Multiple sequence alignment - TraesCS2A01G263300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G263300 chr2A 100.000 3670 0 0 1 3670 417748092 417744423 0.000000e+00 6778.0
1 TraesCS2A01G263300 chr2B 92.263 1719 92 19 2 1707 384747282 384748972 0.000000e+00 2399.0
2 TraesCS2A01G263300 chr2B 90.993 1188 56 22 2495 3639 384749508 384750687 0.000000e+00 1554.0
3 TraesCS2A01G263300 chr2B 90.173 519 33 6 1861 2361 384748969 384749487 0.000000e+00 660.0
4 TraesCS2A01G263300 chr2B 94.410 161 8 1 3239 3399 780209344 780209503 2.830000e-61 246.0
5 TraesCS2A01G263300 chr2B 84.906 265 14 8 3432 3670 780213470 780213734 1.020000e-60 244.0
6 TraesCS2A01G263300 chr2B 89.535 86 9 0 3006 3091 780209184 780209269 3.870000e-20 110.0
7 TraesCS2A01G263300 chr2B 93.939 66 4 0 2382 2447 226693258 226693323 2.330000e-17 100.0
8 TraesCS2A01G263300 chr2D 94.031 1156 45 14 556 1707 317263480 317264615 0.000000e+00 1731.0
9 TraesCS2A01G263300 chr2D 93.285 685 26 13 2495 3161 317265158 317265840 0.000000e+00 992.0
10 TraesCS2A01G263300 chr2D 90.659 546 28 6 3147 3670 317265858 317266402 0.000000e+00 704.0
11 TraesCS2A01G263300 chr2D 89.394 528 29 7 1860 2361 317264611 317265137 1.110000e-179 640.0
12 TraesCS2A01G263300 chr2D 92.481 399 28 2 1 398 317262699 317263096 1.480000e-158 569.0
13 TraesCS2A01G263300 chr2D 95.679 162 4 1 1706 1864 362930969 362930808 1.310000e-64 257.0
14 TraesCS2A01G263300 chr2D 95.122 164 5 1 1704 1864 87407527 87407364 4.700000e-64 255.0
15 TraesCS2A01G263300 chr5D 86.969 706 52 18 3003 3670 465699981 465700684 0.000000e+00 758.0
16 TraesCS2A01G263300 chr5D 95.152 165 5 1 1703 1864 53583074 53583238 1.310000e-64 257.0
17 TraesCS2A01G263300 chr5D 94.286 70 2 1 2386 2453 413285647 413285578 5.010000e-19 106.0
18 TraesCS2A01G263300 chr5D 85.870 92 6 5 2358 2443 332041696 332041786 1.400000e-14 91.6
19 TraesCS2A01G263300 chr7B 87.355 688 49 18 3020 3670 662529636 662528950 0.000000e+00 754.0
20 TraesCS2A01G263300 chr7B 93.151 73 4 1 2386 2458 123782927 123782856 5.010000e-19 106.0
21 TraesCS2A01G263300 chr1B 86.610 702 52 27 3003 3670 289039916 289040609 0.000000e+00 737.0
22 TraesCS2A01G263300 chr1B 92.877 351 24 1 3088 3438 553655010 553654661 3.270000e-140 508.0
23 TraesCS2A01G263300 chr1B 94.611 167 6 1 1706 1869 623195844 623195678 4.700000e-64 255.0
24 TraesCS2A01G263300 chr4B 78.849 591 105 10 3003 3577 285622829 285623415 7.440000e-102 381.0
25 TraesCS2A01G263300 chr3B 78.024 587 109 11 3007 3577 68951443 68952025 5.830000e-93 351.0
26 TraesCS2A01G263300 chr3B 92.683 41 3 0 642 682 309617068 309617028 3.960000e-05 60.2
27 TraesCS2A01G263300 chr5B 81.050 438 79 4 3003 3438 537810846 537810411 2.710000e-91 346.0
28 TraesCS2A01G263300 chr6D 75.779 706 112 29 3006 3670 108009758 108009071 5.960000e-78 302.0
29 TraesCS2A01G263300 chr6D 95.652 161 5 1 1706 1864 21052131 21051971 1.310000e-64 257.0
30 TraesCS2A01G263300 chr6D 94.083 169 7 1 1699 1864 426106723 426106891 1.690000e-63 254.0
31 TraesCS2A01G263300 chr4A 95.679 162 4 1 1706 1864 517406632 517406471 1.310000e-64 257.0
32 TraesCS2A01G263300 chr4A 95.455 66 3 0 2382 2447 29077465 29077530 5.010000e-19 106.0
33 TraesCS2A01G263300 chr3D 94.083 169 7 1 1699 1864 537154695 537154863 1.690000e-63 254.0
34 TraesCS2A01G263300 chr3D 97.143 35 1 0 642 676 253517522 253517556 3.960000e-05 60.2
35 TraesCS2A01G263300 chr1D 95.062 162 5 1 1706 1864 338937212 338937373 6.080000e-63 252.0
36 TraesCS2A01G263300 chr3A 94.286 70 4 0 2382 2451 621323804 621323735 1.390000e-19 108.0
37 TraesCS2A01G263300 chr3A 95.455 66 3 0 2383 2448 599863738 599863803 5.010000e-19 106.0
38 TraesCS2A01G263300 chr3A 92.857 70 5 0 2382 2451 686191279 686191210 6.480000e-18 102.0
39 TraesCS2A01G263300 chr4D 95.455 66 3 0 2382 2447 439780418 439780483 5.010000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G263300 chr2A 417744423 417748092 3669 True 6778.000000 6778 100.000 1 3670 1 chr2A.!!$R1 3669
1 TraesCS2A01G263300 chr2B 384747282 384750687 3405 False 1537.666667 2399 91.143 2 3639 3 chr2B.!!$F2 3637
2 TraesCS2A01G263300 chr2D 317262699 317266402 3703 False 927.200000 1731 91.970 1 3670 5 chr2D.!!$F1 3669
3 TraesCS2A01G263300 chr5D 465699981 465700684 703 False 758.000000 758 86.969 3003 3670 1 chr5D.!!$F3 667
4 TraesCS2A01G263300 chr7B 662528950 662529636 686 True 754.000000 754 87.355 3020 3670 1 chr7B.!!$R2 650
5 TraesCS2A01G263300 chr1B 289039916 289040609 693 False 737.000000 737 86.610 3003 3670 1 chr1B.!!$F1 667
6 TraesCS2A01G263300 chr4B 285622829 285623415 586 False 381.000000 381 78.849 3003 3577 1 chr4B.!!$F1 574
7 TraesCS2A01G263300 chr3B 68951443 68952025 582 False 351.000000 351 78.024 3007 3577 1 chr3B.!!$F1 570
8 TraesCS2A01G263300 chr6D 108009071 108009758 687 True 302.000000 302 75.779 3006 3670 1 chr6D.!!$R2 664

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
559 562 0.179116 CCTCTCATCTCTGCCACGTG 60.179 60.0 9.08 9.08 0.00 4.49 F
1140 1382 0.033228 CCTGATCTGATCCTGTCGGC 59.967 60.0 14.71 0.00 32.95 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1993 2240 0.264955 TCCCCCTGGATCCTAGTGAC 59.735 60.0 14.23 0.0 35.03 3.67 R
2698 2974 0.107654 AGGTGGATTACGGCAGCTTC 60.108 55.0 0.00 0.0 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 5.396436 CCCCAAAGTAGGTCGATAAAGTGAT 60.396 44.000 0.00 0.00 0.00 3.06
42 43 1.937223 GATGACACAACACGGTTGACA 59.063 47.619 19.38 15.65 0.00 3.58
44 45 3.180891 TGACACAACACGGTTGACATA 57.819 42.857 19.38 4.87 0.00 2.29
62 63 0.963856 TAGCGAGTTGAAGCCTCCGA 60.964 55.000 0.00 0.00 0.00 4.55
63 64 2.095252 GCGAGTTGAAGCCTCCGAC 61.095 63.158 0.00 0.00 0.00 4.79
64 65 1.587054 CGAGTTGAAGCCTCCGACT 59.413 57.895 0.00 0.00 0.00 4.18
