 0.00 0.00 0.00 3.85
579 850 9.653287 CAGATCATTAAAGTAGTGACCTAAACA 57.347 33.333 0.00 0.00 0.00 2.83
580 851 9.654663 AGATCATTAAAGTAGTGACCTAAACAC 57.345 33.333 0.00 0.00 38.38 3.32
582 853 9.654663 ATCATTAAAGTAGTGACCTAAACACTC 57.345 33.333 0.00 0.00 45.58 3.51
583 854 8.867097 TCATTAAAGTAGTGACCTAAACACTCT 58.133 33.333 0.00 0.00 45.58 3.24
584 855 9.490379 CATTAAAGTAGTGACCTAAACACTCTT 57.510 33.333 0.00 0.00 45.58 2.85
617 2767 6.911250 TTACAGAGGAAGTAGTCATCAACA 57.089 37.500 0.00 0.00 39.61 3.33
618 2768 7.482169 TTACAGAGGAAGTAGTCATCAACAT 57.518 36.000 0.00 0.00 39.61 2.71
619 2769 6.365970 ACAGAGGAAGTAGTCATCAACATT 57.634 37.500 0.00 0.00 39.61 2.71
620 2770 6.773638 ACAGAGGAAGTAGTCATCAACATTT 58.226 36.000 0.00 0.00 39.61 2.32
621 2771 7.907389 ACAGAGGAAGTAGTCATCAACATTTA 58.093 34.615 0.00 0.00 39.61 1.40
622 2772 8.375506 ACAGAGGAAGTAGTCATCAACATTTAA 58.624 33.333 0.00 0.00 39.61 1.52
623 2773 8.660373 CAGAGGAAGTAGTCATCAACATTTAAC 58.340 37.037 0.00 0.00 39.61 2.01
624 2774 8.375506 AGAGGAAGTAGTCATCAACATTTAACA 58.624 33.333 0.00 0.00 39.61 2.41
625 2775 8.324163 AGGAAGTAGTCATCAACATTTAACAC 57.676 34.615 0.00 0.00 0.00 3.32
626 2776 8.157476 AGGAAGTAGTCATCAACATTTAACACT 58.843 33.333 0.00 0.00 0.00 3.55
627 2777 8.784043 GGAAGTAGTCATCAACATTTAACACTT 58.216 33.333 0.00 0.00 0.00 3.16
630 2780 9.337396 AGTAGTCATCAACATTTAACACTTTCA 57.663 29.630 0.00 0.00 0.00 2.69
631 2781 9.382244 GTAGTCATCAACATTTAACACTTTCAC 57.618 33.333 0.00 0.00 0.00 3.18
632 2782 7.425606 AGTCATCAACATTTAACACTTTCACC 58.574 34.615 0.00 0.00 0.00 4.02
633 2783 6.640907 GTCATCAACATTTAACACTTTCACCC 59.359 38.462 0.00 0.00 0.00 4.61
634 2784 6.322456 TCATCAACATTTAACACTTTCACCCA 59.678 34.615 0.00 0.00 0.00 4.51
635 2785 6.531503 TCAACATTTAACACTTTCACCCAA 57.468 33.333 0.00 0.00 0.00 4.12
636 2786 6.936279 TCAACATTTAACACTTTCACCCAAA 58.064 32.000 0.00 0.00 0.00 3.28
637 2787 7.386851 TCAACATTTAACACTTTCACCCAAAA 58.613 30.769 0.00 0.00 0.00 2.44
638 2788 7.878127 TCAACATTTAACACTTTCACCCAAAAA 59.122 29.630 0.00 0.00 0.00 1.94
671 2821 3.506067 CACTTTGATAACTTCCACCACCC 59.494 47.826 0.00 0.00 0.00 4.61
673 2823 1.748732 TGATAACTTCCACCACCCCA 58.251 50.000 0.00 0.00 0.00 4.96
675 2825 1.633945 GATAACTTCCACCACCCCACT 59.366 52.381 0.00 0.00 0.00 4.00
676 2826 1.061546 TAACTTCCACCACCCCACTC 58.938 55.000 0.00 0.00 0.00 3.51
