>input_sequence_69125
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----------------------------------------------------------ATGCATGCAGGCAATTGTTTGC
GGCTGTGC------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------GGTATGGGAATAAGGATTTGGCACTTGTT
AGTAATTCAAATAATCTCGTGCGGGAGTTGTAGCTAAAATGTTCTCTCCTTTTTCCTGTTTTT----TAGGGAAAGGCGG
GGTT-GAGAACAGTAGGTCGTGTCATTGCGATTGCCTTGCTCTCATCAAGTTGTTGCGGTCCAAAAACAATGGTTGGTAC
ATAGCAGAACGCCGTGAGAGGAGCACAACCACAGAAGTTGATCTATGGCACAGGAGGTTCACTTTCAGGTT-GTGCAAAT
GGAGACAATTCA-TTCTGTTAGGTCGATACTTCGAGGAGCTACTACTTATTTTAGTCAAAAAGGGTTGAATTGCTGAGAC
GACATGTGTGGAGAGGGGCGAC--TATTGACGATGACGGAGTTCCCGATGCGACCCATGAGCAGCTAACATCAATATCGT
TTTGAGAAGCAGGGTGTTTTAATTCATGATTTGTTGATTGCTTGC-TTTTTTT-CTTGCAATGGAGGGTTGCAGATTCCC
CTTTCTGGAGGAATTGGATGAGAGCGCA---ACCCTGATGGAACAGGCAGCGTTCGCGGTGGTTCGTTTGG---------
---------------------CCATGAGTGCGGACAAGAAGGTCCGTGAGGAAGACAGAGTAAAAGGTGTGAGGCGAGAG
GCGTTGCCGCCGGAGTCCGAGATGTTCAACGGGAAGATGAA-----------CCTACATGCATCTGGTTGGGTTAAGAGG
TGTGTTTCCCTAAATCTATCAAACAAGTATGCATTGCT---GAATTTTTGTTGTTGA-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------
>chr2A_1_TraesCS2A01G266600
TGTCCCCTTTGTATTTTCTGGTGCGTGATTTTGGATGGTACTCGCTAAGTTGAGACCTTTTATGGCCAATTTGGGTGTGT
ATGACAGC--------AAGAGGTAAACAACAGCAATATTCTGATGT--AGCCGCTGCACTACCCAGTGGCGCAGCCGGCT
GAGGAGCTGCTGGCGCCTATGGTGGAAGTAGGTGCGGACGAACAGATCTGT------------GCGGCGGATGCATGT--
-------CAAAAAGGGTCACCGACAGTGTTGGAGCAGTCAATTGGATAGATCGACCCTAGAGCTCCTGGCCGGAAAAGAA
GGTATGTTAATTCTGCAGATCCACAAAAT---------------------------------------------------
-------------TAAATTGTTATGTTTGTACTTCCTGAACTTCTAGAAAAAGTTACAGGCGTGTGTCCATGTAAATATG
GATGCAGAGCTGATTGAACTGTTAATGAAGTTTGGTGAAATTTAGAACTAGTATAAGTTAAGTAGAGACGCCTGTAAGCA
GACATTGTAATGGACATTGCATGATTTGTGGTTTGAAGGAATGAATGAACATGTAGCTGATGAGTTGATGCTAAAGGACA
TTGTAGCATGTGGAAAGTAGAATATTGTAGGAATCAGAAGGATC--TGTGTCGTTCCGGAGTTGATTGTGCAACTGAACC
AAAAGTAGCATAGATGGAACAAAATTGTTACTGTTCGAGAACGGTGAGACTGC-AAAAACTGATGTGGCGGCTGCTTGGA
AATTTTTGCGAGCGCTTTGTGTGAAACTATACATGAAACTCATATCTGTTTGTGGGTGGTTGCAGGGTGAGGATAGGTGC
TACTGCCCCAGGAAGGCCGCCATGTCCTAACCGGACTACTGTTCTCGAGAAGGCTATCCATGGTTTCGCCGACAATCCTG
GGGACAATGTCATTGTGCCAGCTTTGGGTACAACCTTTGATTCTGTGCGTGAAGCATACAACTTCTACAACCTGTGTTCG
TGGAGAAAGGATTTGGCATTAGATACGGTGAAAGAAGGCTAAATGTGGAGAGGACAACATGCATGCAGGCAATTGTTTGC
GGCTGTGC------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------GGTATGGGAATAAGGATTTGGCACTTGTT
AGTAATTCAAATAATCTCGTGCGGGAGTTGTAGCTAAAATGTTCTCTCCTTTTTCCTGTTTTT----TAGGGAAAGGCGG
