Multiple sequence alignment - TraesCS2A01G266600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G266600 chr2A 100.000 2778 0 0 1 2778 423780152 423777375 0.000000e+00 5131
1 TraesCS2A01G266600 chr4A 92.333 2752 132 22 1 2716 647129786 647132494 0.000000e+00 3840
2 TraesCS2A01G266600 chr6D 88.285 1289 128 15 319 1596 390478647 390479923 0.000000e+00 1522
3 TraesCS2A01G266600 chr6D 83.647 1168 113 37 1596 2716 390479953 390481089 0.000000e+00 1027
4 TraesCS2A01G266600 chr6D 83.750 240 30 7 89 319 390478344 390478583 4.660000e-53 219
5 TraesCS2A01G266600 chr3D 87.577 1296 133 16 319 1596 81738852 81740137 0.000000e+00 1476
6 TraesCS2A01G266600 chr3D 84.556 1172 101 36 1596 2716 81740167 81741309 0.000000e+00 1088
7 TraesCS2A01G266600 chr2D 84.517 1169 104 34 1596 2715 60607823 60606683 0.000000e+00 1085
8 TraesCS2A01G266600 chr2D 88.599 728 72 7 319 1042 60609338 60608618 0.000000e+00 874
9 TraesCS2A01G266600 chr2D 87.136 583 61 9 1025 1596 60608432 60607853 0.000000e+00 649
10 TraesCS2A01G266600 chr2D 83.929 336 37 8 1 319 60609737 60609402 3.480000e-79 305


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G266600 chr2A 423777375 423780152 2777 True 5131.000000 5131 100.000000 1 2778 1 chr2A.!!$R1 2777
1 TraesCS2A01G266600 chr4A 647129786 647132494 2708 False 3840.000000 3840 92.333000 1 2716 1 chr4A.!!$F1 2715
2 TraesCS2A01G266600 chr6D 390478344 390481089 2745 False 922.666667 1522 85.227333 89 2716 3 chr6D.!!$F1 2627
3 TraesCS2A01G266600 chr3D 81738852 81741309 2457 False 1282.000000 1476 86.066500 319 2716 2 chr3D.!!$F1 2397
4 TraesCS2A01G266600 chr2D 60606683 60609737 3054 True 728.250000 1085 86.045250 1 2715 4 chr2D.!!$R1 2714

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
191 202 1.180456 TGGAAGTAGGTGCGGACGAA 61.18 55.0 0.0 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1895 2255 0.178981 ACAACATGCTCCAAGCTGGT 60.179 50.0 0.0 0.0 42.97 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.463050 TGTCCCCTTTGTATTTTCTGGT 57.537 40.909 0.00 0.00 0.00 4.00
39 40 2.088423 GGTGCGTGATTTTGGATGGTA 58.912 47.619 0.00 0.00 0.00 3.25
61 62 5.464030 ACTCGCTAAGTTGAGACCTTTTA 57.536 39.130 0.00 0.00 33.03 1.52
98 107 4.994852 TGTGTATGACAGCAAGAGGTAAAC 59.005 41.667 0.00 0.00 0.00 2.01
190 201 1.604308 TGGAAGTAGGTGCGGACGA 60.604 57.895 0.00 0.00 0.00 4.20
191 202 1.180456 TGGAAGTAGGTGCGGACGAA 61.180 55.000 0.00 0.00 0.00 3.85
213 236 3.762429 ATCTGTGCGGCGGATGCAT 62.762 57.895 9.78 0.00 45.34 3.96