677 2827 2.052047 AACTTCCACCACCCCACTCG 62.052 60.000 0.00 0.00 0.00 4.18
678 2828 3.246112 TTCCACCACCCCACTCGG 61.246 66.667 0.00 0.00 0.00 4.63
826 3002 3.818961 TCTTCTTTCAGCATCAAAGCG 57.181 42.857 0.00 0.00 40.15 4.68
828 3004 1.896220 TCTTTCAGCATCAAAGCGGT 58.104 45.000 0.00 0.00 40.15 5.68
878 3054 1.534729 CCTCCCTTTTCCTTTCCACG 58.465 55.000 0.00 0.00 0.00 4.94
886 3062 3.570912 TTTCCTTTCCACGTTCCTTCT 57.429 42.857 0.00 0.00 0.00 2.85
913 3089 4.452114 TCATCCTTCTCATCAACACAAACG 59.548 41.667 0.00 0.00 0.00 3.60
1051 3227 1.092921 GGTGTTGTTCGTGGTGCTCA 61.093 55.000 0.00 0.00 0.00 4.26
1207 3383 1.518572 GTCCACATCTACACCGGCG 60.519 63.158 0.00 0.00 0.00 6.46
1208 3384 2.202878 CCACATCTACACCGGCGG 60.203 66.667 27.06 27.06 0.00 6.13
1248 3424 1.402968 CATTACATGCCTGTGTGCCTC 59.597 52.381 4.73 0.00 36.79 4.70
1281 3457 2.203084 TCTCGCCAACGTTGCCAA 60.203 55.556 22.93 8.47 41.18 4.52
1282 3458 2.175184 CTCTCGCCAACGTTGCCAAG 62.175 60.000 22.93 17.03 41.18 3.61
1310 3486 1.879380 GCATGCGCCCTGTTTCATATA 59.121 47.619 4.18 0.00 0.00 0.86
1324 3500 8.455682 CCTGTTTCATATACGTGTGGTTAATTT 58.544 33.333 0.00 0.00 0.00 1.82
1339 3515 5.046950 TGGTTAATTTATTGGTCAAGGTGGC 60.047 40.000 0.00 0.00 0.00 5.01
1420 3596 6.142139 TCTTAATTCAAACATGCGACACTTG 58.858 36.000 0.00 0.00 0.00 3.16
1561 3739 9.003112 CAAGCGATCAAAGTCTTAATTAACATG 57.997 33.333 0.00 0.00 0.00 3.21
1580 3758 2.867624 TGCAGCTTCTCATGACCTTTT 58.132 42.857 0.00 0.00 0.00 2.27
1609 3787 7.123098 TGGATTCATCAACATCAGCATAGTTTT 59.877 33.333 0.00 0.00 0.00 2.43
1813 4123 6.655425 AGATCTTACATTGAGATCCATGCATG 59.345 38.462 20.19 20.19 46.88 4.06
1852 4162 9.612620 CTTTCTTAAATGTTATGTCACTTGACC 57.387 33.333 6.91 0.00 44.15 4.02
1925 4235 5.106555 CGATGCAAAGGCCGAGATTTATTAT 60.107 40.000 0.00 0.00 40.13 1.28
2056 4366 3.777478 TCGGACGATCTTGGTAATCAAC 58.223 45.455 0.00 0.00 0.00 3.18
2134 4444 9.618890 CTTTATCTTCTCCCTTATTGACATTCA 57.381 33.333 0.00 0.00 0.00 2.57
2201 4511 7.840931 AGGAGTTATATTTGCTTCAAAAAGGG 58.159 34.615 0.00 0.00 36.90 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 6.886459 AGGAAAACAACATGACTGCTATGTAT 59.114 34.615 0.00 0.00 37.77 2.29
35 36 7.759489 TTTAGGAAAACAACATGACTGCTAT 57.241 32.000 0.00 0.00 0.00 2.97
83 85 7.939039 TGTTCACCTTCTTCATCTATGTTCTTT 59.061 33.333 0.00 0.00 0.00 2.52
87 89 6.773638 ACTGTTCACCTTCTTCATCTATGTT 58.226 36.000 0.00 0.00 0.00 2.71