GGTT-GAGAACAGTAGGTCGTGTCATTGCGATTGCCTTGCTCTCATCAAGTTGTTGCGGTCCAAAAACAATGGTTGGTAC
ATAGCAGAACGCCGTGAGAGGAGCACAACCACAGAAGTTGATCTATGGCACAGGAGGTTCACTTTCAGGTT-GTGCAAAT
GGAGACAATTCA-TTCTGTTAGGTCGATACTTCGAGGAGCTACTACTTATTTTAGTCAAAAAGGGTTGAATTGCTGAGAC
GACATGTGTGGAGAGGGGCGAC--TATTGACGATGACGGAGTTCCCGATGCGACCCATGAGCAGCTAACATCAATATCGT
TTTGAGAAGCAGGGTGTTTTAATTCATGATTTGTTGATTGCTTGC-TTTTTTT-CTTGCAATGGAGGGTTGCAGATTCCC
CTTTCTGGAGGAATTGGATGAGAGCGCA---ACCCTGATGGAACAGGCAGCGTTCGCGGTGGTTCGTTTGG---------
---------------------CCATGAGTGCGGACAAGAAGGTCCGTGAGGAAGACAGAGTAAAAGGTGTGAGGCGAGAG
GCGTTGCCGCCGGAGTCCGAGATGTTCAACGGGAAGATGAA-----------CCTACATGCATCTGGTTGGGTTAAGAGG
TGTGTTTCCCTAAATCTATCAAACAAGTATGCATTGCT---GAATTTTTGTTGTTGAGGGATTAGCAGTGATTTTGTCAT
ATGTGTATTGACATCCCCTTGATGTTAAGAACATTCAGACAAGTAGTTGAAGTTGTTCTTAAGTAGTGTACGGTTATGAA
TGGATGATGGTCTAACCAGCTTGGAGCATGTTGTTACTAATTCGAAGGTTGTTGTACAATTGGTTATTAGTTATGACTTA
------------------TAGTTCATGTATGAGTCTTGTTGGATGCTTGTTTCTGAATTTAGCTGCGGAATGGAATCGAG
ATCACGATGTTGAATGTAT-GATTATGGATGTTCAATTCAGTTGGTAATGCTAGTTGTTTTTCATTCATTGGCACTGTTT
AGGATTTGAAAGTGC--TGTCT-TTT-CTGAATGCTGAACATGCTTCTGAAAATGGAAGAGTTATAGGTATTAGATGGTA
ATTTTGCATGTATTCAGGAG-CCTGTAGTTTGTGATTCGAATGTACGTAATATCTGTTACACAATACTGGAACCTACTAC
GGTGGGT---------GACCTTTGATATGGGAGTTAAGCAGCTT--GGAATCAAAATTAACATGATGATGGGGTCTGGTA
GCATAGATAAAAAATAGCATGATATTGACGCCAGCTTGGATATGGTGGCAGCAGCACGATCTGGTTGCTGGGATGAAAAG
TGACAAGAGGGAGCTTGAAGAGGAAGACGTTGTTCGGTGGGAAGACGGATGGCAGTAAATGGGTCAGCGAATGCAACGGG
CATT-----AGAACGCCTGGGGCACGGCCCAGACCGTTGGCAGCCATCT--GAGCCGGCGCTAGCATGACGGCCAACGTC
ACATTAATGTGTTTGGTTGGTGCGCCATCGCCAGGAATAAAGATGCATATACTGCTTTTAATACGC--AGAGAAATACCT
TGTGGAGTGCGAATCTAAGAGGGAGCGGGCGATCAGGATAACGAGCACATATCAGCTCGGGCTCAGATAGGCACTTTCGT
ACTAATCGTTCCATATACTACCTTTATTTTTTAAGCAAGGAAAGAACTATGAGTTGATGAT
>chr4A_1
TGTCCCCTTTGTATTTTCTGGCGCGTGATTTTGGATGGTGCTCGCTAAGTTGAGACCTTCTGTGGCCAATTTGGGTGTGT
ATGATAGCCGTTCTGGAAGAGGTAAATAACAGCAAATATTTTGATGCAAGCCGCTGCACTACCCAGTGGCGCGGCCGGCT
GAGGAGCCGGTGGCGCCTATGGTGGAAGTAGGTGTGGACGGCCAGATCTGTGCGGCGGAAGGGGCGGCGGATGCAGGT--
-------CAAAAAGGGTTGCCGAGAGTGTCAGAGCAGTCAATTGGATAGATCGACCCTAGAGCTCCTGGCCGGAAAATAA
GGTATGGCAATTCTACAGATCCACAAAAT---------------------------------------------------
-------------TAAATTGCTATGTTTGTACTTCCTGAACTTCTAGGAAATGTTACAGGAGTGTGTCCATGTAAATATG
GATGCAGAGCTGATTGAACTGTTAATGAAGTTTGGTGAAATTCAGAACTAGTATAAGTTAAGCAGGGACGCCTGTAAGCA
GACATTGTAATGGACATTGCATGATTTGTGGTTTGAAGGAATGAATGAACATGTAGCTGCTGAGTTGATGCGAAAGGACA
TTGTTGCATGTGAAAAGTAGAAAATTGTAGAAACCGGAAGGATC--TGTGTCGTTCCGGAGTTGATTGTGCAGCTGAACC
