>input_sequence_86678
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-------------------------------------------------------ATGATGGACTGGGCCCCTGTGGTGG
TAGGGGTGGTGTTGTTCGTGGTGCTCACGCCGGGGCTGCTGTTCGAGCTGCCGGGGACGTATGGGAGGATCGACTTCGGC
GGCCTCCGCACCACCGGCAAGTCCATCTTCGTCCACACCCTTGTCTTCTTCACCATCTTCGCCGTCATCATCCTCGGGTT
CGAAGTCCACATCTACACCGGCGGGCCTAGCTAG----------------------------------------------
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>chr2A_1_TraesCS2A01G283700
TTGTATCCTTTATTCCAAAAATCAATAAAAAATACATAGCAGTCATGTTGTTTTCCT-AAAAAAAGACGAGCAAAGAATT
GAAAAAAGAACA--------------------------------------------------------------------
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---------------------------------------------TAGATGAAGAAGGTGAACAGTAACAATGGCTGGCT
GGAGCATGATTGAAAAGAACAACCGCT---TTAAAAATAAAAGAACGAATTGAACAAAATGGGACGATCCAGCCTACGTA
CACGAACATAAATGTAGAAAAACAGTCGTGGTCCAAAAACGTACGCG---------------------------------
-----------------------AACAAGTTTCCGGATCACGACGCAAATCAACGGCTCTAGACAGATGTGCCTATGTGA
ATTTCTGGCTTGTACTTATCATCTCAATTATCTCATCACAATCCAAATTAAGCATACTCCATTGCCCCTCAGTTGGTTAA
TTAGCAAGGATTAGGCCGTGGACGACTGCATAAGCTTCGGCCATTCATCAGGGCCATAACCTTTGGCCATTCTCCAGACC
ACGTGCATCCGACACCACAGCGCCAGTTGTGCCGGTTAATGTGTCTACATCAAAGTACTTCCTCCATAAACAAATATAAA
AGCATT-----------------CAGATCATTAAAGTAGTGACCTAAACACTCTTATATTTTTTTTACAGAGG-------
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--------------------------------AAGTAGTCATCAACATTTAACACTTTCACCCAAAAAAAACGTTTAACA
CTTTGATAACTTCCACCACCCCACTCGGC--------------------------GGCTTTCCCGACACATGATTTCTAA
TCTTTGGCTTCGCAGTTGATTGGCTTTTGATTTTACGTCCAAATCAAAAAAGCACACCACAATGATATACCCTCATCCGA
CGGCATCCGAATCCTTTTTTTTCTTCTTTCAGCATCAAAGCGGTTGTGCATGTCTCGTTGGCCATTAATTCCTCCCTCCC
TTTTCCTTTCCACGTTCCTTCTCGCTCATCCTTCTCATCAACACAAACGCATCTTCCACCATCAGCAGCCGAGGCAGCCG
GTAAGACACAGTGGCCAGCAGGACTGCACTGCCGCAGCAGGAGTGTACACTGTAGATGATGGACTGGGCCCCTGTGGTGG
TAGGGGTGGTGTTGTTCGTGGTGCTCACGCCGGGGCTGCTGTTCGAGCTGCCGGGGACGTATGGGAGGATCGACTTCGGC
GGCCTCCGCACCACCGGCAAGTCCATCTTCGTCCACACCCTTGTCTTCTTCACCATCTTCGCCGTCATCATCCTCGGGTT
CGAAGTCCACATCTACACCGGCGGGCCTAGCTAGCTGCATATGCATTACATGCCTGTGTGCCTCACCTAATGAAGCACCT
CTCGCCAACGTTGCCAAGCCGATCAGCATGCGCCCTGTTTCATATACGTGTGGTTAATTTATTGGTCAAGGTGGCCACAT
ACTCCCTCCGATCCAAAATAGTGGCGCAGTTTTGAATTAAGGTTAATTCAATCTTAATTCAAACATGCGACACTTGTTAT
GAATCAAAGTGAGTAGTTTATGACTATCTCTGTACCGTCTTATATTAAGTTACACAGAACGTGGACAC--TAAAGTAGTT
CGGTGAACTGCAGCTTATTGTTCAGCCTGTACCAAGCGATCAAAGTCTTAATTAACATGCAGCTTCTCATGACCTTTTGT
TGGATTCATCAACATCAGCATAGTTTTGTTTCATTTGGTCTTTTGTCATAGGGTTTGTGGTACATCATGGACGATCCATT
TTGATGAC------------------------------------------------------------------------
