Multiple sequence alignment - TraesCS2A01G253400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G253400 chr2A 100.000 1297 0 0 1 1297 385441117 385442413 0.000000e+00 2396.0
1 TraesCS2A01G253400 chr2A 100.000 666 0 0 1554 2219 385442670 385443335 0.000000e+00 1230.0
2 TraesCS2A01G253400 chr5A 96.322 571 15 1 1649 2219 8499431 8499995 0.000000e+00 933.0
3 TraesCS2A01G253400 chr5A 93.939 66 4 0 513 578 387351545 387351610 1.400000e-17 100.0
4 TraesCS2A01G253400 chr3A 96.140 570 16 1 1650 2219 715553460 715554023 0.000000e+00 926.0
5 TraesCS2A01G253400 chr3A 92.308 65 5 0 514 578 15473053 15472989 2.350000e-15 93.5
6 TraesCS2A01G253400 chr2D 86.578 529 26 10 1 512 306338031 306338531 1.940000e-150 542.0
7 TraesCS2A01G253400 chr2D 83.951 405 51 3 876 1266 306339054 306339458 2.080000e-100 375.0
8 TraesCS2A01G253400 chr2B 88.780 410 18 10 72 474 374255906 374256294 5.540000e-131 477.0
9 TraesCS2A01G253400 chr2B 93.939 99 6 0 631 729 374256397 374256495 1.370000e-32 150.0
10 TraesCS2A01G253400 chr3B 88.194 288 30 3 1935 2219 13902901 13903187 7.590000e-90 340.0
11 TraesCS2A01G253400 chr3B 88.889 162 16 2 1650 1811 13902605 13902764 4.830000e-47 198.0
12 TraesCS2A01G253400 chr6B 88.235 272 31 1 1948 2219 134816077 134815807 7.640000e-85 324.0
13 TraesCS2A01G253400 chr5D 86.942 291 27 4 1647 1936 446512295 446512575 1.280000e-82 316.0
14 TraesCS2A01G253400 chr5B 86.505 289 35 4 1930 2218 439987418 439987702 4.600000e-82 315.0
15 TraesCS2A01G253400 chr5B 86.061 165 19 2 1646 1810 439987139 439987299 8.140000e-40 174.0
16 TraesCS2A01G253400 chr5B 94.737 57 3 0 518 574 136044919 136044863 3.030000e-14 89.8
17 TraesCS2A01G253400 chr6D 86.159 289 36 3 1930 2218 269967501 269967785 2.140000e-80 309.0
18 TraesCS2A01G253400 chr6D 84.722 288 34 3 1650 1936 269967259 269967537 1.680000e-71 279.0
19 TraesCS2A01G253400 chr6D 77.005 374 45 18 1848 2219 347168879 347169213 2.260000e-40 176.0
20 TraesCS2A01G253400 chr6D 83.333 186 17 12 1651 1833 347163846 347164020 2.280000e-35 159.0
21 TraesCS2A01G253400 chr4D 86.159 289 36 3 1930 2218 43263274 43263558 2.140000e-80 309.0
22 TraesCS2A01G253400 chr4D 84.068 295 34 6 1643 1936 43263028 43263310 2.810000e-69 272.0
23 TraesCS2A01G253400 chrUn 100.000 158 0 0 2062 2219 479441720 479441877 2.160000e-75 292.0
24 TraesCS2A01G253400 chr1A 82.927 205 17 7 1709 1906 541062391 541062198 3.790000e-38 169.0
25 TraesCS2A01G253400 chr4A 95.455 66 3 0 513 578 682740712 682740647 3.010000e-19 106.0
26 TraesCS2A01G253400 chr4A 92.188 64 5 0 515 578 436400232 436400295 8.440000e-15 91.6
27 TraesCS2A01G253400 chr7B 91.549 71 5 1 508 578 328551932 328552001 1.810000e-16 97.1
28 TraesCS2A01G253400 chr7B 88.000 75 8 1 507 580 498300531 498300605 1.090000e-13 87.9
29 TraesCS2A01G253400 chr7D 92.308 65 4 1 509 573 19415750 19415813 8.440000e-15 91.6
30 TraesCS2A01G253400 chr4B 90.476 63 6 0 512 574 34439504 34439566 1.410000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G253400 chr2A 385441117 385443335 2218 False 1813.0 2396 100.0000 1 2219 2 chr2A.!!$F1 2218
1 TraesCS2A01G253400 chr5A 8499431 8499995 564 False 933.0 933 96.3220 1649 2219 1 chr5A.!!$F1 570
2 TraesCS2A01G253400 chr3A 715553460 715554023 563 False 926.0 926 96.1400 1650 2219 1 chr3A.!!$F1 569
3 TraesCS2A01G253400 chr2D 306338031 306339458 1427 False 458.5 542 85.2645 1 1266 2 chr2D.!!$F1 1265
4 TraesCS2A01G253400 chr2B 374255906 374256495 589 False 313.5 477 91.3595 72 729 2 chr2B.!!$F1 657
5 TraesCS2A01G253400 chr3B 13902605 13903187 582 False 269.0 340 88.5415 1650 2219 2 chr3B.!!$F1 569
6 TraesCS2A01G253400 chr5B 439987139 439987702 563 False 244.5 315 86.2830 1646 2218 2 chr5B.!!$F1 572
7 TraesCS2A01G253400 chr6D 269967259 269967785 526 False 294.0 309 85.4405 1650 2218 2 chr6D.!!$F3 568
8 TraesCS2A01G253400 chr4D 43263028 43263558 530 False 290.5 309 85.1135 1643 2218 2 chr4D.!!$F1 575

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
954 1201 0.105964 TCTGGCTTGTTGTACGTGCT 59.894 50.0 4.97 0.0 0.0 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2051 2364 0.108138 GAGATGTACCTGCCGCAGTT 60.108 55.0 18.98 7.71 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 87 0.884514 GAGCAAGGAGGGAAAACTGC 59.115 55.000 0.00 0.00 0.00 4.40
82 95 1.068352 AGGGAAAACTGCTCTGGGGT 61.068 55.000 0.00 0.00 0.00 4.95
88 101 4.135153 CTGCTCTGGGGTCGGACG 62.135 72.222 1.43 0.00 0.00 4.79
106 119 3.493503 GGACGCCGAGACCATTAATTAAG 59.506 47.826 3.94 0.00 34.74 1.85
109 122 3.181774 CGCCGAGACCATTAATTAAGTCG 59.818 47.826 3.94 6.83 34.41 4.18
111 124 4.444720 GCCGAGACCATTAATTAAGTCGAG 59.555 45.833 3.94 6.31 34.41 4.04
171 189 2.668550 GCCCACAGTGGAACGACC 60.669 66.667 22.37 0.00 45.86 4.79
319 341 1.081442 CACCGCGGGAAAGAAAAGC 60.081 57.895 31.76 0.00 0.00 3.51
322 344 2.265182 CGCGGGAAAGAAAAGCCCA 61.265 57.895 0.00 0.00 42.14 5.36
365 390 1.455959 CGTTTTGAACCCCCACCCA 60.456 57.895 0.00 0.00 0.00 4.51
371 396 1.303282 GAACCCCCACCCACATCTC 59.697 63.158 0.00 0.00 0.00 2.75
374 399 2.268920 CCCCACCCACATCTCACG 59.731 66.667 0.00 0.00 0.00 4.35
379 404 2.097036 CCACCCACATCTCACGTACTA 58.903 52.381 0.00 0.00 0.00 1.82
398 423 1.517257 CTGCTAGTCGCGTTGAGGG 60.517 63.158 5.77 0.00 43.27 4.30
403 428 1.880819 TAGTCGCGTTGAGGGTTCCC 61.881 60.000 5.77 0.00 0.00 3.97
454 479 3.303395 CGTCAAAGCACCTTCAACTTCTC 60.303 47.826 0.00 0.00 0.00 2.87
490 515 6.406692 ACTACTATATGGTAACCAGCACTG 57.593 41.667 0.26 0.00 36.75 3.66
492 517 5.277857 ACTATATGGTAACCAGCACTGTC 57.722 43.478 0.00 0.00 36.75 3.51