227 259 2.562298 GGATGCATGTCAAAAAGGGTCA 59.438 45.455 2.46 0.00 0.00 4.02
232 264 1.670791 TGTCAAAAAGGGTCACCGAC 58.329 50.000 0.00 0.00 43.47 4.79
295 327 1.353022 TGGCCGGAAAAGAAGGTATGT 59.647 47.619 5.05 0.00 0.00 2.29
296 328 2.224917 TGGCCGGAAAAGAAGGTATGTT 60.225 45.455 5.05 0.00 0.00 2.71
325 421 7.669427 TCTGCAGATCCACAAAATTAAATTGT 58.331 30.769 13.74 4.63 41.50 2.71
352 448 7.356089 TGTTTGTACTTCCTGAACTTCTAGA 57.644 36.000 0.00 0.00 0.00 2.43
427 523 9.665719 AACTGTTAATGAAGTTTGGTGAAATTT 57.334 25.926 0.00 0.00 32.75 1.82
524 620 5.748402 AGGAATGAATGAACATGTAGCTGA 58.252 37.500 0.00 0.00 0.00 4.26
536 632 3.900966 TGTAGCTGATGAGTTGATGCT 57.099 42.857 0.00 0.00 34.92 3.79
557 653 4.201950 GCTAAAGGACATTGTAGCATGTGG 60.202 45.833 4.08 0.00 39.03 4.17
567 663 6.886459 ACATTGTAGCATGTGGAAAGTAGAAT 59.114 34.615 0.00 0.00 0.00 2.40
580 676 9.832445 GTGGAAAGTAGAATATTGTAGGAATCA 57.168 33.333 0.00 0.00 0.00 2.57
615 713 1.606668 GTTCCGGAGTTGATTGTGCAA 59.393 47.619 3.34 0.00 0.00 4.08
689 788 3.316029 TGAGACTGCAAAAACTGATGTGG 59.684 43.478 0.00 0.00 0.00 4.17
774 873 2.829384 GGTGGTTGCAGGGTGAGGA 61.829 63.158 0.00 0.00 0.00 3.71
827 926 3.350833 TCCTAACCGGACTACTGTTCTC 58.649 50.000 9.46 0.00 36.69 2.87
875 974 3.245730 ACAATCCTGGGGACAATGTCATT 60.246 43.478 15.86 2.34 42.06 2.57
970 1069 4.706842 AGGATTTGGCATTAGATACGGT 57.293 40.909 0.00 0.00 0.00 4.83
976 1075 4.746535 TGGCATTAGATACGGTGAAAGA 57.253 40.909 0.00 0.00 0.00 2.52
1050 1352 3.506067 GCGGTATGGGAATAAGGATTTGG 59.494 47.826 0.00 0.00 0.00 3.28
1094 1396 0.961857 TCGTGCGGGAGTTGTAGCTA 60.962 55.000 0.00 0.00 0.00 3.32
1182 1489 2.011947 CGATTGCCTTGCTCTCATCAA 58.988 47.619 0.00 0.00 0.00 2.57
1199 1506 1.819288 TCAAGTTGTTGCGGTCCAAAA 59.181 42.857 2.11 0.00 34.68 2.44
1232 1539 0.179137 CATAGCAGAACGCCGTGAGA 60.179 55.000 0.00 0.00 44.04 3.27
1233 1540 0.101399 ATAGCAGAACGCCGTGAGAG 59.899 55.000 0.00 0.00 44.04 3.20
1251 1558 0.839946 AGGAGCACAACCACAGAAGT 59.160 50.000 0.00 0.00 0.00 3.01
1345 1654 8.517062 ACTTCGAGGAGCTACTACTTATTTTA 57.483 34.615 0.00 0.00 0.00 1.52
1406 1717 1.488527 GGGCGACTATTGACGATGAC 58.511 55.000 3.13 0.00 33.54 3.06
1434 1745 2.515523 ATGCGACCCATGAGCAGC 60.516 61.111 0.00 0.00 44.55 5.25
1443 1754 2.025981 ACCCATGAGCAGCTAACATCAA 60.026 45.455 0.00 0.00 0.00 2.57
1476 1787 5.774690 TGAGAAGCAGGGTGTTTTAATTCAT 59.225 36.000 0.00 0.00 0.00 2.57
1560 1876 1.841302 TTGGATGAGAGCGCAACCCT 61.841 55.000 11.47 0.00 30.32 4.34