129 324 3.121778 GCGGTTGTTCTTTTCAATCATGC 59.878 43.478 0.00 0.00 0.00 4.06
164 362 5.528870 GTCCCATTTTGTTCAATTCGTTCT 58.471 37.500 0.00 0.00 0.00 3.01
187 385 0.316772 CGTGTACGTAGGCTGGATCG 60.317 60.000 0.00 0.00 34.11 3.69
233 431 1.005137 TGTTCGCGTACGTTTTTGGAC 60.005 47.619 17.90 7.48 41.18 4.02
238 436 3.344852 GAAACTTGTTCGCGTACGTTTT 58.655 40.909 17.90 13.25 41.18 2.43
247 445 1.136057 GTGATCCGGAAACTTGTTCGC 60.136 52.381 9.01 1.88 0.00 4.70
291 545 4.885907 CCAGAAATTCACATAGGCACATCT 59.114 41.667 0.00 0.00 0.00 2.90
301 555 7.611467 TGATAAGTACAAGCCAGAAATTCACAT 59.389 33.333 0.00 0.00 0.00 3.21
342 596 6.889177 TGGAGTATGCTTAATTTGGATTGTGA 59.111 34.615 0.00 0.00 0.00 3.58
394 648 1.227176 GTCGTCCACGGCCTAATCC 60.227 63.158 0.00 0.00 38.15 3.01
450 704 1.685224 GTGGTCTGGAGAATGGCCA 59.315 57.895 8.56 8.56 0.00 5.36
545 799 9.453572 TCACTACTTTAATGATCTGAATGCTTT 57.546 29.630 0.00 0.00 0.00 3.51
546 800 8.887717 GTCACTACTTTAATGATCTGAATGCTT 58.112 33.333 0.00 0.00 0.00 3.91
547 801 7.497249 GGTCACTACTTTAATGATCTGAATGCT 59.503 37.037 0.00 0.00 0.00 3.79
548 802 7.497249 AGGTCACTACTTTAATGATCTGAATGC 59.503 37.037 0.00 0.00 32.51 3.56
549 803 8.954950 AGGTCACTACTTTAATGATCTGAATG 57.045 34.615 0.00 0.00 32.51 2.67
552 806 9.871238 GTTTAGGTCACTACTTTAATGATCTGA 57.129 33.333 0.02 0.00 34.67 3.27
556 827 9.654663 GAGTGTTTAGGTCACTACTTTAATGAT 57.345 33.333 0.00 0.00 44.68 2.45
591 862 8.208224 TGTTGATGACTACTTCCTCTGTAAAAA 58.792 33.333 0.00 0.00 0.00 1.94
592 863 7.732025 TGTTGATGACTACTTCCTCTGTAAAA 58.268 34.615 0.00 0.00 0.00 1.52
593 864 7.297936 TGTTGATGACTACTTCCTCTGTAAA 57.702 36.000 0.00 0.00 0.00 2.01
595 866 7.482169 AATGTTGATGACTACTTCCTCTGTA 57.518 36.000 0.00 0.00 0.00 2.74
596 867 6.365970 AATGTTGATGACTACTTCCTCTGT 57.634 37.500 0.00 0.00 0.00 3.41
597 868 8.660373 GTTAAATGTTGATGACTACTTCCTCTG 58.340 37.037 0.00 0.00 0.00 3.35
598 869 8.375506 TGTTAAATGTTGATGACTACTTCCTCT 58.624 33.333 0.00 0.00 0.00 3.69
599 870 8.443937 GTGTTAAATGTTGATGACTACTTCCTC 58.556 37.037 0.00 0.00 0.00 3.71
600 871 8.157476 AGTGTTAAATGTTGATGACTACTTCCT 58.843 33.333 0.00 0.00 0.00 3.36
601 872 8.324163 AGTGTTAAATGTTGATGACTACTTCC 57.676 34.615 0.00 0.00 0.00 3.46
605 2755 9.382244 GTGAAAGTGTTAAATGTTGATGACTAC 57.618 33.333 0.00 0.00 0.00 2.73
638 2788 9.292846 GGAAGTTATCAAAGTGTTAAACGTTTT 57.707 29.630 20.19 3.53 0.00 2.43