539 564 6.647212 TTTTCTAGAATACACACGAGCATG 57.353 37.500 5.89 0.00 0.00 4.06
540 565 3.706698 TCTAGAATACACACGAGCATGC 58.293 45.455 10.51 10.51 0.00 4.06
541 566 1.280982 AGAATACACACGAGCATGCG 58.719 50.000 13.01 0.84 37.29 4.73
543 568 2.159296 AGAATACACACGAGCATGCGTA 60.159 45.455 13.01 7.68 43.59 4.42
544 569 2.509052 ATACACACGAGCATGCGTAT 57.491 45.000 13.01 9.74 43.59 3.06
546 571 0.108851 ACACACGAGCATGCGTATCA 60.109 50.000 13.01 0.00 43.59 2.15
547 572 1.211743 CACACGAGCATGCGTATCAT 58.788 50.000 13.01 0.00 43.59 2.45
550 575 4.165779 CACACGAGCATGCGTATCATATA 58.834 43.478 13.01 0.00 43.59 0.86
551 576 4.800471 CACACGAGCATGCGTATCATATAT 59.200 41.667 13.01 0.00 43.59 0.86
553 578 5.516696 ACACGAGCATGCGTATCATATATTC 59.483 40.000 13.01 0.00 43.59 1.75
554 579 5.516339 CACGAGCATGCGTATCATATATTCA 59.484 40.000 13.01 0.00 43.59 2.57
555 580 6.199719 CACGAGCATGCGTATCATATATTCAT 59.800 38.462 13.01 0.00 43.59 2.57
556 581 7.379529 CACGAGCATGCGTATCATATATTCATA 59.620 37.037 13.01 0.00 43.59 2.15
557 582 7.592903 ACGAGCATGCGTATCATATATTCATAG 59.407 37.037 13.01 0.00 43.61 2.23
558 583 7.805071 CGAGCATGCGTATCATATATTCATAGA 59.195 37.037 13.01 0.00 33.19 1.98
560 585 9.473640 AGCATGCGTATCATATATTCATAGAAG 57.526 33.333 13.01 0.00 33.19 2.85
561 586 9.468532 GCATGCGTATCATATATTCATAGAAGA 57.531 33.333 0.00 0.00 33.19 2.87
576 601 8.668510 TTCATAGAAGAAGATGCCAAGATAAC 57.331 34.615 0.00 0.00 0.00 1.89
577 602 7.220030 TCATAGAAGAAGATGCCAAGATAACC 58.780 38.462 0.00 0.00 0.00 2.85
578 603 5.441718 AGAAGAAGATGCCAAGATAACCA 57.558 39.130 0.00 0.00 0.00 3.67
579 604 5.819991 AGAAGAAGATGCCAAGATAACCAA 58.180 37.500 0.00 0.00 0.00 3.67
580 605 6.248433 AGAAGAAGATGCCAAGATAACCAAA 58.752 36.000 0.00 0.00 0.00 3.28
581 606 6.721208 AGAAGAAGATGCCAAGATAACCAAAA 59.279 34.615 0.00 0.00 0.00 2.44
582 607 6.916360 AGAAGATGCCAAGATAACCAAAAA 57.084 33.333 0.00 0.00 0.00 1.94
583 608 7.486407 AGAAGATGCCAAGATAACCAAAAAT 57.514 32.000 0.00 0.00 0.00 1.82
584 609 8.593945 AGAAGATGCCAAGATAACCAAAAATA 57.406 30.769 0.00 0.00 0.00 1.40
585 610 9.034800 AGAAGATGCCAAGATAACCAAAAATAA 57.965 29.630 0.00 0.00 0.00 1.40
586 611 9.822185 GAAGATGCCAAGATAACCAAAAATAAT 57.178 29.630 0.00 0.00 0.00 1.28
587 612 9.603921 AAGATGCCAAGATAACCAAAAATAATG 57.396 29.630 0.00 0.00 0.00 1.90
588 613 8.980596 AGATGCCAAGATAACCAAAAATAATGA 58.019 29.630 0.00 0.00 0.00 2.57
589 614 9.768662 GATGCCAAGATAACCAAAAATAATGAT 57.231 29.630 0.00 0.00 0.00 2.45
620 645 2.833794 CCAACACGGTTTCTCTTCTCA 58.166 47.619 0.00 0.00 0.00 3.27
621 646 3.403038 CCAACACGGTTTCTCTTCTCAT 58.597 45.455 0.00 0.00 0.00 2.90
622 647 3.815401 CCAACACGGTTTCTCTTCTCATT 59.185 43.478 0.00 0.00 0.00 2.57
623 648 4.275936 CCAACACGGTTTCTCTTCTCATTT 59.724 41.667 0.00 0.00 0.00 2.32
624 649 5.468746 CCAACACGGTTTCTCTTCTCATTTA 59.531 40.000 0.00 0.00 0.00 1.40
625 650 6.363473 CAACACGGTTTCTCTTCTCATTTAC 58.637 40.000 0.00 0.00 0.00 2.01
626 651 5.607477 ACACGGTTTCTCTTCTCATTTACA 58.393 37.500 0.00 0.00 0.00 2.41
627 652 5.465724 ACACGGTTTCTCTTCTCATTTACAC 59.534 40.000 0.00 0.00 0.00 2.90
628 653 4.995487 ACGGTTTCTCTTCTCATTTACACC 59.005 41.667 0.00 0.00 0.00 4.16
629 654 4.994852 CGGTTTCTCTTCTCATTTACACCA 59.005 41.667 0.00 0.00 0.00 4.17
699 724 3.023832 TGCTAGCCATCCTTTTTAAGCC 58.976 45.455 13.29 0.00 0.00 4.35
710 735 3.119849 CCTTTTTAAGCCCAGATGTGTCG 60.120 47.826 0.00 0.00 0.00 4.35
721 746 1.552337 AGATGTGTCGAAGCCACTCAT 59.448 47.619 6.26 0.00 32.07 2.90
731 756 1.609208 AGCCACTCATGACACAAACC 58.391 50.000 0.00 0.00 0.00 3.27
735 760 1.195448 CACTCATGACACAAACCTCGC 59.805 52.381 0.00 0.00 0.00 5.03
737 762 0.107643 TCATGACACAAACCTCGCCA 59.892 50.000 0.00 0.00 0.00 5.69
738 763 0.238289 CATGACACAAACCTCGCCAC 59.762 55.000 0.00 0.00 0.00 5.01
739 764 1.227999 ATGACACAAACCTCGCCACG 61.228 55.000 0.00 0.00 0.00 4.94
741 766 4.025401 CACAAACCTCGCCACGGC 62.025 66.667 0.00 0.00 37.85 5.68
743 768 3.726517 CAAACCTCGCCACGGCAG 61.727 66.667 9.11 4.85 42.06 4.85
744 769 3.936203 AAACCTCGCCACGGCAGA 61.936 61.111 9.11 5.72 42.06 4.26
745 770 4.681978 AACCTCGCCACGGCAGAC 62.682 66.667 9.11 0.00 42.06 3.51
747 772 4.803426 CCTCGCCACGGCAGACTC 62.803 72.222 9.11 0.00 42.06 3.36
749 774 3.362399 CTCGCCACGGCAGACTCAT 62.362 63.158 9.11 0.00 42.06 2.90
750 775 2.887568 CGCCACGGCAGACTCATC 60.888 66.667 9.11 0.00 42.06 2.92
751 776 2.581354 GCCACGGCAGACTCATCT 59.419 61.111 2.36 0.00 41.49 2.90
752 777 1.520342 GCCACGGCAGACTCATCTC 60.520 63.158 2.36 0.00 41.49 2.75
753 778 1.893062 CCACGGCAGACTCATCTCA 59.107 57.895 0.00 0.00 30.42 3.27
755 780 0.529833 CACGGCAGACTCATCTCACT 59.470 55.000 0.00 0.00 30.42 3.41
756 781 0.529833 ACGGCAGACTCATCTCACTG 59.470 55.000 0.00 0.00 30.42 3.66
759 784 1.468908 GGCAGACTCATCTCACTGACG 60.469 57.143 0.00 0.00 30.42 4.35
762 787 3.757184 CAGACTCATCTCACTGACGAAG 58.243 50.000 0.00 0.00 30.42 3.79
763 788 2.752354 AGACTCATCTCACTGACGAAGG 59.248 50.000 0.00 0.00 0.00 3.46
764 789 2.490115 GACTCATCTCACTGACGAAGGT 59.510 50.000 0.00 0.00 0.00 3.50
765 790 2.490115 ACTCATCTCACTGACGAAGGTC 59.510 50.000 0.00 0.00 43.71 3.85
779 1026 4.196193 ACGAAGGTCACACTGATCAAAAA 58.804 39.130 0.00 0.00 27.47 1.94
781 1028 5.149273 CGAAGGTCACACTGATCAAAAATG 58.851 41.667 0.00 0.00 27.47 2.32
782 1029 5.049474 CGAAGGTCACACTGATCAAAAATGA 60.049 40.000 0.00 0.00 27.47 2.57
785 1032 7.294017 AGGTCACACTGATCAAAAATGATTT 57.706 32.000 0.00 0.00 27.47 2.17
789 1036 9.199982 GTCACACTGATCAAAAATGATTTGAAT 57.800 29.630 7.60 0.00 41.16 2.57
791 1038 9.419297 CACACTGATCAAAAATGATTTGAATCT 57.581 29.630 7.60 0.00 41.16 2.40