105 106 1.671054 CGGCAAGGTGACGTTGGAT 60.671 57.895 18.22 0.00 45.41 3.41
120 121 3.232662 GTTGGATCCCCTAGAGTAGGTC 58.767 54.545 9.90 0.00 44.73 3.85
132 133 3.687125 AGAGTAGGTCGATGAAGTGACA 58.313 45.455 0.00 0.00 36.83 3.58
302 305 1.359848 GCAAATCGATGAGGTGACGT 58.640 50.000 0.00 0.00 0.00 4.34
304 307 1.583856 CAAATCGATGAGGTGACGTCG 59.416 52.381 11.62 0.00 46.45 5.12
310 313 3.063084 GAGGTGACGTCGGAGCCT 61.063 66.667 16.90 16.90 0.00 4.58
355 358 1.373435 GTTGGGATGGTGGACGTCA 59.627 57.895 18.91 0.27 36.81 4.35
378 381 1.822581 TGATATGAAGTGACGACGCG 58.177 50.000 3.53 3.53 0.00 6.01
379 382 1.399089 TGATATGAAGTGACGACGCGA 59.601 47.619 15.93 0.00 0.00 5.87
427 430 1.729881 GGGATCGATGTTGGCTTGC 59.270 57.895 0.54 0.00 0.00 4.01
440 443 1.136147 GCTTGCTGAAGTGATGGCG 59.864 57.895 0.00 0.00 0.00 5.69
479 482 2.063015 AACCTGTGCAATCCGTGGGA 62.063 55.000 0.00 0.00 35.55 4.37
505 508 2.540910 TGGTCTCCTCCCCTCCCT 60.541 66.667 0.00 0.00 0.00 4.20
514 517 2.367377 CCCCTCCCTCCTCATGCA 60.367 66.667 0.00 0.00 0.00 3.96
519 522 1.541118 TCCCTCCTCATGCACCCAA 60.541 57.895 0.00 0.00 0.00 4.12
542 545 4.003788 CGAGGACGGCACAACCCT 62.004 66.667 0.00 0.00 35.72 4.34
557 560 1.326213 ACCCTCTCATCTCTGCCACG 61.326 60.000 0.00 0.00 0.00 4.94
558 561 1.326213 CCCTCTCATCTCTGCCACGT 61.326 60.000 0.00 0.00 0.00 4.49
559 562 0.179116 CCTCTCATCTCTGCCACGTG 60.179 60.000 9.08 9.08 0.00 4.49
566 795 1.227527 CTCTGCCACGTGACACCAA 60.228 57.895 19.30 0.00 0.00 3.67
601 830 1.005340 GGAGCTGCGAGATTCTTGTG 58.995 55.000 0.00 0.00 0.00 3.33
616 845 3.057019 TCTTGTGAGAAATCAACGGTCG 58.943 45.455 0.00 0.00 0.00 4.79
650 879 7.938140 TTGTTTCCAGATCTAAAAATCCGAT 57.062 32.000 0.00 0.00 0.00 4.18
678 907 9.158233 TCAGATTTTTATCGATTCCGTTAAAGT 57.842 29.630 1.71 0.00 39.55 2.66
747 977 1.468520 CCGGTTCATAGCACCACTTTG 59.531 52.381 0.00 0.00 33.36 2.77
748 978 2.151202 CGGTTCATAGCACCACTTTGT 58.849 47.619 0.00 0.00 33.36 2.83
749 979 2.552315 CGGTTCATAGCACCACTTTGTT 59.448 45.455 0.00 0.00 33.36 2.83
750 980 3.749088 CGGTTCATAGCACCACTTTGTTA 59.251 43.478 0.00 0.00 33.36 2.41
751 981 4.214545 CGGTTCATAGCACCACTTTGTTAA 59.785 41.667 0.00 0.00 33.36 2.01
965 1195 0.591170 TTTCCGCCGAAGCAGAAAAG 59.409 50.000 0.00 0.00 41.33 2.27
966 1196 1.852067 TTCCGCCGAAGCAGAAAAGC 61.852 55.000 0.00 0.00 39.83 3.51
967 1197 2.616330 CCGCCGAAGCAGAAAAGCA 61.616 57.895 0.00 0.00 39.83 3.91
968 1198 1.503542 CGCCGAAGCAGAAAAGCAT 59.496 52.632 0.00 0.00 39.83 3.79
969 1199 0.522076 CGCCGAAGCAGAAAAGCATC 60.522 55.000 0.00 0.00 39.83 3.91
972 1202 2.150797 CGAAGCAGAAAAGCATCGTC 57.849 50.000 5.54 0.00 46.77 4.20
973 1203 1.728971 CGAAGCAGAAAAGCATCGTCT 59.271 47.619 5.54 0.00 46.77 4.18
974 1204 2.222685 CGAAGCAGAAAAGCATCGTCTC 60.223 50.000 5.54 0.00 46.77 3.36
997 1237 2.667448 CGTCTCGTCGAGGAATCAACAA 60.667 50.000 21.63 0.00 0.00 2.83
1008 1248 0.541764 AATCAACAACCATGGGCGGT 60.542 50.000 18.09 8.07 42.71 5.68
1103 1345 0.253327 AATCCCCTTCTCTTGGTCGC 59.747 55.000 0.00 0.00 0.00 5.19
1112 1354 1.478510 TCTCTTGGTCGCCAGATCTTC 59.521 52.381 0.00 0.00 33.81 2.87
1140 1382 0.033228 CCTGATCTGATCCTGTCGGC 59.967 60.000 14.71 0.00 32.95 5.54
1151 1393 0.512952 CCTGTCGGCGTTTTCTCTTG 59.487 55.000 6.85 0.00 0.00 3.02
1226 1469 3.269347 CGCCGTTAATCCCGCCTG 61.269 66.667 0.00 0.00 0.00 4.85
1345 1588 4.838152 CTGGGACGGGATGCGTGG 62.838 72.222 0.00 0.00 0.00 4.94
1383 1626 4.308265 GACGATTGGTAGCCTATTTCTCC 58.692 47.826 0.00 0.00 0.00 3.71
1404 1647 1.015609 TAGGACTCTGGGTGGATGGA 58.984 55.000 0.00 0.00 0.00 3.41
1446 1689 3.380479 TTATCGGTAGGATTTGGAGCG 57.620 47.619 0.00 0.00 36.55 5.03
1480 1725 2.520979 CGCCTAGAGAAACGAAGTGAG 58.479 52.381 0.00 0.00 45.00 3.51
1486 1731 4.592485 AGAGAAACGAAGTGAGTCATGT 57.408 40.909 0.00 0.00 45.00 3.21
1487 1732 5.707242 AGAGAAACGAAGTGAGTCATGTA 57.293 39.130 0.00 0.00 45.00 2.29
1488 1733 5.462405 AGAGAAACGAAGTGAGTCATGTAC 58.538 41.667 0.00 0.00 45.00 2.90
1489 1734 5.241949 AGAGAAACGAAGTGAGTCATGTACT 59.758 40.000 0.00 0.00 45.00 2.73
1589 1834 2.171840 GCTCCTTCGGGCATAGATCTA 58.828 52.381 4.57 4.57 34.44 1.98
1598 1844 3.775316 CGGGCATAGATCTAGGGGTATTT 59.225 47.826 15.73 0.00 0.00 1.40
1601 1847 5.339282 GGGCATAGATCTAGGGGTATTTTCC 60.339 48.000 15.73 5.84 0.00 3.13
1707 1953 4.446385 TGTGTGTCGCTGTTTGATAAGTAC 59.554 41.667 0.00 0.00 0.00 2.73
1708 1954 4.684703 GTGTGTCGCTGTTTGATAAGTACT 59.315 41.667 0.00 0.00 0.00 2.73
1709 1955 4.921515 TGTGTCGCTGTTTGATAAGTACTC 59.078 41.667 0.00 0.00 0.00 2.59
1710 1956 4.326548 GTGTCGCTGTTTGATAAGTACTCC 59.673 45.833 0.00 0.00 0.00 3.85
1711 1957 3.864003 GTCGCTGTTTGATAAGTACTCCC 59.136 47.826 0.00 0.00 0.00 4.30
1712 1958 3.767673 TCGCTGTTTGATAAGTACTCCCT 59.232 43.478 0.00 0.00 0.00 4.20
1713 1959 4.113354 CGCTGTTTGATAAGTACTCCCTC 58.887 47.826 0.00 0.00 0.00 4.30
1714 1960 4.443621 GCTGTTTGATAAGTACTCCCTCC 58.556 47.826 0.00 0.00 0.00 4.30
1715 1961 4.683832 CTGTTTGATAAGTACTCCCTCCG 58.316 47.826 0.00 0.00 0.00 4.63
1716 1962 4.091549 TGTTTGATAAGTACTCCCTCCGT 58.908 43.478 0.00 0.00 0.00 4.69
1717 1963 4.529377 TGTTTGATAAGTACTCCCTCCGTT 59.471 41.667 0.00 0.00 0.00 4.44
1718 1964 4.996788 TTGATAAGTACTCCCTCCGTTC 57.003 45.455 0.00 0.00 0.00 3.95
1719 1965 3.294214 TGATAAGTACTCCCTCCGTTCC 58.706 50.000 0.00 0.00 0.00 3.62
1720 1966 3.053095 TGATAAGTACTCCCTCCGTTCCT 60.053 47.826 0.00 0.00 0.00 3.36
1721 1967 4.166725 TGATAAGTACTCCCTCCGTTCCTA 59.833 45.833 0.00 0.00 0.00 2.94
1722 1968 3.463048 AAGTACTCCCTCCGTTCCTAA 57.537 47.619 0.00 0.00 0.00 2.69
1723 1969 3.463048 AGTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
1724 1970 3.991683 AGTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
1725 1971 5.134725 AGTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