AAAAGTAGCATAGATGAAACAAAAATGTTACTGTTCGAGAACGGTGACACTGC-AAAAACTGATGTGTCGGCT-------
---------GAGCGCTTCGTGTGAAACTATACATGAAACTCATATCTGTTTGTGGGTGGTTGCAGGGTGAGGGTAGGTGC
TACTACCCCAGGAAGGACGCCATGTCCTAACCAGACTACTGCTCTGGAGAAGGCTATCCATGGTTTCGCCGACAATCCTG
GGGACAATGTCATAGTGCCAGCTTTGGGTACAACCTTTGATTCTGTGCGTGAAGCATACAACTTCTACAACCTGTGTTCG
TGGAGAAAGGATTTGGCATTAGATACGGCGAAAGCAGGCTAAATGTGGAGAGGACAACATGCATGCAGGCAATTGTTTGC
GGCTGTGC------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------GGTATGGGAATAAGGATTTGACACTTGTT
AGTAATTCAAATAGTCTCGTGCGGGAGTTGTAGCTGAAATGTTCTCTCCTTTTTCCTGTTTTTTTTGTAGGGAAAGGCGG
GGTT-GAGAACAGTAGGTCGTGTCATTGCGATTGCCTTGCTCTCATCAGGTTGTTGCGGTCCAAAGACAATGGTTGGTAC
ATAGCAGAACGCCATGAG--GAGCACAACCACAGAAGCTGATCTGTGGCACATGAGGTTCACTTTCAGGTT-GTGCAAAT
GGAGACAATTCA-TTCTGTTAGGTCGATACTTCGAGGAGCTACTACTCATTTTGGTCAAAAAGGGTTGAATTGCTGAGAC
GACATGTGTGGAGAGGGGCGACTCTATTGACGACGATGGAGTTCCCGATGCGACCCATGAGCAGGTAACATCAGTATCAT
TTTGAGAAGCAGGGTGTTTTAATTCACGATTTCTTGATTGCTTGC-TTTTTTT-CTTGCGATGGAGGG------------
------------ATTGGATGAGAGCGCA---ACCCCGATGGAATAGGCAGCGTTCGCGGTGGTTCATTTGG---------
---------------------CCATGAGTGCGGACAAGCAGGTCCGTGAGGAAGACAGAGTAAAAGGTGTGAGACGAGAG
GCGTCGCTGCCGGAGTCCGAGATGTCCATCGGGAAGATGAA-----------CCTACAGGCATCTGGTTGGGTTAAGGGG
TGTGTTTCCCTAAATCTATCAAACCAGTATGCATTGCT---GAATTTTTGTTGTTGAGGGATTAGCAGTGATGTTGTCAT
ATGTGTATTGACATCCCCTTGGTGTTCAGAACATTCAGACAAGTAGTTGATGTTGTTCTTAAGTAGTGTACGGTTATGAA
TGGATGATGGTCTATCCAGCTTGGAGCGTGTTGTTACTAACTCGAAGGTTGTTGTACAATTGGTTATTAGTTATGACTTA
------------------TAGTTCATGTATGAGTCTTGTTGGATGCTTGTTTCTGAATTTAGCTGCGGAATGGAATCGAG
ATCACGATGCTGAATGTATGGATTATGGATGTTCAATTCAGTTTGTAAGGCTAGTTGTTTATCATTCATTGGCACTGTTT
AGGATTTGAAAGTGC--TGTGT-TTT-CTGAATGCTGAACATGCATCTGAAAATGGAAGAGTTATAGGTGTTCGATGGTA
ATTTTGCATGTATTGAGGAG-CCTGTAGTTTGTGATTCGAATGTACGTAATATCTGTTACACAATACTG-AACCTGCTAC
GGTGGAT---------GACCTTTGATATGGGAGTTAAGCAGCTT--GGAATCAAAATTAACATGATGATGGGGTCTGGTA
GCATAGATAAAAAATAGCACGATATTGTCGCCAGCTTGGATATGGTGGCGGCGGCACGATCTGATTGCTGGGATGAAAAG
TGACAAGAGGGATCTTGAAGAGGAAGGCGCTGTTTGGTGGGGAGACGAATGGCAGTAAATGGGCCAGGGAATGCAGCGGG
CGTTGGAACAGAACGTCTGGGGCACGGCCCAGACCGTTGGCAGCCATCTCTGAGCCGGCGCTAGCGTGACGGCCAAAGTC
GCATTAATGTGTTAGGTTGGTGGGCCATGGCCGGGAATAAAGATGCATATACTGCTTTGAATACGC--ATAGAAATACCT
CGTCGAGTGCGAATCTAAGAGGGAGCGGGCGACCAGGATAACGAGCACATATCAGCTCGGGCTCAGATAGACACTTTCG-
-------------------------------------------------------------
>chr2D_1
TGTCCCCTTTGTATTTTTTGGCGCGTGATTTTGGATGGTGCTTGCTGAGATGAAACCTTTTGTGGCCAATTTGGGTGCGT