795 1042 9.871238 CTGATCAAAAATGATTTGAATCTCCTT 57.129 29.630 7.60 0.00 41.16 3.36
799 1046 9.918630 TCAAAAATGATTTGAATCTCCTTCTTC 57.081 29.630 1.38 0.00 35.69 2.87
800 1047 9.924650 CAAAAATGATTTGAATCTCCTTCTTCT 57.075 29.630 5.42 0.00 36.39 2.85
802 1049 7.878547 AATGATTTGAATCTCCTTCTTCTCC 57.121 36.000 5.42 0.00 36.39 3.71
804 1051 2.969628 TGAATCTCCTTCTTCTCCGC 57.030 50.000 0.00 0.00 34.75 5.54
805 1052 1.135139 TGAATCTCCTTCTTCTCCGCG 59.865 52.381 0.00 0.00 34.75 6.46
806 1053 1.405821 GAATCTCCTTCTTCTCCGCGA 59.594 52.381 8.23 0.00 0.00 5.87
807 1054 0.741915 ATCTCCTTCTTCTCCGCGAC 59.258 55.000 8.23 0.00 0.00 5.19
809 1056 0.179150 CTCCTTCTTCTCCGCGACTG 60.179 60.000 8.23 0.00 0.00 3.51
812 1059 0.794981 CTTCTTCTCCGCGACTGTCG 60.795 60.000 24.78 24.78 43.89 4.35
813 1060 1.512996 TTCTTCTCCGCGACTGTCGT 61.513 55.000 28.38 0.00 42.81 4.34
814 1061 1.512310 CTTCTCCGCGACTGTCGTC 60.512 63.158 28.38 19.81 42.81 4.20
816 1063 1.583495 TTCTCCGCGACTGTCGTCAT 61.583 55.000 28.38 0.00 42.81 3.06
817 1064 1.583967 CTCCGCGACTGTCGTCATC 60.584 63.158 28.38 12.83 42.81 2.92
820 1067 1.425825 CGCGACTGTCGTCATCTCT 59.574 57.895 28.38 0.00 42.81 3.10
821 1068 0.651031 CGCGACTGTCGTCATCTCTA 59.349 55.000 28.38 0.00 42.81 2.43
822 1069 1.261885 CGCGACTGTCGTCATCTCTAT 59.738 52.381 28.38 0.00 42.81 1.98
824 1071 2.032302 GCGACTGTCGTCATCTCTATGT 59.968 50.000 28.38 0.00 42.81 2.29
825 1072 3.846744 GCGACTGTCGTCATCTCTATGTC 60.847 52.174 28.38 6.03 42.81 3.06
826 1073 3.602718 CGACTGTCGTCATCTCTATGTCG 60.603 52.174 21.30 0.00 43.24 4.35
827 1074 3.532542 ACTGTCGTCATCTCTATGTCGA 58.467 45.455 4.10 4.10 46.48 4.20
831 1078 4.288670 TCGTCATCTCTATGTCGAAACC 57.711 45.455 5.47 0.00 45.96 3.27
832 1079 3.036633 CGTCATCTCTATGTCGAAACCG 58.963 50.000 0.00 0.00 44.17 4.44
834 1081 4.554919 CGTCATCTCTATGTCGAAACCGAT 60.555 45.833 0.00 0.00 44.17 4.18
835 1082 4.677378 GTCATCTCTATGTCGAAACCGATG 59.323 45.833 0.00 0.00 38.43 3.84
836 1083 4.578928 TCATCTCTATGTCGAAACCGATGA 59.421 41.667 8.42 8.42 38.43 2.92
837 1084 4.976224 TCTCTATGTCGAAACCGATGAA 57.024 40.909 0.00 0.00 38.43 2.57
838 1085 4.669318 TCTCTATGTCGAAACCGATGAAC 58.331 43.478 0.00 0.00 38.43 3.18
839 1086 4.398358 TCTCTATGTCGAAACCGATGAACT 59.602 41.667 0.00 0.00 38.43 3.01
841 1088 5.100259 TCTATGTCGAAACCGATGAACTTC 58.900 41.667 0.00 0.00 38.43 3.01
842 1089 3.100658 TGTCGAAACCGATGAACTTCA 57.899 42.857 0.00 0.00 38.43 3.02
843 1090 2.798283 TGTCGAAACCGATGAACTTCAC 59.202 45.455 0.00 0.00 38.43 3.18
845 1092 3.432252 GTCGAAACCGATGAACTTCACAT 59.568 43.478 0.00 0.00 38.43 3.21
847 1094 4.084066 TCGAAACCGATGAACTTCACATTG 60.084 41.667 0.00 0.00 0.00 2.82
849 1096 2.549633 CCGATGAACTTCACATTGGC 57.450 50.000 0.00 0.00 40.82 4.52
850 1097 1.133025 CCGATGAACTTCACATTGGCC 59.867 52.381 0.00 0.00 40.82 5.36
851 1098 2.086869 CGATGAACTTCACATTGGCCT 58.913 47.619 3.32 0.00 0.00 5.19
852 1099 2.096496 CGATGAACTTCACATTGGCCTC 59.904 50.000 3.32 0.00 0.00 4.70
853 1100 2.655090 TGAACTTCACATTGGCCTCA 57.345 45.000 3.32 0.00 0.00 3.86
854 1101 2.507484 TGAACTTCACATTGGCCTCAG 58.493 47.619 3.32 0.00 0.00 3.35
855 1102 2.158623 TGAACTTCACATTGGCCTCAGT 60.159 45.455 3.32 0.00 0.00 3.41
856 1103 2.191128 ACTTCACATTGGCCTCAGTC 57.809 50.000 3.32 0.00 0.00 3.51
857 1104 1.701847 ACTTCACATTGGCCTCAGTCT 59.298 47.619 3.32 0.00 0.00 3.24
859 1106 0.247460 TCACATTGGCCTCAGTCTCG 59.753 55.000 3.32 0.00 0.00 4.04
860 1107 0.247460 CACATTGGCCTCAGTCTCGA 59.753 55.000 3.32 0.00 0.00 4.04
861 1108 1.134580 CACATTGGCCTCAGTCTCGAT 60.135 52.381 3.32 0.00 0.00 3.59
862 1109 1.137872 ACATTGGCCTCAGTCTCGATC 59.862 52.381 3.32 0.00 0.00 3.69
863 1110 1.411977 CATTGGCCTCAGTCTCGATCT 59.588 52.381 3.32 0.00 0.00 2.75
864 1111 1.561643 TTGGCCTCAGTCTCGATCTT 58.438 50.000 3.32 0.00 0.00 2.40
866 1113 1.205655 TGGCCTCAGTCTCGATCTTTG 59.794 52.381 3.32 0.00 0.00 2.77
867 1114 1.478510 GGCCTCAGTCTCGATCTTTGA 59.521 52.381 0.00 0.00 0.00 2.69
868 1115 2.481104 GGCCTCAGTCTCGATCTTTGAG 60.481 54.545 0.00 8.54 36.04 3.02
869 1116 2.425312 GCCTCAGTCTCGATCTTTGAGA 59.575 50.000 14.31 3.43 40.07 3.27
870 1117 3.119316 GCCTCAGTCTCGATCTTTGAGAA 60.119 47.826 14.31 0.00 43.65 2.87
871 1118 4.671377 CCTCAGTCTCGATCTTTGAGAAG 58.329 47.826 14.31 0.00 43.65 2.85
872 1119 4.157656 CCTCAGTCTCGATCTTTGAGAAGT 59.842 45.833 14.31 0.00 43.65 3.01
873 1120 5.336372 CCTCAGTCTCGATCTTTGAGAAGTT 60.336 44.000 14.31 0.00 43.65 2.66
874 1121 5.704888 TCAGTCTCGATCTTTGAGAAGTTC 58.295 41.667 0.00 0.00 43.65 3.01
890 1137 2.504367 AGTTCAAGTCCCGATTTGGTG 58.496 47.619 0.77 0.00 35.15 4.17
892 1139 0.608035 TCAAGTCCCGATTTGGTGGC 60.608 55.000 0.77 0.00 35.15 5.01
916 1163 0.171455 GCCACCAACACGTTTTGTCA 59.829 50.000 13.06 0.00 37.51 3.58
921 1168 1.923864 CCAACACGTTTTGTCAAAGGC 59.076 47.619 13.06 0.00 37.51 4.35
923 1170 0.806241 ACACGTTTTGTCAAAGGCGT 59.194 45.000 18.16 18.16 29.79 5.68
942 1189 2.045926 GGCGGTGATGTCTGGCTT 60.046 61.111 0.00 0.00 36.52 4.35
954 1201 0.105964 TCTGGCTTGTTGTACGTGCT 59.894 50.000 4.97 0.00 0.00 4.40
955 1202 0.235665 CTGGCTTGTTGTACGTGCTG 59.764 55.000 4.97 0.00 0.00 4.41
957 1204 1.156736 GGCTTGTTGTACGTGCTGAT 58.843 50.000 4.97 0.00 0.00 2.90
990 1237 0.179100 CCCTCGTGCGTGATCTCATT 60.179 55.000 0.00 0.00 0.00 2.57
991 1238 1.203928 CCTCGTGCGTGATCTCATTC 58.796 55.000 0.00 0.00 0.00 2.67
1020 1267 2.440817 GGGGGTCCCGTCGATGAAT 61.441 63.158 6.11 0.00 36.85 2.57
1024 1271 0.174845 GGTCCCGTCGATGAATGTCA 59.825 55.000 6.11 0.00 0.00 3.58
1031 1278 3.190079 CGTCGATGAATGTCATGGAAGT 58.810 45.455 0.00 0.00 41.96 3.01