1726 1972 5.713807 AGTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
1727 1973 6.856757 AGTACTCCCTCCGTTCCTAAATATA 58.143 40.000 0.00 0.00 0.00 0.86
1728 1974 7.300658 AGTACTCCCTCCGTTCCTAAATATAA 58.699 38.462 0.00 0.00 0.00 0.98
1729 1975 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
1730 1976 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
1731 1977 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
1732 1978 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
1733 1979 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
1734 1980 8.006564 TCCCTCCGTTCCTAAATATAAGTCTTA 58.993 37.037 0.00 0.00 0.00 2.10
1735 1981 8.305317 CCCTCCGTTCCTAAATATAAGTCTTAG 58.695 40.741 0.00 0.00 0.00 2.18
1736 1982 9.075678 CCTCCGTTCCTAAATATAAGTCTTAGA 57.924 37.037 0.00 0.00 0.00 2.10
1738 1984 9.857656 TCCGTTCCTAAATATAAGTCTTAGAGA 57.142 33.333 0.00 0.00 0.00 3.10
1752 1998 7.784470 AGTCTTAGAGATTCCACTACAAACT 57.216 36.000 0.00 0.00 0.00 2.66
1753 1999 8.880991 AGTCTTAGAGATTCCACTACAAACTA 57.119 34.615 0.00 0.00 0.00 2.24
1754 2000 8.741841 AGTCTTAGAGATTCCACTACAAACTAC 58.258 37.037 0.00 0.00 0.00 2.73
1755 2001 8.521176 GTCTTAGAGATTCCACTACAAACTACA 58.479 37.037 0.00 0.00 0.00 2.74
1756 2002 9.256228 TCTTAGAGATTCCACTACAAACTACAT 57.744 33.333 0.00 0.00 0.00 2.29
1759 2005 7.481642 AGAGATTCCACTACAAACTACATACG 58.518 38.462 0.00 0.00 0.00 3.06
1760 2006 6.570692 AGATTCCACTACAAACTACATACGG 58.429 40.000 0.00 0.00 0.00 4.02
1761 2007 5.981088 TTCCACTACAAACTACATACGGA 57.019 39.130 0.00 0.00 0.00 4.69
1762 2008 6.534475 TTCCACTACAAACTACATACGGAT 57.466 37.500 0.00 0.00 0.00 4.18
1763 2009 5.898174 TCCACTACAAACTACATACGGATG 58.102 41.667 5.94 5.94 39.16 3.51
1765 2011 6.602803 TCCACTACAAACTACATACGGATGTA 59.397 38.462 19.32 19.32 44.77 2.29
1766 2012 7.286087 TCCACTACAAACTACATACGGATGTAT 59.714 37.037 20.64 8.38 45.42 2.29
1767 2013 8.570488 CCACTACAAACTACATACGGATGTATA 58.430 37.037 20.64 9.08 45.42 1.47
1805 2051 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
1806 2052 6.471146 AGTGTAGATTCACTCATTTTGCTCT 58.529 36.000 0.00 0.00 44.07 4.09
1807 2053 6.370994 AGTGTAGATTCACTCATTTTGCTCTG 59.629 38.462 0.00 0.00 44.07 3.35
1808 2054 6.148480 GTGTAGATTCACTCATTTTGCTCTGT 59.852 38.462 0.00 0.00 35.68 3.41
1809 2055 7.331934 GTGTAGATTCACTCATTTTGCTCTGTA 59.668 37.037 0.00 0.00 35.68 2.74
1810 2056 8.043113 TGTAGATTCACTCATTTTGCTCTGTAT 58.957 33.333 0.00 0.00 0.00 2.29
1811 2057 7.317842 AGATTCACTCATTTTGCTCTGTATG 57.682 36.000 0.00 0.00 0.00 2.39
1812 2058 6.883217 AGATTCACTCATTTTGCTCTGTATGT 59.117 34.615 0.00 0.00 0.00 2.29
1813 2059 8.043113 AGATTCACTCATTTTGCTCTGTATGTA 58.957 33.333 0.00 0.00 0.00 2.29
1814 2060 7.601073 TTCACTCATTTTGCTCTGTATGTAG 57.399 36.000 0.00 0.00 0.00 2.74
1815 2061 6.701340 TCACTCATTTTGCTCTGTATGTAGT 58.299 36.000 0.00 0.00 0.00 2.73
1816 2062 6.813649 TCACTCATTTTGCTCTGTATGTAGTC 59.186 38.462 0.00 0.00 0.00 2.59
1817 2063 6.036517 CACTCATTTTGCTCTGTATGTAGTCC 59.963 42.308 0.00 0.00 0.00 3.85
1818 2064 6.048732 TCATTTTGCTCTGTATGTAGTCCA 57.951 37.500 0.00 0.00 0.00 4.02
1819 2065 6.653020 TCATTTTGCTCTGTATGTAGTCCAT 58.347 36.000 0.00 0.00 37.58 3.41
1820 2066 7.791029 TCATTTTGCTCTGTATGTAGTCCATA 58.209 34.615 0.00 0.00 34.86 2.74
1821 2067 7.928167 TCATTTTGCTCTGTATGTAGTCCATAG 59.072 37.037 0.00 0.00 36.71 2.23
1822 2068 6.791867 TTTGCTCTGTATGTAGTCCATAGT 57.208 37.500 0.00 0.00 36.71 2.12
1823 2069 5.774498 TGCTCTGTATGTAGTCCATAGTG 57.226 43.478 0.00 0.00 36.71 2.74
1824 2070 4.584743 TGCTCTGTATGTAGTCCATAGTGG 59.415 45.833 0.00 0.00 36.71 4.00
1825 2071 4.827835 GCTCTGTATGTAGTCCATAGTGGA 59.172 45.833 0.00 0.00 45.98 4.02
1839 2085 6.357367 TCCATAGTGGAATCTCTAAAAAGGC 58.643 40.000 0.00 0.00 45.00 4.35
1840 2086 6.158695 TCCATAGTGGAATCTCTAAAAAGGCT 59.841 38.462 0.00 0.00 45.00 4.58
1841 2087 6.830838 CCATAGTGGAATCTCTAAAAAGGCTT 59.169 38.462 0.00 0.00 40.96 4.35
1842 2088 7.993183 CCATAGTGGAATCTCTAAAAAGGCTTA 59.007 37.037 0.00 0.00 40.96 3.09
1843 2089 9.566432 CATAGTGGAATCTCTAAAAAGGCTTAT 57.434 33.333 0.00 0.00 0.00 1.73
1858 2104 7.803279 AAAGGCTTATATTTAGAAACGGAGG 57.197 36.000 0.00 0.00 0.00 4.30
1859 2105 5.866207 AGGCTTATATTTAGAAACGGAGGG 58.134 41.667 0.00 0.00 0.00 4.30
1860 2106 5.605488 AGGCTTATATTTAGAAACGGAGGGA 59.395 40.000 0.00 0.00 0.00 4.20
1861 2107 5.932883 GGCTTATATTTAGAAACGGAGGGAG 59.067 44.000 0.00 0.00 0.00 4.30
1862 2108 6.464039 GGCTTATATTTAGAAACGGAGGGAGT 60.464 42.308 0.00 0.00 0.00 3.85
1863 2109 7.256083 GGCTTATATTTAGAAACGGAGGGAGTA 60.256 40.741 0.00 0.00 0.00 2.59
1935 2182 0.609131 ATGTCCGAACCAGCTTTGGG 60.609 55.000 0.00 0.00 34.33 4.12
1972 2219 4.829492 AGGCTATGCTTGTTTCTGAAACTT 59.171 37.500 27.75 13.55 41.90 2.66
1987 2234 5.071788 TCTGAAACTTGTTCTGGATGGTACT 59.928 40.000 0.00 0.00 0.00 2.73
1990 2237 4.473477 ACTTGTTCTGGATGGTACTAGC 57.527 45.455 0.00 0.00 0.00 3.42
1993 2240 5.361285 ACTTGTTCTGGATGGTACTAGCTAG 59.639 44.000 19.44 19.44 0.00 3.42
1997 2244 4.462133 TCTGGATGGTACTAGCTAGTCAC 58.538 47.826 29.28 22.00 37.73 3.67
2007 2254 4.980573 ACTAGCTAGTCACTAGGATCCAG 58.019 47.826 20.95 11.76 41.22 3.86
2012 2259 4.796700 CTAGTCACTAGGATCCAGGGGGA 61.797 56.522 15.82 7.00 37.74 4.81
2032 2281 0.325765 AGGGGTAGCTGGAAGACTCC 60.326 60.000 0.00 0.00 42.81 3.85
2164 2434 2.223572 CCCAACTGCTCACAACTTGAAC 60.224 50.000 0.00 0.00 32.21 3.18
2182 2452 9.826574 AACTTGAACTAGTAACAAAGTGATGTA 57.173 29.630 13.70 0.00 32.02 2.29
2185 2455 6.872020 TGAACTAGTAACAAAGTGATGTAGCC 59.128 38.462 0.00 0.00 32.02 3.93
2235 2507 9.448438 TGCAGTGTATAATTAGTCTTGACAAAT 57.552 29.630 3.49 0.00 0.00 2.32
2265 2538 3.402110 CAGTCATGTTGCCTGTGAGTTA 58.598 45.455 0.00 0.00 0.00 2.24