1613 1959 1.375908 GCCATGAGTGCGGACAAGA 60.376 57.895 10.52 0.00 0.00 3.02
1648 1994 4.608948 AGACAGAGTAAAAGGTGTGAGG 57.391 45.455 0.00 0.00 0.00 3.86
1702 2059 3.517901 TCAACGGGAAGATGAACCTACAT 59.482 43.478 0.00 0.00 0.00 2.29
1748 2105 7.175990 GGTGTGTTTCCCTAAATCTATCAAACA 59.824 37.037 0.00 0.00 31.55 2.83
1793 2153 4.574674 TGTTGAGGGATTAGCAGTGATT 57.425 40.909 0.00 0.00 0.00 2.57
1822 2182 4.860802 ATGTGTATTGACATCCCCTTGA 57.139 40.909 0.00 0.00 38.04 3.02
1851 2211 9.607988 TTAAGAACATTCAGACAAGTAGTTGAA 57.392 29.630 17.23 1.11 37.10 2.69
1895 2255 6.183361 ACGGTTATGAATGGATGATGGTCTAA 60.183 38.462 0.00 0.00 0.00 2.10
2120 2501 6.072112 TGTTTAGGATTTGAAAGTGCTGTC 57.928 37.500 0.00 0.00 0.00 3.51
2142 2525 4.521639 TCTTTTCTGAATGCTGAACATGCT 59.478 37.500 0.00 0.00 39.60 3.79
2246 2630 8.867112 ACGTAATATCTGTTACACAATACTGG 57.133 34.615 0.00 0.00 34.90 4.00
2252 2636 6.921486 TCTGTTACACAATACTGGAACCTA 57.079 37.500 0.00 0.00 0.00 3.08
2375 2770 0.106569 CCAGCTTGGATATGGTGGCA 60.107 55.000 0.00 0.00 40.96 4.92
2378 2773 0.752743 GCTTGGATATGGTGGCAGCA 60.753 55.000 22.88 22.88 0.00 4.41
2418 2813 4.006319 GGATGAAAAGTGACAAGAGGGAG 58.994 47.826 0.00 0.00 0.00 4.30
2432 2827 2.183679 GAGGGAGCTTGAAGAGGAAGA 58.816 52.381 0.00 0.00 0.00 2.87
2447 2842 0.249573 GAAGACGTTGTTCGGTGGGA 60.250 55.000 0.00 0.00 44.69 4.37
2481 2876 1.255882 AAATGGGTCAGCGAATGCAA 58.744 45.000 0.00 0.00 46.23 4.08
2496 2896 1.226295 GCAACGGGCATTAGAACGC 60.226 57.895 0.00 0.00 43.97 4.84
2581 2983 4.376146 ACATTAATGTGTTTGGTTGGTGC 58.624 39.130 20.19 0.00 40.03 5.01
2587 2989 1.372872 GTTTGGTTGGTGCGCCATC 60.373 57.895 21.95 19.40 45.56 3.51
2637 3041 7.335924 TGCTTTTAATACGCAGAGAAATACCTT 59.664 33.333 0.00 0.00 0.00 3.50
2669 3073 2.123425 TAAGAGGGAGCGGGCGAT 60.123 61.111 0.00 0.00 0.00 4.58
2716 3120 2.301577 GCTCAGATAGGCACTTTCGT 57.698 50.000 0.00 0.00 41.29 3.85
2717 3121 3.438297 GCTCAGATAGGCACTTTCGTA 57.562 47.619 0.00 0.00 41.29 3.43
2718 3122 3.117046 GCTCAGATAGGCACTTTCGTAC 58.883 50.000 0.00 0.00 41.29 3.67
2719 3123 3.181485 GCTCAGATAGGCACTTTCGTACT 60.181 47.826 0.00 0.00 41.29 2.73
2720 3124 4.036498 GCTCAGATAGGCACTTTCGTACTA 59.964 45.833 0.00 0.00 41.29 1.82
2721 3125 5.450137 GCTCAGATAGGCACTTTCGTACTAA 60.450 44.000 0.00 0.00 41.29 2.24
2722 3126 6.710597 TCAGATAGGCACTTTCGTACTAAT 57.289 37.500 0.00 0.00 41.29 1.73
2723 3127 6.736123 TCAGATAGGCACTTTCGTACTAATC 58.264 40.000 0.00 0.00 41.29 1.75
2724 3128 5.625721 CAGATAGGCACTTTCGTACTAATCG 59.374 44.000 0.00 0.00 41.29 3.34