1033 1280 3.243877 GTCGATGAATGTCATGGAAGTCG 59.756 47.826 4.75 0.00 41.96 4.18
1097 1357 1.670791 GACGACCGAAGAGGAGAGAT 58.329 55.000 0.00 0.00 45.00 2.75
1099 1359 0.665835 CGACCGAAGAGGAGAGATGG 59.334 60.000 0.00 0.00 45.00 3.51
1100 1360 1.770294 GACCGAAGAGGAGAGATGGT 58.230 55.000 0.00 0.00 45.00 3.55
1123 1383 1.600916 GAACTGCCGCTTGAAGGGT 60.601 57.895 8.48 0.00 0.00 4.34
1125 1385 2.032528 CTGCCGCTTGAAGGGTCA 59.967 61.111 8.48 0.36 0.00 4.02
1127 1387 1.856265 CTGCCGCTTGAAGGGTCAAC 61.856 60.000 8.48 0.00 38.88 3.18
1152 1412 0.749091 CTGCGGATTTCATGGAGGCA 60.749 55.000 0.00 0.00 0.00 4.75
1157 1417 3.871463 GCGGATTTCATGGAGGCAGATAT 60.871 47.826 0.00 0.00 0.00 1.63
1160 1420 5.507637 GGATTTCATGGAGGCAGATATGAT 58.492 41.667 0.00 0.00 30.45 2.45
1173 1433 2.362397 AGATATGATTGTGCCGACGACT 59.638 45.455 0.00 0.00 0.00 4.18
1183 1443 1.137825 CCGACGACTGAAGAGAGGC 59.862 63.158 0.00 0.00 0.00 4.70
1187 1447 1.254284 ACGACTGAAGAGAGGCAGGG 61.254 60.000 0.00 0.00 36.47 4.45
1203 1463 2.042930 GGGAGGGGGTGGATCTGT 59.957 66.667 0.00 0.00 0.00 3.41
1215 1475 1.233285 GGATCTGTCGCATGGATGGC 61.233 60.000 0.00 0.00 0.00 4.40
1216 1476 0.250209 GATCTGTCGCATGGATGGCT 60.250 55.000 0.00 0.00 0.00 4.75
1219 1479 0.534427 CTGTCGCATGGATGGCTGAT 60.534 55.000 0.00 0.00 0.00 2.90
1224 1484 2.596631 ATGGATGGCTGATGGCGC 60.597 61.111 0.00 0.00 42.94 6.53
1235 1495 0.836606 TGATGGCGCCAGATTCCTTA 59.163 50.000 35.36 10.84 0.00 2.69
1240 1500 0.107654 GCGCCAGATTCCTTACAGGT 60.108 55.000 0.00 0.00 36.53 4.00
1246 1507 0.463833 GATTCCTTACAGGTGGGGCG 60.464 60.000 0.00 0.00 36.53 6.13
1262 1523 0.525455 GGCGTGGGCAATCGAATTTC 60.525 55.000 0.00 0.00 42.47 2.17
1266 1527 1.466950 GTGGGCAATCGAATTTCGTGA 59.533 47.619 17.61 0.75 41.35 4.35
1267 1528 1.466950 TGGGCAATCGAATTTCGTGAC 59.533 47.619 17.61 11.91 41.35 3.67
1268 1529 1.529010 GGGCAATCGAATTTCGTGACG 60.529 52.381 17.61 0.00 41.35 4.35
1269 1530 1.529010 GGCAATCGAATTTCGTGACGG 60.529 52.381 17.61 6.54 41.35 4.79
1270 1531 1.797964 CAATCGAATTTCGTGACGGC 58.202 50.000 17.61 0.00 41.35 5.68
1271 1532 0.368907 AATCGAATTTCGTGACGGCG 59.631 50.000 17.61 4.80 41.35 6.46
1272 1533 0.457166 ATCGAATTTCGTGACGGCGA 60.457 50.000 16.62 7.62 41.35 5.54
1277 1538 4.238385 TTCGTGACGGCGAAAGAG 57.762 55.556 16.62 0.35 46.11 2.85
1278 1539 1.372499 TTCGTGACGGCGAAAGAGG 60.372 57.895 16.62 0.00 46.11 3.69
1279 1540 2.049433 CGTGACGGCGAAAGAGGT 60.049 61.111 16.62 0.00 0.00 3.85
1280 1541 2.372690 CGTGACGGCGAAAGAGGTG 61.373 63.158 16.62 0.00 0.00 4.00
1281 1542 1.300697 GTGACGGCGAAAGAGGTGT 60.301 57.895 16.62 0.00 0.00 4.16
1282 1543 1.006571 TGACGGCGAAAGAGGTGTC 60.007 57.895 16.62 0.00 0.00 3.67
1283 1544 1.289380 GACGGCGAAAGAGGTGTCT 59.711 57.895 16.62 0.00 32.81 3.41
1284 1545 0.733223 GACGGCGAAAGAGGTGTCTC 60.733 60.000 16.62 0.00 40.25 3.36
1294 1555 1.858091 GAGGTGTCTCTGTGTGTGTG 58.142 55.000 0.00 0.00 37.07 3.82
1295 1556 1.137086 GAGGTGTCTCTGTGTGTGTGT 59.863 52.381 0.00 0.00 37.07 3.72
1296 1557 1.134699 AGGTGTCTCTGTGTGTGTGTG 60.135 52.381 0.00 0.00 0.00 3.82
1584 1845 2.439156 GCCTGAGCCAGCGGATTT 60.439 61.111 0.00 0.00 0.00 2.17
1585 1846 2.476320 GCCTGAGCCAGCGGATTTC 61.476 63.158 0.00 0.00 0.00 2.17
1586 1847 2.176273 CCTGAGCCAGCGGATTTCG 61.176 63.158 0.00 0.00 42.76 3.46
1587 1848 1.448540 CTGAGCCAGCGGATTTCGT 60.449 57.895 0.00 0.00 41.72 3.85
1588 1849 1.699656 CTGAGCCAGCGGATTTCGTG 61.700 60.000 0.00 0.00 41.72 4.35
1589 1850 2.436646 AGCCAGCGGATTTCGTGG 60.437 61.111 0.00 2.65 40.48 4.94
1590 1851 2.746277 GCCAGCGGATTTCGTGGT 60.746 61.111 7.50 0.00 40.03 4.16
1591 1852 1.448893 GCCAGCGGATTTCGTGGTA 60.449 57.895 7.50 0.00 40.03 3.25
1592 1853 1.022451 GCCAGCGGATTTCGTGGTAA 61.022 55.000 7.50 0.00 40.03 2.85
1593 1854 1.663695 CCAGCGGATTTCGTGGTAAT 58.336 50.000 0.00 0.00 41.72 1.89
1594 1855 1.330521 CCAGCGGATTTCGTGGTAATG 59.669 52.381 0.00 0.00 41.72 1.90
1595 1856 1.014352 AGCGGATTTCGTGGTAATGC 58.986 50.000 0.00 0.00 41.72 3.56
1596 1857 0.028902 GCGGATTTCGTGGTAATGCC 59.971 55.000 0.00 0.00 41.72 4.40
1597 1858 1.663695 CGGATTTCGTGGTAATGCCT 58.336 50.000 0.00 0.00 38.35 4.75
1598 1859 1.597663 CGGATTTCGTGGTAATGCCTC 59.402 52.381 0.00 0.00 38.35 4.70
1599 1860 1.947456 GGATTTCGTGGTAATGCCTCC 59.053 52.381 0.00 0.00 38.35 4.30
1600 1861 1.947456 GATTTCGTGGTAATGCCTCCC 59.053 52.381 0.00 0.00 38.35 4.30
1601 1862 0.391927 TTTCGTGGTAATGCCTCCCG 60.392 55.000 0.00 0.00 38.35 5.14
1602 1863 2.203015 CGTGGTAATGCCTCCCGG 60.203 66.667 0.00 0.00 38.35 5.73
1603 1864 2.192175 GTGGTAATGCCTCCCGGG 59.808 66.667 16.85 16.85 38.35 5.73
1604 1865 2.285818 TGGTAATGCCTCCCGGGT 60.286 61.111 22.86 1.40 38.35 5.28
1605 1866 2.192175 GGTAATGCCTCCCGGGTG 59.808 66.667 22.86 19.18 37.43 4.61
1606 1867 2.372074 GGTAATGCCTCCCGGGTGA 61.372 63.158 24.22 5.18 37.43 4.02
1607 1868 1.146263 GTAATGCCTCCCGGGTGAG 59.854 63.158 24.22 13.32 37.43 3.51
1617 1878 2.942641 CCGGGTGAGGGAAGAAAAC 58.057 57.895 0.00 0.00 0.00 2.43
1618 1879 0.109723 CCGGGTGAGGGAAGAAAACA 59.890 55.000 0.00 0.00 0.00 2.83
1619 1880 1.235724 CGGGTGAGGGAAGAAAACAC 58.764 55.000 0.00 0.00 0.00 3.32
1620 1881 1.235724 GGGTGAGGGAAGAAAACACG 58.764 55.000 0.00 0.00 33.08 4.49
1621 1882 0.591659 GGTGAGGGAAGAAAACACGC 59.408 55.000 0.00 0.00 33.08 5.34
1622 1883 0.234884 GTGAGGGAAGAAAACACGCG 59.765 55.000 3.53 3.53 0.00 6.01
1623 1884 1.206831 GAGGGAAGAAAACACGCGC 59.793 57.895 5.73 0.00 0.00 6.86
1624 1885 2.127383 GGGAAGAAAACACGCGCG 60.127 61.111 30.96 30.96 0.00 6.86
1625 1886 2.127383 GGAAGAAAACACGCGCGG 60.127 61.111 35.22 24.36 0.00 6.46
