>input_sequence_86677
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----------------------------------------------ATGGGGGTCCCGTCGATGAATGTCATGGAAGTCG
ATGGAGCTCCTCGGTCGGTGGCGGGCAACATTGCGGAG-------------GTTGAGGACGACCGAAGAGGAGAGATGGT
AGTGGAACTGCCGCTTGAAGGGTCAACGCGGGCTGCGGATTTCATGGAGGCAGATATGATTGTGCCGACGACTGAAGAGA
GGCAGGGGAGGGGGTGGATCTGTCGCATGGATGGCTGA------------------------------------------
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>chr2A_1_TraesCS2A01G253400
AAGGGACACGGCGGCACGCAGGGCAGGCACTCTCGAAGGGATCTGGCGCGAGCGCGAGCAAGGAGGGAAAA---------
---CTGCTCTGGGGTCGGACGCCGAGACCATTAATTAAGTCGAGCCGAAGCGGAGCTACCGCGGAGACCGGGATCTGCGG
AGCG-----GGGCCCACAGTGGAACGACCCCTTTTGACGGTGTGCGTGCGTGGAGGCGGGGCAGTGAGCTGCACTTGAGC
CGCGGGTTTGGGGTCCGCGAGGGAGAA----AGAGAGAGAGGACCCGAGGCCGCTGGTTTTTGGCGGGTGCGGCTCCGGC
GACACCGCGGGAAAGAAAAGCCCA---GGATACCTTTTCGCTGCCGTTTCACGTTTTGAACCCCCACCCACATCTCACGT
ACTACTGCTAGTCGCGTTGAGGGTTCCCCCCGTTCTGTTATCGTGCCTCTTCTACGCGTCAAAGCACCTTCAACTTCTCT
ACAAACATAATACTACTATATGGTAACCAGCACTGTCATAAAAAATAATGTTAATATTTTTTTTCTAGAATACACACGAG
CATGCGTATCATATATTCATAGAAGAAGATGCCAAGATAACCAAAAATAATGATAATATGATAACCAACACGGTTTCTCT
TCTCATTTACACCAAGGAGATAACGAGGAAATTTGACTTTTTGCTAGATTTCACATGGATCTTGCTAGCCATCCTTTTTA
AGCCCAGATGTGTCGAAGCCACTCATGACACAAACCTCGCCACGGCAGACTCATCTCACTGACGAAGGTCACACTGATC-
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-------------------------------------------------------------AAAAATGATTTGAATCTCC
TTCTTCTCCGCGACTGTCGTCATCTCTATGTCGAAACCGATGAACTTCACATTGGCCTCAGTCTCGATCTTTGAGAAGTT
CAAGTCCCGATTTGGTGGCCCGAGCCACCAACACGTTTTGTCAAAGGCGTGGGCGGTGATGTCTGGCTTGTTGTACGTGC
TGATCCAATACCGTACGCCCTCGTGCGTGATCTCATTCGGGAAACGATGGGGGTCCCGTCGATGAATGTCATGGAAGTCG
ATGGAGCTCCTCGGTCGGTGGCGGGCAACATTGCGGAG-------------GTTGAGGACGACCGAAGAGGAGAGATGGT
AGTGGAACTGCCGCTTGAAGGGTCAACGCGGGCTGCGGATTTCATGGAGGCAGATATGATTGTGCCGACGACTGAAGAGA
GGCAGGGGAGGGGGTGGATCTGTCGCATGGATGGCTGATGGCGCCAGATTCCTTACAGGT-GGGGCGTGGGCAATCGAAT
TTCGTGACGGCGAAAGAGGTGTCTCTGTGTGTGTGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGCGGTGCGGTGGCCTGAGCCAGCG
GATTTCGTGGTAATGCCTCCCGGGTGAGGGAAGAAAACACGCGCGGGAAGGGGCGGTTTCTTGGACAACCAGGGCCGGTC
CTGGGGCAGGGCGAACGGGGCGGCCGCCCCGGGCCCCCGAAAGTCAGGGGCCCCATCTCAGGTATATGTACACTAGTACG
TACAGGCATACAAGTCTTCGAGTGAAAAACACAATTGGAGCCAATCTCAGCGCCTCGCTCAGCCTCTGGTAC--------
------------------------------------------GCTAGTC--TAGGAAACTAAAAAGTATATGGTGGGCCT
GGGCCTGGCCCATGTTTGCATGTGCCTGGAGACTGGAGAGGAAAAGGAATCTTCGATTCACTAATCACTATTTTCTGTAA
CTTCGGATTCACTAATCACTATTTCATGTAACTTCGGATCGGTTGTTCCCTGCCCTTTTGGCTGTTCGACTGTTTTTGTT