------------------------------------------------------------ATGTAAGTTGTTTCATAGGT
GCCAGGCTTTGGTTGGCATCGGTTAATAACCAATACAGTCTTTTTAAATCTCGGTCAACTGAAATTTGATTATATCTCAT
TCGATGCTATATTCGTAAGATCTTACATTGAGATCCATGCATGTTTTTCTTTCTTCTTTCTTAAATGTTATGTCACTTGA
CCGAGACCTAGCCACACTCTAACCAGTAATATATGGTTGTGTGCATCACTCGATGCAAAGGCCGAGATTTATTATCTTTT
TTCAAGGAAAAATAAATAGAAACATACTGAAATAAGTTTAGGACTATGCATGTAAAGTTTAACCTCAAAATACATGTAAT
ATTTTCTGTTTTCTTTAAGAAAGATCGGACGATCTTGGTAATCAACCTCTATATAATAGTGTGCAAATGATCATTTTTTT
CCTACTTTTCTTTGTTACTTTATCTTCTCCCTTATTGACATTCAATAAATAAGGCATAAATAAAATGAGATAAATCAACG
CTAGTAGGAGTTATATTTGCTTCAAAAAGGGTATGGTGTACCCGCAAA
>chr2D_1
TTGTATCCTTTATTCCAAAAATCAATAAAAA-TACGTAGCAGTCCTGTTGTTTTCCTAAAAAAAAGACGAGCAAAGAATT
GAAAGAAAGAACATACTCCACTCAGTTTCATGCATGTAGTCATAATGACAATTAGCTACTTCCTCCACTCAGTTTCTTTG
CATGCATGCGGAGTATTAATGATCCCAGTAAACAAGAAGAAAAGTTAACTTGTAAAGCAGGCATTAAATTTTACATTGTT
ACATGTAATTCAAGTTTGTGGTCTTGTATATAAAAATGGAGGAAGTAGATGAAGAAGGTGAACAGTAACAATGGCTGGCT
GGAACATGATTGAAAAGAACAGCCGCT---TTAAAAATAAA-GAACGAATTGAACAAAATGGGATGATCCAGCCTACGTA
CACGAACATAAATGTAGAAAAACAGTCATGATCCAGAAACGTACACG---------------------------------
-----------------------AACAAGTTTACGGATCACGACGTAAACCAACGGCTCTAGACGGATGTGCCTCTGTGA
ATTTCTGGCTTG----TATCATCTCAATTATCTCAGCACAATCCAAATTAAGCATACTCCATTGCTCCTCAGTTGGTTAA
TTAGCAATGATTAGGCCGTGGACGACTGCATAAGCTTCGGCCATTCATCGGGGCC------TTCGGCCATTCTCCAGACC
ACGTGCATCCGACACCACAGCGCCGGTTGTGCCGGTTAATGTGTCTACATCAAAGTAGACATC-----------------
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---------------------------------------------------------------------AACGTTTAACA
CTTTGACAACTTTCACCACCACCCCGCAAAAAAAAAAATCACCACCCCACTCAGTGGCTTTCCCGACACATGATTTCTAA
TCTTTGGCTTCGCAGTTGATTGGCTTTTGATTTTACGTCCATATCAAAAAAGCACACCACAATGATATACCCTCATCAGA
CGGCATCCGAATCTTTTC--TTCTTCTTTCAGCATCAGAGCAGCTGTGCATGTCTCGTTGGCCATTAATTCCTCCCTCCC
TTTTCCTTTCCACATTCCTTCGCCCTCATTCTTCTCATCAACACAAACACATCTTCCACCATCAGCAGCCGAGGCAGCCG
GTAAGACACATTGGCCAGCAGGACTGTACTGCCGCAGCAGGAGTGTACACTGTAGATGATGGACTGGGCCCCTGTGGTGG
TAGGGGTGGTGTTGTTCGTGGTGCTCTCGCCGGGGCTGCTGTTCGAGCTGCCGGGGACGTATGGGAGGATCGACTTCGGC
GGCCTCCGCACCACGGGCAAGTCCATCTTCGTCCACACCCTTGTCTTCTTCACCATCTTCGCCGTCATCATCCTCGGGTT
CGAAGTCCACATCTACACCGGC--GCCTAGCTAGCTGCATATGCATTACATGCCTGTGTGCCTTACCTAATGAAGCACCT
CTCGCCAACGTTGCCACTCCGATCAGCATGCGCCCTGTTTCATATGCGTGTGGTTAATTGATTAGTCAAGGTGGGCACGT
ACTACCTCCGATCCAAAATAGTTGCGCAGTTTCGAATTAAGGTTAATTCAATCTTAATTTAAACATGTGACACTTATTAT
GAATCAAAGTGAGTAGTTTATTACTATCTCTGTAACGTCTTATATTAAATTACACAGAACGTGGATACTGTAAAGTAGTT
CAGCGAACTGCATCTTATTGTTCAGCCTGTACCAAGCAATCAAAGTCTTAATTAACATACAGCTTCTCATGACCTTTCGT
TGGATTCATCAACATCGGCATAGTTTCGTTTCATTTGGTCTTTTGTCATAGGGTTTGTGGTACATCATGGACGATCCATT
TTGATGACCTCGGACTTTATACTCCATCCGTCCAAAAAAGCTTGTCCCTTATATGGATGTATCTAACATCAAATTAGTGC