2725 3129 3.863142 AGGCACTTTCGTACTAATCGT 57.137 42.857 0.00 0.00 27.25 3.73
2726 3130 4.184079 AGGCACTTTCGTACTAATCGTT 57.816 40.909 0.00 0.00 27.25 3.85
2727 3131 4.171754 AGGCACTTTCGTACTAATCGTTC 58.828 43.478 0.00 0.00 27.25 3.95
2728 3132 3.305361 GGCACTTTCGTACTAATCGTTCC 59.695 47.826 0.00 0.00 0.00 3.62
2729 3133 3.922240 GCACTTTCGTACTAATCGTTCCA 59.078 43.478 0.00 0.00 0.00 3.53
2730 3134 4.565564 GCACTTTCGTACTAATCGTTCCAT 59.434 41.667 0.00 0.00 0.00 3.41
2731 3135 5.745294 GCACTTTCGTACTAATCGTTCCATA 59.255 40.000 0.00 0.00 0.00 2.74
2732 3136 6.420008 GCACTTTCGTACTAATCGTTCCATAT 59.580 38.462 0.00 0.00 0.00 1.78
2733 3137 7.592533 GCACTTTCGTACTAATCGTTCCATATA 59.407 37.037 0.00 0.00 0.00 0.86
2734 3138 8.899776 CACTTTCGTACTAATCGTTCCATATAC 58.100 37.037 0.00 0.00 0.00 1.47
2735 3139 8.844244 ACTTTCGTACTAATCGTTCCATATACT 58.156 33.333 0.00 0.00 0.00 2.12
2738 3142 8.256611 TCGTACTAATCGTTCCATATACTACC 57.743 38.462 0.00 0.00 0.00 3.18
2739 3143 8.097038 TCGTACTAATCGTTCCATATACTACCT 58.903 37.037 0.00 0.00 0.00 3.08
2740 3144 8.725148 CGTACTAATCGTTCCATATACTACCTT 58.275 37.037 0.00 0.00 0.00 3.50
2770 3174 8.691661 TTTTAAGCAAGGAAAGAACTATGAGT 57.308 30.769 0.00 0.00 0.00 3.41
2771 3175 8.691661 TTTAAGCAAGGAAAGAACTATGAGTT 57.308 30.769 0.00 0.00 41.95 3.01
2772 3176 6.566197 AAGCAAGGAAAGAACTATGAGTTG 57.434 37.500 0.00 0.00 38.80 3.16
2773 3177 5.869579 AGCAAGGAAAGAACTATGAGTTGA 58.130 37.500 0.00 0.00 38.80 3.18
2774 3178 6.479884 AGCAAGGAAAGAACTATGAGTTGAT 58.520 36.000 0.00 0.00 38.80 2.57
2775 3179 6.373774 AGCAAGGAAAGAACTATGAGTTGATG 59.626 38.462 0.00 0.00 38.80 3.07
2776 3180 6.372659 GCAAGGAAAGAACTATGAGTTGATGA 59.627 38.462 0.00 0.00 38.80 2.92
2777 3181 7.066766 GCAAGGAAAGAACTATGAGTTGATGAT 59.933 37.037 0.00 0.00 38.80 2.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.006940 GAGTACCATCCAAAATCACGCA 58.993 45.455 0.00 0.00 0.00 5.24
39 40 4.338379 AAAAGGTCTCAACTTAGCGAGT 57.662 40.909 0.00 0.00 41.47 4.18
61 62 2.317371 TACACACCCAAATTGGCCAT 57.683 45.000 6.09 0.00 35.79 4.40
98 107 5.559608 CGGCTACATCAGAATATTGCTGTTG 60.560 44.000 16.30 16.30 38.44 3.33
117 126 2.682136 TGGGTAGTGCAGCGGCTA 60.682 61.111 10.92 0.00 41.91 3.93
190 201 2.244117 ATCCGCCGCACAGATCTGTT 62.244 55.000 25.84 8.73 42.83 3.16
191 202 2.725312 ATCCGCCGCACAGATCTGT 61.725 57.895 22.89 22.89 46.17 3.41
213 236 1.065345 TGTCGGTGACCCTTTTTGACA 60.065 47.619 4.06 4.06 32.93 3.58