1626 1887 2.127383 GAAGAAAACACGCGCGGG 60.127 61.111 33.55 33.55 0.00 6.13
1627 1888 2.589442 AAGAAAACACGCGCGGGA 60.589 55.556 41.88 0.00 0.00 5.14
1628 1889 2.108344 GAAGAAAACACGCGCGGGAA 62.108 55.000 41.88 0.00 0.00 3.97
1629 1890 2.113131 AAGAAAACACGCGCGGGAAG 62.113 55.000 41.88 24.45 0.00 3.46
1630 1891 3.588891 GAAAACACGCGCGGGAAGG 62.589 63.158 41.88 21.51 0.00 3.46
1640 1901 4.029809 CGGGAAGGGGCGGTTTCT 62.030 66.667 0.00 0.00 0.00 2.52
1641 1902 2.439245 GGGAAGGGGCGGTTTCTT 59.561 61.111 0.00 0.00 0.00 2.52
1642 1903 1.977009 GGGAAGGGGCGGTTTCTTG 60.977 63.158 0.00 0.00 0.00 3.02
1643 1904 1.977009 GGAAGGGGCGGTTTCTTGG 60.977 63.158 0.00 0.00 0.00 3.61
1644 1905 1.074248 GAAGGGGCGGTTTCTTGGA 59.926 57.895 0.00 0.00 0.00 3.53
1645 1906 1.228459 AAGGGGCGGTTTCTTGGAC 60.228 57.895 0.00 0.00 0.00 4.02
1646 1907 2.002018 AAGGGGCGGTTTCTTGGACA 62.002 55.000 0.00 0.00 0.00 4.02
1647 1908 1.529713 GGGGCGGTTTCTTGGACAA 60.530 57.895 0.00 0.00 0.00 3.18
1731 1992 3.838317 GCCCCATCTCAGGTATATGTACA 59.162 47.826 0.00 0.00 32.25 2.90
1850 2163 1.149101 AAGTATATGGTGGGCCTGGG 58.851 55.000 4.53 0.00 35.27 4.45
1851 2164 1.074951 GTATATGGTGGGCCTGGGC 59.925 63.158 12.58 12.58 41.06 5.36
1873 2186 1.742510 GCCCATGTTTGCATGTGCC 60.743 57.895 2.07 0.00 46.19 5.01
1953 2266 8.258007 ACTTCGGATTCACTAATCACTATTTCA 58.742 33.333 0.00 0.00 42.88 2.69
2003 2316 3.428862 CCTTTTGGCTGTTCGACTGTTTT 60.429 43.478 0.00 0.00 0.00 2.43
2051 2364 4.717629 CTCAGGAACGACGCGGCA 62.718 66.667 14.85 0.00 0.00 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.125350 CTTCGAGAGTGCCTGCCC 60.125 66.667 0.00 0.00 0.00 5.36
21 22 2.125350 CCTTCGAGAGTGCCTGCC 60.125 66.667 0.00 0.00 0.00 4.85
22 23 1.965754 ATCCCTTCGAGAGTGCCTGC 61.966 60.000 0.00 0.00 0.00 4.85
23 24 0.103937 GATCCCTTCGAGAGTGCCTG 59.896 60.000 0.00 0.00 0.00 4.85
24 25 0.032615 AGATCCCTTCGAGAGTGCCT 60.033 55.000 0.00 0.00 0.00 4.75
25 26 0.103937 CAGATCCCTTCGAGAGTGCC 59.896 60.000 0.00 0.00 0.00 5.01
53 54 0.606673 AGTTTTCCCTCCTTGCTCGC 60.607 55.000 0.00 0.00 0.00 5.03
60 61 0.695347 CCAGAGCAGTTTTCCCTCCT 59.305 55.000 0.00 0.00 0.00 3.69
88 101 4.365723 TCGACTTAATTAATGGTCTCGGC 58.634 43.478 12.96 0.00 0.00 5.54
94 107 4.395959 TCGGCTCGACTTAATTAATGGT 57.604 40.909 0.00 0.00 0.00 3.55
171 189 2.637025 CGCACACCGTCAAAAGGG 59.363 61.111 0.00 0.00 36.46 3.95
319 341 1.668419 CAGCGAAAAGGTATCCTGGG 58.332 55.000 0.00 0.00 32.13 4.45
322 344 0.462047 CGGCAGCGAAAAGGTATCCT 60.462 55.000 0.00 0.00 33.87 3.24
365 390 4.515361 ACTAGCAGTAGTACGTGAGATGT 58.485 43.478 0.00 0.00 37.76 3.06
371 396 4.112687 ACGCGACTAGCAGTAGTACGTG 62.113 54.545 15.93 11.73 44.44 4.49
403 428 1.087771 GGCACGATAACAGAACGGGG 61.088 60.000 0.00 0.00 0.00 5.73
411 436 2.479049 GCGTAGAAGAGGCACGATAACA 60.479 50.000 0.00 0.00 38.85 2.41
412 437 2.117910 GCGTAGAAGAGGCACGATAAC 58.882 52.381 0.00 0.00 38.85 1.89
413 438 1.268386 CGCGTAGAAGAGGCACGATAA 60.268 52.381 0.00 0.00 38.95 1.75
414 439 0.306840 CGCGTAGAAGAGGCACGATA 59.693 55.000 0.00 0.00 38.95 2.92
415 440 1.064296 CGCGTAGAAGAGGCACGAT 59.936 57.895 0.00 0.00 38.95 3.73
515 540 6.402118 GCATGCTCGTGTGTATTCTAGAAAAA 60.402 38.462 11.37 0.00 0.00 1.94
516 541 5.063438 GCATGCTCGTGTGTATTCTAGAAAA 59.937 40.000 11.37 0.00 0.00 2.29
517 542 4.566759 GCATGCTCGTGTGTATTCTAGAAA 59.433 41.667 11.37 0.00 0.00 2.52
518 543 4.112634 GCATGCTCGTGTGTATTCTAGAA 58.887 43.478 11.37 7.82 0.00 2.10
519 544 3.706698 GCATGCTCGTGTGTATTCTAGA 58.293 45.455 11.37 0.00 0.00 2.43
520 545 2.469147 CGCATGCTCGTGTGTATTCTAG 59.531 50.000 17.13 0.00 0.00 2.43
521 546 2.159296 ACGCATGCTCGTGTGTATTCTA 60.159 45.455 17.13 0.00 40.76 2.10
522 547 1.280982 CGCATGCTCGTGTGTATTCT 58.719 50.000 17.13 0.00 0.00 2.40
523 548 0.999406 ACGCATGCTCGTGTGTATTC 59.001 50.000 17.13 0.00 40.76 1.75
525 550 2.509052 ATACGCATGCTCGTGTGTAT 57.491 45.000 17.13 17.72 45.56 2.29
526 551 1.133407 TGATACGCATGCTCGTGTGTA 59.867 47.619 17.13 15.25 45.78 2.90
527 552 0.108851 TGATACGCATGCTCGTGTGT 60.109 50.000 17.13 12.22 43.21 3.72
528 553 1.211743 ATGATACGCATGCTCGTGTG 58.788 50.000 17.13 0.80 43.21 3.82
529 554 2.793278 TATGATACGCATGCTCGTGT 57.207 45.000 17.13 8.68 43.21 4.49
530 555 5.516339 TGAATATATGATACGCATGCTCGTG 59.484 40.000 17.13 2.03 43.21 4.35
532 557 6.760161 ATGAATATATGATACGCATGCTCG 57.240 37.500 17.13 3.27 37.87 5.03
533 558 9.468532 TTCTATGAATATATGATACGCATGCTC 57.531 33.333 17.13 7.33 37.87 4.26
534 559 9.473640 CTTCTATGAATATATGATACGCATGCT 57.526 33.333 17.13 5.50 37.87 3.79
535 560 9.468532 TCTTCTATGAATATATGATACGCATGC 57.531 33.333 7.91 7.91 37.87 4.06
550 575 9.282569 GTTATCTTGGCATCTTCTTCTATGAAT 57.717 33.333 0.00 0.00 0.00 2.57
551 576 7.716998 GGTTATCTTGGCATCTTCTTCTATGAA 59.283 37.037 0.00 0.00 0.00 2.57
553 578 6.994496 TGGTTATCTTGGCATCTTCTTCTATG 59.006 38.462 0.00 0.00 0.00 2.23
554 579 7.141758 TGGTTATCTTGGCATCTTCTTCTAT 57.858 36.000 0.00 0.00 0.00 1.98
555 580 6.560003 TGGTTATCTTGGCATCTTCTTCTA 57.440 37.500 0.00 0.00 0.00 2.10
556 581 5.441718 TGGTTATCTTGGCATCTTCTTCT 57.558 39.130 0.00 0.00 0.00 2.85
557 582 6.515272 TTTGGTTATCTTGGCATCTTCTTC 57.485 37.500 0.00 0.00 0.00 2.87
558 583 6.916360 TTTTGGTTATCTTGGCATCTTCTT 57.084 33.333 0.00 0.00 0.00 2.52
560 585 9.822185 ATTATTTTTGGTTATCTTGGCATCTTC 57.178 29.630 0.00 0.00 0.00 2.87
561 586 9.603921 CATTATTTTTGGTTATCTTGGCATCTT 57.396 29.630 0.00 0.00 0.00 2.40
562 587 8.980596 TCATTATTTTTGGTTATCTTGGCATCT 58.019 29.630 0.00 0.00 0.00 2.90
563 588 9.768662 ATCATTATTTTTGGTTATCTTGGCATC 57.231 29.630 0.00 0.00 0.00 3.91