639 2789 8.460428 TGGAAGTTATCAAAGTGTTAAACGTTT 58.540 29.630 18.90 18.90 0.00 3.60
657 2807 1.061546 GAGTGGGGTGGTGGAAGTTA 58.938 55.000 0.00 0.00 0.00 2.24
678 2828 2.746277 ATGTGTCGGGAAAGCCGC 60.746 61.111 0.00 0.00 33.83 6.53
679 2829 0.744414 ATCATGTGTCGGGAAAGCCG 60.744 55.000 0.00 0.00 33.83 5.52
803 2979 4.977963 CGCTTTGATGCTGAAAGAAGAAAA 59.022 37.500 0.00 0.00 34.07 2.29
804 2980 4.539870 CGCTTTGATGCTGAAAGAAGAAA 58.460 39.130 0.00 0.00 34.07 2.52
822 2998 1.568612 CGAGACATGCACAACCGCTT 61.569 55.000 0.00 0.00 0.00 4.68
826 3002 0.238289 CCAACGAGACATGCACAACC 59.762 55.000 0.00 0.00 0.00 3.77
828 3004 1.514678 GGCCAACGAGACATGCACAA 61.515 55.000 0.00 0.00 0.00 3.33
878 3054 2.167487 AGAAGGATGAGCGAGAAGGAAC 59.833 50.000 0.00 0.00 0.00 3.62
886 3062 2.497273 TGTTGATGAGAAGGATGAGCGA 59.503 45.455 0.00 0.00 0.00 4.93
913 3089 1.022735 CTGCTGATGGTGGAAGATGC 58.977 55.000 0.00 0.00 0.00 3.91
1207 3383 0.908198 ATATGCAGCTAGCTAGGCCC 59.092 55.000 18.86 5.84 45.94 5.80
1208 3384 2.011046 GCATATGCAGCTAGCTAGGCC 61.011 57.143 22.84 6.58 45.94 5.19
1248 3424 2.544685 CGAGAGGTGCTTCATTAGGTG 58.455 52.381 0.00 0.00 0.00 4.00
1310 3486 6.294286 CCTTGACCAATAAATTAACCACACGT 60.294 38.462 0.00 0.00 0.00 4.49
1324 3500 0.774276 TGTGGCCACCTTGACCAATA 59.226 50.000 32.62 7.31 34.63 1.90
1339 3515 0.969894 GGATCGGAGGGAGTATGTGG 59.030 60.000 0.00 0.00 0.00 4.17
1412 3588 6.887368 TCACTTTGATTCATAACAAGTGTCG 58.113 36.000 20.39 4.60 32.62 4.35
1459 3635 8.740369 CGTTCTGTGTAACTTAATATAAGACGG 58.260 37.037 4.24 0.00 38.04 4.79
1561 3739 2.555757 ACAAAAGGTCATGAGAAGCTGC 59.444 45.455 0.00 0.00 0.00 5.25
1599 3777 7.054491 AGACCAAATGAAACAAAACTATGCT 57.946 32.000 0.00 0.00 0.00 3.79
1609 3787 7.432869 CCTATGACAAAAGACCAAATGAAACA 58.567 34.615 0.00 0.00 0.00 2.83
1770 4080 9.770503 GTAAGATCTTACGAATATAGCATCGAA 57.229 33.333 25.68 0.00 41.43 3.71
1772 4082 9.723447 ATGTAAGATCTTACGAATATAGCATCG 57.277 33.333 30.85 4.40 46.19 3.84
1785 4095 7.658982 TGCATGGATCTCAATGTAAGATCTTAC 59.341 37.037 30.61 30.61 45.56 2.34
1852 4162 2.039818 TAGAGTGTGGCTAGGTCTCG 57.960 55.000 0.00 0.00 0.00 4.04
1978 4288 9.685828 TGTATTTTGAGGTTAAACTTTACATGC 57.314 29.630 0.00 0.00 0.00 4.06
2036 4346 2.864343 GGTTGATTACCAAGATCGTCCG 59.136 50.000 0.00 0.00 46.92 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.