CGTCTAATCCTCTTCGACTCTGCCTCCTCAGGAACGACGCGGCAACTGCGGCAGGTACATCTCGTCGCACCCTCTTCCCT
CGCATGTTCTTCTTCCTGTTTATTTTCTTTCTAATCCTGATTCCCAACTTGTCAATCGATCAATCAGGTTAACAGGGAAT
TGTTGTTAGGGCGCTCGAAGCATTGCGCGCATGTAGTCAGATTGGATTACA
>chr2D_1
AAGGGACACGGCGGCACGCAT-----GCACTCTCGAAGGGATCTGGCGCGAGCACGAGCAGGGAGGGAAAACACCCCCGT
CTGCTGTTCTGGGGCCGGACCCCGAGGCCATTAATCAAATCAAACCGAAACGGAGCTACCGCGGAGACCGGGATCTGCGG
AGCGGGGCCGGGCCCACGGTGGAACGAC-CCTTTTGACGGTGTGCGTGCGGGGAGGCGGGGCAGTGAGCTGCACTTGAGC
CGCGGGTTTGGGGTCCGCGAGGGAGAA----AGAG--AGAGGACCCGAGGCCGCTGGTTTTTGGCGGGTGCGGCTCCGGC
GACACCGCGGGAAAGAAAAGGCCC---GGATACCTTTTTGCTGCCGTTTCACGTTTTGAACCCCCACCCGCATCTTACCT
ACTCCTGCGAGTCGCGTCCAGG--------------------GTGCCTCTTCTACGCGTCAAAGCACCTTCAACTTCTGT
ACAAACATAATACTACTATATGGTAACCAGCACTATGATAAAAAATAATGATAATACACCAAGGAAGCATCCACAAATCT
CAGCATTGCCGCATGCTTGAGCTATGTATAGGAAAATGGGTGCGGCCATCC-----------------------------
--------------AGGAGATAACCAGGAAATTTGACTTTTTGCTAGATTT-----------TGCTAGGCATCCTTTTTA
AGCTCAGATGTGCCAAAGCCACTCACGACACAAACATCGGCTATGTATGTATACAAGTCCTACTAATAGGCAGGTAATAA
CCTCTCTCTCCAATCAAAGCTATTGACAAATTTCACTCAGAGCATCAACAACAACCTACAATACGACACCAAAAATTGAC
AAATTTCACTTAGAGCATCAACAACAACCCTACATCTGAGAAGTATAAGGGGGTGTTTGGTTCCATGGACTTTTTTGTGT
TGGGATTAAAAAAAGTCCCTAGCAAACCAAACAGGGTGGGACTTTTTTAAGACTTTTTGCTAAAAGTCCTTAGAAACACC
TCCTTGAGAGTCTTTTTCAAAAAGTCCTAGGGACTAGAAAAAGTTCTAGGACTATAGAACCAAACACCACCT--------
-AAGTCCCGATTTGGTCGGCCGAGCCGCCAACAAGTTTTGTCGAAGGTGAGGGCGGTGATGTCTGGCTCGTTGTACGTGC
CCAGCCAATACCGTACGCCCTCGTGCGTGATCTCATCTGGGAAACGACGAGAGTCCCGCTGACGAACGTCGTGGAAGCCA
ATGGAGCTCCTCGGTCGGTGGCGGGCAGCATTGCGGAACCTCGCGGCAGAAGTTGAGGACGACCGAAGAGGAGAGACGAC
AGTGGAACTGCCGCTTGGAGGGCCGATGCGGGCTGCAGATTTCTTGGAGGCGGATACGACTGTGCCAACGACCGAAGAGA
GGTAGGAGAGGGGGTGGATCTGCCGCATGGATGGTCGACGGCGGCGGATTCCTTGCAGGCGGGGGCATGGGCAATTGAAT
TTTGTG--------------------------------------------------------------------------
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---------------------------------------------------
>chr2B_72
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---CTGTTCTGGGGCCGGACCCCTAGGCCATTAATTAAATCAAACCGAAGCGGAGCTACCGCGGAGACCGGGATCTGCGG
AGCG-----GGGCCCACGGTGGAACGAG-CCTTTTGACGGTGTGCGTGCGTGGAGGCGGGGCAGTGAGCTGCACTTGAGC
CGCAGGTTTGGGGTCCGCGAGGGAGAGAGAGAGAAAGAGAGGACCCGAGGCCGCTGTTT-TTGGCGGGTGCGGCTCCGGC
GACACCGCGGGAAAGAAAAGGCGTTGAGGACACCTTTTCGCTGCCGTTTCACGTTTTGAACCCCCACCTG----------
----CTGCTAGTCGCGTTGAGGATTCCTCCCGTTC-----TCGTGCCTCTTCTACGCGTCAAAGCACCTTCACCTTCTGT
ACAAACATAATACTACTACT-----------ACTATGATAAAAAATAATGATAATACACCAAGGAAGCACCTACAAATCT