600 625 2.833794 TGAGAAGAGAAACCGTGTTGG 58.166 47.619 0.00 0.00 46.41 3.77
601 626 5.424121 AAATGAGAAGAGAAACCGTGTTG 57.576 39.130 0.00 0.00 0.00 3.33
602 627 6.018180 GTGTAAATGAGAAGAGAAACCGTGTT 60.018 38.462 0.00 0.00 0.00 3.32
603 628 5.465724 GTGTAAATGAGAAGAGAAACCGTGT 59.534 40.000 0.00 0.00 0.00 4.49
604 629 5.107065 GGTGTAAATGAGAAGAGAAACCGTG 60.107 44.000 0.00 0.00 0.00 4.94
605 630 4.995487 GGTGTAAATGAGAAGAGAAACCGT 59.005 41.667 0.00 0.00 0.00 4.83
606 631 4.994852 TGGTGTAAATGAGAAGAGAAACCG 59.005 41.667 0.00 0.00 0.00 4.44
607 632 6.072452 CCTTGGTGTAAATGAGAAGAGAAACC 60.072 42.308 0.00 0.00 0.00 3.27
608 633 6.710744 TCCTTGGTGTAAATGAGAAGAGAAAC 59.289 38.462 0.00 0.00 0.00 2.78
609 634 6.837312 TCCTTGGTGTAAATGAGAAGAGAAA 58.163 36.000 0.00 0.00 0.00 2.52
610 635 6.270000 TCTCCTTGGTGTAAATGAGAAGAGAA 59.730 38.462 0.00 0.00 0.00 2.87
611 636 5.780282 TCTCCTTGGTGTAAATGAGAAGAGA 59.220 40.000 0.00 0.00 0.00 3.10
612 637 6.042638 TCTCCTTGGTGTAAATGAGAAGAG 57.957 41.667 0.00 0.00 0.00 2.85
613 638 6.627087 ATCTCCTTGGTGTAAATGAGAAGA 57.373 37.500 0.00 0.00 32.92 2.87
614 639 7.010552 CGTTATCTCCTTGGTGTAAATGAGAAG 59.989 40.741 0.00 0.00 32.92 2.85
615 640 6.816640 CGTTATCTCCTTGGTGTAAATGAGAA 59.183 38.462 0.00 0.00 32.92 2.87
616 641 6.153851 TCGTTATCTCCTTGGTGTAAATGAGA 59.846 38.462 0.00 0.00 33.39 3.27
617 642 6.338146 TCGTTATCTCCTTGGTGTAAATGAG 58.662 40.000 0.00 0.00 0.00 2.90
618 643 6.288941 TCGTTATCTCCTTGGTGTAAATGA 57.711 37.500 0.00 0.00 0.00 2.57
619 644 5.523916 CCTCGTTATCTCCTTGGTGTAAATG 59.476 44.000 0.00 0.00 0.00 2.32
620 645 5.424252 TCCTCGTTATCTCCTTGGTGTAAAT 59.576 40.000 0.00 0.00 0.00 1.40
621 646 4.773674 TCCTCGTTATCTCCTTGGTGTAAA 59.226 41.667 0.00 0.00 0.00 2.01
622 647 4.346730 TCCTCGTTATCTCCTTGGTGTAA 58.653 43.478 0.00 0.00 0.00 2.41
623 648 3.972133 TCCTCGTTATCTCCTTGGTGTA 58.028 45.455 0.00 0.00 0.00 2.90
624 649 2.816411 TCCTCGTTATCTCCTTGGTGT 58.184 47.619 0.00 0.00 0.00 4.16
625 650 3.887621 TTCCTCGTTATCTCCTTGGTG 57.112 47.619 0.00 0.00 0.00 4.17
626 651 5.437191 AATTTCCTCGTTATCTCCTTGGT 57.563 39.130 0.00 0.00 0.00 3.67
627 652 5.880332 TCAAATTTCCTCGTTATCTCCTTGG 59.120 40.000 0.00 0.00 0.00 3.61
628 653 6.595716 AGTCAAATTTCCTCGTTATCTCCTTG 59.404 38.462 0.00 0.00 0.00 3.61
629 654 6.712276 AGTCAAATTTCCTCGTTATCTCCTT 58.288 36.000 0.00 0.00 0.00 3.36
699 724 0.036952 AGTGGCTTCGACACATCTGG 60.037 55.000 7.32 0.00 45.35 3.86
710 735 2.030805 GGTTTGTGTCATGAGTGGCTTC 60.031 50.000 0.00 0.00 0.00 3.86
721 746 1.885388 CGTGGCGAGGTTTGTGTCA 60.885 57.895 0.00 0.00 0.00 3.58
731 756 3.362399 ATGAGTCTGCCGTGGCGAG 62.362 63.158 6.37 5.31 45.51 5.03
735 760 0.459237 GTGAGATGAGTCTGCCGTGG 60.459 60.000 0.00 0.00 33.97 4.94
737 762 0.529833 CAGTGAGATGAGTCTGCCGT 59.470 55.000 0.00 0.00 33.97 5.68
738 763 0.813821 TCAGTGAGATGAGTCTGCCG 59.186 55.000 0.00 0.00 33.97 5.69
739 764 1.468908 CGTCAGTGAGATGAGTCTGCC 60.469 57.143 0.00 0.00 35.12 4.85
741 766 3.427368 CCTTCGTCAGTGAGATGAGTCTG 60.427 52.174 0.00 0.00 42.92 3.51
743 768 2.490115 ACCTTCGTCAGTGAGATGAGTC 59.510 50.000 0.00 0.00 42.92 3.36
744 769 2.490115 GACCTTCGTCAGTGAGATGAGT 59.510 50.000 0.00 0.00 42.92 3.41
745 770 2.489722 TGACCTTCGTCAGTGAGATGAG 59.510 50.000 0.00 0.00 44.20 2.90
746 771 2.514803 TGACCTTCGTCAGTGAGATGA 58.485 47.619 0.00 0.00 44.20 2.92
755 780 1.960689 TGATCAGTGTGACCTTCGTCA 59.039 47.619 0.00 0.00 46.91 4.35
756 781 2.724977 TGATCAGTGTGACCTTCGTC 57.275 50.000 0.00 0.00 39.66 4.20
759 784 6.317789 TCATTTTTGATCAGTGTGACCTTC 57.682 37.500 0.00 0.00 0.00 3.46
762 787 7.147312 TCAAATCATTTTTGATCAGTGTGACC 58.853 34.615 0.00 0.00 33.90 4.02
763 788 8.578308 TTCAAATCATTTTTGATCAGTGTGAC 57.422 30.769 0.00 0.00 38.12 3.67
764 789 9.414295 GATTCAAATCATTTTTGATCAGTGTGA 57.586 29.630 0.00 0.27 38.12 3.58
765 790 9.419297 AGATTCAAATCATTTTTGATCAGTGTG 57.581 29.630 5.59 0.00 38.12 3.82
766 791 9.635520 GAGATTCAAATCATTTTTGATCAGTGT 57.364 29.630 5.59 0.00 38.12 3.55
767 792 9.084164 GGAGATTCAAATCATTTTTGATCAGTG 57.916 33.333 5.59 0.00 38.12 3.66
768 793 9.032624 AGGAGATTCAAATCATTTTTGATCAGT 57.967 29.630 5.59 0.00 38.12 3.41
769 794 9.871238 AAGGAGATTCAAATCATTTTTGATCAG 57.129 29.630 5.59 0.00 38.12 2.90
774 799 9.924650 AGAAGAAGGAGATTCAAATCATTTTTG 57.075 29.630 5.59 0.00 40.67 2.44
779 1026 6.054295 CGGAGAAGAAGGAGATTCAAATCAT 58.946 40.000 5.59 0.00 40.67 2.45
781 1028 4.272261 GCGGAGAAGAAGGAGATTCAAATC 59.728 45.833 0.00 0.00 40.67 2.17
782 1029 4.195416 GCGGAGAAGAAGGAGATTCAAAT 58.805 43.478 0.00 0.00 40.67 2.32
785 1032 1.135139 CGCGGAGAAGAAGGAGATTCA 59.865 52.381 0.00 0.00 40.67 2.57
789 1036 0.322636 AGTCGCGGAGAAGAAGGAGA 60.323 55.000 6.13 0.00 0.00 3.71
791 1038 0.894184 ACAGTCGCGGAGAAGAAGGA 60.894 55.000 6.13 0.00 0.00 3.36
795 1042 1.909141 GACGACAGTCGCGGAGAAGA 61.909 60.000 23.09 0.00 45.12 2.87
812 1059 4.288670 TCGGTTTCGACATAGAGATGAC 57.711 45.455 0.00 0.00 40.88 3.06
825 1072 4.151070 CAATGTGAAGTTCATCGGTTTCG 58.849 43.478 9.18 0.00 37.82 3.46
826 1073 4.475944 CCAATGTGAAGTTCATCGGTTTC 58.524 43.478 9.18 0.00 0.00 2.78
827 1074 3.305335 GCCAATGTGAAGTTCATCGGTTT 60.305 43.478 9.18 0.00 0.00 3.27
828 1075 2.228822 GCCAATGTGAAGTTCATCGGTT 59.771 45.455 9.18 0.00 0.00 4.44
830 1077 1.133025 GGCCAATGTGAAGTTCATCGG 59.867 52.381 9.18 8.40 0.00 4.18
831 1078 2.086869 AGGCCAATGTGAAGTTCATCG 58.913 47.619 9.18 0.00 0.00 3.84
832 1079 3.084039 TGAGGCCAATGTGAAGTTCATC 58.916 45.455 9.18 3.86 0.00 2.92
834 1081 2.158623 ACTGAGGCCAATGTGAAGTTCA 60.159 45.455 5.01 0.08 0.00 3.18