TAGATACATCCATTCGAGAAACAAGCTTGGGACAAGCTTTTCCAGACGGAGGAAGTATTTATGTAAGTTGTTTCATAGGT
GCTAGGCTTTGGATGGCATCGGTTAATAACCAATACAGTCTTTCTAAATCTCAGTCAACTGAGATTTCATTATATCTCAG
TAGATGCTATATTCATAAGATCTGACATTGAGATCCGTGCATATTTTTCTTTCTTCTTTCTTAAATGTTATGTCACTTGA
CTGAGACCTAGCCACACTCTAACCAGTAATATATGGTTGTGTGCATCACTCGATGCAGAGGCCGAGATTTATTACCTTTT
TTCAAGGAGAAATAAATAGAAACATACTAAAATAAGTTGGAGGACCATG-------------------------------
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>chr2B_79
-------------------------------------------------------------------------------T
GGAACAAGCACA--------------------------------------------------------------------
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---------------------------------------------TCGAGGAAGAAGGTGAACAGTAACAATGGCTGGCT
GGAACATGATTGAAAAGTGAAAACAAGCGCTTTAACAAAAA-TAACAAATTGAACCGAATGGGATGATCCATCCTACGTA
CACGAACATAAACATAGAAGAACAGTTGGACAAAGTATTATTGCAAGATAAAAATATTGAAAGGGTTTGGAATTTGCATC
TATTTTCGGTCAATTCCAGCCGAAACAAGTTTCCGGGTCACGACGCAAATCAACGGCTCTAGATGGATGTGCCTTTGTGA
ATTTCTGGCTTG----TATCATCTCAATTATCTCAGCACAGTCCAAATTAAGCATACTCCATTGCCCCTCAGTTGGTTAA
TTAGCAATGATTAGGCCGTGGACGACTGCATAAGCTTCGGCCATTCATCGGGGCCATAACCTTCGGCCATTCTCCAGACC
ACGTGCACCCGACACCACAGCGCCAGTTGTGCCGGTTAATGTGTCTACATCAAAGTATGTTGGTGTTAACCATTGTTGTT
TAGGTGTGTGTCATGTTTATTTCCAGTTCATTCATGTAGTTAAAGCTGCGGCAGCCTGTGCACGTAGAGTTATGTTCACG
TGCACGATGCAAAGCTAAATGGATTGTGATTAGTTAGCTGCATGTGTCAGTCTGTGAGGAGTCCGGCCGGTCGAGTTGTG
TAGTAGACCAGAGATGGAGAAAGAAACGGGTGCAGGCAGTTGCGGCATGCACCAAGTGAGGGCTTATCCATCTGCAGAAA
CTTGGAAGTGACTCAAAGTCTGTACGTGTGAGCAGTTAGTGGAGAGATTAATGGGTCAAGCCGTTAGTGGCTTGACCGGT
GTGTTTGCATGCTAGCTAGTGTGTGTGTTGGCTGCTCTATTTAATCCCATGTAATTCAGTTCATTCAGTGTGTGAAGAAA
TACAGAAAAAGGCATAAGTGTGCGTGGTGCCAAGTGTGTGAGTGTCTCTTCGACCTTCTGTCCGTGTGTGTTTCTTCAGG
GCAGAGGCTTCACTTGGCATCAGAGCGATGGTGACTGAAGGTTCGCGCACTCCGTCGCCGGGTCGCCGCCGTGTCTCAGC
CTCGCCGGTGGCGCGCAGAGGCCGGAGCCCGACGCGGCGTGGCTGCCGCGAGGTGGTGGTGCAGCAGGAGGTCGTCCACC
AGGCCAGCAGCACCGTCGTCTACCCGGAGCTAACGACGATGAACTACTTCGAGTGGTCACTGATCATGAAGGTGAACATG
GAGGCCCAGCGCGTGTGGGACGCCATCGAGGGAGGCGGGAGCTTCAGCCAGGACAGGGTGGCGCTTGCGGCAATTCTGCG
AGCCGTGCCGGAGGAGATGCACTCCACGCTTGTCGTGAAGGCGACGACAAAGGAGGCATGGGATGCCATCAAGATCATGC
GGGTCGGTGATGCCCGCGTCCGTGAGGCCAAGGCACAGACTCTCCTCAAGGAGTTTGATGCCGTCCTCATGAGAAGCGGC
GAGACCCTCGACGAGCTCGCCATGCGCATGAATGGGATCGCCAACAAATTGCGCACGCTCGGCGAGAACCTCGACGAGGT
GAAGGTCGTGAAGAAGCTTCTCCGCATCGTGCCGTCCAAGTATACCCAGGTAGCTATTGCCATTGAACAACTTCTTGATC
TTAAAACCATGTCCGTGCAAGAGCTTGTGGGAAGGCTCAAAACGGCGGAGGACCGGAGCGACTTGGACGAGGGCGCCAAC
AACTACAACCAGGGTGGTGGGAGTCGCCTGCTTCTCAAAGGAGTGGCTTTCTCGCCACCGCAGCGGCGCCGGCAAGAAGA
AGAGAAACTTCGACATTCGGAAGGTCCGCTGCTACACTTGCCAAGAGTATGGGCATTACTCGAGGTACTGCACCGAGCCG