2271 2544 4.829064 TGTTGCCTGTGAGTTAATCAAC 57.171 40.909 0.00 0.00 40.43 3.18
2287 2561 5.796424 AATCAACTTCTTGTCTGCCAATT 57.204 34.783 0.00 0.00 31.20 2.32
2316 2590 6.430925 GTGCACCATATTGGATAGCTGAAATA 59.569 38.462 5.22 0.00 40.96 1.40
2317 2591 7.121759 GTGCACCATATTGGATAGCTGAAATAT 59.878 37.037 5.22 0.00 40.96 1.28
2321 2595 9.812347 ACCATATTGGATAGCTGAAATATTTCA 57.188 29.630 25.44 25.44 41.53 2.69
2347 2621 2.212812 TTGCCTTGCACATCATACCA 57.787 45.000 0.00 0.00 38.71 3.25
2361 2635 7.470702 GCACATCATACCAGTCTAGTGAATACT 60.471 40.741 0.00 0.00 40.99 2.12
2362 2636 8.079203 CACATCATACCAGTCTAGTGAATACTC 58.921 40.741 0.00 0.00 38.36 2.59
2363 2637 7.231722 ACATCATACCAGTCTAGTGAATACTCC 59.768 40.741 0.00 0.00 38.36 3.85
2364 2638 6.069331 TCATACCAGTCTAGTGAATACTCCC 58.931 44.000 0.00 0.00 38.36 4.30
2365 2639 4.611564 ACCAGTCTAGTGAATACTCCCT 57.388 45.455 0.00 0.00 38.36 4.20
2366 2640 4.538738 ACCAGTCTAGTGAATACTCCCTC 58.461 47.826 0.00 0.00 38.36 4.30
2367 2641 4.230964 ACCAGTCTAGTGAATACTCCCTCT 59.769 45.833 0.00 0.00 38.36 3.69
2368 2642 4.582656 CCAGTCTAGTGAATACTCCCTCTG 59.417 50.000 0.00 0.00 38.36 3.35
2369 2643 5.197451 CAGTCTAGTGAATACTCCCTCTGT 58.803 45.833 0.00 0.00 38.36 3.41
2370 2644 5.298276 CAGTCTAGTGAATACTCCCTCTGTC 59.702 48.000 0.00 0.00 38.36 3.51
2371 2645 4.581409 GTCTAGTGAATACTCCCTCTGTCC 59.419 50.000 0.00 0.00 38.36 4.02
2372 2646 2.753247 AGTGAATACTCCCTCTGTCCC 58.247 52.381 0.00 0.00 28.79 4.46
2373 2647 1.409427 GTGAATACTCCCTCTGTCCCG 59.591 57.143 0.00 0.00 0.00 5.14
2374 2648 1.286849 TGAATACTCCCTCTGTCCCGA 59.713 52.381 0.00 0.00 0.00 5.14
2375 2649 2.291996 TGAATACTCCCTCTGTCCCGAA 60.292 50.000 0.00 0.00 0.00 4.30
2376 2650 2.777459 ATACTCCCTCTGTCCCGAAT 57.223 50.000 0.00 0.00 0.00 3.34
2377 2651 2.544844 TACTCCCTCTGTCCCGAATT 57.455 50.000 0.00 0.00 0.00 2.17
2378 2652 2.544844 ACTCCCTCTGTCCCGAATTA 57.455 50.000 0.00 0.00 0.00 1.40
2379 2653 2.829023 ACTCCCTCTGTCCCGAATTAA 58.171 47.619 0.00 0.00 0.00 1.40
2380 2654 3.178865 ACTCCCTCTGTCCCGAATTAAA 58.821 45.455 0.00 0.00 0.00 1.52
2381 2655 3.197983 ACTCCCTCTGTCCCGAATTAAAG 59.802 47.826 0.00 0.00 0.00 1.85
2382 2656 3.178865 TCCCTCTGTCCCGAATTAAAGT 58.821 45.455 0.00 0.00 0.00 2.66
2383 2657 3.585732 TCCCTCTGTCCCGAATTAAAGTT 59.414 43.478 0.00 0.00 0.00 2.66
2384 2658 3.689649 CCCTCTGTCCCGAATTAAAGTTG 59.310 47.826 0.00 0.00 0.00 3.16
2385 2659 4.324267 CCTCTGTCCCGAATTAAAGTTGT 58.676 43.478 0.00 0.00 0.00 3.32
2386 2660 5.484715 CCTCTGTCCCGAATTAAAGTTGTA 58.515 41.667 0.00 0.00 0.00 2.41
2387 2661 5.581085 CCTCTGTCCCGAATTAAAGTTGTAG 59.419 44.000 0.00 0.00 0.00 2.74
2388 2662 6.105397 TCTGTCCCGAATTAAAGTTGTAGT 57.895 37.500 0.00 0.00 0.00 2.73
2389 2663 5.929992 TCTGTCCCGAATTAAAGTTGTAGTG 59.070 40.000 0.00 0.00 0.00 2.74
2390 2664 5.613329 TGTCCCGAATTAAAGTTGTAGTGT 58.387 37.500 0.00 0.00 0.00 3.55
2391 2665 6.056884 TGTCCCGAATTAAAGTTGTAGTGTT 58.943 36.000 0.00 0.00 0.00 3.32
2392 2666 7.215789 TGTCCCGAATTAAAGTTGTAGTGTTA 58.784 34.615 0.00 0.00 0.00 2.41
2393 2667 7.385752 TGTCCCGAATTAAAGTTGTAGTGTTAG 59.614 37.037 0.00 0.00 0.00 2.34
2394 2668 7.599998 GTCCCGAATTAAAGTTGTAGTGTTAGA 59.400 37.037 0.00 0.00 0.00 2.10
2395 2669 8.316214 TCCCGAATTAAAGTTGTAGTGTTAGAT 58.684 33.333 0.00 0.00 0.00 1.98
2396 2670 9.590451 CCCGAATTAAAGTTGTAGTGTTAGATA 57.410 33.333 0.00 0.00 0.00 1.98
2402 2676 9.577110 TTAAAGTTGTAGTGTTAGATACATCCG 57.423 33.333 0.00 0.00 39.39 4.18
2403 2677 6.770746 AGTTGTAGTGTTAGATACATCCGT 57.229 37.500 0.00 0.00 39.39 4.69
2404 2678 7.870509 AGTTGTAGTGTTAGATACATCCGTA 57.129 36.000 0.00 0.00 39.39 4.02
2405 2679 8.461249 AGTTGTAGTGTTAGATACATCCGTAT 57.539 34.615 0.00 0.00 41.16 3.06
2406 2680 8.910944 AGTTGTAGTGTTAGATACATCCGTATT 58.089 33.333 0.00 0.00 38.48 1.89
2407 2681 9.525409 GTTGTAGTGTTAGATACATCCGTATTT 57.475 33.333 0.00 0.00 38.48 1.40
2412 2686 9.128404 AGTGTTAGATACATCCGTATTTAGACA 57.872 33.333 0.00 0.00 38.48 3.41
2413 2687 9.740239 GTGTTAGATACATCCGTATTTAGACAA 57.260 33.333 0.00 0.00 38.48 3.18
2422 2696 9.530633 ACATCCGTATTTAGACAAATCTAAGAC 57.469 33.333 0.00 0.83 45.93 3.01
2423 2697 9.529325 CATCCGTATTTAGACAAATCTAAGACA 57.471 33.333 9.81 0.00 45.93 3.41
2425 2699 9.582431 TCCGTATTTAGACAAATCTAAGACAAG 57.418 33.333 9.81 3.88 45.93 3.16
2426 2700 9.367444 CCGTATTTAGACAAATCTAAGACAAGT 57.633 33.333 9.81 0.00 45.93 3.16
2434 2708 9.014297 AGACAAATCTAAGACAAGTAATTTGGG 57.986 33.333 9.60 0.00 38.04 4.12
2435 2709 8.934023 ACAAATCTAAGACAAGTAATTTGGGA 57.066 30.769 9.60 0.00 41.25 4.37
2436 2710 9.533831 ACAAATCTAAGACAAGTAATTTGGGAT 57.466 29.630 9.60 0.00 41.25 3.85
2437 2711 9.793252 CAAATCTAAGACAAGTAATTTGGGATG 57.207 33.333 0.00 0.00 41.25 3.51
2438 2712 8.525290 AATCTAAGACAAGTAATTTGGGATGG 57.475 34.615 0.00 0.00 41.25 3.51
2439 2713 7.265599 TCTAAGACAAGTAATTTGGGATGGA 57.734 36.000 0.00 0.00 41.25 3.41
2440 2714 7.338710 TCTAAGACAAGTAATTTGGGATGGAG 58.661 38.462 0.00 0.00 41.25 3.86
2441 2715 4.860022 AGACAAGTAATTTGGGATGGAGG 58.140 43.478 0.00 0.00 41.25 4.30
2442 2716 4.292306 AGACAAGTAATTTGGGATGGAGGT 59.708 41.667 0.00 0.00 41.25 3.85
2443 2717 5.491078 AGACAAGTAATTTGGGATGGAGGTA 59.509 40.000 0.00 0.00 41.25 3.08
2444 2718 6.011981 AGACAAGTAATTTGGGATGGAGGTAA 60.012 38.462 0.00 0.00 41.25 2.85
2445 2719 6.741724 ACAAGTAATTTGGGATGGAGGTAAT 58.258 36.000 0.00 0.00 41.25 1.89
2446 2720 7.878495 ACAAGTAATTTGGGATGGAGGTAATA 58.122 34.615 0.00 0.00 41.25 0.98
2447 2721 8.511126 ACAAGTAATTTGGGATGGAGGTAATAT 58.489 33.333 0.00 0.00 41.25 1.28
2481 2755 9.623350 GTTACCGTAGATATCTTGTAATCTTCC 57.377 37.037 11.25 2.15 34.36 3.46
2482 2756 6.910995 ACCGTAGATATCTTGTAATCTTCCG 58.089 40.000 11.25 0.00 34.36 4.30
2483 2757 5.800941 CCGTAGATATCTTGTAATCTTCCGC 59.199 44.000 11.25 0.00 34.36 5.54