AGGACAGCCGTGCTTGAACAGGCAAATGACAGCGATATTCTGATGC--AGCCGCTGCACTACCTAGTGGCGCGGCCGGCT
GAGGAGCCGCTGGCAGCTATGGTGGAAGTAAGTGCGGACGGCCAGATCCAT------------GCGGCGGAAGGGGCAAT
GGATGCACAAGAAGGGTCCACAAGAGCGTCGGAGCAGTCAATTGGATAGACCGACCCTAGAGCTCCTGGCCGGAAAAGAA
GGTATGGCAGTTCTGCAGATCCACAAAATTTTTGGGAACCAACTATGATGGCATGATTTGAAATAGTGTGATCATGCAAA
AAAATTGAAAGGATAAATTGCTATGTTTGTATTGCCTGAACTTCTAGGGAAAGTTACAGGCGTGTCTCCTTGTAAATATA
GGTGCAGGCTTGACTGAACTGTTAATGAAATTTGGTGAAATTCAGAACTAGTGTAAGTTAAGCAGGGATGCTTG--AGCA
GACATTGTAATGGACATTGCATGATTTGTGGTTTGAAGGAATGCA----CACGTAGCCGCTGAATTGATGCGAAAGGACG
CTGTAGCATGTCAAACGCAGAAAATTGTAGGAAACGGAAGGATCTGTGTGTCGTTCCGGAGTTGATTGTGCAGCTGAACC
AAAAGTAACATAGATGGAACGAAATTGTTACTGTTCGAGCACGGTGACACTGCAAAAAACTGATGTGTTGGGTGCTTGGA
AATTTTGGCGAGTGCTTTGTGTGAAACTATACATGAAACTCATATCTGTTTGTGGGTGGTTGCAGGGTGAGAGTAGGTGC
TGCTGTCCCAGTAAGGATGCCATGTCCTAACCGGACTACTGCTCTGGAGAAGGCTATCCATGGTTTTGCCGACAATCTTG
GGGACAATGTCATAGTGCCAACTTTGGGTACAACCTTTGATTCTCTGGGTGAAGCATACGACTTCTATAACCTATATTTG
TGGATAAATGATTTGGCATTAGATACGACAAAAGTAGGCTAAATATGGAGAGGACAAAATGCATGCAGGAAATTGTTTGC
GGCTGTGCAGTATGGGAATAGAAGGGGAGCCTTGGCGCAGTGGTAAAACTGCTGCCTTGTGACCATGAGGTCACAGGTTC
AAGTCTTGGAAACAGCCTCTTACAGAAATGTAGGGTAAGGTTGCGTACTATAGACCCAAAGTGGTCGGACCCTTCCTCGG
ACCCTGCGCAAGCAGGACCTACATGCACCGGGCTGCCCCCCTTCCCTGTGCAGTATGGGAATAAGGATTTGACACTTGTT
AGTATTTCAAATAATTTTGTGCAGGAGCTATAGCTGAAATGTTCTATCTTTTTTCGTGTTTTTTTTTCAGGGAAAGGCGG
GGTTTGACAACACTATGTCGTGTCGTTGCGATTGCCTTGCTCTCATCATGTTGTTGCTGTCCAAAGACAATGATTAGTAC
ATAGCAGAAGACCCTGAG--GAGCACAACTACGGAAGCTGATCCAAGGCACAGGAGGTTCGCTTTCAGGTTTGTGTAGAT
GGAGAGAATTAATTTCGGTTAGGTTGATACTTTGAGGATCTATTACTCGTTTTTGGTCAAAAGGGTCGAATTGCTGAGAC
GACAGGGGTGGAGAGGGGCGACTCCATTGGCGGTGATGGAGTTGCTGATGCGACCCATGAGCAGGTAACATCAGTATCGT
TTTTAGAAGCATGGTGTTTTAATTCGCGATTTGTTGATTGCTTGC-TTTTTTTTCTTGCAATGGAGGGTTGCAGATTCCC
CTTTCTGGAGGAATTGGATGAGAGTGCA---ACCCCGATGGAACCGGCAGCGTTCACAGTGGTTCGTTTGGTACCGGCTG
CCGAGCAATCGGCGGGACTAGCCATGAGCGCGGACAAGCAGGTT-GTGAGGAAGACATGGCAAAAGGTGTGAGATGAAAG
GCGTCGCCGCTGGTGTCCGAGATGTCCACCGGGAAGATGAAGTTCCTACAGTCCTACAGGCACCTGGTTGGGCTAAGAGG
TGTGTTTCCCTAAATCAATCAAATTAGTATGCAT---TGCTGAATATTTGTTGTTGAGCGATTAGGAGTGATGCTGTCAT
ACGTGTATTGACGTCCCCTTGGGGTTCAGAACATTCAGACAGGTAGTTGATGCTGTTCTTAAGTAGTGTACGGTTATGAA
TGGATGATGATCTATCCAGCTTGGAGCATGTTGTTACTAATTTGAAGGTTGCTGTACAATTGGTTATGAGTTATGATTTA
TGGGGAGTGATTTGTAGTTAGTTCATGTATGAGTCTTGTTGGATGCTTGCTTCTGAATTTAGCTGCGCAATGGAATCGAG
ATCATGATGCTCAATGTATGGATTATGGTTGTTCAATTCATTTTGTAATGCTAGTTGTTTTTCATTCATTGGCACTGTTT