835 1082 2.485814 GACTGAGGCCAATGTGAAGTTC 59.514 50.000 5.01 0.00 0.00 3.01
836 1083 2.107204 AGACTGAGGCCAATGTGAAGTT 59.893 45.455 5.01 0.00 0.00 2.66
837 1084 1.701847 AGACTGAGGCCAATGTGAAGT 59.298 47.619 5.01 0.00 0.00 3.01
838 1085 2.354259 GAGACTGAGGCCAATGTGAAG 58.646 52.381 5.01 0.00 0.00 3.02
839 1086 1.338105 CGAGACTGAGGCCAATGTGAA 60.338 52.381 5.01 0.00 0.00 3.18
841 1088 0.247460 TCGAGACTGAGGCCAATGTG 59.753 55.000 5.01 0.00 0.00 3.21
842 1089 1.137872 GATCGAGACTGAGGCCAATGT 59.862 52.381 5.01 0.00 0.00 2.71
843 1090 1.411977 AGATCGAGACTGAGGCCAATG 59.588 52.381 5.01 0.00 0.00 2.82
845 1092 1.561643 AAGATCGAGACTGAGGCCAA 58.438 50.000 5.01 0.00 0.00 4.52
847 1094 1.478510 TCAAAGATCGAGACTGAGGCC 59.521 52.381 0.00 0.00 0.00 5.19
848 1095 2.425312 TCTCAAAGATCGAGACTGAGGC 59.575 50.000 13.48 0.00 34.59 4.70
849 1096 4.157656 ACTTCTCAAAGATCGAGACTGAGG 59.842 45.833 13.48 4.88 39.21 3.86
850 1097 5.309323 ACTTCTCAAAGATCGAGACTGAG 57.691 43.478 9.25 9.25 39.21 3.35
851 1098 5.241728 TGAACTTCTCAAAGATCGAGACTGA 59.758 40.000 0.00 0.00 39.21 3.41
852 1099 5.465051 TGAACTTCTCAAAGATCGAGACTG 58.535 41.667 0.00 0.00 39.21 3.51
853 1100 5.713792 TGAACTTCTCAAAGATCGAGACT 57.286 39.130 0.00 0.00 39.21 3.24
854 1101 5.923684 ACTTGAACTTCTCAAAGATCGAGAC 59.076 40.000 15.56 0.00 43.54 3.36
855 1102 6.090483 ACTTGAACTTCTCAAAGATCGAGA 57.910 37.500 15.56 0.00 43.54 4.04
856 1103 5.347364 GGACTTGAACTTCTCAAAGATCGAG 59.653 44.000 9.78 9.78 45.07 4.04
857 1104 5.230942 GGACTTGAACTTCTCAAAGATCGA 58.769 41.667 0.00 0.00 43.54 3.59
859 1106 4.390297 CGGGACTTGAACTTCTCAAAGATC 59.610 45.833 0.00 0.00 43.54 2.75
860 1107 4.040461 TCGGGACTTGAACTTCTCAAAGAT 59.960 41.667 0.00 0.00 43.54 2.40
861 1108 3.386726 TCGGGACTTGAACTTCTCAAAGA 59.613 43.478 0.00 0.00 43.54 2.52
862 1109 3.728845 TCGGGACTTGAACTTCTCAAAG 58.271 45.455 0.00 0.00 43.54 2.77
863 1110 3.830744 TCGGGACTTGAACTTCTCAAA 57.169 42.857 0.00 0.00 43.54 2.69
864 1111 4.351874 AATCGGGACTTGAACTTCTCAA 57.648 40.909 0.00 0.00 41.93 3.02
866 1113 3.437049 CCAAATCGGGACTTGAACTTCTC 59.563 47.826 0.00 0.00 0.00 2.87
867 1114 3.181443 ACCAAATCGGGACTTGAACTTCT 60.181 43.478 0.00 0.00 40.22 2.85
868 1115 3.058224 CACCAAATCGGGACTTGAACTTC 60.058 47.826 0.00 0.00 40.22 3.01
869 1116 2.884639 CACCAAATCGGGACTTGAACTT 59.115 45.455 0.00 0.00 40.22 2.66
870 1117 2.504367 CACCAAATCGGGACTTGAACT 58.496 47.619 0.00 0.00 40.22 3.01
871 1118 1.539827 CCACCAAATCGGGACTTGAAC 59.460 52.381 0.00 0.00 40.22 3.18
872 1119 1.904287 CCACCAAATCGGGACTTGAA 58.096 50.000 0.00 0.00 40.22 2.69
873 1120 0.608035 GCCACCAAATCGGGACTTGA 60.608 55.000 0.00 0.00 40.22 3.02
874 1121 1.595093 GGCCACCAAATCGGGACTTG 61.595 60.000 0.00 0.00 40.22 3.16
892 1139 4.619227 ACGTGTTGGTGGCTCGGG 62.619 66.667 0.00 0.00 0.00 5.14
900 1147 2.672760 GCCTTTGACAAAACGTGTTGGT 60.673 45.455 22.10 8.19 41.96 3.67
907 1154 0.593773 CCCACGCCTTTGACAAAACG 60.594 55.000 17.03 17.03 0.00 3.60
916 1163 4.344865 ATCACCGCCCACGCCTTT 62.345 61.111 0.00 0.00 38.22 3.11
921 1168 2.815211 CAGACATCACCGCCCACG 60.815 66.667 0.00 0.00 39.67 4.94
923 1170 4.408821 GCCAGACATCACCGCCCA 62.409 66.667 0.00 0.00 0.00 5.36
942 1189 2.535012 TTGGATCAGCACGTACAACA 57.465 45.000 0.00 0.00 0.00 3.33
954 1201 0.390124 GGGCGTACGGTATTGGATCA 59.610 55.000 18.39 0.00 0.00 2.92
955 1202 0.677842 AGGGCGTACGGTATTGGATC 59.322 55.000 18.39 0.00 0.00 3.36
957 1204 1.727511 CGAGGGCGTACGGTATTGGA 61.728 60.000 18.39 0.00 0.00 3.53
991 1238 2.124860 GACCCCCATCGTTTCCCG 60.125 66.667 0.00 0.00 38.13 5.14
1001 1248 3.908904 TTCATCGACGGGACCCCCA 62.909 63.158 4.46 0.00 45.83 4.96
1003 1250 1.227556 CATTCATCGACGGGACCCC 60.228 63.158 4.46 0.00 0.00 4.95
1005 1252 0.174845 TGACATTCATCGACGGGACC 59.825 55.000 0.00 0.00 0.00 4.46
1012 1259 3.130340 TCGACTTCCATGACATTCATCGA 59.870 43.478 0.00 0.00 34.28 3.59
1013 1260 3.447742 TCGACTTCCATGACATTCATCG 58.552 45.455 0.00 0.00 34.28 3.84
1016 1263 3.197549 TCCATCGACTTCCATGACATTCA 59.802 43.478 0.00 0.00 0.00 2.57
1020 1267 1.134699 GCTCCATCGACTTCCATGACA 60.135 52.381 0.00 0.00 0.00 3.58
1024 1271 0.755686 GGAGCTCCATCGACTTCCAT 59.244 55.000 28.43 0.00 35.64 3.41
1031 1278 1.824329 GACCGAGGAGCTCCATCGA 60.824 63.158 35.81 0.00 38.23 3.59
1033 1280 2.725008 CGACCGAGGAGCTCCATC 59.275 66.667 33.90 24.52 38.89 3.51
1061 1308 0.321653 GTCCTCAACCTCCGCAATGT 60.322 55.000 0.00 0.00 0.00 2.71
1071 1318 0.109226 CTCTTCGGTCGTCCTCAACC 60.109 60.000 0.00 0.00 0.00 3.77
1097 1357 1.764571 AAGCGGCAGTTCCACTACCA 61.765 55.000 1.45 0.00 30.84 3.25
1099 1359 0.320421 TCAAGCGGCAGTTCCACTAC 60.320 55.000 1.45 0.00 34.01 2.73
1100 1360 0.394938 TTCAAGCGGCAGTTCCACTA 59.605 50.000 1.45 0.00 34.01 2.74
1137 1397 4.914983 TCATATCTGCCTCCATGAAATCC 58.085 43.478 0.00 0.00 0.00 3.01
1144 1404 3.418995 GCACAATCATATCTGCCTCCAT 58.581 45.455 0.00 0.00 0.00 3.41
1152 1412 2.362397 AGTCGTCGGCACAATCATATCT 59.638 45.455 0.00 0.00 0.00 1.98
1157 1417 0.032815 TTCAGTCGTCGGCACAATCA 59.967 50.000 0.00 0.00 0.00 2.57
1160 1420 0.318699 CTCTTCAGTCGTCGGCACAA 60.319 55.000 0.00 0.00 0.00 3.33
1167 1427 0.172352 CCTGCCTCTCTTCAGTCGTC 59.828 60.000 0.00 0.00 0.00 4.20
1173 1433 1.306482 CCTCCCCTGCCTCTCTTCA 60.306 63.158 0.00 0.00 0.00 3.02
1183 1443 2.774351 GATCCACCCCCTCCCCTG 60.774 72.222 0.00 0.00 0.00 4.45
1187 1447 2.435693 CGACAGATCCACCCCCTCC 61.436 68.421 0.00 0.00 0.00 4.30
1203 1463 1.228033 CCATCAGCCATCCATGCGA 60.228 57.895 0.00 0.00 0.00 5.10
1215 1475 0.465097 AAGGAATCTGGCGCCATCAG 60.465 55.000 32.87 19.49 0.00 2.90
1216 1476 0.836606 TAAGGAATCTGGCGCCATCA 59.163 50.000 32.87 20.65 0.00 3.07