CAGCATTGCCGCATGCGTGAGCTATGTATAGGAAAATGGGTGCGGCCATCC-----------------------------
--------------AGGAAATAACGAGGAAATTTGACTTTTTGCTAGATTTCACATGGATCTTGCTACCCATCCTTTTTA
AGCTCACATGTGTCAAAGCCACTCAGGACACAA-----------------------------------------------
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---------------------------------------------------
>chr4D_1643
GGACA---------------------------------------------------------------------------
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---------------------------------------------------------------------CAGGGCTGGTC
CTGGGGCAGGGCGAACGGGGCGGCCGCCCCGGGCCCCCAAAAGTCAGGGGGGCCCTCCCAGGTACATATACGTTTCTACG
TACAGGCATGCAGTTCTTCGATTAAAAA----AATTGAAGCCAATCTGAACACCTCGCTCAGCCTCTGGT----------
----------------------------------------GTGCTAGCC--TAAGAAACTAAAAAAGATATGGTGGGCCT
GG------CCCATGTTTGCGCGTACGTGGAGACCGGAGAGGAAAAGGGATCGTTC-------------------------
-----GATTCACTAATCACGATTTCCTGTAACTTCGGATCGGTTGTT-CCTGCCCTTTTGGCTGTTCCGCCATTCCTGTT
CGTCTAACCCTCTTTGACTCTGCCTCCTCGTGAACGACGCGATGACTGCAGCAGGTACGTCTCGTCGCGCCCTCTTCCTT
CGCATGTTCTTCTTCCT--TTCTTTTATTTCCGGTCCTGGTTCCCAACTTGTCGATCGATTGAACATGTTAACAGGGAAT
TGTTGTTAGGGCGCTCGAATCATTGCGTGCTTGTAGCCACATTAGATTAC-
>chr5B_1646
CAAA----------------------------------------------------------------------------
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---------------------------------------------------------------------CAGGGCCGGTC
CTGGGGCAGGGCGAACGGGGCGGCCGCCCCGGGCCCCCAAAAGTCAGGGGGGCCCTCCAAGGTACATATAC-TTTTTACG
TACAGGCATGCAGGTCTTCGGTTGAAAAA---AATTGAAGCCAATCTGAACGCCTCGCTCAGCCTCTGGTTTTTTTTTTT
TGAGACACGCTCAGCCTCTG------------------GTGTGCTAGCCTATAAGAAACTAAAAAAGATATGATGGGCCT
GG------CCCATGTTTACACGTACGTGGAGACCCGAGAGGAAAAGGGATCGTTC-------------------------
-----GATTCACTAATCACGATTTCCTGTAACTTCGGATCGGTTGTT-CCTGCCCTTTTGGTTGTTCCACCGTTCCTGTT
CGTCTAATCCTCTTTGACTCTGCCTCCTCGTGAACAATGCGACGACTGTGGCAGGTACGTCTCGTCGCGCCCTCTTCCTT
CGCATGTTCTTCTTCCT--TTCTTTTAGTTTCAGTCCTGGTTCCCACCTTGTCGATCGATTGAACATGTTAACAGGGAAT
TGTTGTTAGGGCGCTCGAATCATTGCGCGCTTGTAGCCACATTAGATTAC-
>chr5A_1649
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--------------------------------------------------------------------CCAGGGCCGGTC
CTGGGGCAGGGCGAACGGGGCGGCCGCCCCGGGCCCCCGAAAGTCAGGAGCCCCATCTCAGGTATATGTACGCTAGTACG
TACAGGCATACAAGTCTTCAAGTGAAAAACACAATTGAAGCCAATCTCAGCGCCTCGCTCAGCCTCTGGTAC--------
------------------------------------------GCTAGTC--TAGGAAACTAAAAAGTATATGGTGGGCCT
GG------CCCATATTTGCATGTACGTGGAGACTGGAGAGGAAAAGGAATCTTCGATTCAGTAATCACTATTTCCTGTAA