2484 2758 6.379386 CGTAGATATCTTGTAATCTTCCGCA 58.621 40.000 11.25 0.00 34.36 5.69
2485 2759 7.030165 CGTAGATATCTTGTAATCTTCCGCAT 58.970 38.462 11.25 0.00 34.36 4.73
2486 2760 7.542477 CGTAGATATCTTGTAATCTTCCGCATT 59.458 37.037 11.25 0.00 34.36 3.56
2487 2761 9.209175 GTAGATATCTTGTAATCTTCCGCATTT 57.791 33.333 11.25 0.00 34.36 2.32
2488 2762 8.316640 AGATATCTTGTAATCTTCCGCATTTC 57.683 34.615 0.00 0.00 0.00 2.17
2489 2763 8.153550 AGATATCTTGTAATCTTCCGCATTTCT 58.846 33.333 0.00 0.00 0.00 2.52
2490 2764 5.801350 TCTTGTAATCTTCCGCATTTCTG 57.199 39.130 0.00 0.00 0.00 3.02
2491 2765 4.094887 TCTTGTAATCTTCCGCATTTCTGC 59.905 41.667 0.00 0.00 45.31 4.26
2492 2766 2.682856 TGTAATCTTCCGCATTTCTGCC 59.317 45.455 0.00 0.00 46.07 4.85
2493 2767 1.838112 AATCTTCCGCATTTCTGCCA 58.162 45.000 0.00 0.00 46.07 4.92
2518 2794 6.795399 AGAAACATTATTTCGTATTGCCTGG 58.205 36.000 0.00 0.00 33.86 4.45
2665 2941 2.356667 CTTCCCCCACCTCAAGCC 59.643 66.667 0.00 0.00 0.00 4.35
2678 2954 0.829990 TCAAGCCGTGATATCTGCCA 59.170 50.000 3.98 0.00 0.00 4.92
2683 2959 1.195448 GCCGTGATATCTGCCAAATCG 59.805 52.381 3.98 0.00 0.00 3.34
2698 2974 1.961793 AATCGGACGGAGAGAGAGAG 58.038 55.000 0.00 0.00 0.00 3.20
2705 3000 0.381801 CGGAGAGAGAGAGAAGCTGC 59.618 60.000 0.00 0.00 0.00 5.25
2707 3002 0.381801 GAGAGAGAGAGAAGCTGCCG 59.618 60.000 0.00 0.00 0.00 5.69
2744 3039 1.452110 TCATGTTCCGCAATGACTGG 58.548 50.000 0.00 0.00 0.00 4.00
2984 3281 1.515521 GCACGGTTTACAGCCAAGCT 61.516 55.000 0.00 0.00 40.77 3.74
2985 3282 1.803334 CACGGTTTACAGCCAAGCTA 58.197 50.000 0.00 0.00 36.40 3.32
2996 3293 3.441572 ACAGCCAAGCTACATCAAACATC 59.558 43.478 0.00 0.00 36.40 3.06
3004 3303 5.491070 AGCTACATCAAACATCAGCAGTTA 58.509 37.500 0.00 0.00 0.00 2.24
3115 3415 1.565305 CAAGCCGAGTCTCATAGCAC 58.435 55.000 0.00 0.00 0.00 4.40
3124 3424 2.103373 GTCTCATAGCACCCACTCTCA 58.897 52.381 0.00 0.00 0.00 3.27
3153 3484 3.133003 ACTCCACTCGCAGCTAACATATT 59.867 43.478 0.00 0.00 0.00 1.28
3179 3510 2.477863 GCTTTATTGCAACCACGGCTAG 60.478 50.000 0.00 0.00 0.00 3.42
3181 3512 3.275617 TTATTGCAACCACGGCTAGAT 57.724 42.857 0.00 0.00 0.00 1.98
3193 3524 3.553511 CACGGCTAGATTGATTCACACTC 59.446 47.826 0.00 0.00 0.00 3.51
3213 3544 5.121298 CACTCACAACATTCAGACCTACATG 59.879 44.000 0.00 0.00 0.00 3.21
3216 3547 3.753272 ACAACATTCAGACCTACATGCAC 59.247 43.478 0.00 0.00 0.00 4.57
3236 3567 5.468746 TGCACCTTAAACTTCACATCTGTAC 59.531 40.000 0.00 0.00 0.00 2.90
3265 3596 6.054295 AGTGCCTAAAGCTGAAAGATCATAG 58.946 40.000 0.00 0.00 44.23 2.23
3294 3625 3.507622 ACTTGTTATTGCTTCCTTCAGCC 59.492 43.478 0.00 0.00 39.25 4.85
3398 3730 1.681166 GCATGCAATGGACTGGAGACT 60.681 52.381 14.21 0.00 46.86 3.24
3408 3740 3.259374 TGGACTGGAGACTTGATTCAGAC 59.741 47.826 0.00 0.00 0.00 3.51
3412 3744 4.172505 CTGGAGACTTGATTCAGACTTCG 58.827 47.826 0.00 0.00 0.00 3.79
3461 3805 0.606673 GTGAAACCCAGCCTCCTGAC 60.607 60.000 0.00 0.00 41.77 3.51
3577 3921 4.451900 TCCTTCTTTGTCTTGTCCTTCAC 58.548 43.478 0.00 0.00 0.00 3.18
3620 4000 4.652822 ACTTCTTGTGGGTTCATCCTTAC 58.347 43.478 0.00 0.00 36.25 2.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.639065 ACCGTGTTGTGTCATCACTTT 58.361 42.857 8.58 0.00 44.14 2.66
24 25 2.031258 ATGTCAACCGTGTTGTGTCA 57.969 45.000 13.95 12.19 0.00 3.58
42 43 0.103208 CGGAGGCTTCAACTCGCTAT 59.897 55.000 0.00 0.00 35.82 2.97
44 45 2.262915 CGGAGGCTTCAACTCGCT 59.737 61.111 0.00 0.00 35.82 4.93
62 63 1.671261 GCTTCGTCATGTCAGCTGAGT 60.671 52.381 18.89 6.15 0.00 3.41
63 64 0.997932 GCTTCGTCATGTCAGCTGAG 59.002 55.000 18.89 5.81 0.00 3.35
64 65 0.733909 CGCTTCGTCATGTCAGCTGA 60.734 55.000 13.74 13.74 0.00 4.26
92 93 1.229529 AGGGGATCCAACGTCACCT 60.230 57.895 15.23 5.83 44.66 4.00
120 121 3.063316 TGTGTTGTGTTGTCACTTCATCG 59.937 43.478 0.00 0.00 44.14 3.84
217 220 4.950475 TCATCACTTCATCGACCTACTCTT 59.050 41.667 0.00 0.00 0.00 2.85
279 282 0.107017 CACCTCATCGATTTGCCCCT 60.107 55.000 0.00 0.00 0.00 4.79
302 305 2.962569 CTGACGTGAAGGCTCCGA 59.037 61.111 0.00 0.00 0.00 4.55
304 307 2.435059 GGCTGACGTGAAGGCTCC 60.435 66.667 12.65 0.00 37.26 4.70
355 358 3.375642 CGTCGTCACTTCATATCATGCT 58.624 45.455 0.00 0.00 0.00 3.79
388 391 2.169179 GTCATGAATTTCGACTTGCGC 58.831 47.619 0.00 0.00 40.61 6.09
390 393 2.476185 CCCGTCATGAATTTCGACTTGC 60.476 50.000 0.00 0.00 0.00 4.01
393 396 3.458189 GATCCCGTCATGAATTTCGACT 58.542 45.455 0.00 0.00 0.00 4.18
398 401 3.808728 ACATCGATCCCGTCATGAATTT 58.191 40.909 0.00 0.00 37.05 1.82
399 402 3.475566 ACATCGATCCCGTCATGAATT 57.524 42.857 0.00 0.00 37.05 2.17
400 403 3.133691 CAACATCGATCCCGTCATGAAT 58.866 45.455 0.00 0.00 37.05 2.57
401 404 2.549926 CAACATCGATCCCGTCATGAA 58.450 47.619 0.00 0.00 37.05 2.57
402 405 1.202521 CCAACATCGATCCCGTCATGA 60.203 52.381 0.00 0.00 37.05 3.07
427 430 2.792290 CGTCGCGCCATCACTTCAG 61.792 63.158 0.00 0.00 0.00 3.02
460 463 1.603455 CCCACGGATTGCACAGGTT 60.603 57.895 0.00 0.00 0.00 3.50
505 508 2.359850 GCGTTGGGTGCATGAGGA 60.360 61.111 0.00 0.00 0.00 3.71
514 517 3.692406 GTCCTCGGAGCGTTGGGT 61.692 66.667 0.00 0.00 0.00 4.51
533 536 2.011046 GCAGAGATGAGAGGGTTGTGC 61.011 57.143 0.00 0.00 0.00 4.57
535 538 0.908198 GGCAGAGATGAGAGGGTTGT 59.092 55.000 0.00 0.00 0.00 3.32
541 544 0.813821 TCACGTGGCAGAGATGAGAG 59.186 55.000 17.00 0.00 0.00 3.20
542 545 0.528017 GTCACGTGGCAGAGATGAGA 59.472 55.000 16.80 0.00 0.00 3.27
566 795 1.689273 GCTCCACCGAGACCAATATCT 59.311 52.381 0.00 0.00 38.52 1.98
577 806 2.284798 GAATCTCGCAGCTCCACCGA 62.285 60.000 0.00 0.00 0.00 4.69
601 830 2.163815 TCTCCTCGACCGTTGATTTCTC 59.836 50.000 0.00 0.00 0.00 2.87
616 845 3.107642 TCTGGAAACAAACGTCTCCTC 57.892 47.619 0.00 0.00 42.06 3.71
650 879 6.978343 AACGGAATCGATAAAAATCTGACA 57.022 33.333 9.35 0.00 40.11 3.58