AAGAAGGAGCGGGCGCTTCTCGCCGACGCGACCGCCGACGACAACCCGAGGCTATACTGAAGGTTGCCATGGAGTTCCCA
ATAAAGCACAACAAGGTTAAGGGGGTGATTGTTGGTGTTAATCATTGTTGTTTAGGTGTGTGTGTGTCATGTTTATTTCC
AGTTCATCCATGTAGTTGAAACTGCGGTAGCCTGTGCACGTAGAGTTGTGTTCACGTGCACGATGCAAAGCTAAATGGGT
TGTGATTAGTTAGCTGCATGTGTCAGTCTGTGAGGAGTCCGGCCGGCCGAGTTGTGTAGCAGATCAGAGATGGAGAAAGA
AGCGGGAGCAGGCAGTTGCGGCATGCACCAAGTGAGGGCTTATCCATCTGCAGAAACTTGGGAGTGACTCAAAGTCTGTA
CGTGTGAGCAGTTAGTGGAGAGATTAGTGGGTCAAGCCGTTAGTGGCTTGACCGGTGTGTTTGCATGCTAGCTAGTGCGT
GTGTTGGCTGCTCTATTTAAGCCCATGTAAATCAGTTCATTGAGTGTGTGAAGAAATACAGAAAAAGGCATAAGGGTGCG
TGGTGCCAAGTTCGTGAGTGTCTCTGGCTTCAAAATAGTCATCAACCCCC------------------------------
--------------------------------------------------------------------CATGATTTCTAA
TAGTTGGCTTCGCAGTTGATTGGCTTTTGATTTTACGTCCAAATCAAAAAAGCACACCACAATGATATACCCTCATCCGA
CGGCATCCGAATCCTTTT--TTCTTCTTTCAGCATCAGAGCAGCTGTGCATGTCTCCTTGGCCATTAATTCCTCCCTCCC
TTTTCCTTTCCACATTCCTTTGCGCTCATCCTTCTCATCAACACAAACACATCTTCCACCATCAGCAGCCGAGGCAGCCG
GTAAGACACAGTGGCCAGCAGGACTGCACTGCCGCAGCAAGAGTGTACACTGTAGATGATGGACTGGGCCCCTGTGGTGG
TAGGGGTGGTGTTGTTCGTGGTGCTCTCGCCGGGGCTGCTGTTCGAGCTGCCGGGGACGTATGGGAGGGTCGACTTCGGC
GGCCTCCGCACCACCGGCAAGTCCATCTTCGTCCACACCCTTGTCTTCTTCACCATCTTCGCCATCATCATCCTCGGGTT
CGAAGTCCACATCTACACCGGC--GCCTAGGTAGCTGCATATGCATTACATGCCTGTGTGCCTTACCTAATGAAGCACCT
CTCGCCAACGTTGCCACTCCGATCAGCATGCGCCCTGTTTCATATGCGTGTGGTTAATTGATTGGTCAAGGTGGGCACAT
ACTCCCTCCGAT----------GGCGCAATTTTGAATTAAAGTTAGTTCAATCTTAATTCAAACCTATGGCACTTATTAT
GGATCGAAGTGT------------TATCTCTGTAACGTCTTATATTAAGTTACAGAGAACGTGGACACTGTAAAGTAGTT
CGGTGAACTGCAGCTTATTGTTCAGCCTGTACCAAGCGATCAAAGCCTTAATTAACAT-CAGCTTCTCATGACTTTTCGT
TGGATTCATAAACATCGGCATAGTTTCGTTTCATTTGGTCTTTTGTCTTAGGGTTTGTGGTACATCATGGACGATCCATT
TTGATGACCTCTGACTTTA-------------------------------------------------------------
-------------------------------------------------------TATTTATGTAAGTTGTTTCATGGGT
GCCAGGCTTTGGTTGGTATCGTTAAATAACCAATACACTCTTTTTAAATCTCAGTCAACTGAAACTTGATTATGTCCCAG
TTGATACTATATTCATAAGATTTTATATTGACATTCATGCATTTTTTTCTTTTTCCTTTCGTATATGTTATGTCATTTGA
CTTAGATCTAGCCACATCCTAACAAATAATATATGGTTGTGTGCATCACTCGATGCAGTGGCCGAGAGTTATTACCTTTT
TCCAAAGAAAAATAAATAGAAACATACTAAAATAAGTTTAGGACTATATATGTAAAGTTTAACCTCAAAATACATGTAAT
ATTTTCTATTTACTTTAAGAAAGATGGGACGATCTTGGTAATCAATCTCTATATAATAGGGTGCAAATGATCAATTTTTT
C-TACTTTTCTTTGTTACTTCATCTTCTCCCTTATTGACATTCGAGAAACAACAC----ATAAAATGAGATAAATCAACG
CTAGTAGGAGTTATATTTGCTTCAAAAAGGATATGGTGTACCCGCAAA
>SNPs
-------------------------------S---S--------S-----------------------------------
----S---S-----------------------------------------------------------------------
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---S-------------------------------------S----------------------S---------------