227 259 1.069765 CTGCTCCAACACTGTCGGT 59.930 57.895 0.00 0.00 0.00 4.69
232 264 2.030540 CCAATTGACTGCTCCAACACTG 60.031 50.000 7.12 0.00 0.00 3.66
238 270 4.502087 CGATCTATCCAATTGACTGCTCCA 60.502 45.833 7.12 0.00 0.00 3.86
325 421 9.706691 CTAGAAGTTCAGGAAGTACAAACATAA 57.293 33.333 5.50 0.00 0.00 1.90
352 448 2.356695 GGACACACGCCTGTAACTTTTT 59.643 45.455 0.00 0.00 0.00 1.94
524 620 5.948162 ACAATGTCCTTTAGCATCAACTCAT 59.052 36.000 0.00 0.00 0.00 2.90
536 632 5.172687 TCCACATGCTACAATGTCCTTTA 57.827 39.130 0.00 0.00 38.75 1.85
615 713 5.882557 CCATCTATGCTACTTTTGGTTCAGT 59.117 40.000 0.00 0.00 0.00 3.41
670 768 2.397549 GCCACATCAGTTTTTGCAGTC 58.602 47.619 0.00 0.00 0.00 3.51
689 788 1.195222 CAAAAATTTCCAAGCAGCCGC 59.805 47.619 0.00 0.00 38.99 6.53
798 897 2.203015 CCGGTTAGGACATGGCGG 60.203 66.667 0.00 0.00 45.00 6.13
823 922 2.630098 CCATGGATAGCCTTCTCGAGAA 59.370 50.000 25.57 25.57 34.31 2.87
827 926 2.918712 AACCATGGATAGCCTTCTCG 57.081 50.000 21.47 0.00 34.31 4.04
875 974 0.106469 TTGTACCCAAAGCTGGCACA 60.106 50.000 0.00 0.00 41.99 4.57
970 1069 5.241403 TCTCCACATTTAGCCTTCTTTCA 57.759 39.130 0.00 0.00 0.00 2.69
976 1075 2.912956 TGTCCTCTCCACATTTAGCCTT 59.087 45.455 0.00 0.00 0.00 4.35
1094 1396 7.423844 AACAGGAAAAAGGAGAGAACATTTT 57.576 32.000 0.00 0.00 35.74 1.82
1182 1489 1.546476 TGTTTTTGGACCGCAACAACT 59.454 42.857 0.00 0.00 0.00 3.16
1199 1506 4.917385 TCTGCTATGTACCAACCATTGTT 58.083 39.130 0.00 0.00 34.14 2.83
1232 1539 0.839946 ACTTCTGTGGTTGTGCTCCT 59.160 50.000 0.00 0.00 0.00 3.69
1233 1540 1.334869 CAACTTCTGTGGTTGTGCTCC 59.665 52.381 0.00 0.00 39.14 4.70
1251 1558 2.481441 ACCTCCTGTGCCATAGATCAA 58.519 47.619 0.00 0.00 0.00 2.57
1339 1648 9.267084 GCAATTCAACCCTTTTTGACTAAAATA 57.733 29.630 0.00 0.00 35.18 1.40
1345 1654 4.405358 TCAGCAATTCAACCCTTTTTGACT 59.595 37.500 0.00 0.00 35.18 3.41
1434 1745 8.390354 TGCTTCTCAAAACGATATTGATGTTAG 58.610 33.333 0.00 0.00 36.30 2.34
1443 1754 3.941483 CACCCTGCTTCTCAAAACGATAT 59.059 43.478 0.00 0.00 0.00 1.63
1476 1787 6.680874 AAAAAGCAAGCAATCAACAAATCA 57.319 29.167 0.00 0.00 0.00 2.57
1560 1876 0.955428 GAACGCTGCCTGTTCCATCA 60.955 55.000 8.63 0.00 39.80 3.07
1613 1959 0.969894 CTGTCTTCCTCACGGACCTT 59.030 55.000 0.00 0.00 39.60 3.50
1680 2026 2.901192 TGTAGGTTCATCTTCCCGTTGA 59.099 45.455 0.00 0.00 0.00 3.18
1683 2029 2.420129 GCATGTAGGTTCATCTTCCCGT 60.420 50.000 0.00 0.00 0.00 5.28
1702 2059 2.290896 CCTCTTAACCCAACCAGATGCA 60.291 50.000 0.00 0.00 0.00 3.96