773 1003 2.202756 CCGTCCGTTAGCTGCTCC 60.203 66.667 4.91 0.00 0.00 4.70
965 1195 0.315544 GACGAGACGAGAGACGATGC 60.316 60.000 0.00 0.00 45.77 3.91
966 1196 0.043737 CGACGAGACGAGAGACGATG 60.044 60.000 0.00 0.00 45.77 3.84
967 1197 0.179142 TCGACGAGACGAGAGACGAT 60.179 55.000 0.00 0.00 45.77 3.73
968 1198 1.211190 TCGACGAGACGAGAGACGA 59.789 57.895 0.00 0.00 45.77 4.20
1008 1248 3.345808 GACTTCTGCGCGTTGCCA 61.346 61.111 8.43 0.00 45.60 4.92
1103 1345 3.517100 TCAGGAAGACCAAGAAGATCTGG 59.483 47.826 0.00 0.00 38.94 3.86
1112 1354 3.710677 AGGATCAGATCAGGAAGACCAAG 59.289 47.826 12.66 0.00 38.94 3.61
1140 1382 3.423645 GCGAAGGATCACAAGAGAAAACG 60.424 47.826 0.00 0.00 0.00 3.60
1151 1393 1.522580 GCTCCCTGCGAAGGATCAC 60.523 63.158 12.53 0.00 31.48 3.06
1345 1588 2.970324 TCGTTGCAACTGACGGGC 60.970 61.111 26.09 0.00 39.59 6.13
1383 1626 1.696336 CCATCCACCCAGAGTCCTATG 59.304 57.143 0.00 0.00 0.00 2.23
1423 1666 4.560716 CGCTCCAAATCCTACCGATAATCA 60.561 45.833 0.00 0.00 0.00 2.57
1446 1689 5.050490 TCTCTAGGCGCAATTGAGAAATAC 58.950 41.667 18.58 0.00 31.80 1.89
1480 1725 5.348997 GGCAGTCAAAAGTAGAGTACATGAC 59.651 44.000 0.00 0.00 38.34 3.06
1486 1731 4.021368 GTCCTGGCAGTCAAAAGTAGAGTA 60.021 45.833 14.43 0.00 0.00 2.59
1487 1732 2.972713 TCCTGGCAGTCAAAAGTAGAGT 59.027 45.455 14.43 0.00 0.00 3.24
1488 1733 3.007398 AGTCCTGGCAGTCAAAAGTAGAG 59.993 47.826 14.43 0.00 0.00 2.43
1489 1734 2.972713 AGTCCTGGCAGTCAAAAGTAGA 59.027 45.455 14.43 0.00 0.00 2.59
1490 1735 3.409026 AGTCCTGGCAGTCAAAAGTAG 57.591 47.619 14.43 0.00 0.00 2.57
1589 1834 3.306780 CGATATGCGAGGAAAATACCCCT 60.307 47.826 0.00 0.00 44.57 4.79
1707 1953 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
1708 1954 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
1709 1955 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
1710 1956 9.075678 TCTAAGACTTATATTTAGGAACGGAGG 57.924 37.037 0.00 0.00 0.00 4.30
1712 1958 9.857656 TCTCTAAGACTTATATTTAGGAACGGA 57.142 33.333 0.00 0.00 0.00 4.69
1726 1972 9.310449 AGTTTGTAGTGGAATCTCTAAGACTTA 57.690 33.333 0.00 0.00 0.00 2.24
1727 1973 8.196378 AGTTTGTAGTGGAATCTCTAAGACTT 57.804 34.615 0.00 0.00 0.00 3.01
1728 1974 7.784470 AGTTTGTAGTGGAATCTCTAAGACT 57.216 36.000 0.00 0.00 0.00 3.24
1729 1975 8.521176 TGTAGTTTGTAGTGGAATCTCTAAGAC 58.479 37.037 0.00 0.00 0.00 3.01
1730 1976 8.645814 TGTAGTTTGTAGTGGAATCTCTAAGA 57.354 34.615 0.00 0.00 0.00 2.10
1733 1979 8.618677 CGTATGTAGTTTGTAGTGGAATCTCTA 58.381 37.037 0.00 0.00 0.00 2.43
1734 1980 7.416438 CCGTATGTAGTTTGTAGTGGAATCTCT 60.416 40.741 0.00 0.00 0.00 3.10
1735 1981 6.696148 CCGTATGTAGTTTGTAGTGGAATCTC 59.304 42.308 0.00 0.00 0.00 2.75
1736 1982 6.379133 TCCGTATGTAGTTTGTAGTGGAATCT 59.621 38.462 0.00 0.00 0.00 2.40
1737 1983 6.567050 TCCGTATGTAGTTTGTAGTGGAATC 58.433 40.000 0.00 0.00 0.00 2.52
1738 1984 6.534475 TCCGTATGTAGTTTGTAGTGGAAT 57.466 37.500 0.00 0.00 0.00 3.01
1739 1985 5.981088 TCCGTATGTAGTTTGTAGTGGAA 57.019 39.130 0.00 0.00 0.00 3.53
1740 1986 5.419788 ACATCCGTATGTAGTTTGTAGTGGA 59.580 40.000 0.00 0.00 44.66 4.02
1741 1987 5.657474 ACATCCGTATGTAGTTTGTAGTGG 58.343 41.667 0.00 0.00 44.66 4.00
1783 2029 6.148480 ACAGAGCAAAATGAGTGAATCTACAC 59.852 38.462 0.00 0.00 40.60 2.90
1784 2030 6.233434 ACAGAGCAAAATGAGTGAATCTACA 58.767 36.000 0.00 0.00 0.00 2.74
1785 2031 6.734104 ACAGAGCAAAATGAGTGAATCTAC 57.266 37.500 0.00 0.00 0.00 2.59
1786 2032 8.043113 ACATACAGAGCAAAATGAGTGAATCTA 58.957 33.333 0.00 0.00 0.00 1.98
1787 2033 6.883217 ACATACAGAGCAAAATGAGTGAATCT 59.117 34.615 0.00 0.00 0.00 2.40
1788 2034 7.081526 ACATACAGAGCAAAATGAGTGAATC 57.918 36.000 0.00 0.00 0.00 2.52
1789 2035 7.826252 ACTACATACAGAGCAAAATGAGTGAAT 59.174 33.333 0.00 0.00 0.00 2.57
1790 2036 7.161404 ACTACATACAGAGCAAAATGAGTGAA 58.839 34.615 0.00 0.00 0.00 3.18
1791 2037 6.701340 ACTACATACAGAGCAAAATGAGTGA 58.299 36.000 0.00 0.00 0.00 3.41
1792 2038 6.036517 GGACTACATACAGAGCAAAATGAGTG 59.963 42.308 0.00 0.00 0.00 3.51
1793 2039 6.109359 GGACTACATACAGAGCAAAATGAGT 58.891 40.000 0.00 0.00 0.00 3.41
1794 2040 6.108687 TGGACTACATACAGAGCAAAATGAG 58.891 40.000 0.00 0.00 0.00 2.90
1795 2041 6.048732 TGGACTACATACAGAGCAAAATGA 57.951 37.500 0.00 0.00 0.00 2.57
1796 2042 6.932356 ATGGACTACATACAGAGCAAAATG 57.068 37.500 0.00 0.00 38.26 2.32
1797 2043 7.712639 CACTATGGACTACATACAGAGCAAAAT 59.287 37.037 0.00 0.00 41.03 1.82
1798 2044 7.041721 CACTATGGACTACATACAGAGCAAAA 58.958 38.462 0.00 0.00 41.03 2.44
1799 2045 6.406961 CCACTATGGACTACATACAGAGCAAA 60.407 42.308 0.00 0.00 40.96 3.68
1800 2046 5.069119 CCACTATGGACTACATACAGAGCAA 59.931 44.000 0.00 0.00 40.96 3.91
1801 2047 4.584743 CCACTATGGACTACATACAGAGCA 59.415 45.833 0.00 0.00 40.96 4.26
1802 2048 4.827835 TCCACTATGGACTACATACAGAGC 59.172 45.833 0.00 0.00 42.67 4.09
1815 2061 6.158695 AGCCTTTTTAGAGATTCCACTATGGA 59.841 38.462 0.00 0.00 46.61 3.41
1816 2062 6.360618 AGCCTTTTTAGAGATTCCACTATGG 58.639 40.000 0.00 0.00 39.43 2.74
1817 2063 7.872113 AAGCCTTTTTAGAGATTCCACTATG 57.128 36.000 0.00 0.00 0.00 2.23
1832 2078 8.683615 CCTCCGTTTCTAAATATAAGCCTTTTT 58.316 33.333 0.00 0.00 0.00 1.94
1833 2079 7.284716 CCCTCCGTTTCTAAATATAAGCCTTTT 59.715 37.037 0.00 0.00 0.00 2.27
1834 2080 6.771267 CCCTCCGTTTCTAAATATAAGCCTTT 59.229 38.462 0.00 0.00 0.00 3.11
1835 2081 6.100714 TCCCTCCGTTTCTAAATATAAGCCTT 59.899 38.462 0.00 0.00 0.00 4.35
1836 2082 5.605488 TCCCTCCGTTTCTAAATATAAGCCT 59.395 40.000 0.00 0.00 0.00 4.58
1837 2083 5.861727 TCCCTCCGTTTCTAAATATAAGCC 58.138 41.667 0.00 0.00 0.00 4.35
1838 2084 6.522946 ACTCCCTCCGTTTCTAAATATAAGC 58.477 40.000 0.00 0.00 0.00 3.09
1839 2085 9.694137 CTTACTCCCTCCGTTTCTAAATATAAG 57.306 37.037 0.00 0.00 0.00 1.73
1840 2086 9.425248 TCTTACTCCCTCCGTTTCTAAATATAA 57.575 33.333 0.00 0.00 0.00 0.98