CTTCGGATTCACTAATCACTATTTCTTGTAACTTTGGATCGGTTGTTCCCTGCCCTTTTGGCTGTTCCACTGTTTCTGTT
CGTCTAATCCTCTTCGACTCTGCCTCCTCAGGAACGACGCGGCGACTGCGGCTGGTACATCTCGTCGCACCCTCTTCCCT
CGCATGTTCTTCTTCCTGTTTATTTTCTTTCTAATCCTGATTCCCAACTTGTCAATCGATCAATCAGGTTAACAGGGAAT
TGTTGTTAGGGCGCTCGAAGCATTGCGCGCATGTAGTCAGATTGGATTACA
>chr3A_1650
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---------------------------------------------------------------------CAGGGCCGGTC
CTGGGGCAGGGTGAACGGGGCGGCCGCCCCGGGCCCCCGAAAGTCAGGGGCCCCATCTCAGGTATATGTACGCTAGTACG
TACATGCATACAAGTCTTCGAGGGAAAAACACAATTGAAGCCAATCTCAGCGCCTCGCTCAGCCTCTGGTAC--------
------------------------------------------GCTAGTC--TAGGAAACTAAAAAGTATATGGTGGGCCT
GG------CCCATGTTTGCATGTACGTGGAGACTGGAGAGGAAAAGGAATCTTCGATTCACTAATCACTATTTCCTGTAA
CTTCGGATTCACTAATCACTATTTCCTGTAACTTCGGATCGGTTGTTCCCTGCCCTTTTGGCTGTTTCACTGTTTCTGTT
CGTCTAATCCTCTTCGACTCTGCTTCCTCAGGAACGACGCGGCGACTGCGGCAGGTACATCTCATCGCACCCTCTTCCCT
CGCATGTTCTTCTTCCTGTTTATTTTCTTTCTAATCCTGATTCCCAACTTGTCAATCGATCAATCAGGTTAACAGGGAAT
TGTTGTTAGGGCGCTCGAAGCATTGCGCGCATGTAGTCAGATTGAATTACA
>chr3B_1650
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---------------------------------------------------------------------CAGGGCCGGTC
CTGGGGCAGGGCGAACGTGGCGGCCACCCCGGGCCCTGAAAGTCA--GGGGGCCCTCCCAGGTATATGTACGTTAGTACA
TCCAGGCATACAAGTCTTCAAGTGAAAAGGACAATTGAAGCCGATCTCAGCGCCTCGCTTTGCCTCTGGTATCATGGGAG
CATATGTAAGGGTTGGTATCATGTGATATTTTCTCATCGTGTGCTAGTC--TAGGAAACTAAAATATATATAATGGGTCT
GG------CCCATGTTTAGACATACGTGGAGACTGGAGAGAAAAAGGAATCTTCAATTCACGAATCACTA----------
------------------CTATTTCCTGTAACTTCGGATCTGTCGTCCCCTGCCCTTTTGCCTGTTCCGTTATTCCTGTA
CGTCTAACCCTCTTCGACTCTGCCTCCTCACGAACGACGCGGCCACTGTGGCAGGTACGTCTCGTCGCGCCCTCTTCCCT
GGCATGTTCTTCTTCCTGTTTATTTTCTTTCTTATCCAGAGTCCCAACTTATCAATCGATCGAACATG-TAACAGGGAAT
TCTTGTTAGGGCGCTCGAATCATTGCGCGCATGTAGTCAGATTAGATTACA
>chr6D_1650
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---------------------------------------------------------------------CAGGGCCGGTC
CTGGGGCAGGGCGAACGGGGCGGCCGCCCCGGGCCCCCAAAAGTCAGGGGGGCCCTCCCAGGTACATATACGTTTGTTCA
TACAGGCATGCAGTTCTTCGATTGAAAAA---AATTGAAGCCAATCTGAACGCCTCGCTCAGCCTCTGGT----------
----------------------------------------GTGCTAGCC--TAAGAAACTAAAAAAGATATGGTGGGCCT
GG------CCCATGTTTGCACGTACGTGGAGACCGGAGAGGAAAAGGGGTCGTTC-------------------------
-----GATTCACTAATCACGATTTCTTGTAACTTCGGATCGGTTGTT-CATGCCCTTTTGGCTGTTCCGCCATTCCTGTT
CGTCTAACCCTCTTTGACTCTGCCTCCTCGTGAACGACGCGATGACTGCAGCAGGTACGTCTCGTCGCGCCCTCTTCCTT
CGCATGTTCTTCTTCCT--TTCTTTTATTTCTGGTCCTGGTTCCCAACTTGTCGATCGATTGAACATGTTAACAGGGAAT