1219 1479 0.107703 CTGTAAGGAATCTGGCGCCA 60.108 55.000 30.59 30.59 0.00 5.69
1246 1507 1.466950 TCACGAAATTCGATTGCCCAC 59.533 47.619 22.92 0.00 43.74 4.61
1255 1516 3.454574 TCGCCGTCACGAAATTCG 58.545 55.556 14.35 14.35 46.93 3.34
1262 1523 2.049433 ACCTCTTTCGCCGTCACG 60.049 61.111 0.00 0.00 0.00 4.35
1266 1527 1.289380 GAGACACCTCTTTCGCCGT 59.711 57.895 0.00 0.00 36.50 5.68
1267 1528 4.170723 GAGACACCTCTTTCGCCG 57.829 61.111 0.00 0.00 36.50 6.46
1275 1536 1.137086 ACACACACACAGAGACACCTC 59.863 52.381 0.00 0.00 39.72 3.85
1276 1537 1.134699 CACACACACACAGAGACACCT 60.135 52.381 0.00 0.00 0.00 4.00
1277 1538 1.290203 CACACACACACAGAGACACC 58.710 55.000 0.00 0.00 0.00 4.16
1567 1828 2.439156 AAATCCGCTGGCTCAGGC 60.439 61.111 0.00 0.00 37.82 4.85
1568 1829 2.176273 CGAAATCCGCTGGCTCAGG 61.176 63.158 4.65 0.00 31.21 3.86
1569 1830 1.448540 ACGAAATCCGCTGGCTCAG 60.449 57.895 0.00 0.00 43.32 3.35
1570 1831 1.741401 CACGAAATCCGCTGGCTCA 60.741 57.895 0.00 0.00 43.32 4.26
1571 1832 2.464459 CCACGAAATCCGCTGGCTC 61.464 63.158 0.00 0.00 43.32 4.70
1572 1833 1.895020 TACCACGAAATCCGCTGGCT 61.895 55.000 0.00 0.00 43.32 4.75
1573 1834 1.022451 TTACCACGAAATCCGCTGGC 61.022 55.000 0.00 0.00 43.32 4.85
1574 1835 1.330521 CATTACCACGAAATCCGCTGG 59.669 52.381 0.00 0.00 43.32 4.85
1575 1836 1.268032 GCATTACCACGAAATCCGCTG 60.268 52.381 0.00 0.00 43.32 5.18
1576 1837 1.014352 GCATTACCACGAAATCCGCT 58.986 50.000 0.00 0.00 43.32 5.52
1577 1838 0.028902 GGCATTACCACGAAATCCGC 59.971 55.000 0.00 0.00 43.32 5.54
1578 1839 1.597663 GAGGCATTACCACGAAATCCG 59.402 52.381 0.00 0.00 43.14 4.18
1579 1840 1.947456 GGAGGCATTACCACGAAATCC 59.053 52.381 0.00 0.00 43.14 3.01
1580 1841 1.947456 GGGAGGCATTACCACGAAATC 59.053 52.381 0.00 0.00 43.14 2.17
1581 1842 1.745827 CGGGAGGCATTACCACGAAAT 60.746 52.381 0.00 0.00 43.14 2.17
1582 1843 0.391927 CGGGAGGCATTACCACGAAA 60.392 55.000 0.00 0.00 43.14 3.46
1583 1844 1.219664 CGGGAGGCATTACCACGAA 59.780 57.895 0.00 0.00 43.14 3.85
1584 1845 2.897207 CGGGAGGCATTACCACGA 59.103 61.111 0.00 0.00 43.14 4.35
1598 1859 0.608308 GTTTTCTTCCCTCACCCGGG 60.608 60.000 22.25 22.25 46.13 5.73
1599 1860 0.109723 TGTTTTCTTCCCTCACCCGG 59.890 55.000 0.00 0.00 0.00 5.73
1600 1861 1.235724 GTGTTTTCTTCCCTCACCCG 58.764 55.000 0.00 0.00 0.00 5.28
1601 1862 1.235724 CGTGTTTTCTTCCCTCACCC 58.764 55.000 0.00 0.00 0.00 4.61
1602 1863 0.591659 GCGTGTTTTCTTCCCTCACC 59.408 55.000 0.00 0.00 0.00 4.02
1603 1864 0.234884 CGCGTGTTTTCTTCCCTCAC 59.765 55.000 0.00 0.00 0.00 3.51
1604 1865 1.503818 GCGCGTGTTTTCTTCCCTCA 61.504 55.000 8.43 0.00 0.00 3.86
1605 1866 1.206831 GCGCGTGTTTTCTTCCCTC 59.793 57.895 8.43 0.00 0.00 4.30
1606 1867 2.604174 CGCGCGTGTTTTCTTCCCT 61.604 57.895 24.19 0.00 0.00 4.20
1607 1868 2.127383 CGCGCGTGTTTTCTTCCC 60.127 61.111 24.19 0.00 0.00 3.97
1608 1869 2.127383 CCGCGCGTGTTTTCTTCC 60.127 61.111 29.95 0.00 0.00 3.46
1609 1870 2.108344 TTCCCGCGCGTGTTTTCTTC 62.108 55.000 29.95 0.00 0.00 2.87
1610 1871 2.113131 CTTCCCGCGCGTGTTTTCTT 62.113 55.000 29.95 0.00 0.00 2.52
1611 1872 2.589442 TTCCCGCGCGTGTTTTCT 60.589 55.556 29.95 0.00 0.00 2.52
1612 1873 2.127383 CTTCCCGCGCGTGTTTTC 60.127 61.111 29.95 0.00 0.00 2.29
1613 1874 3.656045 CCTTCCCGCGCGTGTTTT 61.656 61.111 29.95 0.00 0.00 2.43
1623 1884 3.562732 AAGAAACCGCCCCTTCCCG 62.563 63.158 0.00 0.00 0.00 5.14
1624 1885 1.977009 CAAGAAACCGCCCCTTCCC 60.977 63.158 0.00 0.00 0.00 3.97
1625 1886 1.977009 CCAAGAAACCGCCCCTTCC 60.977 63.158 0.00 0.00 0.00 3.46
1626 1887 1.074248 TCCAAGAAACCGCCCCTTC 59.926 57.895 0.00 0.00 0.00 3.46
1627 1888 1.228459 GTCCAAGAAACCGCCCCTT 60.228 57.895 0.00 0.00 0.00 3.95
1628 1889 2.002018 TTGTCCAAGAAACCGCCCCT 62.002 55.000 0.00 0.00 0.00 4.79
1629 1890 1.529713 TTGTCCAAGAAACCGCCCC 60.530 57.895 0.00 0.00 0.00 5.80
1630 1891 1.658114 GTTGTCCAAGAAACCGCCC 59.342 57.895 0.00 0.00 0.00 6.13
1631 1892 1.658114 GGTTGTCCAAGAAACCGCC 59.342 57.895 0.00 0.00 36.75 6.13
1634 1895 1.328279 CCCTGGTTGTCCAAGAAACC 58.672 55.000 0.00 0.00 43.81 3.27
1635 1896 0.673985 GCCCTGGTTGTCCAAGAAAC 59.326 55.000 0.00 0.00 43.81 2.78
1636 1897 0.469144 GGCCCTGGTTGTCCAAGAAA 60.469 55.000 0.00 0.00 43.81 2.52
1637 1898 1.152830 GGCCCTGGTTGTCCAAGAA 59.847 57.895 0.00 0.00 43.81 2.52
1638 1899 2.843545 GGCCCTGGTTGTCCAAGA 59.156 61.111 0.00 0.00 43.81 3.02
1639 1900 2.672996 CGGCCCTGGTTGTCCAAG 60.673 66.667 0.00 0.00 43.81 3.61
1640 1901 4.278513 CCGGCCCTGGTTGTCCAA 62.279 66.667 0.00 0.00 43.81 3.53
1642 1903 4.717313 GACCGGCCCTGGTTGTCC 62.717 72.222 0.00 0.00 44.01 4.02
1643 1904 4.717313 GGACCGGCCCTGGTTGTC 62.717 72.222 0.00 0.00 44.01 3.18
1731 1992 4.946157 ACTTGTATGCCTGTACGTACTAGT 59.054 41.667 25.12 9.32 40.73 2.57
1777 2038 1.886777 GAGGCGCTGAGATTGGCTC 60.887 63.158 7.64 7.39 46.03 4.70
1850 2163 2.662070 ATGCAAACATGGGCCAGGC 61.662 57.895 19.71 13.41 34.35 4.85
1851 2164 3.716381 ATGCAAACATGGGCCAGG 58.284 55.556 18.06 18.06 34.35 4.45
1871 2184 0.616111 TTCCTCTCCAGTCTCCAGGC 60.616 60.000 0.00 0.00 0.00 4.85
1873 2186 2.235898 CCTTTTCCTCTCCAGTCTCCAG 59.764 54.545 0.00 0.00 0.00 3.86
1921 2234 7.033791 GTGATTAGTGAATCCGAAGTTACAGA 58.966 38.462 0.00 0.00 40.81 3.41
1953 2266 3.604875 ACAACCGATCCGAAGTTACAT 57.395 42.857 0.00 0.00 0.00 2.29
1995 2308 6.424207 AGAGGATTAGACGAACAAAAACAGTC 59.576 38.462 0.00 0.00 0.00 3.51
2003 2316 4.458295 AGTCGAAGAGGATTAGACGAACAA 59.542 41.667 0.00 0.00 36.95 2.83
2051 2364 0.108138 GAGATGTACCTGCCGCAGTT 60.108 55.000 18.98 7.71 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.