1841 2087 9.075678 CTCTTACTCCCTCCGTTTCTAAATATA 57.924 37.037 0.00 0.00 0.00 0.86
1842 2088 7.783596 TCTCTTACTCCCTCCGTTTCTAAATAT 59.216 37.037 0.00 0.00 0.00 1.28
1843 2089 7.067981 GTCTCTTACTCCCTCCGTTTCTAAATA 59.932 40.741 0.00 0.00 0.00 1.40
1844 2090 5.956563 TCTCTTACTCCCTCCGTTTCTAAAT 59.043 40.000 0.00 0.00 0.00 1.40
1845 2091 5.184671 GTCTCTTACTCCCTCCGTTTCTAAA 59.815 44.000 0.00 0.00 0.00 1.85
1846 2092 4.704057 GTCTCTTACTCCCTCCGTTTCTAA 59.296 45.833 0.00 0.00 0.00 2.10
1847 2093 4.263639 TGTCTCTTACTCCCTCCGTTTCTA 60.264 45.833 0.00 0.00 0.00 2.10
1848 2094 3.090790 GTCTCTTACTCCCTCCGTTTCT 58.909 50.000 0.00 0.00 0.00 2.52
1849 2095 2.824341 TGTCTCTTACTCCCTCCGTTTC 59.176 50.000 0.00 0.00 0.00 2.78
1850 2096 2.561858 GTGTCTCTTACTCCCTCCGTTT 59.438 50.000 0.00 0.00 0.00 3.60
1851 2097 2.169330 GTGTCTCTTACTCCCTCCGTT 58.831 52.381 0.00 0.00 0.00 4.44
1852 2098 1.355043 AGTGTCTCTTACTCCCTCCGT 59.645 52.381 0.00 0.00 0.00 4.69
1853 2099 2.131776 AGTGTCTCTTACTCCCTCCG 57.868 55.000 0.00 0.00 0.00 4.63
1854 2100 3.166679 ACAAGTGTCTCTTACTCCCTCC 58.833 50.000 0.00 0.00 34.66 4.30
1855 2101 5.011586 ACTACAAGTGTCTCTTACTCCCTC 58.988 45.833 0.00 0.00 34.66 4.30
1856 2102 5.000570 ACTACAAGTGTCTCTTACTCCCT 57.999 43.478 0.00 0.00 34.66 4.20
1857 2103 5.243283 TGAACTACAAGTGTCTCTTACTCCC 59.757 44.000 0.00 0.00 34.66 4.30
1858 2104 6.328641 TGAACTACAAGTGTCTCTTACTCC 57.671 41.667 0.00 0.00 34.66 3.85
1859 2105 8.082852 TCATTGAACTACAAGTGTCTCTTACTC 58.917 37.037 0.00 0.00 42.02 2.59
1860 2106 7.952671 TCATTGAACTACAAGTGTCTCTTACT 58.047 34.615 0.00 0.00 42.02 2.24
1861 2107 8.082852 TCTCATTGAACTACAAGTGTCTCTTAC 58.917 37.037 0.00 0.00 42.02 2.34
1862 2108 8.178313 TCTCATTGAACTACAAGTGTCTCTTA 57.822 34.615 0.00 0.00 42.02 2.10
1863 2109 7.055667 TCTCATTGAACTACAAGTGTCTCTT 57.944 36.000 0.00 0.00 42.02 2.85
1962 2209 4.792068 ACCATCCAGAACAAGTTTCAGAA 58.208 39.130 0.00 0.00 0.00 3.02
1972 2219 4.868268 ACTAGCTAGTACCATCCAGAACA 58.132 43.478 24.97 0.00 34.13 3.18
1987 2234 3.074687 CCCTGGATCCTAGTGACTAGCTA 59.925 52.174 14.06 4.87 33.12 3.32
1990 2237 2.491825 CCCCCTGGATCCTAGTGACTAG 60.492 59.091 14.23 12.62 34.16 2.57
1993 2240 0.264955 TCCCCCTGGATCCTAGTGAC 59.735 60.000 14.23 0.00 35.03 3.67
1997 2244 0.474660 CCCTTCCCCCTGGATCCTAG 60.475 65.000 14.23 8.65 41.40 3.02
2007 2254 3.097162 CCAGCTACCCCTTCCCCC 61.097 72.222 0.00 0.00 0.00 5.40
2012 2259 1.574263 GAGTCTTCCAGCTACCCCTT 58.426 55.000 0.00 0.00 0.00 3.95
2032 2281 7.974501 CACTGGGACTATACACTAACTTAACAG 59.025 40.741 0.00 0.00 0.00 3.16
2157 2427 9.477484 CTACATCACTTTGTTACTAGTTCAAGT 57.523 33.333 0.00 1.93 0.00 3.16
2164 2434 5.978814 AGGGCTACATCACTTTGTTACTAG 58.021 41.667 0.00 0.00 0.00 2.57
2182 2452 8.537728 TGACAATTTTCATTATATCAAGGGCT 57.462 30.769 0.00 0.00 0.00 5.19
2258 2531 6.366630 GCAGACAAGAAGTTGATTAACTCAC 58.633 40.000 3.00 1.95 46.14 3.51
2259 2532 5.470098 GGCAGACAAGAAGTTGATTAACTCA 59.530 40.000 3.00 0.00 46.14 3.41
2265 2538 5.302568 TCAATTGGCAGACAAGAAGTTGATT 59.697 36.000 5.42 0.00 43.48 2.57
2271 2544 4.482386 CACATCAATTGGCAGACAAGAAG 58.518 43.478 5.42 0.00 43.48 2.85
2287 2561 4.074259 GCTATCCAATATGGTGCACATCA 58.926 43.478 20.43 8.86 41.03 3.07
2331 2605 3.272574 AGACTGGTATGATGTGCAAGG 57.727 47.619 0.00 0.00 0.00 3.61
2347 2621 5.442391 GACAGAGGGAGTATTCACTAGACT 58.558 45.833 0.00 0.00 37.14 3.24
2361 2635 3.178865 ACTTTAATTCGGGACAGAGGGA 58.821 45.455 0.00 0.00 0.00 4.20
2362 2636 3.629142 ACTTTAATTCGGGACAGAGGG 57.371 47.619 0.00 0.00 0.00 4.30
2363 2637 4.324267 ACAACTTTAATTCGGGACAGAGG 58.676 43.478 0.00 0.00 0.00 3.69
2364 2638 6.090898 CACTACAACTTTAATTCGGGACAGAG 59.909 42.308 0.00 0.00 0.00 3.35
2365 2639 5.929992 CACTACAACTTTAATTCGGGACAGA 59.070 40.000 0.00 0.00 0.00 3.41
2366 2640 5.699458 ACACTACAACTTTAATTCGGGACAG 59.301 40.000 0.00 0.00 0.00 3.51
2367 2641 5.613329 ACACTACAACTTTAATTCGGGACA 58.387 37.500 0.00 0.00 0.00 4.02
2368 2642 6.549912 AACACTACAACTTTAATTCGGGAC 57.450 37.500 0.00 0.00 0.00 4.46
2369 2643 7.669427 TCTAACACTACAACTTTAATTCGGGA 58.331 34.615 0.00 0.00 0.00 5.14
2370 2644 7.894376 TCTAACACTACAACTTTAATTCGGG 57.106 36.000 0.00 0.00 0.00 5.14
2376 2650 9.577110 CGGATGTATCTAACACTACAACTTTAA 57.423 33.333 0.00 0.00 42.09 1.52
2377 2651 8.742777 ACGGATGTATCTAACACTACAACTTTA 58.257 33.333 0.00 0.00 42.09 1.85
2378 2652 7.609056 ACGGATGTATCTAACACTACAACTTT 58.391 34.615 0.00 0.00 42.09 2.66
2379 2653 7.166691 ACGGATGTATCTAACACTACAACTT 57.833 36.000 0.00 0.00 42.09 2.66
2380 2654 6.770746 ACGGATGTATCTAACACTACAACT 57.229 37.500 0.00 0.00 42.09 3.16
2381 2655 9.525409 AAATACGGATGTATCTAACACTACAAC 57.475 33.333 0.00 0.00 42.09 3.32
2386 2660 9.128404 TGTCTAAATACGGATGTATCTAACACT 57.872 33.333 0.00 0.00 42.09 3.55
2387 2661 9.740239 TTGTCTAAATACGGATGTATCTAACAC 57.260 33.333 0.00 0.00 42.09 3.32
2396 2670 9.530633 GTCTTAGATTTGTCTAAATACGGATGT 57.469 33.333 0.26 0.00 36.66 3.06
2397 2671 9.529325 TGTCTTAGATTTGTCTAAATACGGATG 57.471 33.333 0.26 0.00 36.66 3.51
2399 2673 9.582431 CTTGTCTTAGATTTGTCTAAATACGGA 57.418 33.333 0.26 0.00 36.66 4.69
2400 2674 9.367444 ACTTGTCTTAGATTTGTCTAAATACGG 57.633 33.333 0.26 2.64 36.66 4.02
2408 2682 9.014297 CCCAAATTACTTGTCTTAGATTTGTCT 57.986 33.333 0.00 0.00 34.40 3.41
2409 2683 9.010029 TCCCAAATTACTTGTCTTAGATTTGTC 57.990 33.333 0.00 0.00 34.40 3.18
2410 2684 8.934023 TCCCAAATTACTTGTCTTAGATTTGT 57.066 30.769 0.00 0.00 34.40 2.83
2411 2685 9.793252 CATCCCAAATTACTTGTCTTAGATTTG 57.207 33.333 0.00 0.00 35.40 2.32
2412 2686 8.971073 CCATCCCAAATTACTTGTCTTAGATTT 58.029 33.333 0.00 0.00 32.65 2.17
2413 2687 8.336235 TCCATCCCAAATTACTTGTCTTAGATT 58.664 33.333 0.00 0.00 32.65 2.40
2414 2688 7.872138 TCCATCCCAAATTACTTGTCTTAGAT 58.128 34.615 0.00 0.00 32.65 1.98