1748 2105 7.227116 ACAACAAAAATTCAGCAATGCATACTT 59.773 29.630 8.35 0.00 0.00 2.24
1793 2153 6.545666 GGGGATGTCAATACACATATGACAAA 59.454 38.462 10.38 0.00 41.85 2.83
1827 2187 7.770897 ACTTCAACTACTTGTCTGAATGTTCTT 59.229 33.333 0.00 0.00 31.00 2.52
1851 2211 6.396829 ACCGTACACTACTTAAGAACAACT 57.603 37.500 10.09 0.00 0.00 3.16
1895 2255 0.178981 ACAACATGCTCCAAGCTGGT 60.179 50.000 0.00 0.00 42.97 4.00
2065 2444 8.986477 ATGAATGAAAAACAACTAGCATTACC 57.014 30.769 0.00 0.00 0.00 2.85
2120 2501 4.806330 AGCATGTTCAGCATTCAGAAAAG 58.194 39.130 0.00 0.00 35.19 2.27
2170 2553 7.560991 TCCTGAATACATGCAAAATTACCATCT 59.439 33.333 0.00 0.00 0.00 2.90
2246 2630 1.203287 GTCACCCACCGTAGTAGGTTC 59.797 57.143 0.00 0.00 43.00 3.62
2262 2646 5.297029 GCTTAACTCCCATATCAAAGGTCAC 59.703 44.000 0.00 0.00 0.00 3.67
2345 2740 1.209261 TCCAAGCTGGCGTCAATATCA 59.791 47.619 0.00 0.00 37.47 2.15
2353 2748 0.464373 CACCATATCCAAGCTGGCGT 60.464 55.000 0.00 0.00 37.47 5.68
2375 2770 2.037136 GCAACCAGATCGTGCTGCT 61.037 57.895 0.00 0.00 34.56 4.24
2378 2773 1.376424 CCAGCAACCAGATCGTGCT 60.376 57.895 9.53 9.53 36.12 4.40
2418 2813 2.484889 ACAACGTCTTCCTCTTCAAGC 58.515 47.619 0.00 0.00 0.00 4.01
2432 2827 0.531311 GTCTTCCCACCGAACAACGT 60.531 55.000 0.00 0.00 40.78 3.99
2447 2842 2.643551 CCATTTACTGCCATCCGTCTT 58.356 47.619 0.00 0.00 0.00 3.01
2581 2983 0.588252 CTTTATTCCTGGCGATGGCG 59.412 55.000 0.00 0.00 41.24 5.69
2587 2989 5.877012 AGTATATGCATCTTTATTCCTGGCG 59.123 40.000 0.19 0.00 0.00 5.69
2617 3019 6.046593 CCACAAGGTATTTCTCTGCGTATTA 58.953 40.000 0.00 0.00 0.00 0.98
2637 3041 2.166459 CCTCTTAGATTCGCACTCCACA 59.834 50.000 0.00 0.00 0.00 4.17
2669 3073 4.559502 GCTGATATGTGCTCGTTATCCTGA 60.560 45.833 6.25 0.00 0.00 3.86
2744 3148 9.131791 ACTCATAGTTCTTTCCTTGCTTAAAAA 57.868 29.630 0.00 0.00 0.00 1.94
2745 3149 8.691661 ACTCATAGTTCTTTCCTTGCTTAAAA 57.308 30.769 0.00 0.00 0.00 1.52
2746 3150 8.567948 CAACTCATAGTTCTTTCCTTGCTTAAA 58.432 33.333 0.00 0.00 36.03 1.52
2747 3151 7.936847 TCAACTCATAGTTCTTTCCTTGCTTAA 59.063 33.333 0.00 0.00 36.03 1.85
2748 3152 7.450074 TCAACTCATAGTTCTTTCCTTGCTTA 58.550 34.615 0.00 0.00 36.03 3.09
2749 3153 6.299141 TCAACTCATAGTTCTTTCCTTGCTT 58.701 36.000 0.00 0.00 36.03 3.91
2750 3154 5.869579 TCAACTCATAGTTCTTTCCTTGCT 58.130 37.500 0.00 0.00 36.03 3.91
2751 3155 6.372659 TCATCAACTCATAGTTCTTTCCTTGC 59.627 38.462 0.00 0.00 36.03 4.01
2752 3156 7.912056 TCATCAACTCATAGTTCTTTCCTTG 57.088 36.000 0.00 0.00 36.03 3.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.