------------------------------S----S--------S-----------------------------------
----------------------------------------------------------------S---------S-----
------------SSSS-------------------S--------------------------------------------
-------S-----------------------------------------S-------------S----------------
---------------------------------------------------------SS-SSSSSS---S--SSSS-SSS
SSSS-S--------------------S-----S-S-----S-SSSSSS-SSSSSSS-S-SSSSS-SSSSSSSS-------
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----------------------------------S-----------SSSSSSSSSSSSSSSSSSSSSSS-----------
------S-----S-------S-S-SSSSS---------------------------------------------------
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------------------SS-----------------S---S-S------------------------------------
-------------S-------S--------------------------S-------------------------------
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--------------------------S-----------------------------------------------------
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----------------------SS---------------------------------------S----------------
----------------SS---------------------------S-------------S--------------S-----
-------------------------------------------------------------------S-------S----
---------------------S------------S---------------------------------------------
----------------------------------------------------------S------------------S--
----------------S---------S-----------------------------------------------------
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----------------------------------------------------S--------------------------S
-S------------S---------------------------S-------------------------------------
-S-------------------------------------------------------S----------------S-----
----------------------------S------------------SS-------------------------------
-------S---S-------------S-------------------S-------------S-------------S------
-S------------------S----------------------S-S---S--SS-SSSS---------------------
------------------------------S-----------------
>forward_2826
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------TAACTTCCACCACCCCACTC------------------------------------------------------
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>reverse_4162
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-CGAGACCTAGCCACACTCTA-----------------------------------------------------------
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