2415 2689 7.265599 TCCATCCCAAATTACTTGTCTTAGA 57.734 36.000 0.00 0.00 32.65 2.10
2416 2690 6.543831 CCTCCATCCCAAATTACTTGTCTTAG 59.456 42.308 0.00 0.00 32.65 2.18
2417 2691 6.011981 ACCTCCATCCCAAATTACTTGTCTTA 60.012 38.462 0.00 0.00 32.65 2.10
2418 2692 5.222337 ACCTCCATCCCAAATTACTTGTCTT 60.222 40.000 0.00 0.00 32.65 3.01
2419 2693 4.292306 ACCTCCATCCCAAATTACTTGTCT 59.708 41.667 0.00 0.00 32.65 3.41
2420 2694 4.600062 ACCTCCATCCCAAATTACTTGTC 58.400 43.478 0.00 0.00 32.65 3.18
2421 2695 4.675063 ACCTCCATCCCAAATTACTTGT 57.325 40.909 0.00 0.00 32.65 3.16
2422 2696 8.796475 CATATTACCTCCATCCCAAATTACTTG 58.204 37.037 0.00 0.00 34.52 3.16
2423 2697 8.511126 ACATATTACCTCCATCCCAAATTACTT 58.489 33.333 0.00 0.00 0.00 2.24
2424 2698 8.057246 ACATATTACCTCCATCCCAAATTACT 57.943 34.615 0.00 0.00 0.00 2.24
2425 2699 8.706322 AACATATTACCTCCATCCCAAATTAC 57.294 34.615 0.00 0.00 0.00 1.89
2430 2704 9.177927 ACTTATAACATATTACCTCCATCCCAA 57.822 33.333 0.00 0.00 0.00 4.12
2431 2705 8.751215 ACTTATAACATATTACCTCCATCCCA 57.249 34.615 0.00 0.00 0.00 4.37
2436 2710 9.146586 ACGGTAACTTATAACATATTACCTCCA 57.853 33.333 14.96 0.00 41.70 3.86
2458 2732 6.569994 GCGGAAGATTACAAGATATCTACGGT 60.570 42.308 5.46 7.65 34.61 4.83
2459 2733 5.800941 GCGGAAGATTACAAGATATCTACGG 59.199 44.000 5.46 1.66 34.61 4.02
2460 2734 6.379386 TGCGGAAGATTACAAGATATCTACG 58.621 40.000 5.46 3.09 35.90 3.51
2461 2735 8.764524 AATGCGGAAGATTACAAGATATCTAC 57.235 34.615 5.46 0.00 31.10 2.59
2464 2738 8.226448 CAGAAATGCGGAAGATTACAAGATATC 58.774 37.037 0.00 0.00 0.00 1.63
2465 2739 7.308229 GCAGAAATGCGGAAGATTACAAGATAT 60.308 37.037 0.00 0.00 0.00 1.63
2467 2741 5.220931 GCAGAAATGCGGAAGATTACAAGAT 60.221 40.000 0.00 0.00 0.00 2.40
2468 2742 4.094887 GCAGAAATGCGGAAGATTACAAGA 59.905 41.667 0.00 0.00 0.00 3.02
2469 2743 4.346129 GCAGAAATGCGGAAGATTACAAG 58.654 43.478 0.00 0.00 0.00 3.16
2470 2744 3.128589 GGCAGAAATGCGGAAGATTACAA 59.871 43.478 0.00 0.00 35.24 2.41
2471 2745 2.682856 GGCAGAAATGCGGAAGATTACA 59.317 45.455 0.00 0.00 35.24 2.41
2472 2746 2.682856 TGGCAGAAATGCGGAAGATTAC 59.317 45.455 0.00 0.00 35.24 1.89
2473 2747 2.997980 TGGCAGAAATGCGGAAGATTA 58.002 42.857 0.00 0.00 35.24 1.75
2474 2748 1.838112 TGGCAGAAATGCGGAAGATT 58.162 45.000 0.00 0.00 35.24 2.40
2475 2749 1.747355 CTTGGCAGAAATGCGGAAGAT 59.253 47.619 5.23 0.00 35.24 2.40
2476 2750 1.167851 CTTGGCAGAAATGCGGAAGA 58.832 50.000 5.23 0.00 35.24 2.87
2477 2751 1.167851 TCTTGGCAGAAATGCGGAAG 58.832 50.000 0.00 4.93 35.24 3.46
2478 2752 1.614996 TTCTTGGCAGAAATGCGGAA 58.385 45.000 0.00 0.00 35.99 4.30
2479 2753 1.614996 TTTCTTGGCAGAAATGCGGA 58.385 45.000 7.67 0.00 42.99 5.54
2485 2759 6.744112 ACGAAATAATGTTTCTTGGCAGAAA 58.256 32.000 7.67 7.67 45.20 2.52
2486 2760 6.325919 ACGAAATAATGTTTCTTGGCAGAA 57.674 33.333 1.26 0.00 37.24 3.02
2487 2761 5.957842 ACGAAATAATGTTTCTTGGCAGA 57.042 34.783 1.26 0.00 0.00 4.26
2488 2762 7.253750 GCAATACGAAATAATGTTTCTTGGCAG 60.254 37.037 1.26 0.00 0.00 4.85
2489 2763 6.529829 GCAATACGAAATAATGTTTCTTGGCA 59.470 34.615 1.26 0.00 0.00 4.92
2490 2764 6.019881 GGCAATACGAAATAATGTTTCTTGGC 60.020 38.462 11.26 11.26 33.28 4.52
2491 2765 7.220683 CAGGCAATACGAAATAATGTTTCTTGG 59.779 37.037 1.26 0.00 0.00 3.61
2492 2766 7.220683 CCAGGCAATACGAAATAATGTTTCTTG 59.779 37.037 1.26 0.99 0.00 3.02
2493 2767 7.093945 ACCAGGCAATACGAAATAATGTTTCTT 60.094 33.333 1.26 0.00 0.00 2.52
2507 2781 2.602257 TCAGATGACCAGGCAATACG 57.398 50.000 0.00 0.00 0.00 3.06
2518 2794 4.275443 GGAAGGAAGCATTGATCAGATGAC 59.725 45.833 16.98 10.64 0.00 3.06
2665 2941 2.476619 GTCCGATTTGGCAGATATCACG 59.523 50.000 5.32 0.00 37.80 4.35
2678 2954 2.092861 TCTCTCTCTCTCCGTCCGATTT 60.093 50.000 0.00 0.00 0.00 2.17
2683 2959 1.021968 GCTTCTCTCTCTCTCCGTCC 58.978 60.000 0.00 0.00 0.00 4.79
2698 2974 0.107654 AGGTGGATTACGGCAGCTTC 60.108 55.000 0.00 0.00 0.00 3.86
2705 3000 7.837863 ACATGATAATACTAGGTGGATTACGG 58.162 38.462 0.00 0.00 0.00 4.02
2707 3002 9.654663 GGAACATGATAATACTAGGTGGATTAC 57.345 37.037 0.00 0.00 0.00 1.89
2744 3039 2.514803 ACCCATGCTTAGGTCAACAAC 58.485 47.619 0.00 0.00 0.00 3.32
2759 3054 1.349026 CACACCAGAGTTCAGACCCAT 59.651 52.381 0.00 0.00 0.00 4.00
3026 3326 6.145696 GCCAGCGAGTAATCGTAATAGAAATT 59.854 38.462 14.65 0.00 35.26 1.82
3115 3415 5.144100 AGTGGAGTCTATATTGAGAGTGGG 58.856 45.833 0.00 0.00 0.00 4.61
3124 3424 3.226777 AGCTGCGAGTGGAGTCTATATT 58.773 45.455 0.00 0.00 35.69 1.28
3153 3484 2.753296 GTGGTTGCAATAAAGCAGCAA 58.247 42.857 0.59 0.00 46.00 3.91
3179 3510 6.671190 TGAATGTTGTGAGTGTGAATCAATC 58.329 36.000 0.00 0.00 40.93 2.67
3181 3512 5.821995 TCTGAATGTTGTGAGTGTGAATCAA 59.178 36.000 0.00 0.00 0.00 2.57
3193 3524 3.752747 TGCATGTAGGTCTGAATGTTGTG 59.247 43.478 0.00 0.00 0.00 3.33
3213 3544 5.468746 TGTACAGATGTGAAGTTTAAGGTGC 59.531 40.000 0.00 0.00 0.00 5.01
3216 3547 7.490962 TTGTGTACAGATGTGAAGTTTAAGG 57.509 36.000 0.00 0.00 0.00 2.69
3236 3567 3.988379 TTCAGCTTTAGGCACTTTGTG 57.012 42.857 0.00 0.00 44.79 3.33
3265 3596 6.327279 AGGAAGCAATAACAAGTAACAACC 57.673 37.500 0.00 0.00 0.00 3.77
3294 3625 8.517878 AGTGATATTTGAAACAGATTCCACAAG 58.482 33.333 0.00 0.00 37.22 3.16
3398 3730 2.300152 AGGTGCTCGAAGTCTGAATCAA 59.700 45.455 0.00 0.00 0.00 2.57
3440 3783 2.359975 GGAGGCTGGGTTTCACCG 60.360 66.667 0.00 0.00 39.83 4.94
3461 3805 5.997746 TGGATCCTTTACTGAAGAAACACAG 59.002 40.000 14.23 0.00 37.57 3.66
3529 3873 2.475818 TGAGCAAGCAAGCAAAACATG 58.524 42.857 3.19 0.00 36.85 3.21
3577 3921 8.607459 AGAAGTATTATCTTCAATTGACTTGCG 58.393 33.333 7.89 0.00 44.18 4.85
3595 3953 5.520748 AGGATGAACCCACAAGAAGTATT 57.479 39.130 0.00 0.00 40.05 1.89
3620 4000 3.058293 TGGCATGAAAGAAACAACGCTAG 60.058 43.478 0.00 0.00 0.00 3.42


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.