ACAGTTTGAAAGTGTTATGTGT-TTT-CTGAGTACTGAACATGCATCTGAAAATGGAAGGGTTATAGGTGATCGATGGTA
ATTTTGCATGCATTCAGGAGCCCTGTAGTTTGTGATTCGGATGC----AATGTATGTTACACAATATTGAGACCTGCTAC
GGTGGACGATGTGAGCGATCTTTGAGATGGGAGTTAAGTAGCTTGGGGAATCAAAATTAACATGATGATGGGGTCTCGTA
GCGCAGATAAAAAATAACACGATGGTCTATCCAGCTT--------------------GATCTGGTTGCTGGGATGAAAAG
AGACAAGACGAATCTTGAAGAGGAAG--ACTGTTCGGTGGGGAGACGGATGGCAGTAAATGGGCCAGCGAAGGTAGCAGG
CATTGAAACAGAA-GTCTGGGCCACGGCCCAGGCCGTTGGCAGCCATCT--GAGCCGGCGCTAGCGTGACGGCTGATGTC
GCATTAATGTGTTAGGTTGGTGGGCCACGCCCGGGAATAAAGATGCATATACTGCTTTGAATACGC--AGGGAAATACCT
CCTGGAGTGCGAATCTAAGAGGGAGCGGGCGACCAGGATAACGAGCACATCTCAGCTCGGGCTCAGATAGGCACTTTC--
-------------------------------------------------------------
>chr6D_89
--------------------------------------------------------------------------------
----------------AACAGGCAAATGACAGCGATATTCTAATGC--AGCCGCTGCACTACCTAGTGGCGCGGCCGGCT
GAGGAGCCGCTAGCAGCTATGGTGGAACTAAGTGCAGACGGCCAGATCCAT------------GCGGCGGAAGGGGAAAT
GGATGCACAAGAAGGGTCGCCGAGAGCGTCGGAGCAGTCAATTGGATAGATCGACCCTAGAGCTCCTGGCCGGAAAAGAA
GGTATGGCAGTTCTACAGATCCACAAAATTTGTGGGAACCAATTATGATGATATGATTTGAAATAGTGTGATCATGCAAA
AAAATTGAAAGGATAAATTGCTATGTTTGTATTGCCTGAACTTCTAGGAAAAGTTACAGGCGTGTCTCCTTGTAAATATG
GATGCAGGGTTGACTGAACTGTTAATGAAATTTGGTAAAATTCAGAACTAGTATAAGTTAAGTAGAGATGCCTGTAAGCA
GACATTGTAATGGACATTGCATGATTTGTGGTTTGAAGGAATGAA----CGCGTAGCCGCTGAATTGATGCGAAAGGACG
CTGTAGCATGTCAAACGCAGAAAATTGTAGGAAACGGAAGGATCTGTGTGTCGTTCCGGAGTTGATTGTGCAGCTGAACC
AAAAGTAGAATTGATGAAGCGAAACTGTTACGGTTCAAGCATGGTGACACTGC-AAAAACTGATGTGTTGGGTGCTTGGA
AATTTTTGCGAGCGCTTTGTGTGAAACTATACATGAAACTCATATTTGTTTGTGGGTGGTTGCAGGGTGAGAGTAGGTGT
TGCTGTCCCAGGAAGGACGCCATGTCCTAACCGGACTACTGCTCTGGAGAAGGCTATCCATGGTTTTGCCGACAATCTTG
GGGACAATGTCATAGTGCCAACTTTGGGTACAATCTTTGATTCTCTAGGTGAAGCATACAACTTCTACAACCTATATTTG
TGGAGAAAGGATTTGGCATTAGATACGGCAAAAGTAGGCTAAATGTTGAGAGGACAAAATGCATGCAGGAAATTCTTTGC
GGCTGTGC------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------AGCATGGGAATAAGGATTTGACACTTGTT
AGTATTTCAAATAATTTTGTGTAGGAGCTGTAGCTGAAATGTTCCATCTTTTTCGTG--TTTTTTTGTAGGGAAAGGCGG
GGTTTGAGAACACTATGTCGTGTCGTTGCGATTGCCTTGCTCTCATCAGGTTGTTGCTGTCCAAAGACAATGGTTAGTAC
ATAGCAAAAGACCGTGAG--GAGC---ACTACGGAAGCTGATCCATGGCACAGGAGGTTCGCTTTCAGGTTTGTGTAGAT
GGAGAGAATTAATTTCGGTTAGGTTGATACTTCGAGGAGCTATTATTCGTTTTTGGTCAAAAGGGTCGAATTGCTGAGAC
GACATGGGTGGAGAGGGGCGACTCCATTGGCGGTGATGGAGTTGCTGATGCGACCCATGAACAGGTAACATCAGTATCGT
TTTTGGAAGTAGGGTGTTTTAATTCGCGATTTGTTGATTGCTTGC-TTTTTT--CTTGCAATGGAGGGTCGCAGATTCCC
CTTTCTGGAGGAATTGCATGAGAGCGCA---ACCCCGATGGAACCGGCAGCGTTCACGGTGGTTCGTTTGGTACCGGCTG