TGTTGTTAGGGCGCTCGAATCATTGCGTGCTTGTAGCCACATTAGATTAC-
>SNPs
--------------------SSSSSS---------------------------S------S-------------------
------S-------S-----S-----S-----------S--S-S------------------------------------
-----------------S----------S---------------------------------------------------
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--------------------S--S---------------------------------------------S-----S--S-
---S------------------S----S-------SSSSS--------------------------------------S-
----------------------------------S-S-------------S-----SSSSSSSSSSSS-SSSSSS-SSSS
--SSSS-SS-SS--SS-SSSSSS-SSSSSS-SS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS------------------------------------------------------------------
---S----------S----------S---------S---S-SSS-S-SSSSS-SSSSS-SS--S--SSSSSSSS-S--S-
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-----------------------------------------------------------------S-SS--S---S-S--
-S---SSSS-SSSS-S--SSS-SS--SSS-SSSSS-SSS-SSSSSS-SSS-S-SSSSSSSSSSS-SSSSSS-SSSSSSSS
S---------------S-S-------S------S--------S----S-S------------------S-----------
SS-S--------------------------------SS---------S-S-S------SS--S---S---S------S-S
---------------------------S---------S--------------------------------------S-SS
-----------------S----S-S-S---------S------S-------S----S--S------S-----S-------
--S---S---------------S-----------SS--S----S-S--------S----S------S--------S----
--S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------
-----------------------------------------------------------------------S--------
-------------------------------------S------------------------------------------
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--SSSSSS---------------S-S-----------------------------------------------S------
-------------------------S-----------------------------------------S-------S----
-------------------------------------------S------------------------------------
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>forward_1201
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-------------------------------------------------------------TCTGGCTTGTTGTACGTGC
T-------------------------------------------------------------------------------
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>reverse_2364
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-------------------------------------------AACTGCGGCAGGTACATCTC-----------------
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