CCGAGTAATCGACGGGACTAGCCATGAGCGCGGACAAGCAGGTT-GTGAGGAAGACATGGCAAAAGGTGTGAGATGAAAG
GCGTCGCCGCAGGTGTCCGAGATGTCCACCGGGAAGATGAAGTTCCTACAGTCCTACAGGCACCTGGTTGGGCTAAGAGG
TGTCTTTCCCTAAATCAATCAAATCGGTATGCAT---T---GAATTTTTGTTGTTGAGCGATTAGGAGTGATGCTGTCAT
ATGTGTATTGACGTCCCCTTGGGGTTCAGAACATTCAGACAAGTAGTTGATGCTGTTCTTAAGTAGTGTACGGTTATGAA
TGGATGATGATCTATCCATCTTGGAGCATGTTGTTACTAATTC-AAGGTTGTTGTACAATTGGTTATGAGTTACGATTTA
TGGGGAGTGCTTTGTAGTTAGTTCATGTATGAGTCTTGTTGGATGCTTGCTTCTGAATTTAGCTGTGCAATGGAATCGAG
ATCATGATGCTCAATGTATGGATTATGGATGTTCAATTCAGTTTATAATGCTAGTTGTTTTTCATTCATTCGCACTGTTT
ACGGTTTGAAAGTGT--TATGTGTTT-CTGAATACTGAACATGCATCTGAAAATGGAAGGGTTATAGGTGACCGATGGTA
ATTTTGCATGCATTCGGGAGCCCTGTAGTTTGTGATTCGGATGC----AATGTATGTTACACAATATTGAGACCTGCTAC
GGTGGATGATGTGAGCGATCTTTGAGATGGGAGTTAAGTAGCTTGGGGAATCAAAATTAACATGATAATGGGTTCTGGTA
GCGCAGATAAAAAATAACACGATGGTCTATCCAGCTT--------------------GATCTGGTTGCTGGGATGAAAAG
AGACAAGACGAATCTTGAAGAGGAAG--GCTGTTCGCTGGGGAGACGGATGGCAGTAAATGGGCCAGCGAAGGTAGCAGG
CATTGGAACAGAA-GTTTGGGCCACGGCCCAGGCCATTGGCAGCCATCT--GAGCCGGCGCTAGCGCGACGGCCGACGTC
GCATTAATGTGTTAGGTTGGTGGGCCACACCCGGGAATGAAGATACATATACTGCTTTGAATACGC--AGGGAAATACCT
CGTGGAGTGCGAATCTAAGAGGAAGCGGGCGACCAGGATAACCAGCACATCTAAGCTCGGGCTCAGATAGGCACTTTCG-
-------------------------------------------------------------
>chr3D_319
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------TAAATTGCTATGTTTGTATTGCCTGAACTTCTAGGAAAAGTTACAGGCGTGTCTCCTTGTAAATATA
GGTGCAGGCTTGACTGAACTGTTAATGAAATTTGGTGAAATTCATAACTAGTGTAAGTTAAGCAGGGATGCCTG--AGCA
GACATTGTAATGGACATTGCATGATTTGTGGTTTGAAGGAATGAA----CACGTAGCCGCTGAATTGATGCGAAAGGACG
CTGTAGCATGTCAAAAGCAGAAAATTGTAGGAAACGGAAGGATCTGTGTGTCGTTCCGGAGTTGATTGTGCAGCTGAACT
GAAAGTAGCATAGATGAAACGAAATTGTTACTGTTCGAGCACGGTGACACTGCAAAAAACTGATGTGTTGCGTGCTTGGA
AATTTTTGCGAGCGCTTTGTGTGAAACTATACATGAAACTCATATCTGTTTGTGGGTGGTTGCAGGGTGAGAGTAGGTGC
TGCTGTCCCAGTAAGGATGCCATGTCCTAACCGGACTACTGCTTTGGAGAAGGCTATCCATGGTTTTGCCGACAATCTTG
GGGACAATGTCATAGTGCCAACTTTGGGTACAACCTTTGATTCTCTGGGTGAAGCATACGACTTCTATAACCTATATTTG
TGGATAAATGATTTGGCATTAGATACGGCAAAAGTAGGCTAAATGTGGAGAGGACAAAATGCATGCAGGAAATTGTTTGC
GGCTGTGC------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------AGTATGGGAATAAGGATTTGACACTTGTT
AGTATTTCAAATAATTTTGTGCAGGAGCTGTAGCTGAAATGTTCTATCTTTTTTCGTGTTTTTTT-GCAGGGAAAGGCAG
GGTTTGACAACACTATGTCGTGTCGTTTCAAGGTCCTTGCTCTCATCATGTTGTTGCTGTCCAAAGACAATGATTAGTAC
ATAGCAGAAGACCCTGAG--GAGCACAACTACGGAAGCTGTTCCATGGCACAGGAGGTTCGCTTTCAGGTTTGTGTAGAT
GGAGAGAATTAATTTCGGTTATGTTGATACTTCGAGGATCTATTACTCGTTTTTGGTCAAAAGGGTCGAATTGCTGAGAC
GACAGGGGTGGAGAGGGGCGACTCCATTGGCAGTGATGGAGTTGCTGATGCGACCCATGAGCAGGTAACATCAGTATCGT
TTTTAGAAGCAGGGTGTTTCAATTCACGATTTGTTGATTGCTTGCTTTTTTTTTCTTGCAATGGAGGGTTGCAGATTCCC
CTTTCTGGAGGAATTGGATGAGAGCGCAGCAACCCCGATGGAACCGGCAGCGTTCACGGTGGTTTGTTTGGTACCGGCTG
CCGAGCAATCGGCGGGACTAGCCATGAGCGCGGACAAGCAGGTT-GTGAGGAAGACATGGCAAAAGGTGTGAGATGAAAG
GCGTCTCCGCAGGTGTCCGAGATGTCCACCGGGAATATGAAGTTCCTACAGTCCTACAGGCACCTGGTTGGGCTAAGAGG
TGTGTTTCCCTAAATCAATCAAATCAGTATGCAT---TGCTGAATATTTGTTGTTGAGCGATTAGGAGTGATGCTGTCAT
ACGTGTATTGACGTCCCCTTGGGGTTCAGAACATTCAGACAAGTAGTTGATGCTGTTCTTAAGTAGTGTACGGTTATGAA
TGGATGATGATCTATCCAGCTTGGAGCATGTTGTTACTAATTCGAAGGTTGCTGTACAATTGGTTATGAGTTATGATTTA
TGGGGAGTGCTTTGTAGTTAGTTCATGTATGAGTCTTGTTGGATGCTTGCTTCTGAATTTAGCTGCGCAATGGAATCGAG
ATCATGATGCACAATGTATGGATTATGGTTGTTCAATCCAGTTTGTAATGCTAGTTGTTTTTCATACATTGGCACTGTTT
ACAGTTTGAAAGTGT--TATGTGTTTTCTGAGTACTGAACATGCATCTGAAAATGGAAGGGTTATAGGTGATTGATGGTA
ATTTTGCATGCATTCAGGAGCCCTGTAGTTTGTGATTCAGATGC----AATGTATGTTACACAATACTGAGACCTGCTAC
GGTGGACGATGTGAGCGATCTTTGAGATGGGAGTTAAGTAGCTTGGGGAATCAAAATTAACATGATGATGGGGTCTGGTA
GCGCAGATAAAAAATAACACGATGGTCTATCCAGCTT--------------------GATCTGGTTGCTA-GATGAAAAG
ACACAAGACGAATCTTGAAGAGGAAG--GTTGTTCGGTGGGGAGACGGATGGCAGTAAATGGGTCAGCGAAGGTAGCAGG
CATTGGAACAGAA-GTCTGGGCCACAGCCCAGGCCGTTGGCAGCCATCT--GAGCCGGCGCTAGCGTGACGACCGACGTC
ACATTAATGTGTTAGGTTGGTGGGCCATGCCCGGGAATAAAGATGCATATACTGCTTTGAATACGCGCAGGGAAATACCT
CGTGGAGTGCGAATCTAAGAGGGAGCGGGCGACCAGGATAACGAGCACATCTCAGCTCGGGCTCAGATAGGCACTTTCG-
-------------------------------------------------------------
>SNPs
---------------------S-----------------S---------------------S------------------
--------------------------S------------------S--------------------------S-------
-------S--------------------------------SS---------------------------------S----
------------------S----S-----S--------------------------------------------------
------SS------------------------------------------------------------------------
--------------------S--------------------------S--------------------------------
------------------------------------------S-------------------------------------
-----------------------------------------------------------S-----------S--------
------------S---------S----------S-S------------------------------------S-------
-----------------------------------------------S-------------------S------------
------------------------------------------------------------------------S-------
----------------S------------------------S---S----------------------------------
-------------S------------------------------------------------------------------
----------------------------S-----S---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------S--------
-----------------------------------S--------------------------------------------
------------------------------------------------S----------------S--------------
------------------SS-----------------S------------------------------------------
-----------------------------------------------S-----S--------------------------
------------------------------------S---------------------------S--------S------
--------------------------S-----------------------------------------------------
-----------------------------------S--------------------------------------------
--------------------------------------S----------------------------------S------
----S--------------------S--S-----------------------------S---------------------
------------------------S-----------------------------------------------S-------
---------------------S----S-----------------------S-----------------------------
--------------S-----------------------------------------------------------------
--------------------------------------------------------------------------------
---------S---------------------------------S------------------------------------
--------------------S-----------------------S------------------------S--S-------
---------------------------------------------------------------------S-----S----
-----S--------------------------------------------------------------------------
-------------------S-------S---------------------S--S---------------------------
------------S-------------S--------------S---------------------------------S----
---------------S-------------------------------------------------S--------------
-------------S--------S-----S---S-------------------------S---------------------
S-------------------------------S----------------------------------------------S
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_202
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------TGGAAGTAGGTGCGGACGAA--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------
>reverse_2255
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------ACCAGCTTGGAGCATGTTGT----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-------------------------------------------------------------
